Query 030654
Match_columns 174
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 03:28:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030654.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030654hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q59a_ f.1.4.1 (A:) Early ant 20.5 40 0.0029 25.4 3.5 39 100-138 26-71 (172)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 12.0 54 0.004 18.9 1.8 16 132-147 18-33 (33)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 8.2 1.8E+02 0.013 16.6 3.1 22 131-152 11-32 (34)
4 d1yuaa1 g.41.3.3 (A:1-65) Prok 7.8 24 0.0017 23.2 -1.2 11 146-156 34-44 (65)
5 d1mv8a1 a.100.1.4 (A:203-300) 7.3 69 0.005 20.5 1.1 11 61-71 57-67 (98)
6 d3by5a1 c.151.1.1 (A:8-130) Co 6.9 28 0.002 23.7 -1.2 45 109-155 55-100 (123)
7 d1ad1a_ c.1.21.1 (A:) Dihydrop 6.7 67 0.0048 24.2 0.8 9 61-69 166-174 (264)
8 d1zt2b1 a.262.1.1 (B:3-209) DN 6.2 58 0.0042 23.6 0.2 14 160-173 138-158 (207)
9 d1xxxa1 c.1.10.1 (A:5-300) Dih 6.0 1.1E+02 0.0083 21.7 1.8 29 143-171 194-224 (296)
10 d1eyea_ c.1.21.1 (A:) Dihydrop 5.7 80 0.0059 23.5 0.8 9 61-69 173-181 (270)
No 1
>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus [TaxId: 10376]}
Probab=20.51 E-value=40 Score=25.37 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.8
Q ss_pred CcccccCCCCcccccchhhH-------HHHHHhhhhhhHHHHHHHh
Q 030654 100 ASVVRRNPVEKLSVMSKEDE-------AKAKEMMKNESAFLLAWLG 138 (174)
Q Consensus 100 a~VVRRaP~ekpsi~sq~~~-------~~~~e~~~nEsAFLLAWLG 138 (174)
-+|.|-+..|.|.+.+.++. ....+-.||+-+|+-+|.-
T Consensus 26 hpvLel~~re~P~~~sp~D~~vLr~h~lleqiI~~n~esf~~t~~~ 71 (172)
T d1q59a_ 26 HPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETWNR 71 (172)
T ss_dssp CSTTSCSSCSSCCSCCSCCHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred chhHhhccccCCCcCCCCcchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35888888899998888773 2334578899999999953
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=11.96 E-value=54 Score=18.90 Aligned_cols=16 Identities=38% Similarity=0.856 Sum_probs=10.9
Q ss_pred HHHHHHhhhHHHHHhh
Q 030654 132 FLLAWLGVGGIILFQG 147 (174)
Q Consensus 132 FLLAWLGLG~IILvEG 147 (174)
.|.-|+|.-++.|+.|
T Consensus 18 ilvfw~gv~avf~arg 33 (33)
T d1xmec1 18 ILVFWLGVYAVFFARG 33 (33)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccC
Confidence 4566888877777654
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=8.24 E-value=1.8e+02 Score=16.60 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=15.4
Q ss_pred HHHHHHHhhhHHHHHhhhHHhh
Q 030654 131 AFLLAWLGVGGIILFQGIALAA 152 (174)
Q Consensus 131 AFLLAWLGLG~IILvEGIaLAA 152 (174)
||--.||.+...+|+--|+|-|
T Consensus 11 ayekgwlafslamlfvfialia 32 (34)
T d1xmeb2 11 AYEKGWLAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 4445688888877777777754
No 4
>d1yuaa1 g.41.3.3 (A:1-65) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=7.78 E-value=24 Score=23.21 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=7.2
Q ss_pred hhhHHhhccch
Q 030654 146 QGIALAASVKK 156 (174)
Q Consensus 146 EGIaLAASGF~ 156 (174)
-||-||||.|-
T Consensus 34 ~GlFlAAs~FP 44 (65)
T d1yuaa1 34 AGVFLAANTFP 44 (65)
T ss_dssp SSCEEEETTTT
T ss_pred cceeeecccCC
Confidence 36677777763
No 5
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.34 E-value=69 Score=20.48 Aligned_cols=11 Identities=55% Similarity=0.957 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q 030654 61 SPGQGFGSSTL 71 (174)
Q Consensus 61 spG~GFGs~~~ 71 (174)
.||.|||..-.
