Query 030656
Match_columns 174
No_of_seqs 124 out of 711
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 2E-41 4.4E-46 256.4 20.3 172 2-173 49-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.9 7.9E-21 1.7E-25 145.1 17.0 161 2-169 46-210 (213)
3 KOG3208 SNARE protein GS28 [In 99.8 5.3E-19 1.2E-23 135.0 14.1 141 20-167 84-228 (231)
4 PF12352 V-SNARE_C: Snare regi 99.6 5.8E-15 1.3E-19 94.7 8.8 66 81-146 1-66 (66)
5 PF03908 Sec20: Sec20; InterP 99.5 5.2E-13 1.1E-17 91.1 12.2 86 86-171 6-91 (92)
6 PF05008 V-SNARE: Vesicle tran 98.8 1.9E-08 4.1E-13 66.5 6.2 42 2-43 38-79 (79)
7 KOG0812 SNARE protein SED5/Syn 98.4 0.00013 2.8E-09 58.6 18.7 86 76-161 214-300 (311)
8 KOG3202 SNARE protein TLG1/Syn 98.1 0.0005 1.1E-08 54.4 16.4 139 25-167 84-229 (235)
9 PF00957 Synaptobrevin: Synapt 98.1 0.00032 6.9E-09 47.2 12.8 85 88-172 3-87 (89)
10 PF09753 Use1: Membrane fusion 98.0 0.0014 3E-08 52.5 17.7 81 91-173 170-251 (251)
11 KOG0810 SNARE protein Syntaxin 97.5 0.0077 1.7E-07 49.4 14.5 84 84-167 202-288 (297)
12 KOG3065 SNAP-25 (synaptosome-a 97.3 0.0023 4.9E-08 51.8 9.6 61 84-144 75-135 (273)
13 COG5074 t-SNARE complex subuni 97.3 0.039 8.4E-07 43.5 15.8 82 87-169 184-269 (280)
14 smart00397 t_SNARE Helical reg 97.2 0.0035 7.7E-08 38.9 7.8 60 82-141 6-65 (66)
15 KOG0860 Synaptobrevin/VAMP-lik 97.2 0.02 4.4E-07 40.2 12.1 83 87-169 28-114 (116)
16 KOG0809 SNARE protein TLG2/Syn 97.2 0.029 6.2E-07 45.6 14.3 136 15-150 130-280 (305)
17 KOG2678 Predicted membrane pro 97.1 0.092 2E-06 41.0 16.0 78 97-174 164-241 (244)
18 COG5325 t-SNARE complex subuni 96.9 0.027 5.9E-07 45.3 11.9 87 87-173 194-281 (283)
19 KOG0811 SNARE protein PEP12/VA 96.9 0.16 3.4E-06 41.1 18.6 90 83-172 175-267 (269)
20 KOG3894 SNARE protein Syntaxin 96.8 0.044 9.5E-07 44.9 12.3 99 72-170 212-314 (316)
21 KOG3385 V-SNARE [Intracellular 96.8 0.0089 1.9E-07 41.9 7.1 67 96-163 44-110 (118)
22 KOG1666 V-SNARE [Intracellular 96.5 0.059 1.3E-06 41.9 10.8 90 76-173 116-217 (220)
23 PF05739 SNARE: SNARE domain; 96.4 0.077 1.7E-06 32.9 9.2 59 88-146 4-62 (63)
24 PRK10884 SH3 domain-containing 96.1 0.35 7.7E-06 37.6 13.1 68 98-168 124-191 (206)
25 cd00193 t_SNARE Soluble NSF (N 95.5 0.17 3.7E-06 30.5 7.6 54 87-140 5-58 (60)
26 PF04210 MtrG: Tetrahydrometha 93.9 0.99 2.2E-05 28.8 8.0 57 117-173 13-70 (70)
27 KOG0860 Synaptobrevin/VAMP-lik 93.5 1.9 4E-05 30.5 11.7 48 96-143 30-77 (116)
28 PRK01026 tetrahydromethanopter 93.4 1.3 2.9E-05 28.8 8.2 56 117-172 16-72 (77)
29 PF00957 Synaptobrevin: Synapt 93.4 1.5 3.3E-05 29.0 11.3 56 107-168 32-87 (89)
30 PF09889 DUF2116: Uncharacteri 92.6 0.47 1E-05 29.4 5.1 33 137-169 26-58 (59)
31 TIGR01149 mtrG N5-methyltetrah 92.5 1.8 4E-05 27.6 8.1 55 118-172 14-69 (70)
32 COG4064 MtrG Tetrahydromethano 92.0 2 4.4E-05 27.4 7.4 52 121-172 20-72 (75)
33 PF14362 DUF4407: Domain of un 89.8 9.7 0.00021 31.0 17.0 24 150-173 262-285 (301)
34 KOG0859 Synaptobrevin/VAMP-lik 88.5 1.6 3.4E-05 33.8 5.7 84 87-170 124-207 (217)
35 PF09889 DUF2116: Uncharacteri 88.5 2.1 4.6E-05 26.5 5.3 33 141-173 27-59 (59)
36 PF12911 OppC_N: N-terminal TM 87.5 0.87 1.9E-05 27.4 3.2 31 138-168 4-34 (56)
37 PF12352 V-SNARE_C: Snare regi 86.9 5.4 0.00012 24.7 8.2 62 75-136 2-63 (66)
38 KOG3208 SNARE protein GS28 [In 86.8 14 0.00029 29.2 15.4 57 80-136 148-204 (231)
39 KOG3065 SNAP-25 (synaptosome-a 86.4 5.6 0.00012 32.4 8.1 59 84-142 214-272 (273)
40 PF09753 Use1: Membrane fusion 85.1 18 0.00038 28.8 10.9 46 116-161 188-235 (251)
41 PF06024 DUF912: Nucleopolyhed 84.7 0.5 1.1E-05 32.5 1.2 25 147-171 60-84 (101)
42 PHA03240 envelope glycoprotein 84.5 1.1 2.4E-05 35.1 3.0 21 152-172 213-233 (258)
43 PHA02650 hypothetical protein; 84.4 2.1 4.5E-05 28.0 3.8 24 151-174 51-74 (81)
44 PF03904 DUF334: Domain of unk 84.3 19 0.0004 28.5 15.8 29 99-127 110-138 (230)
45 PF00523 Fusion_gly: Fusion gl 83.9 0.61 1.3E-05 40.9 1.7 31 119-149 441-471 (490)
46 PF07798 DUF1640: Protein of u 82.3 19 0.00041 27.1 18.2 39 97-135 97-139 (177)
47 PF05283 MGC-24: Multi-glycosy 81.8 1.6 3.4E-05 33.5 3.0 26 148-174 158-185 (186)
48 PF12669 P12: Virus attachment 81.7 1 2.2E-05 27.8 1.6 8 166-173 14-21 (58)
49 KOG0862 Synaptobrevin/VAMP-lik 81.0 25 0.00054 27.6 10.6 65 88-152 134-198 (216)
50 PHA02819 hypothetical protein; 80.8 3.6 7.8E-05 26.3 3.8 24 151-174 48-71 (71)
51 PF08114 PMP1_2: ATPase proteo 80.8 2.2 4.9E-05 24.3 2.6 21 153-173 14-34 (43)
52 PHA03164 hypothetical protein; 80.6 2.4 5.2E-05 27.6 3.0 27 144-170 54-80 (88)
53 PHA02844 putative transmembran 80.2 3.2 7E-05 26.8 3.5 21 154-174 53-73 (75)
54 PF12777 MT: Microtubule-bindi 79.9 21 0.00046 29.8 9.4 94 80-173 227-327 (344)
55 TIGR01294 P_lamban phospholamb 79.5 7.3 0.00016 22.7 4.5 27 143-169 24-50 (52)
56 PF04678 DUF607: Protein of un 78.3 27 0.00058 26.4 9.6 49 124-172 65-114 (180)
57 PF14937 DUF4500: Domain of un 78.0 3.3 7.1E-05 27.6 3.1 26 147-172 34-59 (86)
58 PHA02975 hypothetical protein; 77.9 5.1 0.00011 25.5 3.9 23 151-173 46-68 (69)
59 PF10779 XhlA: Haemolysin XhlA 76.9 16 0.00035 23.2 9.1 32 137-168 38-69 (71)
60 PF04272 Phospholamban: Phosph 76.5 8.4 0.00018 22.4 4.2 26 143-168 24-49 (52)
61 PF12575 DUF3753: Protein of u 75.2 4.9 0.00011 25.9 3.3 22 151-172 50-71 (72)
62 PF06716 DUF1201: Protein of u 74.5 10 0.00022 22.3 4.2 20 151-170 9-28 (54)
63 PF15188 CCDC-167: Coiled-coil 73.7 18 0.0004 24.1 5.9 43 5-47 21-65 (85)
64 PF05961 Chordopox_A13L: Chord 72.5 6 0.00013 25.1 3.2 19 152-170 6-24 (68)
65 PHA02692 hypothetical protein; 71.6 7.5 0.00016 24.8 3.5 21 152-172 49-69 (70)
66 PHA03054 IMV membrane protein; 69.1 9.7 0.00021 24.4 3.6 19 154-172 53-71 (72)
67 PF15106 TMEM156: TMEM156 prot 68.7 7.1 0.00015 30.5 3.5 27 147-173 172-198 (226)
68 PHA02902 putative IMV membrane 68.7 11 0.00023 23.8 3.6 25 148-172 3-27 (70)
69 PRK14762 membrane protein; Pro 68.3 6.7 0.00015 19.9 2.2 15 150-164 2-16 (27)
70 PF05961 Chordopox_A13L: Chord 67.8 8.5 0.00019 24.4 3.1 19 154-172 5-23 (68)
71 PF08113 CoxIIa: Cytochrome c 66.7 16 0.00034 19.9 3.6 20 153-172 11-30 (34)
72 PF08196 UL2: UL2 protein; In 66.6 14 0.0003 22.2 3.7 24 151-174 33-56 (60)
73 PF00558 Vpu: Vpu protein; In 66.2 9.3 0.0002 25.2 3.2 20 152-171 6-25 (81)
74 PF01519 DUF16: Protein of unk 65.7 42 0.0009 23.2 7.2 38 109-146 60-97 (102)
75 KOG0811 SNARE protein PEP12/VA 64.9 23 0.0005 28.8 5.9 51 117-167 216-266 (269)
76 PF01102 Glycophorin_A: Glycop 64.8 10 0.00022 27.1 3.5 9 161-169 78-86 (122)
77 PF08802 CytB6-F_Fe-S: Cytochr 64.7 24 0.00051 20.0 4.9 27 141-167 5-31 (39)
78 PF15018 InaF-motif: TRP-inter 63.9 13 0.00028 20.9 3.0 18 156-173 14-31 (38)
79 PRK10132 hypothetical protein; 63.6 47 0.001 23.1 10.6 53 117-169 53-105 (108)
80 PF04999 FtsL: Cell division p 62.2 26 0.00057 23.4 5.1 22 143-164 6-28 (97)
81 PF14235 DUF4337: Domain of un 60.3 25 0.00054 26.1 5.0 42 5-46 53-94 (157)
82 PF11298 DUF3099: Protein of u 59.7 40 0.00087 21.8 5.3 30 138-167 9-38 (73)
83 COG3883 Uncharacterized protei 59.6 94 0.002 25.2 12.1 39 20-61 68-106 (265)
84 PF13800 Sigma_reg_N: Sigma fa 59.5 22 0.00048 23.8 4.3 15 137-151 3-17 (96)
85 PHA03049 IMV membrane protein; 59.5 15 0.00032 23.2 3.1 13 157-169 8-20 (68)
86 PF02439 Adeno_E3_CR2: Adenovi 59.3 19 0.00041 20.2 3.2 16 154-169 10-25 (38)
87 PF13800 Sigma_reg_N: Sigma fa 58.9 26 0.00057 23.4 4.6 27 141-167 3-29 (96)
88 PHA03049 IMV membrane protein; 58.9 16 0.00035 23.1 3.2 21 151-171 5-25 (68)
89 PF10717 ODV-E18: Occlusion-de 58.2 16 0.00034 24.3 3.1 13 158-170 32-44 (85)
90 PF06008 Laminin_I: Laminin Do 57.6 97 0.0021 24.7 12.2 32 76-107 187-218 (264)
91 PF11337 DUF3139: Protein of u 57.5 13 0.00029 24.4 2.8 11 150-160 5-15 (85)
92 PF13253 DUF4044: Protein of u 56.5 26 0.00056 19.3 3.4 26 145-170 6-31 (35)
93 PF06696 Strep_SA_rep: Strepto 56.5 26 0.00056 17.8 4.2 22 22-43 2-23 (25)
94 cd02682 MIT_AAA_Arch MIT: doma 56.4 50 0.0011 21.4 5.3 39 3-41 31-70 (75)
95 PF10805 DUF2730: Protein of u 56.2 51 0.0011 22.7 5.7 40 5-44 51-91 (106)
96 PF10183 ESSS: ESSS subunit of 56.1 15 0.00032 25.4 3.0 22 150-171 60-81 (105)
97 PF05478 Prominin: Prominin; 55.7 1.8E+02 0.004 27.3 19.0 89 82-170 336-433 (806)
98 PRK14750 kdpF potassium-transp 55.1 30 0.00065 18.1 3.3 8 153-160 6-13 (29)
99 PF10661 EssA: WXG100 protein 53.7 17 0.00037 26.7 3.1 10 161-170 129-138 (145)
100 PF01102 Glycophorin_A: Glycop 53.5 20 0.00044 25.5 3.4 14 154-167 68-81 (122)
101 PF15202 Adipogenin: Adipogeni 53.5 26 0.00057 22.3 3.5 24 150-173 16-39 (81)
102 PRK10884 SH3 domain-containing 53.0 1.1E+02 0.0023 23.8 13.0 99 72-170 91-189 (206)
103 PF02009 Rifin_STEVOR: Rifin/s 52.8 16 0.00034 30.2 3.1 12 24-35 49-60 (299)
104 PF04880 NUDE_C: NUDE protein, 52.7 9.3 0.0002 28.8 1.6 29 8-41 19-47 (166)
105 KOG1693 emp24/gp25L/p24 family 51.5 98 0.0021 24.1 7.0 23 151-173 178-200 (209)
106 PF02419 PsbL: PsbL protein; 51.1 35 0.00075 18.9 3.3 19 152-170 17-35 (37)
107 PF09006 Surfac_D-trimer: Lung 50.3 51 0.0011 19.3 4.7 32 22-61 3-34 (46)
108 PF09011 HMG_box_2: HMG-box do 50.2 43 0.00093 21.0 4.3 33 3-35 34-66 (73)
109 PTZ00382 Variant-specific surf 50.1 3.9 8.4E-05 27.9 -0.7 16 158-173 77-92 (96)
110 KOG1656 Protein involved in gl 49.9 68 0.0015 25.0 5.9 45 106-151 82-126 (221)
111 PRK09759 small toxic polypepti 49.7 12 0.00026 22.4 1.5 20 149-168 3-22 (50)
112 PTZ00046 rifin; Provisional 49.6 19 0.00041 30.5 3.2 22 152-173 317-338 (358)
113 COG5074 t-SNARE complex subuni 49.4 1.4E+02 0.003 24.0 10.1 30 124-153 228-257 (280)
114 COG4499 Predicted membrane pro 49.4 22 0.00049 30.4 3.5 57 101-173 188-244 (434)
115 PF00505 HMG_box: HMG (high mo 49.0 59 0.0013 19.7 5.5 36 3-38 30-65 (69)
116 PF02936 COX4: Cytochrome c ox 48.4 30 0.00065 25.3 3.7 25 148-172 73-97 (142)
117 KOG3156 Uncharacterized membra 48.2 1.3E+02 0.0029 23.6 12.1 38 5-42 103-140 (220)
118 TIGR01477 RIFIN variant surfac 48.2 21 0.00045 30.2 3.2 18 152-169 313-330 (353)
119 PF10458 Val_tRNA-synt_C: Valy 48.1 46 0.001 20.7 4.1 31 14-44 35-65 (66)
120 COG5052 YOP1 Protein involved 48.0 88 0.0019 23.9 6.2 40 116-156 3-42 (186)
121 PF10151 DUF2359: Uncharacteri 47.7 1.4E+02 0.0031 26.3 8.3 42 130-171 243-284 (469)
122 KOG2911 Uncharacterized conser 47.4 1.9E+02 0.0042 25.2 12.5 54 87-140 303-358 (439)
123 PTZ00464 SNF-7-like protein; P 47.3 1.4E+02 0.0029 23.4 12.2 45 98-143 104-148 (211)
124 PF10168 Nup88: Nuclear pore c 47.2 1.4E+02 0.0031 27.8 8.7 29 102-130 685-713 (717)
125 PF04639 Baculo_E56: Baculovir 46.7 8.7 0.00019 31.4 0.7 19 151-169 280-298 (305)
126 PF07835 COX4_pro_2: Bacterial 46.5 28 0.00061 20.1 2.7 18 151-168 24-41 (44)
127 PF04834 Adeno_E3_14_5: Early 46.4 23 0.0005 24.2 2.6 17 156-172 31-47 (97)
128 PF07851 TMPIT: TMPIT-like pro 46.3 1.8E+02 0.0039 24.5 9.7 30 109-138 68-97 (330)
129 COG4068 Uncharacterized protei 45.9 71 0.0015 19.8 5.0 22 138-160 32-53 (64)
130 PF11044 TMEMspv1-c74-12: Plec 45.6 53 0.0011 19.1 3.6 9 164-172 21-29 (49)
131 PF15168 TRIQK: Triple QxxK/R 45.5 51 0.0011 21.5 4.0 19 154-172 55-73 (79)
132 PF06072 Herpes_US9: Alphaherp 45.5 73 0.0016 19.7 4.8 14 133-146 9-22 (60)
133 TIGR03142 cytochro_ccmI cytoch 45.2 1E+02 0.0022 21.4 7.1 18 155-172 97-114 (117)
134 COG5415 Predicted integral mem 45.2 1.5E+02 0.0033 23.3 8.0 33 117-149 16-48 (251)
135 PF11221 Med21: Subunit 21 of 45.2 1.1E+02 0.0024 22.1 6.4 42 4-45 81-124 (144)
136 KOG4603 TBP-1 interacting prot 44.2 61 0.0013 24.6 4.8 44 3-46 100-144 (201)
137 PF05478 Prominin: Prominin; 44.2 2.8E+02 0.0061 26.1 11.4 79 86-166 355-433 (806)
138 cd00922 Cyt_c_Oxidase_IV Cytoc 44.0 38 0.00083 24.5 3.7 23 150-172 75-97 (136)
139 PRK09738 small toxic polypepti 42.5 16 0.00035 22.0 1.3 20 149-168 5-24 (52)
140 PF09125 COX2-transmemb: Cytoc 42.5 61 0.0013 18.0 3.5 12 149-160 14-25 (38)
141 PF10661 EssA: WXG100 protein 42.2 43 0.00092 24.6 3.7 20 154-173 125-144 (145)
142 CHL00038 psbL photosystem II p 42.0 50 0.0011 18.3 3.0 18 152-169 18-35 (38)
143 PF02532 PsbI: Photosystem II 41.9 61 0.0013 17.9 3.3 15 148-162 3-17 (36)
144 PF05399 EVI2A: Ectropic viral 41.5 39 0.00084 26.5 3.5 16 154-169 133-148 (227)
145 PF09788 Tmemb_55A: Transmembr 41.5 24 0.00053 28.3 2.5 28 141-168 188-215 (256)
146 PRK00753 psbL photosystem II r 40.8 46 0.00099 18.6 2.8 18 152-169 19-36 (39)
147 PF00261 Tropomyosin: Tropomyo 40.7 1.8E+02 0.0039 22.8 10.4 54 80-133 91-144 (237)
148 PF01708 Gemini_mov: Geminivir 40.5 8.8 0.00019 25.8 -0.1 23 152-174 38-60 (91)
149 PRK10929 putative mechanosensi 40.4 3.8E+02 0.0082 26.5 14.0 41 105-145 268-308 (1109)
150 KOG4684 Uncharacterized conser 40.2 53 0.0012 25.9 4.1 29 139-167 198-226 (275)
151 PF03908 Sec20: Sec20; InterP 40.2 1.1E+02 0.0024 20.2 11.9 37 93-129 27-63 (92)
152 PF02009 Rifin_STEVOR: Rifin/s 39.7 39 0.00084 27.9 3.5 11 22-32 54-64 (299)
153 PHA02849 putative transmembran 39.0 57 0.0012 21.3 3.5 9 152-160 20-28 (82)
154 cd01145 TroA_c Periplasmic bin 39.0 85 0.0018 23.9 5.2 45 3-47 119-163 (203)
155 KOG4075 Cytochrome c oxidase, 38.8 36 0.00077 25.6 2.9 31 142-172 92-122 (167)
156 PF00261 Tropomyosin: Tropomyo 38.8 1.9E+02 0.0042 22.7 11.1 26 110-135 128-153 (237)
157 PRK05529 cell division protein 38.4 30 0.00065 27.7 2.7 22 139-160 24-45 (255)
158 KOG2736 Presenilin [Signal tra 37.8 44 0.00096 28.5 3.6 28 147-174 70-97 (406)
159 PRK11637 AmiB activator; Provi 37.6 2.6E+02 0.0057 23.9 12.5 25 21-45 43-67 (428)
160 COG0342 SecD Preprotein transl 37.6 39 0.00084 30.0 3.4 26 148-173 342-367 (506)
161 PF03302 VSP: Giardia variant- 37.4 17 0.00038 31.1 1.2 21 154-174 374-394 (397)
162 PF05545 FixQ: Cbb3-type cytoc 36.9 51 0.0011 19.1 2.9 12 158-169 17-28 (49)
163 PF06682 DUF1183: Protein of u 36.8 35 0.00077 28.4 2.9 10 161-170 165-174 (318)
164 PRK09793 methyl-accepting prot 36.6 3E+02 0.0065 24.2 10.9 42 97-138 319-360 (533)
165 KOG0994 Extracellular matrix g 36.5 4.6E+02 0.01 26.4 10.7 110 25-145 1164-1275(1758)
166 PF00558 Vpu: Vpu protein; In 36.5 41 0.0009 22.2 2.6 11 159-169 17-27 (81)
167 PF01297 TroA: Periplasmic sol 36.3 1.1E+02 0.0024 24.0 5.6 45 4-48 104-148 (256)
168 PRK14585 pgaD putative PGA bio 36.0 65 0.0014 23.4 3.7 25 147-172 50-74 (137)
169 PF06459 RR_TM4-6: Ryanodine R 35.6 48 0.001 27.0 3.4 33 137-172 161-193 (274)
