BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030656
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/170 (77%), Positives = 150/170 (88%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
++KMDLEAR+L PNVK+ LL KLREYKSDLNN K+EVKR+ SGNLNA ARDELLE+GMAD
Sbjct: 52 VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 111
Query: 65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
LTASADQRSRLMMST+ + ++TDRIKDSRRT+LETEELGVSILQDL QRQSLL AH T
Sbjct: 112 TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 171
Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
LHGVDDNV KSKK+LT M+RRM+RNKW IG ++ VLV+AII ILYFKL +
Sbjct: 172 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/170 (73%), Positives = 148/170 (87%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
IRKMDLEAR+L PN+K+ LL KLRE+KSDLNN K+EVKR+ SG LNAAARDELLE+GMAD
Sbjct: 52 IRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMAD 111
Query: 65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
TASADQR+RLMMSTER+ ++TDR+KDSRRTM+ETEE+GVSILQDL QRQSLL AH T
Sbjct: 112 TKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHET 171
Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
LHGVDDN+ KSKK+LT M+RRM++NKW IG ++ L+ AI +ILYFKL K
Sbjct: 172 LHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 118/169 (69%), Positives = 143/169 (84%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
IRKMDLEARSLQP+ KAV L+KLREYKSDLN LK E KR+ S + ++R+EL+ESGMAD
Sbjct: 53 IRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMAD 112
Query: 65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
SADQR RL MS ER++QS+DRI++SRR MLETEE+G+SI+QDLS QRQ+LLHAHN
Sbjct: 113 LHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNK 172
Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173
LHGVDD + KSKKVLTAMSRRM+RNKWII +V+ LV+AIILI+ +KL+
Sbjct: 173 LHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + D
Sbjct: 52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106
Query: 65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
A +S +QR+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+ + A +
Sbjct: 107 AGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDR 166
Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
L D N+ KS ++LT M RR+ +N+ ++ + ++VIAI+ + F
Sbjct: 167 LRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + D
Sbjct: 52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106
Query: 65 ALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNT 124
+S +QR+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+ + A
Sbjct: 107 DGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARER 166
Query: 125 LHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
L D N+ KS ++LT M RR+ +N+ ++ + ++VI I++ + F
Sbjct: 167 LRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILMAITF 212
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 96/173 (55%), Gaps = 12/173 (6%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD 64
+ +MDLE R + P + + ++R YK ++ L+++ KR A DE+ + D
Sbjct: 52 LEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS-----RIAYSDEVRNELLGD 106
Query: 65 ALTASADQ-------RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQS 117
A +S +Q R+ L+ +TER+ +S+ R++ + +ETE++G +L++LS R+
Sbjct: 107 AGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRER 166
Query: 118 LLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
+ A L D N+ KS ++LT M RR+ +N+ ++ + ++VI I+ + F
Sbjct: 167 IQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 7/154 (4%)
Query: 1 MFWQIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELL 58
+F + +MD+E + + +A AKLRE+K ++S++KR + +++ RD L
Sbjct: 48 LFDLLDQMDVEVNNSIGDASERATYKAKLREWK---KTIQSDIKRPLQSLVDSGDRDRLF 104
Query: 59 ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
G +A DQR +L+ + + +S DR+KD+ R ETE +G I+ DL SQR++L
Sbjct: 105 --GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETL 162
Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 152
+A TL D V KS K L M+RR+ NK+I
Sbjct: 163 ENARQTLFQADSYVDKSIKTLKTMTRRLVANKFI 196
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 98/176 (55%), Gaps = 14/176 (7%)
Query: 7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAA--ARDEL------L 58
+M+ E R + +++KLR Y+ DL L EV+ S L AA R +L L
Sbjct: 61 EMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR---STPLTAAPGGRGDLKYGTYTL 117
Query: 59 ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
