Query 030654
Match_columns 174
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 03:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kix_A BM2 protein; channel, t 33.7 17 0.00057 22.7 1.3 17 149-165 7-23 (33)
2 2jtw_A Transmembrane helix 7 o 14.7 64 0.0022 19.2 1.1 12 161-172 4-15 (26)
3 2jp3_A FXYD domain-containing 13.1 1.1E+02 0.0038 21.4 2.2 18 137-154 22-39 (67)
4 1l4t_A Gastrin/cholecystokinin 12.8 65 0.0022 19.3 0.8 15 151-165 16-30 (30)
5 3odu_A C-X-C chemokine recepto 12.1 3.7E+02 0.013 20.7 5.1 20 130-149 420-439 (502)
6 2zxe_G FXYD10, phospholemman-l 11.6 1.3E+02 0.0044 21.5 2.2 19 137-155 24-42 (74)
7 4grv_A Neurotensin receptor ty 11.3 2.4E+02 0.0083 22.8 4.0 18 131-148 417-434 (510)
8 3s8f_C Cytochrome C oxidase po 10.7 1.4E+02 0.0046 18.4 1.8 12 133-144 20-31 (34)
9 2nvj_A 25MER peptide from vacu 10.6 50 0.0017 19.7 -0.2 12 161-172 9-20 (26)
10 2eqz_A High mobility group pro 10.2 2E+02 0.0067 18.7 2.6 34 87-123 2-35 (86)
No 1
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=33.71 E-value=17 Score=22.74 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.3
Q ss_pred HHhhccchhhHHHHHHH
Q 030654 149 ALAASVKKLSFLHFLTY 165 (174)
Q Consensus 149 aLAASGF~~~~~~~~~~ 165 (174)
+|..+.|.+|-|||+.+
T Consensus 7 ilsi~sfilsalhf~aw 23 (33)
T 2kix_A 7 ILSISSFILSALHFIAW 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788899999999865
No 2
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=14.74 E-value=64 Score=19.25 Aligned_cols=12 Identities=50% Similarity=1.121 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcc
Q 030654 161 HFLTYVKLWKLS 172 (174)
Q Consensus 161 ~~~~~~~~~~~~ 172 (174)
|-+.|.+||-||
T Consensus 4 ~tasylRlwaLs 15 (26)
T 2jtw_A 4 HTASYLRLWALS 15 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred cchhHHHHHHhh
Confidence 557899999875
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=13.12 E-value=1.1e+02 Score=21.43 Aligned_cols=18 Identities=50% Similarity=0.645 Sum_probs=14.9
Q ss_pred HhhhHHHHHhhhHHhhcc
Q 030654 137 LGVGGIILFQGIALAASV 154 (174)
Q Consensus 137 LGLG~IILvEGIaLAASG 154 (174)
|-+++|+++=||++..||
T Consensus 22 LifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcC
Confidence 556778888899999998
No 4
>1l4t_A Gastrin/cholecystokinin type B receptor; hormone/growth factor receptor; NMR {Synthetic} SCOP: j.82.1.1
Probab=12.81 E-value=65 Score=19.28 Aligned_cols=15 Identities=40% Similarity=0.611 Sum_probs=10.9
Q ss_pred hhccchhhHHHHHHH
Q 030654 151 AASVKKLSFLHFLTY 165 (174)
Q Consensus 151 AASGF~~~~~~~~~~ 165 (174)
+-+|-..+|.|.|.|
T Consensus 16 ~l~~~~IsFihLLSY 30 (30)
T 1l4t_A 16 ALSGAPISFIHLLSX 30 (30)
T ss_dssp HHHSSCHHHHHHHC-
T ss_pred hhccccchhhhhccC
Confidence 446777899998876
No 5
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=12.10 E-value=3.7e+02 Score=20.70 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.9
Q ss_pred hHHHHHHHhhhHHHHHhhhH
Q 030654 130 SAFLLAWLGVGGIILFQGIA 149 (174)
Q Consensus 130 sAFLLAWLGLG~IILvEGIa 149 (174)
.+|++.|+=..++.++..+.
T Consensus 420 ~~F~icw~P~~i~~~~~~~~ 439 (502)
T 3odu_A 420 LAFFACWLPYYIGISIDSFI 439 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 35899999999888877654
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.62 E-value=1.3e+02 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.5
Q ss_pred HhhhHHHHHhhhHHhhccc
Q 030654 137 LGVGGIILFQGIALAASVK 155 (174)
Q Consensus 137 LGLG~IILvEGIaLAASGF 155 (174)
|-+++|+++=||++..||.
T Consensus 24 LifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred chhHHHHHHHHHHHHHcCc
Confidence 5567788889999999984
No 7
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=11.34 E-value=2.4e+02 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHhhh
Q 030654 131 AFLLAWLGVGGIILFQGI 148 (174)
Q Consensus 131 AFLLAWLGLG~IILvEGI 148 (174)
+|++.||=+.++.|+..+
T Consensus 417 ~F~iCWlPf~i~~l~~~~ 434 (510)
T 4grv_A 417 AFVVCWLPYHVRRLMFCY 434 (510)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999888777654
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=10.66 E-value=1.4e+02 Score=18.44 Aligned_cols=12 Identities=42% Similarity=0.952 Sum_probs=5.8
Q ss_pred HHHHHhhhHHHH
Q 030654 133 LLAWLGVGGIIL 144 (174)
Q Consensus 133 LLAWLGLG~IIL 144 (174)
+++|+|..++.|
T Consensus 20 ~i~W~~vf~lFl 31 (34)
T 3s8f_C 20 LVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHeeee
Confidence 345555554433
No 9
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=10.56 E-value=50 Score=19.68 Aligned_cols=12 Identities=50% Similarity=1.121 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcc
Q 030654 161 HFLTYVKLWKLS 172 (174)
Q Consensus 161 ~~~~~~~~~~~~ 172 (174)
|-+.|.++|-||
T Consensus 9 ~tasylRlwaLs 20 (26)
T 2nvj_A 9 HTASYLRLWALS 20 (26)
T ss_dssp TTCHHHHGGGSC
T ss_pred CchHHHHHHhhh
Confidence 456799999886
No 10
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.24 E-value=2e+02 Score=18.65 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=13.8
Q ss_pred CcCCCCCCCCCCCCcccccCCCCcccccchhhHHHHH
Q 030654 87 SKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEAKAK 123 (174)
Q Consensus 87 ~s~kkK~K~~r~~a~VVRRaP~ekpsi~sq~~~~~~~ 123 (174)
++|++|.+.+.++++ +| |.-.=.+|.++.-++.+
T Consensus 2 ~~g~~~~~~kdp~~P--Kr-P~say~lF~~~~r~~~k 35 (86)
T 2eqz_A 2 SSGSSGMAKGDPKKP--KG-KMSAYAFFVQTCREEHK 35 (86)
T ss_dssp CCCCSSCSSCCSSSC--CC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCC--CC-CCcHHHHHHHHHHHHHH
Confidence 444444333333332 33 33333455555433333
Done!