170 PF05393 Hum_adeno_E3A: Human 35.5 66 0.0014 21.6 3.4 20 152-171 38-57 (94)
171 PLN03094 Substrate binding sub 35.0 45 0.00098 28.4 3.3 31 141-171 77-107 (370)
172 PF11214 Med2: Mediator comple 34.8 1.5E+02 0.0032 20.6 5.2 43 3-45 27-72 (105)
173 PRK15041 methyl-accepting chem 34.5 3.3E+02 0.0072 24.2 14.5 22 21-42 88-109 (554)
174 PF08651 DASH_Duo1: DASH compl 33.9 1.3E+02 0.0029 19.5 6.1 35 111-145 3-37 (78)
175 COG1033 Predicted exporters of 33.9 66 0.0014 30.0 4.3 70 96-173 524-593 (727)
176 COG4942 Membrane-bound metallo 33.3 3.3E+02 0.0071 23.7 9.0 60 86-145 43-102 (420)
177 PF14283 DUF4366: Domain of un 33.0 7.5 0.00016 30.6 -1.6 13 162-174 172-184 (218)
178 cd00928 Cyt_c_Oxidase_VIIa Cyt 33.0 1.1E+02 0.0023 18.7 3.8 26 147-172 26-51 (55)
179 PF06103 DUF948: Bacterial pro 32.8 1.4E+02 0.0031 19.4 8.8 24 106-129 48-71 (90)
180 PF12495 Vip3A_N: Vegetative i 32.7 1.9E+02 0.0041 20.8 8.5 79 82-160 53-131 (177)
181 PRK10404 hypothetical protein; 32.6 1.6E+02 0.0036 20.1 10.4 23 146-168 76-98 (101)
182 PRK10856 cytoskeletal protein 32.1 37 0.0008 28.4 2.3 13 23-35 15-27 (331)
183 PF04212 MIT: MIT (microtubule 32.0 1.2E+02 0.0025 18.7 4.2 25 16-40 44-68 (69)
184 PHA02655 hypothetical protein; 31.9 28 0.0006 22.4 1.2 21 154-174 71-91 (94)
185 PRK11281 hypothetical protein; 31.9 4.4E+02 0.0095 26.1 9.6 111 22-133 70-180 (1113)
186 PHA03240 envelope glycoprotein 31.5 52 0.0011 26.0 2.8 17 150-166 214-230 (258)
187 PF15508 NAAA-beta: beta subun 31.5 1.2E+02 0.0026 20.2 4.4 29 15-45 12-40 (95)
188 PF14914 LRRC37AB_C: LRRC37A/B 31.4 61 0.0013 23.9 3.0 14 146-159 116-129 (154)
189 PRK11901 hypothetical protein; 31.3 57 0.0012 27.2 3.2 18 150-167 37-54 (327)
190 MTH00158 ATP8 ATP synthase F0 31.1 89 0.0019 16.5 3.6 21 150-170 9-29 (32)
191 PF09057 Smac_DIABLO: Second M 31.0 2.7E+02 0.0059 22.1 8.7 44 7-50 108-151 (234)
192 TIGR01478 STEVOR variant surfa 30.9 54 0.0012 26.9 2.9 7 55-61 117-123 (295)
193 KOG1094 Discoidin domain recep 30.8 61 0.0013 29.7 3.5 20 151-170 395-414 (807)
194 PF08006 DUF1700: Protein of u 30.8 95 0.0021 23.2 4.2 27 4-30 6-32 (181)
195 cd01018 ZntC Metal binding pro 30.6 1.3E+02 0.0028 23.9 5.2 45 3-47 123-167 (266)
196 PRK15041 methyl-accepting chem 30.5 3.9E+02 0.0084 23.7 11.0 27 116-142 342-368 (554)
197 PF03554 Herpes_UL73: UL73 vir 30.4 78 0.0017 20.9 3.2 20 153-172 51-70 (82)
198 PF12958 DUF3847: Protein of u 30.2 1.7E+02 0.0037 19.5 6.6 48 112-159 4-54 (86)
199 PTZ00370 STEVOR; Provisional 30.2 56 0.0012 26.9 2.9 7 55-61 116-122 (296)
200 PF09815 XK-related: XK-relate 29.6 71 0.0015 26.5 3.6 19 156-174 312-330 (332)
201 PRK09458 pspB phage shock prot 29.4 84 0.0018 20.4 3.1 16 155-170 7-22 (75)
202 PF13198 DUF4014: Protein of u 29.4 1.4E+02 0.003 19.2 4.0 15 142-156 9-23 (72)
203 PF13997 YqjK: YqjK-like prote 29.2 1.6E+02 0.0034 18.8 6.9 38 108-145 2-39 (73)
204 PF08317 Spc7: Spc7 kinetochor 28.9 3.3E+02 0.0072 22.5 11.1 41 4-45 157-197 (325)
205 PTZ00046 rifin; Provisional 28.7 67 0.0014 27.2 3.2 19 150-168 320-338 (358)
206 PF05814 DUF843: Baculovirus p 28.6 82 0.0018 20.9 3.0 21 149-169 24-44 (83)
207 COG4640 Predicted membrane pro 28.5 71 0.0015 27.5 3.4 13 149-161 50-62 (465)
208 PF12409 P5-ATPase: P5-type AT 28.4 89 0.0019 21.7 3.4 22 149-170 15-36 (119)
209 TIGR01477 RIFIN variant surfac 28.3 68 0.0015 27.1 3.2 24 148-171 313-336 (353)
210 PF09451 ATG27: Autophagy-rela 27.8 66 0.0014 25.9 3.0 6 153-158 204-209 (268)
211 PF06679 DUF1180: Protein of u 27.8 86 0.0019 23.5 3.4 16 154-169 99-114 (163)
212 COG3149 PulM Type II secretory 27.7 78 0.0017 24.0 3.1 24 146-169 33-56 (181)
213 PRK10772 cell division protein 27.7 1.3E+02 0.0028 21.0 4.0 28 140-167 13-41 (108)
214 PRK15048 methyl-accepting chem 27.6 4.3E+02 0.0092 23.3 10.9 21 116-136 340-360 (553)
215 PF10140 YukC: WXG100 protein 27.4 20 0.00044 30.3 0.0 37 137-173 181-218 (359)
216 PF10389 CoatB: Bacteriophage 27.3 88 0.0019 18.3 2.7 14 159-173 29-42 (46)
217 PF15188 CCDC-167: Coiled-coil 27.3 1.9E+02 0.0042 19.2 5.8 19 23-41 10-28 (85)
218 COG5509 Uncharacterized small 27.3 1.6E+02 0.0035 18.3 4.7 37 21-60 28-64 (65)
219 PF13801 Metal_resist: Heavy-m 27.1 1.9E+02 0.0042 19.1 8.0 38 9-46 36-73 (125)
220 PF05115 PetL: Cytochrome B6-F 26.9 1.1E+02 0.0024 16.3 3.7 22 151-172 4-25 (31)
221 PHA02947 S-S bond formation pa 26.9 92 0.002 24.4 3.5 17 7-23 69-85 (215)
222 PF07889 DUF1664: Protein of u 26.9 2.4E+02 0.0052 20.2 10.0 36 109-144 75-110 (126)
223 COG5325 t-SNARE complex subuni 26.8 1.8E+02 0.0039 23.8 5.2 29 117-145 231-259 (283)
224 PF07889 DUF1664: Protein of u 26.7 2.4E+02 0.0053 20.2 10.6 34 95-128 75-108 (126)
225 PF04728 LPP: Lipoprotein leuc 26.7 1.5E+02 0.0032 18.1 3.7 23 22-44 14-36 (56)
226 PF08999 SP_C-Propep: Surfacta 26.7 1.6E+02 0.0034 19.5 4.0 18 152-169 38-55 (93)
227 cd01019 ZnuA Zinc binding prot 26.6 1.9E+02 0.0041 23.3 5.5 45 3-47 132-176 (286)
228 TIGR00606 rad50 rad50. This fa 26.6 6.6E+02 0.014 25.2 11.6 31 18-48 881-911 (1311)
229 PHA02955 hypothetical protein; 26.6 87 0.0019 24.6 3.3 12 12-23 74-85 (213)
230 PF04420 CHD5: CHD5-like prote 26.3 2E+02 0.0043 21.2 5.2 15 3-17 47-61 (161)
231 PF12709 Kinetocho_Slk19: Cent 26.3 1.9E+02 0.0042 19.3 4.5 27 21-47 45-71 (87)
232 KOG3202 SNARE protein TLG1/Syn 26.3 3.4E+02 0.0073 21.6 8.9 64 70-137 140-208 (235)
233 PF10808 DUF2542: Protein of u 26.3 45 0.00098 21.7 1.4 22 151-174 58-79 (79)
234 PF01848 HOK_GEF: Hok/gef fami 26.1 47 0.001 19.2 1.3 16 152-167 3-18 (43)
235 MTH00260 ATP8 ATP synthase F0 26.1 1.5E+02 0.0033 17.8 3.6 21 150-170 9-29 (53)
236 COG4396 Mu-like prophage host- 26.0 1.3E+02 0.0028 22.1 3.9 50 8-62 37-86 (170)
237 PF15183 MRAP: Melanocortin-2 26.0 1.1E+02 0.0023 20.4 3.2 15 153-167 42-56 (90)
238 COG4839 FtsL Protein required 26.0 2.4E+02 0.0052 20.0 5.1 23 149-171 37-59 (120)
239 PF15145 DUF4577: Domain of un 25.9 96 0.0021 21.8 3.1 20 151-170 62-81 (128)
240 PF11026 DUF2721: Protein of u 25.9 2.5E+02 0.0053 19.9 7.4 20 136-155 49-69 (130)
241 PF06084 Cytomega_TRL10: Cytom 25.8 29 0.00062 24.5 0.5 7 163-169 74-80 (150)
242 PHA03386 P10 fibrous body prot 25.7 2.2E+02 0.0048 19.3 4.9 26 108-133 35-60 (94)
243 PF09577 Spore_YpjB: Sporulati 25.7 3.4E+02 0.0074 21.5 12.0 23 151-173 201-223 (232)
244 PF06009 Laminin_II: Laminin D 25.6 23 0.0005 25.5 0.0 43 96-138 11-53 (138)
245 PF11947 DUF3464: Protein of u 25.6 1.6E+02 0.0035 21.8 4.5 30 137-170 56-85 (153)
246 PHA00646 hypothetical protein 25.4 1.4E+02 0.0031 18.6 3.4 20 151-170 37-56 (65)
247 PF06422 PDR_CDR: CDR ABC tran 24.9 1.1E+02 0.0023 20.9 3.2 20 145-164 47-66 (103)
248 PRK12659 putative monovalent c 24.9 1.2E+02 0.0027 21.2 3.6 24 151-174 77-100 (117)
249 PRK09545 znuA high-affinity zi 24.9 2E+02 0.0044 23.6 5.5 45 3-47 156-200 (311)
250 KOG4433 Tweety transmembrane/c 24.8 5E+02 0.011 23.2 8.6 38 76-113 115-152 (526)
251 KOG0809 SNARE protein TLG2/Syn 24.8 96 0.0021 25.6 3.4 6 129-134 252-257 (305)
252 PHA02662 ORF131 putative membr 24.7 97 0.0021 24.5 3.2 18 150-167 187-204 (226)
253 PF02167 Cytochrom_C1: Cytochr 24.6 1.6E+02 0.0034 23.2 4.5 19 153-171 195-213 (219)
254 PF09798 LCD1: DNA damage chec 24.4 1.6E+02 0.0034 27.2 4.9 47 1-47 2-48 (654)
255 PF06394 Pepsin-I3: Pepsin inh 24.4 90 0.002 20.3 2.6 21 24-44 45-65 (76)
256 PF05781 MRVI1: MRVI1 protein; 24.3 2.9E+02 0.0063 24.8 6.5 13 135-147 465-477 (538)
257 KOG3443 Uncharacterized conser 24.3 3.2E+02 0.0069 20.7 9.3 50 106-155 32-81 (184)
258 PF11057 Cortexin: Cortexin of 24.1 1.1E+02 0.0024 19.9 2.9 21 152-172 30-51 (81)
259 PRK06007 fliF flagellar MS-rin 24.1 1E+02 0.0022 27.6 3.8 23 151-173 440-462 (542)
260 PRK06870 secG preprotein trans 23.8 1.3E+02 0.0028 19.2 3.4 21 149-169 53-73 (76)
261 PTZ00087 thrombosponding-relat 23.8 67 0.0014 26.3 2.3 18 154-171 304-321 (340)
262 PF06160 EzrA: Septation ring 23.8 5.4E+02 0.012 23.1 12.2 44 5-48 291-336 (560)
263 PF02411 MerT: MerT mercuric t 23.7 2E+02 0.0044 20.2 4.5 26 148-173 90-115 (116)
264 cd01020 TroA_b Metal binding p 23.7 2.1E+02 0.0046 22.7 5.2 44 4-47 107-150 (264)
265 PF06305 DUF1049: Protein of u 23.7 1.3E+02 0.0028 18.3 3.2 22 22-43 45-66 (68)
266 PRK12660 putative monovalent c 23.2 1.4E+02 0.003 20.9 3.6 23 152-174 75-97 (114)
267 cd01137 PsaA Metal binding pro 22.9 2.1E+02 0.0046 23.1 5.1 43 4-46 129-171 (287)
268 cd02656 MIT MIT: domain contai 22.8 2E+02 0.0044 17.9 4.7 37 6-42 34-71 (75)
269 PF11353 DUF3153: Protein of u 22.8 1.2E+02 0.0027 23.3 3.6 17 151-167 185-201 (209)
270 TIGR03521 GldG gliding-associa 22.6 1.6E+02 0.0034 26.4 4.7 64 101-171 483-546 (552)
271 cd01016 TroA Metal binding pro 22.6 2.2E+02 0.0047 22.8 5.1 44 3-46 112-155 (276)
272 CHL00106 petL cytochrome b6/f 22.6 1.4E+02 0.003 15.9 3.5 22 151-172 4-25 (31)
273 PF03672 UPF0154: Uncharacteri 22.5 1.7E+02 0.0037 18.4 3.5 6 154-159 6-11 (64)
274 cd01017 AdcA Metal binding pro 22.4 2.4E+02 0.0051 22.6 5.3 44 4-47 125-168 (282)
275 TIGR03772 anch_rpt_subst ancho 22.4 2.1E+02 0.0045 25.4 5.2 44 3-46 322-365 (479)
276 PF05377 FlaC_arch: Flagella a 22.3 2E+02 0.0042 17.5 4.5 38 6-44 3-40 (55)
277 PF05399 EVI2A: Ectropic viral 22.3 98 0.0021 24.3 2.9 16 151-166 133-148 (227)
278 KOG0161 Myosin class II heavy 22.2 9.6E+02 0.021 25.5 13.6 68 73-140 1849-1916(1930)
279 KOG0971 Microtubule-associated 22.2 7.5E+02 0.016 24.2 12.2 55 67-122 364-426 (1243)
280 cd01390 HMGB-UBF_HMG-box HMGB- 22.1 1.8E+02 0.004 17.1 5.0 30 4-33 31-60 (66)
281 COG1766 fliF Flagellar basal b 22.0 94 0.002 28.0 3.1 23 151-173 444-466 (545)
282 PF02238 COX7a: Cytochrome c o 21.7 2E+02 0.0044 17.5 3.9 24 147-170 24-47 (56)
283 COG4499 Predicted membrane pro 21.5 2E+02 0.0043 24.9 4.7 28 146-173 214-241 (434)
284 PRK10381 LPS O-antigen length 21.3 2.2E+02 0.0048 24.2 5.1 18 142-159 32-49 (377)
285 PF06120 Phage_HK97_TLTM: Tail 21.2 4.8E+02 0.01 21.6 16.3 45 4-48 56-104 (301)
286 PF07664 FeoB_C: Ferrous iron 21.1 1.8E+02 0.004 17.1 3.4 17 152-168 4-20 (54)
287 PF05151 PsbM: Photosystem II 21.0 1.5E+02 0.0033 15.8 3.6 11 161-171 18-28 (31)
288 PF00517 GP41: Retroviral enve 21.0 3.9E+02 0.0086 20.5 8.2 38 90-127 103-140 (204)
289 PF06363 Picorna_P3A: Picornav 21.0 2.8E+02 0.006 18.8 4.4 39 135-173 54-92 (100)
290 PF01788 PsbJ: PsbJ; InterPro 21.0 1.8E+02 0.0038 16.5 3.5 19 152-170 12-30 (40)
291 PF14182 YgaB: YgaB-like prote 21.0 2.6E+02 0.0056 18.4 4.9 39 5-43 26-65 (79)
292 PF03669 UPF0139: Uncharacteri 20.9 1.4E+02 0.0029 20.6 3.1 22 143-164 45-66 (103)
293 PTZ00464 SNF-7-like protein; P 20.8 4.1E+02 0.0089 20.7 12.9 20 105-124 101-120 (211)
294 PF14257 DUF4349: Domain of un 20.8 1E+02 0.0022 24.5 2.8 23 106-128 166-188 (262)
295 PHA03099 epidermal growth fact 20.6 92 0.002 22.5 2.2 21 152-173 106-126 (139)
296 PF03840 SecG: Preprotein tran 20.5 1.2E+02 0.0026 19.2 2.7 21 148-168 51-71 (74)
297 PF05957 DUF883: Bacterial pro 20.4 2.7E+02 0.0057 18.3 12.1 39 116-154 38-77 (94)
298 TIGR03752 conj_TIGR03752 integ 20.4 6.1E+02 0.013 22.5 7.8 23 23-45 64-86 (472)
299 PRK09731 putative general secr 20.3 1.5E+02 0.0032 22.6 3.5 20 150-169 38-57 (178)
300 PF13396 PLDc_N: Phospholipase 20.2 82 0.0018 17.7 1.7 21 150-170 21-41 (46)
301 PF13163 DUF3999: Protein of u 20.1 84 0.0018 27.2 2.4 22 148-169 406-427 (429)
302 PF11877 DUF3397: Protein of u 20.1 3.1E+02 0.0067 19.0 5.0 34 137-170 45-78 (116)
303 PF10854 DUF2649: Protein of u 20.1 2.3E+02 0.005 17.6 3.6 19 151-169 39-57 (67)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-41 Score=256.44 Aligned_cols=172 Identities=53% Similarity=0.760 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCcccccHHHHHHHhhhhH
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTE 81 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~r~~ll~~~~ 81 (174)
.++|+|||+|++.+||+.|..|..|+++|++++++++.++++..+......+|+++++....|+.....++|++++++++
T Consensus 49 ~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTe 128 (220)
T KOG1666|consen 49 NELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTE 128 (220)
T ss_pred HHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhH
Confidence 47899999999999999999999999999999999999999988443446799999988765555567899999999999
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 82 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLV 161 (174)
Q Consensus 82 ~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~ 161 (174)
+|.+++++|.+|+|++.|||+||.+|+++|++|||+|++++..+.++++++++|+++++.|.||+.+|||++++||++++
T Consensus 129 rLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~ 208 (220)
T KOG1666|consen 129 RLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLV 208 (220)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 030656 162 IAIILILYFKLA 173 (174)
Q Consensus 162 ~~i~~v~~~k~~ 173 (174)
++|++++|+||+
T Consensus 209 ~~il~ilY~kf~ 220 (220)
T KOG1666|consen 209 LAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHhcC
Confidence 999999999995
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.9e-21 Score=145.09 Aligned_cols=161 Identities=19% Similarity=0.281 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cHHhhHHhhcCCCCCcccccHHHHHHHh
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL----NAAARDELLESGMADALTASADQRSRLM 77 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~R~~Ll~~~~~~~~~~~~~~r~~ll 77 (174)
+..|..|+.-+...||+.|.+..-++.+.+.++..++..+++...... ...+|.+|+++.++.++.+..-..+..+
T Consensus 46 ~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el 125 (213)
T KOG3251|consen 46 ASRCQRLDVLVSKEPPKSRQAARLRVDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEEL 125 (213)
T ss_pred HHHHHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHH
Confidence 457889999999999999888888899999999999999987766543 3678999998877553222211123333
Q ss_pred hhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 78 MSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV 157 (174)
Q Consensus 78 ~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii 157 (174)
+-.+.+.+|++.+++....|.+++++|..||-.|.++++++.++.+.||.|+.+|+.|.||...||+|+|+++
T Consensus 126 -------~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~ 198 (213)
T KOG3251|consen 126 -------QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGV 198 (213)