E+ + L + QR+ L+ TE +N++T I+ S R ET+++G I+++L QR L
Sbjct: 118 ENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQL 174
Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174
+ L ++N+SKS+K+L +MSR++ NK ++ ++ + + ++ ++Y+K +
Sbjct: 175 ERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKFFR 230
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 101/177 (57%), Gaps = 16/177 (9%)
Query: 7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNA--AARDEL------L 58
+M+ E R + +++KLR Y+ DL L EV+ S L A R +L L
Sbjct: 61 EMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREVR---STPLTATPGGRGDLKFGTYTL 117
Query: 59 ESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSL 118
E+ + L + QR+ L+ TE +N++T I+ S R ET+++G I+++L QR L
Sbjct: 118 ENEHLNRLQS---QRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQL 174
Query: 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL-ILYFKLAK 174
+ L ++N+SKS+K+L +MSR++ NK ++ +V+ VL +AI++ ++Y+K +
Sbjct: 175 ERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIIVLELAILVGLVYYKFFR 230
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 95/170 (55%), Gaps = 6/170 (3%)
Query: 7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMA--- 63
+M+ E R + + +++KLR Y+ DL L EV R AR ++ A
Sbjct: 61 EMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RSTPLTATPGARGDMKYGTYAVEN 119
Query: 64 DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHN 123
+ + QR+ L+ T+ +N++T I+ S R ET+++G I+++L QR L +
Sbjct: 120 EHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKS 179
Query: 124 TLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII-LILYFKL 172
L +N+SKS+K+L +MSR+++ NK ++ ++V +L +AI+ ++Y+K
Sbjct: 180 RLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLELAILGGLVYYKF 228
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 15/156 (9%)
Query: 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLN----NLKSEV----KRLVSGNLNAAARDE 56
I +M++E + + + ++ ++R Y+S L +LK E+ ++ + GN RDE
Sbjct: 45 IGQMEIEITGIPTSERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGN-----RDE 99
Query: 57 LLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQ 116
SG A DQR+RL+ T R+ QS+ R+ +S+R ETE +G SIL+DL QR
Sbjct: 100 T--SGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRN 157
Query: 117 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 152
L H+ L ++ +S + L M+RR++ N++
Sbjct: 158 QLEHSLEMLGDTSGHLDRSLRTLKTMARRLAMNRFF 193
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 90/169 (53%), Gaps = 4/169 (2%)
Query: 7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMA--- 63
+M+ E R + + +++KLR Y+ DL L EV R R ++ A
Sbjct: 61 EMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDMKYGIYAVEN 119
Query: 64 DALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHN 123
+ + QR+ L+ TE +N++T I+ S R ET+++G I+++L QR L +
Sbjct: 120 EHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQLERTKS 179
Query: 124 TLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172
L +N+SKS+K+L +MSR+++ NK ++ ++ + + + ++Y+K
Sbjct: 180 RLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKF 228
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 23 LLAKLREYKSDLNNLKSEVK--RLVSGNLNAAARDELLESGMADALTASADQRSRLMMST 80
L K ++Y SD+ K EV+ +L S N + + D + +QR L+ +
Sbjct: 67 LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNS---NPWSNAPDDYQSQYDNQRQHLLQGS 123
Query: 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140
++ ++DR+ + + ++E++G +IL DL Q + + + LH DD + ++K++T
Sbjct: 124 NMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSARKIMT 183
Query: 141 AMSRRMSRNK 150
++RR++ NK
Sbjct: 184 GIARRLATNK 193
>sp|Q9VRL2|GOSR2_DROME Probable Golgi SNAP receptor complex member 2 OS=Drosophila
melanogaster GN=membrin PE=2 SV=1
Length = 216
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 104 GVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM--SRNKWIIGTVVAVLV 161
G IL+ L SQR +L AH + + + S + + RR+ R +I G VV +L+
Sbjct: 147 GSGILESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGVVVTLLI 206
Query: 162 IAIILILYF 170
IA LI+YF
Sbjct: 207 IA--LIIYF 213
>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1
Length = 219
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 63 ADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAH 122
AD L + + + ++ + Q + +K+S+R + ++ + GV+IL + QR L A
Sbjct: 110 ADLLGRGSGEGAHILQIFDEEAQGMNSVKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQ 169