T Consensus 57 ~pG~G~GG~Cl 67 (98)
T d1mv8a1 57 RPGFAFGGSCL 67 (98)
T ss_dssp SCCSCCCSSSH
T ss_pred CCcccCCcccc
Confidence 58999997643
No 6
>d3by5a1 c.151.1.1 (A:8-130) Cobalamin biosynthesis protein CobE {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.92 E-value=28 Score=23.72 Aligned_cols=45 Identities=18% Similarity=0.015 Sum_probs=30.3
Q ss_pred Ccccc-cchhhHHHHHHhhhhhhHHHHHHHhhhHHHHHhhhHHhhccc
Q 030654 109 EKLSV-MSKEDEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASVK 155 (174)
Q Consensus 109 ekpsi-~sq~~~~~~~e~~~nEsAFLLAWLGLG~IILvEGIaLAASGF 155 (174)
+-|.. |+.++=.+...+--|.|.|+..-+|.+.| .|--||+|+|-
T Consensus 55 ~~pl~~~~~e~L~~~~~~~~~~S~~v~~~~Gv~sV--aEaaAl~aag~ 100 (123)
T d3by5a1 55 SLSLEIVAQERLEAVAAETMTFSQASLDHSGSPSV--SEAAALAAAGA 100 (123)
T ss_dssp TCCEEECCHHHHHHHHHHHHHTCGGGCSSSSSCCH--HHHHHHHHHCT
T ss_pred CCCeEEeCHHHHHhhhccCCChhHHHHHHhCCcHH--HHHHHHHhCCC
Confidence 34443 44443333222346789999999999986 79999998864
No 7
>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}
Probab=6.66 E-value=67 Score=24.19 Aligned_cols=9 Identities=44% Similarity=1.055 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 030654 61 SPGQGFGSS 69 (174)
Q Consensus 61 spG~GFGs~ 69 (174)
-||.|||-+
T Consensus 166 DPGiGFgKt 174 (264)
T d1ad1a_ 166 DPGIGFAKT 174 (264)
T ss_dssp ECCTTSSCC
T ss_pred ccCcCcccc
Confidence 589999965
No 8
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.23 E-value=58 Score=23.55 Aligned_cols=14 Identities=57% Similarity=1.293 Sum_probs=10.5
Q ss_pred HHHHHHHHH-------hhccC
Q 030654 160 LHFLTYVKL-------WKLSN 173 (174)
Q Consensus 160 ~~~~~~~~~-------~~~~~ 173 (174)
+|+..|+++ |+|.|
T Consensus 138 i~~~Dyl~~~~~~~~~WrLvN 158 (207)
T d1zt2b1 138 VHFIDYLKYTKDLKEDWKLSG 158 (207)
T ss_dssp EEHHHHHHHTTTSCGGGCTTS
T ss_pred eeHHHHHHhcccCCCCcccCc
Confidence 566777776 89887
No 9
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.05 E-value=1.1e+02 Score=21.69 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=21.6
Q ss_pred HHHhhhHHhhccchhhHHHHHH--HHHHhhc
Q 030654 143 ILFQGIALAASVKKLSFLHFLT--YVKLWKL 171 (174)
Q Consensus 143 ILvEGIaLAASGF~~~~~~~~~--~~~~~~~ 171 (174)
.++++..+.+.|+......|+. ++++|++
T Consensus 194 ~~~~~~~~G~~G~is~~~n~~P~~~~~i~~~ 224 (296)
T d1xxxa1 194 LNLPWLAMGATGFISVIAHLAAGQLRELLSA 224 (296)
T ss_dssp GHHHHHHHTCCEEEESTHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccchhccchhHHHHHHHhh
Confidence 4567788888888888777753 7788874
No 10
>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.74 E-value=80 Score=23.47 Aligned_cols=9 Identities=44% Similarity=1.066 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 030654 61 SPGQGFGSS 69 (174)
Q Consensus 61 spG~GFGs~ 69 (174)
-||.|||-+
T Consensus 173 DPGiGFgKt 181 (270)
T d1eyea_ 173 DPGLGFAKT 181 (270)
T ss_dssp ECCTTSSCC
T ss_pred ccccccCcc
Confidence 589999844
Done!