T ss_pred -------HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 030656 158 AVLVIAIILILY 169 (174)
Q Consensus 158 ~~l~~~i~~v~~ 169 (174)
++|++++++++|
T Consensus 199 i~~~v~~yl~~~ 210 (213)
T KOG3251|consen 199 ILTLVIMYLFYR 210 (213)
T ss_pred HHHHHHHHHHHH
Confidence 998777665533
No 3
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.3e-19 Score=134.99 Aligned_cols=141 Identities=22% Similarity=0.292 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCc---ccc-cHHHHHHHhhhhHHhhchhHHHHHHHH
Q 030656 20 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA---LTA-SADQRSRLMMSTERVNQSTDRIKDSRR 95 (174)
Q Consensus 20 r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~---~~~-~~~~r~~ll~~~~~l~~~~~~L~~s~r 95 (174)
-+.....+++|++.|.++..+|++.+.+++...+|+.|++++..+. +.. +...+ +.+.+..++|+++.+
T Consensus 84 ~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~-------e~~lkE~~~in~s~~ 156 (231)
T KOG3208|consen 84 SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRG-------EMYLKEHDHINNSIR 156 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchH-------HHHHHHhccccchHH
Confidence 4789999999999999999999999999988899999998865443 111 11111 345556778889999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
+++|+.++|.+|.++|+.||..+.+++.++.++...+|..|.+|..|++|..+|.+|+.+||.+|+++++|+
T Consensus 157 ~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 157 LVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFY 228 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997766544
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.61 E-value=5.8e-15 Score=94.68 Aligned_cols=66 Identities=38% Similarity=0.595 Sum_probs=62.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
+.+.+++++|++|.++++||+++|.+|+.+|..||++|.++++++.++++.++.|+++|+.|.||.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 356778889999999999999999999999999999999999999999999999999999999984
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.51 E-value=5.2e-13 Score=91.10 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII 165 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~ 165 (174)
-+..|.++++++.+..+.|..+++.|..|+++|.++++...++.+.+..|+++++.+.|+..+||+++|+.+++++++++
T Consensus 6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 030656 166 LILYFK 171 (174)
Q Consensus 166 ~v~~~k 171 (174)
+|+|.+
T Consensus 86 yI~~rR 91 (92)
T PF03908_consen 86 YILWRR 91 (92)
T ss_pred HHhhhc
Confidence 999865
No 6
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=98.79 E-value=1.9e-08 Score=66.45 Aligned_cols=42 Identities=40% Similarity=0.642 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKR 43 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~ 43 (174)
..+|+|||+|++++|++.|..|..+++.|+.+++.++++|++
T Consensus 38 ~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 38 EELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999999999999999999864
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00013 Score=58.63 Aligned_cols=86 Identities=17% Similarity=0.328 Sum_probs=71.2
Q ss_pred Hhhhh-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 76 LMMST-ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIG 154 (174)
Q Consensus 76 ll~~~-~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~ 154 (174)
++.+. +....-...+.+......|.-+|-.+...-...|.|.++++.+++++++-+++.|.+.|...--|+-.|+|+++
T Consensus 214 ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmv 293 (311)
T KOG0812|consen 214 LLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMV 293 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHH
Confidence 34444 34444456667777788888888888889999999999999999999999999999999999999999999997
Q ss_pred HHHHHHH
Q 030656 155 TVVAVLV 161 (174)
Q Consensus 155 ~ii~~l~ 161 (174)
=|++|++
T Consensus 294 kiF~i~i 300 (311)
T KOG0812|consen 294 KIFGILI 300 (311)
T ss_pred HHHHHHH
Confidence 7666653
No 8
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0005 Score=54.37 Aligned_cols=139 Identities=14% Similarity=0.211 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCc----c---cccHHHHHHHhhhhHHhhchhHHHHHHHHHH
Q 030656 25 AKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADA----L---TASADQRSRLMMSTERVNQSTDRIKDSRRTM 97 (174)
Q Consensus 25 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~----~---~~~~~~r~~ll~~~~~l~~~~~~L~~s~r~~ 97 (174)
..+.+.+..+..++..|.... ..+...|..|++....++ . .+..............+.++...|+.....+
T Consensus 84 ~~i~~lr~q~~~~~~~~~~~~--~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti 161 (235)
T KOG3202|consen 84 RFIDNLRTQLRQMKSKMAMSG--FANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATV 161 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--cccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665511 111123777775532221 0 0001011111222345667778899999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
.-..++|.++-++|..|...|..-...++.+.+.+.+..+-+..+++ .+..|-.|++|++++++++++
T Consensus 162 ~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~--~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 162 QRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR--MASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 344444333333333333333
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.06 E-value=0.00032 Score=47.17 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
+.+...+..++++.++..+.+..+..-.|.|.....+..++......=.+--+.+.|+++-.++-+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 45677888899999999999999999999999999999999999999999999999999988888877777777777776
Q ss_pred HHHHh
Q 030656 168 LYFKL 172 (174)
Q Consensus 168 ~~~k~ 172 (174)
+++-+
T Consensus 83 i~~~~ 87 (89)
T PF00957_consen 83 IIIVI 87 (89)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 66543
No 10
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.01 E-value=0.0014 Score=52.50 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 030656 91 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGT-VVAVLVIAIILILY 169 (174)
Q Consensus 91 ~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~-ii~~l~~~i~~v~~ 169 (174)
++.-.++....+.+...-..|......|.++...++.-...++..+.-++.+.++... |.+|+ ++++++++|+.|+|
T Consensus 170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH
Confidence 3444466666777777888999999999999999999999999999999998776555 55544 45555556666666
Q ss_pred HHhc
Q 030656 170 FKLA 173 (174)
Q Consensus 170 ~k~~ 173 (174)
.|+|
T Consensus 248 iri~ 251 (251)
T PF09753_consen 248 IRIF 251 (251)
T ss_pred heeC
Confidence 6664
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.0077 Score=49.36 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=63.8
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 030656 84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT---AMSRRMSRNKWIIGTVVAVL 160 (174)
Q Consensus 84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~---~i~rr~~~dk~il~~ii~~l 160 (174)
..=.+.+.+-.+.+.|..++=.....--..|-|++.++..++......+..+..-++ ...++..+.|||.+++++++
T Consensus 202 q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii 281 (297)
T KOG0810|consen 202 QERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIII 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHH
Confidence 333455666777788888888888888889999999999999999999999998887 77777777777666555544
Q ss_pred HHHHHHH
Q 030656 161 VIAIILI 167 (174)
Q Consensus 161 ~~~i~~v 167 (174)
+++++++
T Consensus 282 ~~v~v~~ 288 (297)
T KOG0810|consen 282 IVVLVVV 288 (297)
T ss_pred HHHHhhh
Confidence 4444333
No 12
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0023 Score=51.80 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=56.0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
..+..+-.++.+++.|++..|..|+..|..|+|+|.+|...++++..++..+.+.|..+..
T Consensus 75 ~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 75 QESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4456777788889999999999999999999999999999999999999999999998864
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.039 Score=43.48 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK----KVLTAMSRRMSRNKWIIGTVVAVLVI 162 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~----~ll~~i~rr~~~dk~il~~ii~~l~~ 162 (174)
...|....+++.|.-+.=+.+-+....|.|....+...+.+...+++.+. +-++. .|..+.+||+-|+|+++.++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~ 262 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHH
Confidence 34566777888999999888888999999999999999999988888776 44555 77888888888877776666
Q ss_pred HHHHHHH
Q 030656 163 AIILILY 169 (174)
Q Consensus 163 ~i~~v~~ 169 (174)
+|++|+|
T Consensus 263 viv~vv~ 269 (280)
T COG5074 263 VIVVVVF 269 (280)
T ss_pred HHHHHHh
Confidence 6655553
No 14
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.22 E-value=0.0035 Score=38.94 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=54.0
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656 82 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 141 (174)
Q Consensus 82 ~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~ 141 (174)
.+.+....|......+.++.++|..+...+..|.+.|.++..++..+...+..+.+-++.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 455667788999999999999999999999999999999999999999999999876653
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.02 Score=40.22 Aligned_cols=83 Identities=16% Similarity=0.358 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM----SRNKWIIGTVVAVLVI 162 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~----~~dk~il~~ii~~l~~ 162 (174)
+..+.+++..++|+.+|..+-.+....--++|....++.+........=++.-..+.|++ ++-++|+++|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888899999998888888888999888888887777766555555555554 4555566665555555
Q ss_pred HHHHHHH
Q 030656 163 AIILILY 169 (174)
Q Consensus 163 ~i~~v~~ 169 (174)
+|++.+|
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 5544443
No 16
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.029 Score=45.57 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=85.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHhhHHhhcC----CCC-Cccc--ccHHHHHHHh--hh-
Q 030656 15 LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLN-----AAARDELLES----GMA-DALT--ASADQRSRLM--MS- 79 (174)
Q Consensus 15 ~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-----~~~R~~Ll~~----~~~-~~~~--~~~~~r~~ll--~~- 79 (174)
.||+++.-..+-...+-..|..+..+|+...+.+-. +.+-.+.+.+ .+. |+.+ ....++++++ .+
T Consensus 130 ~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~ 209 (305)
T KOG0809|consen 130 LSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENN 209 (305)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcc
Confidence 356666666677788888999999999887766421 1111122211 110 0111 1112233332 12
Q ss_pred hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030656 80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK 150 (174)
Q Consensus 80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk 150 (174)
.....+-..-+......+.|..++-.+.-.-..+|--.+.++.-++.++...+..|.+-+....+-...++
T Consensus 210 ~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~ 280 (305)
T KOG0809|consen 210 EEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNK 280 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCC
Confidence 22222223334555556677777777777777899999999999999999999999999999988777775
No 17
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.09 E-value=0.092 Score=41.05 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 97 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 97 ~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+--...-+.+.-..|....+++..+-..+++-...|+..+.=+.........+++-+..+|++|+.+|..|++.+||+
T Consensus 164 ArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 164 ARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445556666788999999999999999999999999999999999988888888888889999999999999885
No 18
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.027 Score=45.29 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA-MSRRMSRNKWIIGTVVAVLVIAII 165 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~-i~rr~~~dk~il~~ii~~l~~~i~ 165 (174)
.+.+.+..+-+.|..++=.+.-.-...|-+...++..++..+..++..|++-+.. +.-+..+.||-+|+.+++++++++
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lf 273 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLF 273 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHH
Confidence 3456666667777777777777777899999999999999999999999976655 455578889999998888888887
Q ss_pred HHHHHHhc
Q 030656 166 LILYFKLA 173 (174)
Q Consensus 166 ~v~~~k~~ 173 (174)
+.+..|.+
T Consensus 274 v~l~~kl~ 281 (283)
T COG5325 274 VSLIKKLR 281 (283)
T ss_pred HHHHHHhc
Confidence 77766654
No 19
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.16 Score=41.13 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=68.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 030656 83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR---MSRNKWIIGTVVAV 159 (174)
Q Consensus 83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr---~~~dk~il~~ii~~ 159 (174)
++.-.+.+.+.++-+.|.++|=.+...=.+.|-+.+.++..++..+..++..++.-|+.=.+- ...-+|++.+|+++
T Consensus 175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~ 254 (269)
T KOG0811|consen 175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence 344456777778888888888888888889999999999999999999999999887764433 33334666666666
Q ss_pred HHHHHHHHHHHHh
Q 030656 160 LVIAIILILYFKL 172 (174)
Q Consensus 160 l~~~i~~v~~~k~ 172 (174)
+++++++++|+.+
T Consensus 255 v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 255 VGLIIGLIIAGIA 267 (269)
T ss_pred HHHHHHHHHHHhh
Confidence 6677777777643
No 20
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.044 Score=44.87 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=79.4
Q ss_pred HHHHHhhhhHHhhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHH
Q 030656 72 QRSRLMMSTERVNQ----STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMS 147 (174)
Q Consensus 72 ~r~~ll~~~~~l~~----~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~ 147 (174)
+-+.+-.++.++.. ..+-.....+-+.|...+-.-..+.+..|-..|..+.+...++..++..+|.-|+...+...