Query: 123 NTLHGVDDNVSKSKKVLTAMSRRMSRNKWI-IGTVVAVLVIAIILILY 169
V + V S VL + RR + WI ++A LVI + I +
Sbjct: 170 RKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRW 217
>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
Length = 225
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 63 ADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAH 122
AD L ++ + + ++ + Q+ +K+S+R + E+ GV+IL + QR L A
Sbjct: 116 ADLLGRASGEGAHILQIFDEEAQAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQ 175
Query: 123 NTLHGVDDNVSKSKKVLTAMSRRMSRNKWI-IGTVVAVLVIAIILILY 169
V + V S VL + RR + WI ++A LVI + I +
Sbjct: 176 RKALDVLNTVGLSNSVLRLIERRNRVDTWIKYAGMIATLVILYLFIRW 223
>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2
SV=1
Length = 248
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + ++ R+ L+ S D + + +
Sbjct: 96 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSIRERENLMGSVRKDIESYKSGSGVNN 155
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 156 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 209
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 210 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 247
>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1
PE=1 SV=1
Length = 250
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1
PE=1 SV=1
Length = 250
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1
SV=1
Length = 250
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1
SV=2
Length = 250
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L H+ ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANR 211
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ + I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLYAF 249
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 34 LNNLKSEVKRLVSGNLNAAARDELLE---SGMADALTASADQRSRLMMSTERVNQSTDRI 90
L+NL++ K L L + +L + G+A+ + +R++ ST++VN++T+RI
Sbjct: 1591 LSNLENTTKYLQESLLKENMQKDLGKIKLEGVAEETDNLQKKLTRMLASTQKVNRATERI 1650
Query: 91 -KDSRRTMLETEELGVSI--LQDLSSQRQSL----LHAHNTLHGVDDN 131
K+S+ + E L +SI + + ++ Q+L L ++TL + N
Sbjct: 1651 FKESQDLAIAIERLQMSITEIMEKTTLNQTLDEDFLLPNSTLQNMQQN 1698
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 131 NVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170
NV ++ L R+S N+W++ + AV+++ +I+ L+F
Sbjct: 295 NVEGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFF 334
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana
GN=RH49 PE=2 SV=2
Length = 558
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL----NAAARDELLE 59
QI K+ S PNV +VLL RE ++D+N L+ E L+ G + R E L+
Sbjct: 105 QIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLD 164
Query: 60 SGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTML 98
+ L R M ++VN R+ RRT L
Sbjct: 165 FRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGL 203
>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2
SV=1
Length = 250
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMAD-----ALTASAD 71
P++ A L+ L+ ++ L + E + + + R+ L+ S D + + +
Sbjct: 98 PSLNAALMHTLQRHRDILQDYTHEFHKTKANFVAIRERENLMGSVRKDIESYKSGSGVNN 157
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R+ L + + D +++S R + ET + ++ ++++SQR L + ++ + +
Sbjct: 158 RRTELFL------KEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANR 211
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ R R+ I+G V+ V I ++L +
Sbjct: 212 FPAVNSLIQRINLRKRRDSLILGGVIGVCTILLLLYAF 249
>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster
GN=Gos28 PE=2 SV=1
Length = 232
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/158 (17%), Positives = 68/158 (43%), Gaps = 12/158 (7%)
Query: 17 PNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLE-SGMADALTASA----D 71
P A + L+ ++ L + E ++ + + R+ELL SG+A + + + +
Sbjct: 81 PASGAAAMHTLQRHREILQGYRQEFNKICANHTMRIEREELLRGSGLATSSGSPSISGLN 140
Query: 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131
+R + + +N ++ + D +ET + L +QRQ+ + + +
Sbjct: 141 RREMYLKESGHLNSASHLVNDQINIAIETRD-------HLHAQRQAFKRLQTRFNDISNR 193
Query: 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169
++ ++ + R+ I+G V+ VI ++L +
Sbjct: 194 FPLISSLIQRINIKKRRDSLILGAVIGFCVILLLLYAF 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,902,052
Number of Sequences: 539616
Number of extensions: 1572999
Number of successful extensions: 8646
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 8552
Number of HSP's gapped (non-prelim): 222
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)