BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030655
         (174 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
           GN=At5g01610 PE=1 SV=1
          Length = 170

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 21  KAQASSSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQINLTEPCDAKFENQ--FHYDF 78
           K +    + + LK + LPIGI P   T Y  D  +    + +   C+  +++     +  
Sbjct: 47  KGKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTT 106

Query: 79  NISGYLSMGKIGELSGVSQQELFLWFPVRCIRVDDPSSGLIYFDVGVVDKQFSLSLFEDP 138
            ++G+L  GK+ ++ G+ + ++ +W  V  I  D   +  +YF  G + K  S   +E  
Sbjct: 107 TVTGHLEKGKLTDVEGI-KTKVMIWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYEVQ 161

Query: 139 RDCTAADH 146
           R+    D 
Sbjct: 162 RNGLRVDK 169


>sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1
          Length = 1224

 Score = 32.0 bits (71), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 4   RIILWAILLVGLCRIEAKAQAS--SSIYDHLKAHGLPIGILPKGITEYSVDPTSGFFQIN 61
           R+++W  L   +C   ++  +S  S +Y  +   G+P+G+L   + + S+D   G   I 
Sbjct: 379 RVMIWE-LKSAVCNRNSRNSSSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIA 437

Query: 62  LTEPCDAKFENQFHYDFNISGYLS-----MGKIGELSGVSQQELFLWFPVRCIRVDDPSS 116
             E        + H  F ++G LS        I     ++ + + ++ P+  +   + S 
Sbjct: 438 GEEHPRGSILREVHLKFLLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSNGSV 497

Query: 117 GLIYFDVGVVDKQFSL 132
            + +   G++ K+ S+
Sbjct: 498 LVYHLTSGLLHKELSI 513


>sp|A6LSR0|PNP_CLOB8 Polyribonucleotide nucleotidyltransferase OS=Clostridium
           beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pnp
           PE=3 SV=1
          Length = 701

 Score = 32.0 bits (71), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 18  IEAKAQASSSIYDHLKAHGLPIGILP---------KGITEYSVDPTSG-FFQINLTEPCD 67
           ++ K +     +D ++  G  IGILP         +G+T+     T G   +I + +  D
Sbjct: 307 LKDKRRPDGRAFDQIRPLGCEIGILPRTHGTGLFTRGLTQVMTVATLGSISEIQILDGID 366

Query: 68  AKFENQFHYDFNISGYLSMGKIGELSGVSQQEL 100
                ++ + +N  GY S+G++  L G  ++E+
Sbjct: 367 EAQSKRYMHHYNFPGY-SVGEVKPLRGPGRREI 398


>sp|Q9UPZ6|THS7A_HUMAN Thrombospondin type-1 domain-containing protein 7A OS=Homo sapiens
            GN=THSD7A PE=1 SV=4
          Length = 1657

 Score = 31.6 bits (70), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 15/91 (16%)

Query: 64   EPCDAKFENQFHYDFNISGYLSMGKIGELS----GVSQQELFLWFPVRCIRVDDPSSGLI 119
            EPC+   +N +HYD+N++ + S  ++ E +    G+  + L       C+R D  S  L 
Sbjct: 1211 EPCNLN-KNCYHYDYNVTDW-STCQLSEKAVCGNGIKTRML------DCVRSDGKSVDLK 1262

Query: 120  YFDVGVVDKQFSLS---LFEDPRDCTAADHS 147
            Y +   ++K + ++   + E P +C  +D S
Sbjct: 1263 YCEALGLEKNWQMNTSCMVECPVNCQLSDWS 1293


>sp|Q6P6Z8|ODO1_XENLA 2-oxoglutarate dehydrogenase, mitochondrial OS=Xenopus laevis
           GN=ogdh PE=2 SV=1
          Length = 1021

 Score = 31.6 bits (70), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 77  DFNISGYLSMGKIGELSGVSQQEL---FLWFPVRCIRVDDPSSGLIYFDVG--------V 125
           D+ I G    G++  L+ V ++EL   F  F  + +   D  SG + + +G        V
Sbjct: 302 DYVIMGMPHRGRLNVLANVIRKELEQIFCQFDSK-LEATDEGSGDVKYHLGMYHRRINRV 360

Query: 126 VDKQFSLSLFEDPRDCTAADHSSNGFQFQDQF 157
            D+  +LSL  +P    AAD    G    +QF
Sbjct: 361 TDRNITLSLVANPSHLEAADPVVQGKTKAEQF 392


>sp|Q99JE6|PLCB3_RAT 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3
           OS=Rattus norvegicus GN=Plcb3 PE=1 SV=2
          Length = 1234

 Score = 30.0 bits (66), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 14/73 (19%)

Query: 40  GILPKGITEYSVDPTSGFFQINLTEPCDAKFENQFHYDFNISGYLSMGKIGELSGVSQQE 99
           GILP    + S+D         +T+P  A F N  H     + YL+ G++   S V    
Sbjct: 304 GILPLEALDLSMD---------MTQPLSAYFINSSH-----NTYLTAGQLAGTSSVEMYR 349

Query: 100 LFLWFPVRCIRVD 112
             L +  RC+ +D
Sbjct: 350 QALLWGCRCVELD 362


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,772,953
Number of Sequences: 539616
Number of extensions: 2673005
Number of successful extensions: 4296
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4295
Number of HSP's gapped (non-prelim): 9
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)