T Consensus 212 ~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~ 291 (316)
T KOG3894|consen 212 QVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNG 291 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcc
Confidence 33334444444433 34455566678888888888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
..+..+.+.++||.+++.|+-||
T Consensus 292 ~~r~~~lf~llvlsf~lLFldwy 314 (316)
T KOG3894|consen 292 GLRVFLLFFLLVLSFSLLFLDWY 314 (316)
T ss_pred cchhHHHHHHHHHHHHHHHHhhc
Confidence 88877777788888888888876
No 21
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0089 Score=41.90 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIA 163 (174)
Q Consensus 96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~ 163 (174)
-+--.....-.+..+...|...|.+..+..+.+.+-|+.+=.-++.|.|+ -.-++..|.++++++++
T Consensus 44 kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 44 KVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 33344567777778889999999999999999999999999999999999 33344444444444333
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.059 Score=41.86 Aligned_cols=90 Identities=16% Similarity=0.298 Sum_probs=54.1
Q ss_pred HhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HhcHhhhhhhHHHHHHHHHHHHHH---------
Q 030656 76 LMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHA-HNTLHGVDDNVSKSKKVLTAMSRR--------- 145 (174)
Q Consensus 76 ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~-~~~~~~i~~~l~~s~~ll~~i~rr--------- 145 (174)
..+...+|-+++.+|.+|-+.+.+.--++.+| |+|..- -..++.=...|.+|...++...-.
T Consensus 116 ~~dQR~rLl~nTerLeRst~rl~ds~Ria~ET--------EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 116 SADQRARLLQNTERLERSTDRLKDSQRIALET--------EQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILT 187 (220)
T ss_pred chhHHHHHHhhhHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 34556778888888888888888888888874 444332 244555555555555555443322
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Q 030656 146 MSRNKWII--GTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 146 ~~~dk~il--~~ii~~l~~~i~~v~~~k~~ 173 (174)
-++.+++. |++-+++++.++++++.-|+
T Consensus 188 tM~RR~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 188 TMTRRLIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334443 55666666666666665554
No 23
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=96.42 E-value=0.077 Score=32.85 Aligned_cols=59 Identities=14% Similarity=0.251 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
..|+.....+.+..+++.++-..+..|.+.|.++..++..+...+..++.-+....+..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777788889999999999999999999999999999999999999999888877653
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.06 E-value=0.35 Score=37.64 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
.+..+.......+|..+.+.| ...+......+...+.-+....+....+.|+-+++++++.+++++|+
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 333334444455566666666 44555566667777777777777777776666666666666666664
No 25
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=95.48 E-value=0.17 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~ 140 (174)
...|......+.+..+++..+-..+..|.+.|.++...+..+...+..+.+-+.
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888999999999999999999999999999999999999887664
No 26
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=93.86 E-value=0.99 Score=28.78 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=39.7
Q ss_pred HHHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 117 SLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
....+..++++++..+.-.+ .+-.++.++.=+|==|+|++++=+++++++++..++|
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~~ 70 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSMF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556667777777776666 4567888888899999998776666666666555543
No 27
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=1.9 Score=30.47 Aligned_cols=48 Identities=10% Similarity=0.175 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
-+..|.++-.++-.=+..-=+++-.-..++.++++..+.-..--..+.
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~ 77 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFE 77 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333334444444443333333333333
No 28
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=93.36 E-value=1.3 Score=28.80 Aligned_cols=56 Identities=14% Similarity=0.352 Sum_probs=39.5
Q ss_pred HHHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 117 SLLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
-...+.+++++++..+.-++ .+-.++.++.=+|==|+|++++=++++++++.+..+
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~ 72 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPI 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777 455778888888988998866665555555555544
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=93.36 E-value=1.5 Score=29.03 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 107 ILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 107 ~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
-+++|..+.+.|...-.... ..|.++=+.|--+.++-.++++++++++++++++++
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 35666666666665555444 356666677888888999998888888887777764
No 30
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=92.56 E-value=0.47 Score=29.43 Aligned_cols=33 Identities=12% Similarity=0.345 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~ 169 (174)
.....-.+|+.+-++|++++++++++++++..|
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~ 58 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTF 58 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566677777877777665555544433
No 31
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=92.46 E-value=1.8 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.310 Sum_probs=37.4
Q ss_pred HHHHHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 118 LLHAHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 118 L~~~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
...+.+++++++..+.-.+ .+-.+..++.=+|==|+|++++=+++++++.+.+.+
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~ 69 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777666 456778888888888998866655555555555544
No 32
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=91.99 E-value=2 Score=27.39 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHhcHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 121 AHNTLHGVDDNVSKSK-KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 121 ~~~~~~~i~~~l~~s~-~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
++.+++++...+.-.+ .+-.++.++.=+|-=|+|++++=++++.++++..+.
T Consensus 20 ~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 20 IHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444 345678888889988998855444444444444343
No 33
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=89.80 E-value=9.7 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 150 KWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
.+.-++++++++++=++.+++|++
T Consensus 262 ~~~~~~i~llfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 262 LLASLFIFLLFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344466777777777788888875
No 34
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=1.6 Score=33.77 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIIL 166 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~ 166 (174)
-+.|...+..+.|..++..+-.+...+--|.|+=--++...+.++-..=++.-+.+.|.++-.-+=+.++++++++++++
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy 203 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY 203 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence 45677888899999999999888888888888877788888888877777777888888777655555555555555555
Q ss_pred HHHH
Q 030656 167 ILYF 170 (174)
Q Consensus 167 v~~~ 170 (174)
|++.
T Consensus 204 iiv~ 207 (217)
T KOG0859|consen 204 IIVA 207 (217)
T ss_pred HHHH
Confidence 5554
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=88.54 E-value=2.1 Score=26.55 Aligned_cols=33 Identities=6% Similarity=0.218 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 141 AMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
...++..+.+-..++.++++++++++++|..||
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666677778899999998889999988875
No 36
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=87.49 E-value=0.87 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 138 VLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 138 ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
..+.+-+|..+||.-+++.+++++++++.++
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~ 34 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAIF 34 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 4567888999999988887777655554443
No 37
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=86.94 E-value=5.4 Score=24.71 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=48.4
Q ss_pred HHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH
Q 030656 75 RLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK 136 (174)
Q Consensus 75 ~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~ 136 (174)
+++++++.+.++...++++..++.+|..-=..=.+.|..=+..+..+...+......+....
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56677777888888888888888888766666677888888888888888888887776654
No 38
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=14 Score=29.15 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=36.5
Q ss_pred hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHH
Q 030656 80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSK 136 (174)
Q Consensus 80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~ 136 (174)
+..+++....+++....|.+|-+.-..=...|.+=..++.++-.+..-|.+-+...+
T Consensus 148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 344555666666666666666666555566666666677777777776666666554
No 39
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.41 E-value=5.6 Score=32.35 Aligned_cols=59 Identities=12% Similarity=0.226 Sum_probs=52.4
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
++....|++...++.....+|.++-.+|..|.+.|.++..+++..+..+..+++=++.+
T Consensus 214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 34566788888899999999999999999999999999999999999999998876653
No 40
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=85.08 E-value=18 Score=28.85 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 030656 116 QSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN--KWIIGTVVAVLV 161 (174)
Q Consensus 116 e~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d--k~il~~ii~~l~ 161 (174)
..|+.-..-+..+...++..-.-++.-+.|.-.. +..-|++.++++
T Consensus 188 ~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~ 235 (251)
T PF09753_consen 188 QILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIF 235 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3444445556666666666666666666664333 444454554443
No 41
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=84.74 E-value=0.5 Score=32.54 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k 171 (174)
..+-++++++.++|++++++++||.
T Consensus 60 ~~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEE
Confidence 3455666777777777777777764
No 42
>PHA03240 envelope glycoprotein M; Provisional
Probab=84.49 E-value=1.1 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030656 152 IIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~ 172 (174)
..|++|++++++|++++|+||
T Consensus 213 ~~WIiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKI 233 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666667665
No 43
>PHA02650 hypothetical protein; Provisional
Probab=84.42 E-value=2.1 Score=28.04 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 151 WIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+++.++++++++++++++|+|..+
T Consensus 51 ~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 51 NFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334446666667777888888653
No 44
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.28 E-value=19 Score=28.49 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcHhh
Q 030656 99 ETEELGVSILQDLSSQRQSLLHAHNTLHG 127 (174)
Q Consensus 99 ete~~g~~~l~~L~~Qre~L~~~~~~~~~ 127 (174)
+|+++...+..++..+|+-+++...++.+
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888777777666554
No 45
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=83.95 E-value=0.61 Score=40.95 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=11.1
Q ss_pred HHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH
Q 030656 119 LHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN 149 (174)
Q Consensus 119 ~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d 149 (174)
.++...+.+..+-+++|++++..++......
T Consensus 441 ~~vn~sL~~A~~~L~~Sn~iL~~v~~~~~~~ 471 (490)
T PF00523_consen 441 GQVNNSLNNAKDLLDKSNQILDSVNPGISSN 471 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 3344444444444444444444444433333
No 46
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=82.32 E-value=19 Score=27.11 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHHhcHhhhhhhHHHH
Q 030656 97 MLETEELGVSILQDLSSQR----QSLLHAHNTLHGVDDNVSKS 135 (174)
Q Consensus 97 ~~ete~~g~~~l~~L~~Qr----e~L~~~~~~~~~i~~~l~~s 135 (174)
-+|...+-.++..++...+ +-......++.+++..++.-
T Consensus 97 ~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 97 REEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444444322 33344444555555444433
No 47
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=81.85 E-value=1.6 Score=33.48 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=12.2
Q ss_pred HHHHHHHH-HHHHH-HHHHHHHHHHHhcC
Q 030656 148 RNKWIIGT-VVAVL-VIAIILILYFKLAK 174 (174)
Q Consensus 148 ~dk~il~~-ii~~l-~~~i~~v~~~k~~~ 174 (174)
.|-.-|++ ||++| +++|+|++ |||+|
T Consensus 158 FD~~SFiGGIVL~LGv~aI~ff~-~KF~k 185 (186)
T PF05283_consen 158 FDAASFIGGIVLTLGVLAIIFFL-YKFCK 185 (186)
T ss_pred CchhhhhhHHHHHHHHHHHHHHH-hhhcc
Confidence 44433333 33333 44444444 48876
No 48
>PF12669 P12: Virus attachment protein p12 family
Probab=81.70 E-value=1 Score=27.82 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.6
Q ss_pred HHHHHHhc
Q 030656 166 LILYFKLA 173 (174)
Q Consensus 166 ~v~~~k~~ 173 (174)
+++|++++
T Consensus 14 ~v~~r~~~ 21 (58)
T PF12669_consen 14 YVAIRKFI 21 (58)
T ss_pred HHHHHHHH
Confidence 33444554
No 49
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.03 E-value=25 Score=27.60 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWI 152 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~i 152 (174)
..+..-...+.++..+....++++..-.+.|..-...-......-..-.+..+.|+++..-+++-
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 55556666777788888888888887777777666666666555556667777788877777665
No 50
>PHA02819 hypothetical protein; Provisional
Probab=80.79 E-value=3.6 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 151 WIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+++.++++++++++++.+|+|..|
T Consensus 48 ~~ii~l~~~~~~~~~~flYLK~~~ 71 (71)
T PHA02819 48 YLIIGLVTIVFVIIFIIFYLKVIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333445555666777778888654
No 51
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=80.76 E-value=2.2 Score=24.28 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 030656 153 IGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~k~~ 173 (174)
++++.++.+.++..++|.||.
T Consensus 14 F~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666777888873
No 52
>PHA03164 hypothetical protein; Provisional
Probab=80.57 E-value=2.4 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.483 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 144 RRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 144 rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
||...--+++.+.++-++++|+||+|.
T Consensus 54 rRktftFlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 54 RRKTFTFLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred hhheeehHHHHHHHHHHHHHHHHHHHh
Confidence 344455566766666677777777774
No 53
>PHA02844 putative transmembrane protein; Provisional
Probab=80.23 E-value=3.2 Score=26.81 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 030656 154 GTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~~~ 174 (174)
.++++++++++++.+|+|..+
T Consensus 53 i~i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 53 LTIIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHheec
Confidence 445555566667777887653
No 54
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.95 E-value=21 Score=29.83 Aligned_cols=94 Identities=11% Similarity=0.233 Sum_probs=57.7
Q ss_pred hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH-------HHH
Q 030656 80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN-------KWI 152 (174)
Q Consensus 80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d-------k~i 152 (174)
.+.+......|...+..+.+.+.-=...-.++..--.........+..+...+.+|.+++...+.-..+= +--
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQ 306 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 3444555555666665555555544444444444444455666777888899999999998887643221 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 030656 153 IGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~k~~ 173 (174)
+..+++=++++-+||.|+..|
T Consensus 307 ~~~l~GD~llaaa~isY~G~f 327 (344)
T PF12777_consen 307 LKNLVGDSLLAAAFISYLGPF 327 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT
T ss_pred hcccHHHHHHHHHHHHHcCCC
Confidence 344677777777777776544
No 55
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=79.53 E-value=7.3 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 143 SRRMSRNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 143 ~rr~~~dk~il~~ii~~l~~~i~~v~~ 169 (174)
.|+..++-++=+..|++|++.|.+++.
T Consensus 24 ar~~lq~lfvnf~lilicllli~iivm 50 (52)
T TIGR01294 24 ARQNLQNLFINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777766666543
No 56
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=78.33 E-value=27 Score=26.42 Aligned_cols=49 Identities=10% Similarity=0.265 Sum_probs=27.4
Q ss_pred cHhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 030656 124 TLHGVDDNVSKSKKVLTAMSRRMSRN-KWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 124 ~~~~i~~~l~~s~~ll~~i~rr~~~d-k~il~~ii~~l~~~i~~v~~~k~ 172 (174)
.+..+..++..-...-..|..+.... +.++|++++++++-.+++.|+-|
T Consensus 65 ~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf 114 (180)
T PF04678_consen 65 RLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTF 114 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444333 56677777777766666666554
No 57
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=77.95 E-value=3.3 Score=27.57 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
.-||.|+.+.++.+.++++++.|.+.
T Consensus 34 kPNk~iM~~Gl~a~~~c~gYi~Ym~~ 59 (86)
T PF14937_consen 34 KPNKPIMAFGLIAITLCVGYIAYMHA 59 (86)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999998764
No 58
>PHA02975 hypothetical protein; Provisional
Probab=77.94 E-value=5.1 Score=25.48 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030656 151 WIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
+++.+++++++++++..+|+|..
T Consensus 46 ~~ii~i~~v~~~~~~~flYLK~~ 68 (69)
T PHA02975 46 ILIIFIIFITCIAVFTFLYLKLM 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444666666677777888864
No 59
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=76.87 E-value=16 Score=23.16 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
.+-..+..=....||+...+++.++.+++.++
T Consensus 38 ~~~~~l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 38 NLNKQLEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445668888888777766655544
No 60
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=76.53 E-value=8.4 Score=22.43 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 143 SRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 143 ~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
.|+.+++-++=+..|++|++.|.+++
T Consensus 24 a~qnlqelfvnfclilicllli~iiv 49 (52)
T PF04272_consen 24 ARQNLQELFVNFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666665554
No 61
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=75.19 E-value=4.9 Score=25.89 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030656 151 WIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~ 172 (174)
+++.++++++++++++.+|.|.
T Consensus 50 ~~ii~ii~v~ii~~l~flYLK~ 71 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLYLKL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555556667664
No 62
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=74.49 E-value=10 Score=22.27 Aligned_cols=20 Identities=5% Similarity=0.283 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~ 170 (174)
+.+.+.+++|+.+..++.|+
T Consensus 9 L~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 9 LLLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444443
No 63
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=73.66 E-value=18 Score=24.07 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=27.1
Q ss_pred HHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 5 IRKMDLEARS--LQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 5 i~qme~E~~~--~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
++.++.-.+. +||..|..+.......++.+..+.++++.++..
