BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030656
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NPS|C Chain C, Crystal Structure Of The Early Endosomal Snare Complex
          Length = 81

 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 73  RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNV 132
           R+ L+ +TER+ +S+ R++   +  +ETE++G                A   L   D N+
Sbjct: 4   RAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANL 63

Query: 133 SKSKKVLTAMSRRMSRNK 150
            KS ++LT M RR+ +N+
Sbjct: 64  GKSSRILTGMLRRIIQNR 81


>pdb|1VCS|A Chain A, Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain
          Of Vti1a [mus Musculus]
          Length = 102

 Score = 32.3 bits (72), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 5  IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK--RLVSG 47
          + +MDLE R + P  + +   ++R YK ++  L+++ K  R+ SG
Sbjct: 54 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASG 98


>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex
          Length = 65

 Score = 30.0 bits (66), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 83  VNQSTDRIKDSRRTMLETEELGVXXXXXXXXXXXXXXHAHNTLHGVDDNVSKSKKVLTAM 142
           +N++T  I+ S R   ET+++G                  + L   ++N+SKS+K+L +M
Sbjct: 4   MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63

Query: 143 SR 144
           SR
Sbjct: 64  SR 65


>pdb|1AXD|A Chain A, Structure Of Glutathione S-transferase-i Bound With The
           Ligand Lactoylglutathione
 pdb|1AXD|B Chain B, Structure Of Glutathione S-transferase-i Bound With The
           Ligand Lactoylglutathione
          Length = 209

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 128 VDDNVSKSKKVLTAMSRRMSRNKWIIG 154
           VD+N+ K KKVL     R+++ K++ G
Sbjct: 131 VDENLEKLKKVLEVYEARLTKCKYLAG 157


>pdb|1BYE|A Chain A, Glutathione S-Transferase I From Mais In Complex With
           Atrazine Glutathione Conjugate
 pdb|1BYE|B Chain B, Glutathione S-Transferase I From Mais In Complex With
           Atrazine Glutathione Conjugate
 pdb|1BYE|C Chain C, Glutathione S-Transferase I From Mais In Complex With
           Atrazine Glutathione Conjugate
 pdb|1BYE|D Chain D, Glutathione S-Transferase I From Mais In Complex With
           Atrazine Glutathione Conjugate
          Length = 213

 Score = 27.3 bits (59), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 128 VDDNVSKSKKVLTAMSRRMSRNKWIIG 154
           VD+N+ K KKVL     R+++ K++ G
Sbjct: 131 VDENLEKLKKVLEVYEARLTKCKYLAG 157


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.126    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,289,897
Number of Sequences: 62578
Number of extensions: 86317
Number of successful extensions: 290
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)