BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030655
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
Thaliana Protein Containing Duf538 Domain
Length = 170
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 21 KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQ--FHYDF 78
K + + + LK + LPIGI P T Y D + + + C+ +++ +
Sbjct: 47 KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106
Query: 79 NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGV 125
++G+L GK+ ++ G+ + ++ +W V I D + +YF G+
Sbjct: 107 TVTGHLEKGKLTDVEGI-KTKVMIWVKVTSISTD---ASKVYFTAGM 149
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 29.6 bits (65), Expect = 0.83, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 40 GILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQE 99
GILP + S D +T+P A F N H + YL+ G++ S V
Sbjct: 307 GILPLEALDLSTD---------MTQPLSAYFINSSH-----NTYLTAGQLAGTSSVEMYR 352
Query: 100 LFLWFPVRCIRVD 112
L + RC+ +D
Sbjct: 353 QALLWGCRCVELD 365
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 40 GILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQE 99
GILP + S D +T+P A F N H + YL+ G++ S V
Sbjct: 305 GILPLEALDLSTD---------MTQPLSAYFINSSH-----NTYLTAGQLAGTSSVEMYR 350
Query: 100 LFLWFPVRCIRVD 112
L + RC+ +D
Sbjct: 351 QALLWGCRCVELD 363
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 21 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 54
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 21 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 54
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 21 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 54
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double
Mutant
Length = 462
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 4 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 37
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 4 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 37
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 4 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 37
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 4 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 37
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 22 AQASSSIYDHLKAHGLPIGILPKGITEYSVDPTS 55
+ A +S+YD L+ H G+ G T YS+D +
Sbjct: 4 SSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAA 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,259,053
Number of Sequences: 62578
Number of extensions: 211580
Number of successful extensions: 262
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 11
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)