T Consensus 21 le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 21 LEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3444444443 566667777777777777777777777666643
No 64
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=72.54 E-value=6 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~ 170 (174)
||.+|+++.+++|++-+|.
T Consensus 6 iLi~ICVaii~lIlY~iYn 24 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 65
>PHA02692 hypothetical protein; Provisional
Probab=71.57 E-value=7.5 Score=24.84 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030656 152 IIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~ 172 (174)
|+.+++++.++++++.+|+|.
T Consensus 49 ii~~~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 49 FLIGLIAAAIGVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333355555666667777774
No 66
>PHA03054 IMV membrane protein; Provisional
Probab=69.13 E-value=9.7 Score=24.37 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030656 154 GTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~ 172 (174)
.++++++++++++.+|+|.
T Consensus 53 i~l~~v~~~~l~~flYLK~ 71 (72)
T PHA03054 53 IIFFIVLILLLLIYLYLKV 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3345555556666677764
No 67
>PF15106 TMEM156: TMEM156 protein family
Probab=68.75 E-value=7.1 Score=30.47 Aligned_cols=27 Identities=19% Similarity=0.328 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
+.=|+..|+.|++++++.++++.+|++
T Consensus 172 CsmKITWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 172 CSMKITWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666666555555555555556775
No 68
>PHA02902 putative IMV membrane protein; Provisional
Probab=68.67 E-value=11 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
.|.+++.+++++.++.+++..|.+.
T Consensus 3 ~dtfvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 3 IDTFVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666767654
No 69
>PRK14762 membrane protein; Provisional
Probab=68.28 E-value=6.7 Score=19.86 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAI 164 (174)
Q Consensus 150 k~il~~ii~~l~~~i 164 (174)
|+++|++.+++++.+
T Consensus 2 ki~lw~i~iifligl 16 (27)
T PRK14762 2 KIILWAVLIIFLIGL 16 (27)
T ss_pred eeHHHHHHHHHHHHH
Confidence 456666554444433
No 70
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=67.82 E-value=8.5 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030656 154 GTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~ 172 (174)
.+.+++|++++++++|--+
T Consensus 5 ~iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999999988644
No 71
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=66.67 E-value=16 Score=19.86 Aligned_cols=20 Identities=0% Similarity=0.235 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030656 153 IGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~k~ 172 (174)
..++..+.++++++.+|+-|
T Consensus 11 vv~iLt~~ILvFWfgvf~~f 30 (34)
T PF08113_consen 11 VVMILTAFILVFWFGVFALF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhh
Confidence 34444444455555555443
No 72
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=66.64 E-value=14 Score=22.23 Aligned_cols=24 Identities=13% Similarity=0.348 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 151 WIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+-+.-.|++..+.|+.++|.|++|
T Consensus 33 frllrgif~itlviwt~vwlkllr 56 (60)
T PF08196_consen 33 FRLLRGIFLITLVIWTVVWLKLLR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666677889999999875
No 73
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=66.23 E-value=9.3 Score=25.24 Aligned_cols=20 Identities=10% Similarity=0.441 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k 171 (174)
|+.++.+++++++.+|+|..
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555543
No 74
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=65.69 E-value=42 Score=23.16 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=27.9
Q ss_pred HHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 109 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 109 ~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
+....|-|+|..-..........|......|..|+.|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777788888887774
No 75
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.86 E-value=23 Score=28.78 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=31.4
Q ss_pred HHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 117 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
.+.++...+..-..+|.+|.+.=+...+..+-=.+|++++++++.++++++
T Consensus 216 nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 216 NVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPVGLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666666665555555555443
No 76
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=64.84 E-value=10 Score=27.08 Aligned_cols=9 Identities=44% Similarity=0.678 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 030656 161 VIAIILILY 169 (174)
Q Consensus 161 ~~~i~~v~~ 169 (174)
+++|+++.|
T Consensus 78 Ig~Illi~y 86 (122)
T PF01102_consen 78 IGIILLISY 86 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333433333
No 77
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=64.67 E-value=24 Score=19.97 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 141 AMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
+|+||..-|.+....+-+....++.-+
T Consensus 5 dm~RR~lmN~ll~Gava~~a~~~lyP~ 31 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAVAVPAGGMLYPY 31 (39)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhHHHHHHHHhhhh
Confidence 699999999977766665554444433
No 78
>PF15018 InaF-motif: TRP-interacting helix
Probab=63.86 E-value=13 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 030656 156 VVAVLVIAIILILYFKLA 173 (174)
Q Consensus 156 ii~~l~~~i~~v~~~k~~ 173 (174)
++.+.+.++.+.+||-|+
T Consensus 14 l~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 14 LFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 555666788888888775
No 79
>PRK10132 hypothetical protein; Provisional
Probab=63.61 E-value=47 Score=23.09 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 117 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~ 169 (174)
.|..++.++.+.......++.....-..-+..+-|--++|.+.+.++++++++
T Consensus 53 ~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 53 LLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444333344444433333444555555555555555555443
No 80
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=62.16 E-value=26 Score=23.37 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=8.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Q 030656 143 SRRMSRN-KWIIGTVVAVLVIAI 164 (174)
Q Consensus 143 ~rr~~~d-k~il~~ii~~l~~~i 164 (174)
.+..... +++++++++++++++
T Consensus 6 ~~~~~~~~~l~i~l~~~v~~~a~ 28 (97)
T PF04999_consen 6 IRDIKRQKKLIILLVIVVLISAL 28 (97)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344444 344444444444333
No 81
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=60.25 E-value=25 Score=26.15 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 5 i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
+-++..+.-.+....+..+..++..|+.+.++++.+-+.+..
T Consensus 53 l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~~ 94 (157)
T PF14235_consen 53 LAELAADLLELELAARAAYQKKIARYKKEKARYKSEAEELEA 94 (157)
T ss_pred HHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333323788999999999999988887655543
No 82
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=59.74 E-value=40 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 138 VLTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 138 ll~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
.-..+.+|..+.-+.+.+-+.+++++.+++
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~ 38 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVY 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888887777777666
No 83
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.63 E-value=94 Score=25.23 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCC
Q 030656 20 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESG 61 (174)
Q Consensus 20 r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~ 61 (174)
......++.+.+.+++.++.++..++..+ .+|.++|+.+
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~r 106 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45666777777777777777777777665 6888888653
No 84
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=59.54 E-value=22 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 137 KVLTAMSRRMSRNKW 151 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~ 151 (174)
++++...+|..-.-+
T Consensus 3 ~i~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 3 KILKKAKRKSRLRTV 17 (96)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555555444433
No 85
>PHA03049 IMV membrane protein; Provisional
Probab=59.47 E-value=15 Score=23.24 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 030656 157 VAVLVIAIILILY 169 (174)
Q Consensus 157 i~~l~~~i~~v~~ 169 (174)
+++|++++++++|
T Consensus 8 ~iICVaIi~lIvY 20 (68)
T PHA03049 8 VIICVVIIGLIVY 20 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 86
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=59.30 E-value=19 Score=20.20 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILY 169 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~ 169 (174)
.++++.++++++.++|
T Consensus 10 v~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444444
No 87
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=58.86 E-value=26 Score=23.41 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 141 AMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
.+.||......+-..++.+++++++++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIISALVIFI 29 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344554444444454555544444444
No 88
>PHA03049 IMV membrane protein; Provisional
Probab=58.86 E-value=16 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k 171 (174)
+++.+|+++++++|++-+|-|
T Consensus 5 ~~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567777777788888888865
No 89
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=58.20 E-value=16 Score=24.28 Aligned_cols=13 Identities=62% Similarity=0.968 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 030656 158 AVLVIAIILILYF 170 (174)
Q Consensus 158 ~~l~~~i~~v~~~ 170 (174)
++++++|++|+++
T Consensus 32 ivLVIIiLlImlf 44 (85)
T PF10717_consen 32 IVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 90
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=57.57 E-value=97 Score=24.70 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=14.7
Q ss_pred HhhhhHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 030656 76 LMMSTERVNQSTDRIKDSRRTMLETEELGVSI 107 (174)
Q Consensus 76 ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~ 107 (174)
+-+-...+..-...|++|.....+++.+-...
T Consensus 187 L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n 218 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLNEAQNKTREAEDLNRAN 218 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555444444444333
No 91
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=57.47 E-value=13 Score=24.42 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 030656 150 KWIIGTVVAVL 160 (174)
Q Consensus 150 k~il~~ii~~l 160 (174)
|+++.++++++
T Consensus 5 kii~iii~li~ 15 (85)
T PF11337_consen 5 KIILIIIILIV 15 (85)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 92
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=56.53 E-value=26 Score=19.32 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 145 RMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 145 r~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
+-..+|+.+.++++.+++.++-+++.
T Consensus 6 KS~fekiT~v~v~lM~i~tvg~v~~~ 31 (35)
T PF13253_consen 6 KSTFEKITMVVVWLMLILTVGSVVAS 31 (35)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888887777777776653
No 93
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=56.48 E-value=26 Score=17.78 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 22 VLLAKLREYKSDLNNLKSEVKR 43 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~ 43 (174)
.|..++..|..+|..+++....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 4778888888888888876643
No 94
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=56.41 E-value=50 Score=21.42 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 030656 3 WQIRKMDLEARSLQP-NVKAVLLAKLREYKSDLNNLKSEV 41 (174)
Q Consensus 3 ~~i~qme~E~~~~~~-~~r~~~~~~~~~~~~~l~~l~~~~ 41 (174)
+.|+.|---++..|. +.+..|..++.+|.+..+.|+...
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467778888888876 557888999999999999988765
No 95
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=56.20 E-value=51 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCChhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 5 IRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVKRL 44 (174)
Q Consensus 5 i~qme~E~~~~~~~~-r~~~~~~~~~~~~~l~~l~~~~~~~ 44 (174)
+..+|.++..+|... =..+.-.+.+.+.+++.+...++.+
T Consensus 51 l~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 51 LQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666777776532 4455666666666666666666544
No 96
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=56.13 E-value=15 Score=25.35 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k 171 (174)
..++|+.+.++++++.++++||
T Consensus 60 e~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 60 ELPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3566666666666666666654
No 97
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=55.75 E-value=1.8e+02 Score=27.34 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=46.5
Q ss_pred HhhchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhh-hhh----HHHHHHHHH---HHHHHHHHHHHH
Q 030656 82 RVNQSTDRIKDSRR-TMLETEELGVSILQDLSSQRQSLLHAHNTLHGV-DDN----VSKSKKVLT---AMSRRMSRNKWI 152 (174)
Q Consensus 82 ~l~~~~~~L~~s~r-~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i-~~~----l~~s~~ll~---~i~rr~~~dk~i 152 (174)
...++...+++.-. +..+|.++-..+...|...++.+...-+.+... ++. +..+.+.++ ....+.-..+|+
T Consensus 336 ~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~ 415 (806)
T PF05478_consen 336 IVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWI 415 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 34555555555433 445666666777777777777777665555443 111 111112222 222344456777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 153 IGTVVAVLVIAIILILYF 170 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~ 170 (174)
.+.++.+++++|++++++
T Consensus 416 ~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 416 VGLILCCVLLLIVLCLLL 433 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766666655555555544
No 98
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=55.13 E-value=30 Score=18.10 Aligned_cols=8 Identities=25% Similarity=0.339 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 030656 153 IGTVVAVL 160 (174)
Q Consensus 153 l~~ii~~l 160 (174)
++++++++
T Consensus 6 i~g~llv~ 13 (29)
T PRK14750 6 VCGALLVL 13 (29)
T ss_pred HHHHHHHH
Confidence 33444443
No 99
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=53.70 E-value=17 Score=26.67 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 030656 161 VIAIILILYF 170 (174)
Q Consensus 161 ~~~i~~v~~~ 170 (174)
+++|++++|.
T Consensus 129 ll~i~~giy~ 138 (145)
T PF10661_consen 129 LLAICGGIYV 138 (145)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=53.50 E-value=20 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILI 167 (174)
Q Consensus 154 ~~ii~~l~~~i~~v 167 (174)
++|++++..+|++|
T Consensus 68 ~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 68 GIIFGVMAGVIGII 81 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHH
Confidence 33333333333333
No 101
>PF15202 Adipogenin: Adipogenin
Probab=53.45 E-value=26 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 150 KWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
-+++++..-+-++.+.+|+|++|+
T Consensus 16 flvfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 16 FLVFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677788888874
No 102
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.01 E-value=1.1e+02 Score=23.85 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=50.9
Q ss_pred HHHHHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 030656 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKW 151 (174)
Q Consensus 72 ~r~~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~ 151 (174)
.+.++-.-...+.+....|.+.....++...--.+.+.+...+-..|..-+..+..-...+..-...+..-......+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344332333333334444443333322222233333344444444455555544444444444555666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~ 170 (174)
.-||+.+-.++++++++-.
T Consensus 171 ~~wf~~Gg~v~~~GlllGl 189 (206)
T PRK10884 171 MQWFMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHchHHHHHHHHHHH
Confidence 7788888888888877543
No 103
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=52.76 E-value=16 Score=30.23 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 030656 24 LAKLREYKSDLN 35 (174)
Q Consensus 24 ~~~~~~~~~~l~ 35 (174)
.+|+.+|.+.+.
T Consensus 49 sQRF~EYdErm~ 60 (299)
T PF02009_consen 49 SQRFEEYDERMQ 60 (299)
T ss_pred HHHHHHHHhhhh
Confidence 345555554443
No 104
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=52.68 E-value=9.3 Score=28.76 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=11.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 030656 8 MDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEV 41 (174)
Q Consensus 8 me~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~ 41 (174)
||.|+ .+|..|..+++++++|+.+|+.++
T Consensus 19 LE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 19 LESEL-----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHH-----HHHHHHHHCH--------------
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 678999999999999999999999
No 105
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.49 E-value=98 Score=24.09 Aligned_cols=23 Identities=30% Similarity=0.636 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030656 151 WIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|-++.+++++++.++=|+..|+|
T Consensus 178 ~Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 178 WSLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555554
No 106
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=51.10 E-value=35 Score=18.92 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~ 170 (174)
..|+.++++++++.|-.|+
T Consensus 17 LY~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3456666666666666553
No 107
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=50.27 E-value=51 Score=19.31 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCC
Q 030656 22 VLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESG 61 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~ 61 (174)
.+++++......+..|...|.+++ +.+||.++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yK--------Ka~lFp~G 34 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYK--------KAELFPNG 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCCc
Confidence 567777777778888888776654 56889765
No 108
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=50.23 E-value=43 Score=20.98 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLN 35 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~ 35 (174)
+..+.+--+.+++++++|..|..+.+..+..+.
T Consensus 34 e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~ 66 (73)
T PF09011_consen 34 EVMKEISERWKSLSEEEKEPYEERAKEDKERYE 66 (73)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 455667778888999999999988887655443
No 109
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=50.07 E-value=3.9 Score=27.86 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 030656 158 AVLVIAIILILYFKLA 173 (174)
Q Consensus 158 ~~l~~~i~~v~~~k~~ 173 (174)
+++.+++.|++|+.++
T Consensus 77 ~~v~~lv~~l~w~f~~ 92 (96)
T PTZ00382 77 AVVGGLVGFLCWWFVC 92 (96)
T ss_pred hHHHHHHHHHhheeEE
Confidence 3333444455554443
No 110
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.94 E-value=68 Score=25.04 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 030656 106 SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKW 151 (174)
Q Consensus 106 ~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~ 151 (174)
.++.++..||+.|.+++-+. ++-..++.+-.-|+.+.+.+=.||+
T Consensus 82 G~l~tie~Qr~alEnA~~n~-Evl~~m~~~A~AmK~~h~~mDiDkV 126 (221)
T KOG1656|consen 82 GTLSTIEFQREALENANTNT-EVLDAMGSAAKAMKAAHKNMDIDKV 126 (221)
T ss_pred hHHHHHHHHHHHHHcccccH-HHHHHHHHHHHHHHHHHhccChhHH
Confidence 56777888888888776654 3445566666666666666655554
No 111
>PRK09759 small toxic polypeptide; Provisional
Probab=49.75 E-value=12 Score=22.39 Aligned_cols=20 Identities=5% Similarity=0.250 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~ 168 (174)
.|..++.++++|+.+++|++
T Consensus 3 ~k~~l~~liivCiTvL~f~~ 22 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTW 22 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHH
Confidence 46677777777766666553
No 112
>PTZ00046 rifin; Provisional
Probab=49.61 E-value=19 Score=30.45 Aligned_cols=22 Identities=32% Similarity=0.768 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030656 152 IIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|.+.+|+++++++++|+.|-++
T Consensus 317 IiaSiiAIvVIVLIMvIIYLIL 338 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLIL 338 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333343
No 113
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=49.43 E-value=1.4e+02 Score=24.02 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=11.8
Q ss_pred cHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 030656 124 TLHGVDDNVSKSKKVLTAMSRRMSRNKWII 153 (174)
Q Consensus 124 ~~~~i~~~l~~s~~ll~~i~rr~~~dk~il 153 (174)
.+..-.+.++.|-+-.+.-.++.+.=..|.
T Consensus 228 n~~~g~~h~d~AvksaRaaRkkki~c~gI~ 257 (280)
T COG5074 228 NVEQGVGHTDKAVKSARAARKKKIRCYGIC 257 (280)
T ss_pred hHHHhhhhHHHHHHHHHHHHhcceehhhhH
Confidence 333333333344333444444444433333
No 114
>COG4499 Predicted membrane protein [Function unknown]
Probab=49.42 E-value=22 Score=30.38 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 101 EELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 101 e~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
.+++.=+-+....+.++..+.-..|.-. +-..-||+-.+.|++++++++++.|+-|+
T Consensus 188 d~l~e~i~e~~~kE~e~~~kn~a~VpK~----------------k~~ifk~~giGliillvl~li~~~Y~~f~ 244 (434)
T COG4499 188 DDLAEFIDEEYQKETEKINKNYAFVPKK----------------KYTIFKYFGIGLIILLVLLLIYFTYYYFS 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeecccc----------------cceehhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344333344666666655554444321 33445777777777777777777777665
No 115
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=48.96 E-value=59 Score=19.67 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHH
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLK 38 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~ 38 (174)
++.+.+....+++|+.+|..|.......+..+..-.
T Consensus 30 ~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~ 65 (69)
T PF00505_consen 30 EISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEM 65 (69)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999888777655554433
No 116
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=48.40 E-value=30 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
--|.|+.++++++.+.+++++|.+.
T Consensus 73 ewk~v~~~~~~~i~~s~~l~~~~r~ 97 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLLFIWQRS 97 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888877777777777664
No 117
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=48.22 E-value=1.3e+02 Score=23.57 Aligned_cols=38 Identities=32% Similarity=0.338 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 5 i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
+..+.-|+.++..++=..++...+..++|++.++.+|+
T Consensus 103 f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 103 FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555556666666555554
No 118
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=48.17 E-value=21 Score=30.16 Aligned_cols=18 Identities=22% Similarity=0.702 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILY 169 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~ 169 (174)
+..+|.++++++|.+|+|
T Consensus 313 iaSiIAIvvIVLIMvIIY 330 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIY 330 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 119
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.12 E-value=46 Score=20.65 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=23.2
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 14 SLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 44 (174)
Q Consensus 14 ~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~ 44 (174)
..|+........++..+..++..+...+..+
T Consensus 35 kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 35 KAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888888888888888888888777553
No 120
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=48.05 E-value=88 Score=23.88 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=25.0
Q ss_pred HHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 116 QSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTV 156 (174)
Q Consensus 116 e~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~i 156 (174)
+++.++...+...++++. +.++++.+.++.-..|.-+.++
T Consensus 3 ~~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~~~~ 42 (186)
T COG5052 3 GQLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYFMAG 42 (186)
T ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhHHHH
Confidence 456667777777776664 4567777777765555444333
No 121
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=47.65 E-value=1.4e+02 Score=26.31 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 130 DNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 130 ~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k 171 (174)
..+..+++..+.|..|+...++.-..++++++++++.+++|-
T Consensus 243 ~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yD 284 (469)
T PF10151_consen 243 ESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYD 284 (469)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHh
Confidence 455677888888888877776555444445555555555554
No 122
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.44 E-value=1.9e+02 Score=25.17 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=37.5
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656 87 TDRIKDS--RRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140 (174)
Q Consensus 87 ~~~L~~s--~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~ 140 (174)
..++++| ..++-++-..|.+++.....|--.-.++++-++++...+++...+=.
T Consensus 303 l~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~ 358 (439)
T KOG2911|consen 303 LSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVED 358 (439)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHH
Confidence 3344443 35778888899999998888866666677777777777776655433
No 123
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.34 E-value=1.4e+02 Score=23.38 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
.++-..|..+|..++.+= .+..+.+-++++...+..++.+=..++
T Consensus 104 v~amk~g~kaLK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 104 VDAMKQAAKTLKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555554 345555555555555555554444443
No 124
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.25 E-value=1.4e+02 Score=27.76 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcHhhhhh
Q 030656 102 ELGVSILQDLSSQRQSLLHAHNTLHGVDD 130 (174)
Q Consensus 102 ~~g~~~l~~L~~Qre~L~~~~~~~~~i~~ 130 (174)
.+-..|.+.|..|.+.|.....++..+..
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555443
No 125
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=46.71 E-value=8.7 Score=31.38 Aligned_cols=19 Identities=16% Similarity=0.203 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~ 169 (174)
+|+++.+++++++|++++|
T Consensus 280 iil~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred HHHHHHHHHHHHHhhheee
Confidence 3444444444445555444
No 126
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=46.49 E-value=28 Score=20.13 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~ 168 (174)
+..|+.+++.++++++.+
T Consensus 24 ~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 24 LTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555544444444443
No 127
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=46.37 E-value=23 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030656 156 VVAVLVIAIILILYFKL 172 (174)
Q Consensus 156 ii~~l~~~i~~v~~~k~ 172 (174)
+.+++..++.+.||.+|
T Consensus 31 ~~v~~~t~~~l~iYp~f 47 (97)
T PF04834_consen 31 VLVFCSTFFSLAIYPCF 47 (97)
T ss_pred HHHHHHHHHHHhhhhee
Confidence 33444445666677654
No 128
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=46.25 E-value=1.8e+02 Score=24.45 Aligned_cols=30 Identities=7% Similarity=0.147 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHhcHhhhhhhHHHHHHH
Q 030656 109 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKV 138 (174)
Q Consensus 109 ~~L~~Qre~L~~~~~~~~~i~~~l~~s~~l 138 (174)
+.+..-++.|++.+..+.|++..+|.-|.+
T Consensus 68 ~~i~~L~~~Ik~r~~~l~DmEa~LPkkNGl 97 (330)
T PF07851_consen 68 ELIEKLEEDIKERRCQLFDMEAFLPKKNGL 97 (330)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhCCCCCCc
Confidence 334444556778888888888888776643
No 129
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=45.93 E-value=71 Score=19.76 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 138 VLTAMSRRMSRNKWIIGTVVAVL 160 (174)
Q Consensus 138 ll~~i~rr~~~dk~il~~ii~~l 160 (174)
++..= |+..++..++++.++.+
T Consensus 32 il~ke-r~R~r~~~~~~~li~aL 53 (64)
T COG4068 32 ILNKE-RKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 34433 34344444554444444
No 130
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=45.59 E-value=53 Score=19.10 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=5.0
Q ss_pred HHHHHHHHh
Q 030656 164 IILILYFKL 172 (174)
Q Consensus 164 i~~v~~~k~ 172 (174)
+++.+|-|+
T Consensus 21 iGl~IyQki 29 (49)
T PF11044_consen 21 IGLSIYQKI 29 (49)
T ss_pred HHHHHHHHH
Confidence 555566554
No 131
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=45.54 E-value=51 Score=21.46 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030656 154 GTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~ 172 (174)
.+.|++|++++...+|+.|
T Consensus 55 l~ail~lL~a~Ya~fyl~l 73 (79)
T PF15168_consen 55 LAAILVLLLAFYAFFYLNL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4445555556655666654
No 132
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=45.49 E-value=73 Score=19.73 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 030656 133 SKSKKVLTAMSRRM 146 (174)
Q Consensus 133 ~~s~~ll~~i~rr~ 146 (174)
..|+.-|++|.|+.
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 34566677777765
No 133
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=45.23 E-value=1e+02 Score=21.40 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030656 155 TVVAVLVIAIILILYFKL 172 (174)
Q Consensus 155 ~ii~~l~~~i~~v~~~k~ 172 (174)
+++++++.++.+.+|+++
T Consensus 97 ~~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 97 LVVVLLLPVLALGLYLKL 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 444455556667777654
No 134
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=45.20 E-value=1.5e+02 Score=23.33 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH
Q 030656 117 SLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN 149 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d 149 (174)
-|.+....+++.+-.++.+..++..+.-|...-
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~ 48 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSRLTVY 48 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555555666666666666666666664443
No 135
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=45.15 E-value=1.1e+02 Score=22.12 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 4 QIRKMDLEARSLQP--NVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 4 ~i~qme~E~~~~~~--~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
.-++.|..+.++|+ ..-..-..+++.+..++.....++....
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998 2234445788888888888888887654
No 136
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.17 E-value=61 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 3 WQIRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~-r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
+.+..||.|+++++..- -.+++.++..++.++..++..+...+.
T Consensus 100 ~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 100 QTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777877775532 445667777777777777666665554
No 137
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.16 E-value=2.8e+02 Score=26.12 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII 165 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~ 165 (174)
+...+...++.++...+.=.....++..+ ......+-..++..........+..+..=.+.=-+++++++++++++++
T Consensus 355 t~~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~ 432 (806)
T PF05478_consen 355 TSDVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLL 432 (806)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544444444434444444444 2223334455556666666677777766555555555555444444444
Q ss_pred H
Q 030656 166 L 166 (174)
Q Consensus 166 ~ 166 (174)
+
T Consensus 433 l 433 (806)
T PF05478_consen 433 L 433 (806)
T ss_pred H
Confidence 3
No 138
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=43.96 E-value=38 Score=24.52 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030656 150 KWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~ 172 (174)
|.++.++++++.+.++++++.+.
T Consensus 75 k~v~~~~~~~i~~s~~~~~~~r~ 97 (136)
T cd00922 75 KTVFGGVLAFIGITGVIFGLQRA 97 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666554
No 139
>PRK09738 small toxic polypeptide; Provisional
Probab=42.53 E-value=16 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~ 168 (174)
+|..++.++++|+.+++|.+
T Consensus 5 ~~~~~~~livvCiTvL~f~~ 24 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTY 24 (52)
T ss_pred cceehhhHHHHHHHHHHHHH
Confidence 45666777777766665553
No 140
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=42.47 E-value=61 Score=18.00 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVL 160 (174)
Q Consensus 149 dk~il~~ii~~l 160 (174)
.+||.+++..++
T Consensus 14 r~Wi~F~l~mi~ 25 (38)
T PF09125_consen 14 RGWIAFALAMIL 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 356665554443
No 141
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=42.23 E-value=43 Score=24.58 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 030656 154 GTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~~ 173 (174)
++++++++++.++++..++|
T Consensus 125 i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44566777777777777776
No 142
>CHL00038 psbL photosystem II protein L
Probab=41.98 E-value=50 Score=18.33 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILY 169 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~ 169 (174)
+.|+..+++++++.|--|
T Consensus 18 Ly~GLLlifvl~vlfssy 35 (38)
T CHL00038 18 LYWGLLLIFVLAVLFSNY 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555556555554
No 143
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=41.94 E-value=61 Score=17.87 Aligned_cols=15 Identities=33% Similarity=0.235 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVI 162 (174)
Q Consensus 148 ~dk~il~~ii~~l~~ 162 (174)
+=|+..|.++++++.
T Consensus 3 ~LK~~Vy~vV~ffv~ 17 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVS 17 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEEeehhhHHHHHH
Confidence 446666665555443
No 144
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=41.46 E-value=39 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILY 169 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~ 169 (174)
|+||+.++++|+.++|
T Consensus 133 ClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4433333333333333
No 145
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=41.46 E-value=24 Score=28.34 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 141 AMSRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
.+..+-.+.+.|++++++++++++.+.+
T Consensus 188 SVG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 188 SVGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777666666554
No 146
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=40.81 E-value=46 Score=18.57 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILY 169 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~ 169 (174)
+.|+..+++++++.|--|
T Consensus 19 Ly~GlLlifvl~vLFssY 36 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSY 36 (39)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345555666666655555
No 147
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.68 E-value=1.8e+02 Score=22.85 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=28.7
Q ss_pred hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHH
Q 030656 80 TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 133 (174)
Q Consensus 80 ~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~ 133 (174)
.+++..--..|..+...+.+++.--..+...|..-...|.++..++......+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~ 144 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK 144 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence 445555556666666666666655555555555544444444444443333333
No 148
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=40.54 E-value=8.8 Score=25.80 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 030656 152 IIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
...+|++++.+.+++..|..|+|
T Consensus 38 v~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 38 VEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred eeeeehHHHHHHHHHHHHHHHHH
Confidence 34455555666666666766654
No 149
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.36 E-value=3.8e+02 Score=26.52 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 105 VSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 105 ~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
.+....|..|.+.+.....+-..+.+.+.......+.+.-+
T Consensus 268 ~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQ 308 (1109)
T PRK10929 268 RELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQ 308 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777666666666666666666665555444
No 150
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=40.22 E-value=53 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 139 LTAMSRRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 139 l~~i~rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
+..+.+|-.+.+.++++|+++++.+..++
T Consensus 198 vSsvGsrfar~Ra~~ffilal~~avta~~ 226 (275)
T KOG4684|consen 198 VSSVGSRFARRRALLFFILALTVAVTAVI 226 (275)
T ss_pred hhhhhhHHhhhhhHHHHHHHHHHHHHHHH
Confidence 45677777888888888777665544443
No 151
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=40.22 E-value=1.1e+02 Score=20.24 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhh
Q 030656 93 SRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVD 129 (174)
Q Consensus 93 s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~ 129 (174)
+...+.+..+.=..+-.++..+...|..+..-+..+.
T Consensus 27 t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 27 TLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455556666666666665555443
No 152
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=39.74 E-value=39 Score=27.91 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 030656 22 VLLAKLREYKS 32 (174)
Q Consensus 22 ~~~~~~~~~~~ 32 (174)
+|.+|+...|.
T Consensus 54 EYdErm~~kRq 64 (299)
T PF02009_consen 54 EYDERMQEKRQ 64 (299)
T ss_pred HHHhhhhhhHH
Confidence 34444433333
No 153
>PHA02849 putative transmembrane protein; Provisional
Probab=39.03 E-value=57 Score=21.34 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 030656 152 IIGTVVAVL 160 (174)
Q Consensus 152 il~~ii~~l 160 (174)
|+.++++++
T Consensus 20 i~v~v~vI~ 28 (82)
T PHA02849 20 ILVFVLVIS 28 (82)
T ss_pred HHHHHHHHH
Confidence 333333333
No 154
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.99 E-value=85 Score=23.89 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
...+.+...+..+.|..+..|....+.|..+|+++.+.++.....
T Consensus 119 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 119 ALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666667777888888999999999999999999998765443
No 155
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=38.80 E-value=36 Score=25.59 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 142 MSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 142 i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
|++..-.-|.++++..+++.+++++++|.+.
T Consensus 92 ~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v 122 (167)
T KOG4075|consen 92 RNRGSNEWKTVFGVAGFFLGLTISVILFGKV 122 (167)
T ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 3344444578888888999999999988765
No 156
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=38.76 E-value=1.9e+02 Score=22.66 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHhcHhhhhhhHHHH
Q 030656 110 DLSSQRQSLLHAHNTLHGVDDNVSKS 135 (174)
Q Consensus 110 ~L~~Qre~L~~~~~~~~~i~~~l~~s 135 (174)
.|..=-+.+..+..++..+...+...
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 33333333333333333333333333
No 157
>PRK05529 cell division protein FtsQ; Provisional
Probab=38.41 E-value=30 Score=27.67 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 139 LTAMSRRMSRNKWIIGTVVAVL 160 (174)
Q Consensus 139 l~~i~rr~~~dk~il~~ii~~l 160 (174)
.+++.||..+.+.++.++++++
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~ 45 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAV 45 (255)
T ss_pred hhchhhhccchhhhHHHHHHHH
Confidence 6777777777776666544433
No 158
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=37.80 E-value=44 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
..|.+++..+|+++.++.++..+|+|.|
T Consensus 70 l~N~li~i~viv~~Tfllv~ly~~rfyk 97 (406)
T KOG2736|consen 70 LLNALIMISVIVVMTFLLVVLYKYRFYK 97 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788777777766666666666643
No 159
>PRK11637 AmiB activator; Provisional
Probab=37.60 E-value=2.6e+02 Score=23.93 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 21 AVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
.....++++.+.+++++.+++..+.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~ 67 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQ 67 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665443
No 160
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=37.57 E-value=39 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
...-+..+++++++++++.++||+++
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr~~ 367 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYRLA 367 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777888888888899999854
No 161
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=37.38 E-value=17 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 030656 154 GTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+++|+|+..++.|+.|+.+.|
T Consensus 374 vavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred ehhHHHHHHHHHHHhhheeec
Confidence 456667777888888865544
No 162
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.89 E-value=51 Score=19.14 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 030656 158 AVLVIAIILILY 169 (174)
Q Consensus 158 ~~l~~~i~~v~~ 169 (174)
+++++++++++|
T Consensus 17 ~~~~~F~gi~~w 28 (49)
T PF05545_consen 17 LFFVFFIGIVIW 28 (49)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 163
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=36.83 E-value=35 Score=28.42 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 030656 161 VIAIILILYF 170 (174)
Q Consensus 161 ~~~i~~v~~~ 170 (174)
+++|++|+|.
T Consensus 165 l~vla~ivY~ 174 (318)
T PF06682_consen 165 LLVLAFIVYS 174 (318)
T ss_pred HHHHHHHHHH
Confidence 3344455553
No 164
>PRK09793 methyl-accepting protein IV; Provisional
Probab=36.56 E-value=3e+02 Score=24.25 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHH
Q 030656 97 MLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKV 138 (174)
Q Consensus 97 ~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~l 138 (174)
+.++.+.+.++......=.+.+..+...+.++.........+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~I~~i 360 (533)
T PRK09793 319 ARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDI 360 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444443333333
No 165
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.52 E-value=4.6e+02 Score=26.40 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHhhH-HhhcCCCCCc-ccccHHHHHHHhhhhHHhhchhHHHHHHHHHHHHHHH
Q 030656 25 AKLREYKSDLNNLKSEVKRLVSGNLNAAARD-ELLESGMADA-LTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETEE 102 (174)
Q Consensus 25 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~-~Ll~~~~~~~-~~~~~~~r~~ll~~~~~l~~~~~~L~~s~r~~~ete~ 102 (174)
+-+..+...+.+|...+.++. +|. +|-..+.... .+...+....+-...+.|...+-+......+...|++
T Consensus 1164 ~CF~~WD~il~~L~~rt~rl~-------~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~ 1236 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELALRTHRLI-------NRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATES 1236 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 345566667777777776665 232 2222211110 0111233334444445555555555555555555554
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 103 LGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 103 ~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
.- ..|..=++.|..+..++.+|.+.++.+++-|....|.
T Consensus 1237 lr----~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1237 LR----RQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HH----HHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 33 2455567778888888888888888777777666654
No 166
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=36.48 E-value=41 Score=22.19 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030656 159 VLVIAIILILY 169 (174)
Q Consensus 159 ~l~~~i~~v~~ 169 (174)
++.++++.++|
T Consensus 17 iiaIvvW~iv~ 27 (81)
T PF00558_consen 17 IIAIVVWTIVY 27 (81)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHH
Confidence 33444444434
No 167
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=36.34 E-value=1.1e+02 Score=23.96 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGN 48 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 48 (174)
.++.+.-.+..+.|+.+..|.+..+.|..+|.++.+.++......
T Consensus 104 ~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 104 MAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKL 148 (256)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555566667899999999999999999999999998765543
No 168
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=35.98 E-value=65 Score=23.42 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
..+.+.+|+.|+++- ++++|+|.++
T Consensus 50 ~l~tl~~Y~~iAv~n-AvvLI~WA~Y 74 (137)
T PRK14585 50 ARSRLQFYFLLAVAN-AVVLIVWALY 74 (137)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 667888999888864 6667888875
No 169
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=35.60 E-value=48 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
++|.-++|.-+.=|+ +..+|.+++.++.+|||.
T Consensus 161 k~lnylARNFYNlr~---lALflAFaINFILLFYKV 193 (274)
T PF06459_consen 161 KFLNYLARNFYNLRF---LALFLAFAINFILLFYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 455666666554443 344455667888888885
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.53 E-value=66 Score=21.60 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k 171 (174)
..+..+++|+++.+|+-+.|
T Consensus 38 lvI~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCCKK 57 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555543
No 171
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=34.96 E-value=45 Score=28.40 Aligned_cols=31 Identities=3% Similarity=0.074 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 141 AMSRRMSRNKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k 171 (174)
.|.||..+..++=.++++.++++.++++|++
T Consensus 77 ~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~ 107 (370)
T PLN03094 77 GFGKRSVWEGGVGLFLLSGAALLALTLAWLR 107 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3677888887777777777666667777764
No 172
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=34.81 E-value=1.5e+02 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 3 WQIRKMDLEARSLQP---NVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 3 ~~i~qme~E~~~~~~---~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+.|+......+-+++ +....+.+++..+-+.|+++...|..++
T Consensus 27 eqik~~ql~s~vi~G~n~~l~k~L~eki~~Fh~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 27 EQIKNNQLQSNVITGFNNQLQKQLSEKIHKFHSILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555533 4467889999999999999999987654
No 173
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=34.50 E-value=3.3e+02 Score=24.16 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 21 AVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
..+...+..+..+++++...|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ 109 (554)
T PRK15041 88 AELMQSASISLKQAEKNWADYE 109 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 174
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=33.94 E-value=1.3e+02 Score=19.48 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 111 LSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 111 L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
|....++|.+++.-+..+.+.|..+..-|..+.+.
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~ 37 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQET 37 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666555
No 175
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=33.93 E-value=66 Score=29.99 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
.-.|.+.++.+++.++..+-.... +...+...--+...|+.-+.....+..++.++++++++++.|.++.
T Consensus 524 ~~~~~~~~~~~~~~~i~~~~~~~g--------v~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~ 593 (727)
T COG1033 524 TQGELEDVGREILRDIEKENIPTG--------VKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPL 593 (727)
T ss_pred chhHHHHHHHHHHHHHHhhcCCCC--------cEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchH
Confidence 345566777776666665544333 3356666677788888888888888888888888888888887664
No 176
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.33 E-value=3.3e+02 Score=23.74 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
....|..-.+.+.+..+.-.....+|..+...+..+...+..+..++...++-|..+..+
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 333344444444445555555556666666666666665555555555555555444443
No 177
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=32.99 E-value=7.5 Score=30.57 Aligned_cols=13 Identities=38% Similarity=0.375 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhcC
Q 030656 162 IAIILILYFKLAK 174 (174)
Q Consensus 162 ~~i~~v~~~k~~~ 174 (174)
++.+...||||.|
T Consensus 172 ~gGGa~yYfK~~K 184 (218)
T PF14283_consen 172 IGGGAYYYFKFYK 184 (218)
T ss_pred hhcceEEEEEEec
Confidence 3334445566543
No 178
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=32.98 E-value=1.1e+02 Score=18.68 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~k~ 172 (174)
..|++..-+.+++|++.++..+|.-|
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~l~ 51 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYLLY 51 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45788888888888888888877643
No 179
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.78 E-value=1.4e+02 Score=19.41 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=9.3
Q ss_pred HHHHHHHHhHHHHHHHHhcHhhhh
Q 030656 106 SILQDLSSQRQSLLHAHNTLHGVD 129 (174)
Q Consensus 106 ~~l~~L~~Qre~L~~~~~~~~~i~ 129 (174)
++-.-++..++.+..++.++..++
T Consensus 48 e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 48 EINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333334444444443333333
No 180
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=32.69 E-value=1.9e+02 Score=20.79 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=53.0
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 82 RVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVL 160 (174)
Q Consensus 82 ~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l 160 (174)
.++.-...|.+-.....--.+...+++.--..|...|..+..+++.+...+..--.-++.|-...++..+.+..-|-++
T Consensus 53 kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vmkqny~lslqie~l 131 (177)
T PF12495_consen 53 KLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVMKQNYVLSLQIEFL 131 (177)
T ss_pred cccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3333344444433333333455566777777899999999999999988887777777778777777777776655443
No 181
>PRK10404 hypothetical protein; Provisional
Probab=32.60 E-value=1.6e+02 Score=20.07 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 146 MSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 146 ~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
+..+-|=-.+|.+.+.+++++.+
T Consensus 76 V~e~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 76 VHEKPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHH
Confidence 33444554554444444444443
No 182
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=32.11 E-value=37 Score=28.37 Aligned_cols=13 Identities=23% Similarity=0.345 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 030656 23 LLAKLREYKSDLN 35 (174)
Q Consensus 23 ~~~~~~~~~~~l~ 35 (174)
+-.++++.|+++.
T Consensus 15 ~G~~Lr~aRe~~G 27 (331)
T PRK10856 15 TGERLRQAREQLG 27 (331)
T ss_pred HHHHHHHHHHHcC
Confidence 4555666555443
No 183
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=32.00 E-value=1.2e+02 Score=18.67 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 030656 16 QPNVKAVLLAKLREYKSDLNNLKSE 40 (174)
Q Consensus 16 ~~~~r~~~~~~~~~~~~~l~~l~~~ 40 (174)
+|+.+..+..++.+|....+.++..
T Consensus 44 ~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 44 NPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566888999999999988888764
No 184
>PHA02655 hypothetical protein; Provisional
Probab=31.86 E-value=28 Score=22.43 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 030656 154 GTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k~~~ 174 (174)
-++++...+++++++|.|+.|
T Consensus 71 pfvivmisciflviiyikyhk 91 (94)
T PHA02655 71 PFVIVMISCIFLVIIYIKYHK 91 (94)
T ss_pred HHHHHHHHHHHhhheeeeecc
Confidence 345555566666677766643
No 185
>PRK11281 hypothetical protein; Provisional
Probab=31.85 E-value=4.4e+02 Score=26.11 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCCCCcccccHHHHHHHhhhhHHhhchhHHHHHHHHHHHHHH
Q 030656 22 VLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTMLETE 101 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~r~~~ete 101 (174)
.+..+.+.++.+.+.+++.+..+.........+-+-+............ ...-+-+-...+.+..+.|.+.+.-+.+.+
T Consensus 70 ~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~-~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~N 148 (1113)
T PRK11281 70 ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL-STLSLRQLESRLAQTLDQLQNAQNDLAEYN 148 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHH
Q 030656 102 ELGVSILQDLSSQRQSLLHAHNTLHGVDDNVS 133 (174)
Q Consensus 102 ~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~ 133 (174)
..-.+.-+...+-+..|..+..++.++...+.
T Consensus 149 sqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 149 SQLVSLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
No 186
>PHA03240 envelope glycoprotein M; Provisional
Probab=31.54 E-value=52 Score=25.96 Aligned_cols=17 Identities=24% Similarity=0.757 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIIL 166 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~ 166 (174)
-||+.+||++.++++++
T Consensus 214 ~WIiilIIiIiIIIL~c 230 (258)
T PHA03240 214 AWIFIAIIIIIVIILFF 230 (258)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 187
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=31.48 E-value=1.2e+02 Score=20.21 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=23.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 15 LQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 15 ~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+||.+| |.+=++.|+.++..+...++.+-
T Consensus 12 lpP~eR--w~~i~~~~k~~i~~l~~~~~~~~ 40 (95)
T PF15508_consen 12 LPPEER--WVQIAKDYKDEIRELIEVLKDLL 40 (95)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 577776 88999999999999888887654
No 188
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=31.38 E-value=61 Score=23.93 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 030656 146 MSRNKWIIGTVVAV 159 (174)
Q Consensus 146 ~~~dk~il~~ii~~ 159 (174)
-+.||+|+.+.+.+
T Consensus 116 gY~nklilaisvtv 129 (154)
T PF14914_consen 116 GYNNKLILAISVTV 129 (154)
T ss_pred cccchhHHHHHHHH
Confidence 35567777654443
No 189
>PRK11901 hypothetical protein; Reviewed
Probab=31.34 E-value=57 Score=27.25 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v 167 (174)
.+.++++|+||+++|+.|
T Consensus 37 h~MiGiGilVLlLLIi~I 54 (327)
T PRK11901 37 HMMIGIGILVLLLLIIAI 54 (327)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555444
No 190
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=31.11 E-value=89 Score=16.54 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~ 170 (174)
.+++++.+.+++..+...+|+
T Consensus 9 W~~l~~~f~~~~~~~~~~~~f 29 (32)
T MTH00158 9 WLILFILFLITFILFNILNYF 29 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 191
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=31.02 E-value=2.7e+02 Score=22.08 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 030656 7 KMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLN 50 (174)
Q Consensus 7 qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 50 (174)
++...+-.+.|++.+.+.+-+-..|.++.+.+.++.++.+.++.
T Consensus 108 ~Y~~~lgKl~~~EeD~vWqvIIg~R~E~~dk~~e~~rlEs~w~s 151 (234)
T PF09057_consen 108 RYLSSLGKLNSAEEDAVWQVIIGQRVEMNDKQQECLRLESTWMS 151 (234)
T ss_dssp HHHHCTTTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444667778888889999999999999999998887754
No 192
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.86 E-value=54 Score=26.93 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=3.5
Q ss_pred HHhhcCC
Q 030656 55 DELLESG 61 (174)
Q Consensus 55 ~~Ll~~~ 61 (174)
++.||+.
T Consensus 117 ~~~fg~e 123 (295)
T TIGR01478 117 EEMFGDE 123 (295)
T ss_pred HHHhCCc
Confidence 4556553
No 193
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.82 E-value=61 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~ 170 (174)
.|+++||++++++|.+++|.
T Consensus 395 ~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 395 IIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777775
No 194
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.80 E-value=95 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREY 30 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~ 30 (174)
=+++++.+.+.+|+++++...+-.++|
T Consensus 6 fL~~L~~~L~~lp~~e~~e~l~~Y~e~ 32 (181)
T PF08006_consen 6 FLNELEKYLKKLPEEEREEILEYYEEY 32 (181)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467888888888888776654444443
No 195
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.62 E-value=1.3e+02 Score=23.91 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
...+.+.-.+..+.|..+..|....+.|..+|+.+.+.++.....
T Consensus 123 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 167 (266)
T cd01018 123 IMAENIYEALAELDPQNATYYQANLDALLAELDALDSEIRTILSK 167 (266)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777888889999999999999999999999876543
No 196
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=30.50 E-value=3.9e+02 Score=23.72 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=11.5
Q ss_pred HHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 116 QSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 116 e~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
+.+..+...+.++.........++..|
T Consensus 342 ~~~~~~~~~~~~l~~~~~~I~~i~~~I 368 (554)
T PRK15041 342 KVVDNVVQTMRDISTSSQKIADIISVI 368 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 197
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=30.38 E-value=78 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030656 153 IGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~k~ 172 (174)
.|.++-++++++.+.+|+++
T Consensus 51 IW~iiN~~il~~A~~vyLry 70 (82)
T PF03554_consen 51 IWAIINVVILLCAFCVYLRY 70 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666654
No 198
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=30.22 E-value=1.7e+02 Score=19.50 Aligned_cols=48 Identities=8% Similarity=0.160 Sum_probs=34.3
Q ss_pred HHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 030656 112 SSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS---RRMSRNKWIIGTVVAV 159 (174)
Q Consensus 112 ~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~---rr~~~dk~il~~ii~~ 159 (174)
..-++.+..+..++......+....+-.+... |+.++.++|--+.++=
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~lE 54 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAILE 54 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33445566667777777777777777777776 8899999888776653
No 199
>PTZ00370 STEVOR; Provisional
Probab=30.17 E-value=56 Score=26.86 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=4.1
Q ss_pred HHhhcCC
Q 030656 55 DELLESG 61 (174)
Q Consensus 55 ~~Ll~~~ 61 (174)
++.||+.
T Consensus 116 ee~fg~~ 122 (296)
T PTZ00370 116 EEMFGDE 122 (296)
T ss_pred HHHhcCc
Confidence 5666653
No 200
>PF09815 XK-related: XK-related protein; InterPro: IPR018629 This entry is represented by the multipass membrane protein XK, which may be involved in sodium-dependent transport of neutral amino acids or oligopeptides. It forms a heterodimer with Kell. In humans, Kell is an 93kDa type II membrane glycoprotein with endothelin-3-converting enzyme activity that is linked by a single disulphide bond to XK, that spans the membrane ten times. An absence of XK leads to clinical symptoms termed the McLeod syndrome [MIM:314850], an X-linked multi-system disorder characterised by late onset abnormalities in the neuromuscular and hematopoietic systems [, ].
Probab=29.65 E-value=71 Score=26.46 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 030656 156 VVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 156 ii~~l~~~i~~v~~~k~~~ 174 (174)
++..++.+.+.++||+++|
T Consensus 312 ~~~~~lGi~~m~~YY~~~H 330 (332)
T PF09815_consen 312 LGGFLLGIAFMLLYYRFFH 330 (332)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3444445555566666654
No 201
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.43 E-value=84 Score=20.43 Aligned_cols=16 Identities=0% Similarity=0.308 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 155 TVVAVLVIAIILILYF 170 (174)
Q Consensus 155 ~ii~~l~~~i~~v~~~ 170 (174)
++-++++++++..+|.
T Consensus 7 ~~PliiF~ifVaPiWL 22 (75)
T PRK09458 7 AIPLTIFVLFVAPIWL 22 (75)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333334444444454
No 202
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=29.42 E-value=1.4e+02 Score=19.19 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 142 MSRRMSRNKWIIGTV 156 (174)
Q Consensus 142 i~rr~~~dk~il~~i 156 (174)
..||-++.-+++.+.
T Consensus 9 Y~rrSr~~efLF~il 23 (72)
T PF13198_consen 9 YPRRSRKTEFLFFIL 23 (72)
T ss_pred ccchhHHHHHHHHHH
Confidence 344544444444333
No 203
>PF13997 YqjK: YqjK-like protein
Probab=29.24 E-value=1.6e+02 Score=18.83 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 108 LQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 108 l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
+.+..+||..|-.......++.+-++++-..+..+.+.
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~~ 39 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRRH 39 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Confidence 45678999999999999999999999999988865543
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.86 E-value=3.3e+02 Score=22.46 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
.+..|+.+...+... ...+..-+...+...+.|..++..++
T Consensus 157 ~~~~L~~D~~~L~~~-~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQ-LEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554321 12233333333333444444444333
No 205
>PTZ00046 rifin; Provisional
Probab=28.71 E-value=67 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~ 168 (174)
.+|-.+||+++.++|.+|+
T Consensus 320 SiiAIvVIVLIMvIIYLIL 338 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLIL 338 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 206
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=28.61 E-value=82 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~~ 169 (174)
.-++++..++++++++++-+|
T Consensus 24 s~li~~~LilfviF~~~L~~y 44 (83)
T PF05814_consen 24 SELIITLLILFVIFFCVLQVY 44 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 207
>COG4640 Predicted membrane protein [Function unknown]
Probab=28.53 E-value=71 Score=27.54 Aligned_cols=13 Identities=23% Similarity=0.079 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLV 161 (174)
Q Consensus 149 dk~il~~ii~~l~ 161 (174)
.++|.|..+++.+
T Consensus 50 K~ii~was~a~~l 62 (465)
T COG4640 50 KKIIPWASGAFIL 62 (465)
T ss_pred ceeehhHHHHHHH
Confidence 3566666544433
No 208
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=28.39 E-value=89 Score=21.74 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~~~ 170 (174)
=|.+++.++.++.+.++.++++
T Consensus 15 ~r~~l~~~l~ilT~Gll~L~~~ 36 (119)
T PF12409_consen 15 WRTILYYFLCILTLGLLYLVFR 36 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666665554
No 209
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=28.34 E-value=68 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k 171 (174)
.-.+|-.+||+++.++|.+|+=|+
T Consensus 313 iaSiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666666666443
No 210
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=27.83 E-value=66 Score=25.88 Aligned_cols=6 Identities=0% Similarity=-0.191 Sum_probs=2.2
Q ss_pred HHHHHH
Q 030656 153 IGTVVA 158 (174)
Q Consensus 153 l~~ii~ 158 (174)
.|++|+
T Consensus 204 ~wl~i~ 209 (268)
T PF09451_consen 204 TWLFII 209 (268)
T ss_pred HHHHHH
Confidence 333333
No 211
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.76 E-value=86 Score=23.52 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILY 169 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~ 169 (174)
|++++++.++++++++
T Consensus 99 ~Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 99 YVLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 212
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=27.72 E-value=78 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 146 MSRNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 146 ~~~dk~il~~ii~~l~~~i~~v~~ 169 (174)
-+-.|++++++.++|+++.+++||
T Consensus 33 PREr~mL~g~Ga~L~Lvi~Y~~~W 56 (181)
T COG3149 33 PRERKMLLGGGAFLLLVILYLLIW 56 (181)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344566677777777666666655
No 213
>PRK10772 cell division protein FtsL; Provisional
Probab=27.69 E-value=1.3e+02 Score=20.96 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=16.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 030656 140 TAMSRRMSR-NKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 140 ~~i~rr~~~-dk~il~~ii~~l~~~i~~v 167 (174)
+-|..-.+. +|+.+.+++++++.++++|
T Consensus 13 ~iI~~Dl~~~~kl~l~Ll~~vv~SAl~VV 41 (108)
T PRK10772 13 GVIGDDLLRNGKLPLCLFIAVIVSAVTVV 41 (108)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 334444444 7777766666666665544
No 214
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.56 E-value=4.3e+02 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.0
Q ss_pred HHHHHHHhcHhhhhhhHHHHH
Q 030656 116 QSLLHAHNTLHGVDDNVSKSK 136 (174)
Q Consensus 116 e~L~~~~~~~~~i~~~l~~s~ 136 (174)
+.+..+...+.++........
T Consensus 340 ~~~~~~~~~~~~l~~~~~~I~ 360 (553)
T PRK15048 340 KVVDGVVKTMHEIADSSKKIA 360 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444433333333
No 215
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=27.42 E-value=20 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 137 KVLTAMSRR-MSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 137 ~ll~~i~rr-~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
+....+.++ -..-|++.++.++++++++++++|+-|+
T Consensus 181 ~~~~~V~Kk~~k~~K~~~i~l~~l~v~l~~~~~Y~~f~ 218 (359)
T PF10140_consen 181 KTYILVPKKKWKIFKYASIGLSILLVLLLIPLGYLYFF 218 (359)
T ss_dssp --------------------------------------
T ss_pred hhheEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444 4455788877777888888888887665
No 216
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.35 E-value=88 Score=18.32 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhc
Q 030656 159 VLVIAIILILYFKLA 173 (174)
Q Consensus 159 ~l~~~i~~v~~~k~~ 173 (174)
++.+.+.+-.| ||.
T Consensus 29 vL~v~V~i~v~-kwi 42 (46)
T PF10389_consen 29 VLGVIVGIAVY-KWI 42 (46)
T ss_dssp HHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHH-HHH
Confidence 33334444444 554
No 217
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.26 E-value=1.9e+02 Score=19.20 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 23 LLAKLREYKSDLNNLKSEV 41 (174)
Q Consensus 23 ~~~~~~~~~~~l~~l~~~~ 41 (174)
+.+++.+|+.+++.....+
T Consensus 10 lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 10 LEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444
No 218
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=27.26 E-value=1.6e+02 Score=18.28 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcC
Q 030656 21 AVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLES 60 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~ 60 (174)
.++.+|+.-++.++..++.++.+-..+. ..-+.||+.
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~sr---sAAeaLFrr 64 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKASR---SAAEALFRR 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHhc
Confidence 4677888888889999998887644332 344566653
No 219
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=27.06 E-value=1.9e+02 Score=19.09 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=31.9
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 9 DLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 9 e~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
-...-.+++.++.++..-...|..+...++.++...+.
T Consensus 36 ~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~ 73 (125)
T PF13801_consen 36 LADMLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQ 73 (125)
T ss_dssp HHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999987664
No 220
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=26.94 E-value=1.1e+02 Score=16.32 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030656 151 WIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~ 172 (174)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (31)
T PF05115_consen 4 IISYFGFLLAALTLTLVLFIGL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777766667767766544
No 221
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=26.93 E-value=92 Score=24.42 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=8.9
Q ss_pred HHHHHHhcCChhhHHHH
Q 030656 7 KMDLEARSLQPNVKAVL 23 (174)
Q Consensus 7 qme~E~~~~~~~~r~~~ 23 (174)
.+.-=...+|+.+|...
T Consensus 69 a~~Et~~~Lp~~qk~~i 85 (215)
T PHA02947 69 TFKEVISTLPEKERREL 85 (215)
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 33333445666666555
No 222
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.86 E-value=2.4e+02 Score=20.17 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=17.6
Q ss_pred HHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 109 QDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 109 ~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
.+|..|.|..+.+.+.+..+..++...+.-+..+..
T Consensus 75 ~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 75 DKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344445555555555555555555555544444443
No 223
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=26.80 E-value=1.8e+02 Score=23.84 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=18.2
Q ss_pred HHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 117 SLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 117 ~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
.|.++...+......|.+|...=++-.+.
T Consensus 231 Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 231 NIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred hhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 45566666666777777776666554443
No 224
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.71 E-value=2.4e+02 Score=20.15 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhh
Q 030656 95 RTMLETEELGVSILQDLSSQRQSLLHAHNTLHGV 128 (174)
Q Consensus 95 r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i 128 (174)
.-+++..++..+|.++...=++.+..++..+..+
T Consensus 75 ~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 75 DKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444555555444444333333333333333
No 225
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.67 E-value=1.5e+02 Score=18.14 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 22 VLLAKLREYKSDLNNLKSEVKRL 44 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~~ 44 (174)
.|..++.+...+++.++.+...+
T Consensus 14 ~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 14 TLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444433
No 226
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=26.66 E-value=1.6e+02 Score=19.50 Aligned_cols=18 Identities=39% Similarity=0.514 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILY 169 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~ 169 (174)
|+..+++++++.++.++.
T Consensus 38 iivvVvVlvVvvivg~LL 55 (93)
T PF08999_consen 38 IIVVVVVLVVVVIVGALL 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeehhHHHHHHHHH
Confidence 333344444444444433
No 227
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.64 E-value=1.9e+02 Score=23.34 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..++.+.-.+..+.|..+..|....+.|.++|+.+...+++....
T Consensus 132 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 176 (286)
T cd01019 132 EVAQAVAEKLSALDPDNAATYAANLEAFNARLAELDATIKERLAP 176 (286)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666667777888889999999999999999999998865543
No 228
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.59 E-value=6.6e+02 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030656 18 NVKAVLLAKLREYKSDLNNLKSEVKRLVSGN 48 (174)
Q Consensus 18 ~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 48 (174)
..+..|..++..+..++..+......+....
T Consensus 881 ~~r~~le~~L~el~~el~~l~~~~~~~~~~~ 911 (1311)
T TIGR00606 881 QRRQQFEEQLVELSTEVQSLIREIKDAKEQD 911 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777777766666655443
No 229
>PHA02955 hypothetical protein; Provisional
Probab=26.57 E-value=87 Score=24.56 Aligned_cols=12 Identities=0% Similarity=0.077 Sum_probs=8.0
Q ss_pred HhcCChhhHHHH
Q 030656 12 ARSLQPNVKAVL 23 (174)
Q Consensus 12 ~~~~~~~~r~~~ 23 (174)
...+||.+|...
T Consensus 74 ~~~Lp~~qk~~i 85 (213)
T PHA02955 74 IENFPEKEQKEI 85 (213)
T ss_pred HHhCCHHHHHHH
Confidence 356777777666
No 230
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.35 E-value=2e+02 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCh
Q 030656 3 WQIRKMDLEARSLQP 17 (174)
Q Consensus 3 ~~i~qme~E~~~~~~ 17 (174)
.-+.++..|.+++++
T Consensus 47 ~Ei~~l~~E~~~iS~ 61 (161)
T PF04420_consen 47 KEILQLKRELNAISA 61 (161)
T ss_dssp HHHHHHHHHHTTS-T
T ss_pred HHHHHHHHHHHcCCc
Confidence 345666677777654
No 231
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.34 E-value=1.9e+02 Score=19.33 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 21 AVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..|..+++....+...+..+...++..
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666555543
No 232
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.30 E-value=3.4e+02 Score=21.65 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhH----HhhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHH
Q 030656 70 ADQRSRLMMSTE----RVNQSTDRIKD-SRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKK 137 (174)
Q Consensus 70 ~~~r~~ll~~~~----~l~~~~~~L~~-s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ 137 (174)
...+++++++++ .+..+-+++.. +..+..|++++|. ++. ..-.-+.++.+++..+...+..-++
T Consensus 140 ~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~-llD---dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 140 VQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGR-LLD---DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555565533 33444333333 3334445555544 333 4456677777777777776666666
No 233
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=26.26 E-value=45 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.239 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 151 WIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+++|+.+.++ +++.++|+-|+|
T Consensus 58 i~~Y~G~gil--~~gm~IyllFyR 79 (79)
T PF10808_consen 58 IFAYFGCGIL--SLGMIIYLLFYR 79 (79)
T ss_pred HHHHHHHHHH--HHHHhheeEEeC
Confidence 4556666655 455566665554
No 234
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=26.07 E-value=47 Score=19.16 Aligned_cols=16 Identities=6% Similarity=0.303 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILI 167 (174)
Q Consensus 152 il~~ii~~l~~~i~~v 167 (174)
.++.++++|+-++++.
T Consensus 3 ~l~~liviCiTvl~~~ 18 (43)
T PF01848_consen 3 ALLCLIVICITVLIFT 18 (43)
T ss_pred eehhHHHHHHHHHHHH
Confidence 3455566665555444
No 235
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=26.06 E-value=1.5e+02 Score=17.75 Aligned_cols=21 Identities=0% Similarity=0.056 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~ 170 (174)
.+++++.+.++++++...+|+
T Consensus 9 W~~l~~~f~~~~~~~~~~~~~ 29 (53)
T MTH00260 9 WLTAMIIFWFILLIFASSMWW 29 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554
No 236
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=26.00 E-value=1.3e+02 Score=22.08 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=28.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCCC
Q 030656 8 MDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESGM 62 (174)
Q Consensus 8 me~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~~ 62 (174)
++.|.+.--...-..|--++..++.++..|.+..+.+= +.+|++|-.+|.
T Consensus 37 LeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yC-----eanrDELTe~GK 86 (170)
T COG4396 37 LETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYC-----EANRDELTENGK 86 (170)
T ss_pred HHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----HhCHHHHhcCCC
Confidence 33444433333334455566666666666666554433 368999986654
No 237
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=25.95 E-value=1.1e+02 Score=20.41 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 153 IGTVVAVLVIAIILI 167 (174)
Q Consensus 153 l~~ii~~l~~~i~~v 167 (174)
+|+..+++++++++|
T Consensus 42 FWv~LA~FV~~lF~i 56 (90)
T PF15183_consen 42 FWVSLAAFVVFLFLI 56 (90)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 238
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=25.95 E-value=2.4e+02 Score=20.02 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~~~k 171 (174)
.|++...+++..+++.++++|.+
T Consensus 37 EKvly~~~~va~L~vai~ii~~q 59 (120)
T COG4839 37 EKVLYTTLAVAALVVAISIISVQ 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766665555555555555543
No 239
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=25.93 E-value=96 Score=21.82 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~ 170 (174)
+++.+.|+++++.+.+|.|.
T Consensus 62 lffvglii~LivSLaLVsFv 81 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFV 81 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 44444555555544444443
No 240
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=25.85 E-value=2.5e+02 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHH
Q 030656 136 KKVLTAMSRRM-SRNKWIIGT 155 (174)
Q Consensus 136 ~~ll~~i~rr~-~~dk~il~~ 155 (174)
.+-++...||. ..++.|.++
T Consensus 49 ~~el~~L~rR~~li~~ai~~~ 69 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLA 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666663 334444443
No 241
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=25.81 E-value=29 Score=24.54 Aligned_cols=7 Identities=29% Similarity=0.989 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 030656 163 AIILILY 169 (174)
Q Consensus 163 ~i~~v~~ 169 (174)
.++||||
T Consensus 74 viffviy 80 (150)
T PF06084_consen 74 VIFFVIY 80 (150)
T ss_pred HHhheeE
Confidence 3344444
No 242
>PHA03386 P10 fibrous body protein; Provisional
Probab=25.68 E-value=2.2e+02 Score=19.29 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHhcHhhhhhhHH
Q 030656 108 LQDLSSQRQSLLHAHNTLHGVDDNVS 133 (174)
Q Consensus 108 l~~L~~Qre~L~~~~~~~~~i~~~l~ 133 (174)
...|..|.++|.....++.+|++-|.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 55688888888888888888877654
No 243
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=25.65 E-value=3.4e+02 Score=21.53 Aligned_cols=23 Identities=9% Similarity=0.442 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030656 151 WIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|++..+-+++++++.+|.|.||.
T Consensus 201 Wv~l~iG~iIi~tLtYvGwRKYr 223 (232)
T PF09577_consen 201 WVMLSIGGIIIATLTYVGWRKYR 223 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556667788899998873
No 244
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=25.65 E-value=23 Score=25.52 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHH
Q 030656 96 TMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKV 138 (174)
Q Consensus 96 ~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~l 138 (174)
.+.++.+....+..+|..-.+.+..+...+.++...+..++..
T Consensus 11 ~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~ 53 (138)
T PF06009_consen 11 TAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKA 53 (138)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555444333333333333
No 245
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.62 E-value=1.6e+02 Score=21.81 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
.+-.+|.||+ .+++++=.++.++.+.++|+
T Consensus 56 ~Vs~RM~rRm----~~~~GiP~~lG~~~f~~~y~ 85 (153)
T PF11947_consen 56 VVSNRMLRRM----AVFVGIPTALGVAVFVVFYY 85 (153)
T ss_pred HHHHHHHHHH----HHHhchHHHHHHHHHHHHHH
Confidence 3444444443 45666666666666555554
No 246
>PHA00646 hypothetical protein
Probab=25.40 E-value=1.4e+02 Score=18.55 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~ 170 (174)
.++.++=++.+.++++.+|.
T Consensus 37 ~~MVgIWlvI~Fl~Wf~i~m 56 (65)
T PHA00646 37 TLMVGIWLVILFLTWFSLWM 56 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 247
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=24.91 E-value=1.1e+02 Score=20.91 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 145 RMSRNKWIIGTVVAVLVIAI 164 (174)
Q Consensus 145 r~~~dk~il~~ii~~l~~~i 164 (174)
...+|-.|+++.+++++++.
T Consensus 47 h~WRN~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 47 HRWRNFGILIAFWIFFIVLT 66 (103)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 34566666655444443333
No 248
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=24.87 E-value=1.2e+02 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 151 WIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
++..++|.+.+.+.+++++++.++
T Consensus 77 vLTaIVIg~Av~a~~lvl~~r~~~ 100 (117)
T PRK12659 77 ILTAIVIGFGVQAFAIVLIKRAYQ 100 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444567777777777787777653
No 249
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=24.85 E-value=2e+02 Score=23.55 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
...+.+--.+..+.|..+..|....+.|..+|+.+..++++....
T Consensus 156 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~~ 200 (311)
T PRK09545 156 ATAVAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQIGNQLAP 200 (311)
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666677888889999999999999999999999876544
No 250
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=24.81 E-value=5e+02 Score=23.16 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=19.1
Q ss_pred HhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 76 LMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSS 113 (174)
Q Consensus 76 ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~ 113 (174)
+.+....+........-+.+...+|++-..++++.+.+
T Consensus 115 ~~q~~~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~ 152 (526)
T KOG4433|consen 115 LLQATYSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLE 152 (526)
T ss_pred HHHHHHhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34334444444444445555555555555555555554
No 251
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.78 E-value=96 Score=25.61 Aligned_cols=6 Identities=50% Similarity=0.601 Sum_probs=2.2
Q ss_pred hhhHHH
Q 030656 129 DDNVSK 134 (174)
Q Consensus 129 ~~~l~~ 134 (174)
|.++..
T Consensus 252 DyNvEq 257 (305)
T KOG0809|consen 252 DYNVEQ 257 (305)
T ss_pred ecchhh
Confidence 333333
No 252
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=24.68 E-value=97 Score=24.46 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v 167 (174)
|+|+++++.+++++++.+
T Consensus 187 W~i~~~v~~i~~i~vv~i 204 (226)
T PHA02662 187 WTLLLAVAAVTVLGVVAV 204 (226)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 344444443555555433
No 253
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=24.61 E-value=1.6e+02 Score=23.20 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 153 IGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~~k 171 (174)
+++++++++++++.+++.|
T Consensus 195 ~~vl~fL~il~~l~y~~kk 213 (219)
T PF02167_consen 195 LKVLGFLLILTVLAYLLKK 213 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443
No 254
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=24.39 E-value=1.6e+02 Score=27.25 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 1 MFWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 1 ~~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
+|..|++++.|.+.--...+..+..--.+|..+++.|+.+++++..+
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDE 48 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDE 48 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46788888888877666666666666777777888888777776654
No 255
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=24.37 E-value=90 Score=20.32 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 24 LAKLREYKSDLNNLKSEVKRL 44 (174)
Q Consensus 24 ~~~~~~~~~~l~~l~~~~~~~ 44 (174)
..+++.|..+++.++..++..
T Consensus 45 ~~eL~~y~~~v~~y~~~l~~~ 65 (76)
T PF06394_consen 45 QQELKTYQKKVAAYKEQLQQQ 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888777543
No 256
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.31 E-value=2.9e+02 Score=24.83 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 030656 135 SKKVLTAMSRRMS 147 (174)
Q Consensus 135 s~~ll~~i~rr~~ 147 (174)
.-..++.+..+..
T Consensus 465 ~~~~Lk~s~pKan 477 (538)
T PF05781_consen 465 WASYLKTSFPKAN 477 (538)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555555555
No 257
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=3.2e+02 Score=20.70 Aligned_cols=50 Identities=20% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 106 SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGT 155 (174)
Q Consensus 106 ~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ 155 (174)
.+++-++.|+..+++....-..+.+-...+.+.+..+++|-..++..+.-
T Consensus 32 tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~e 81 (184)
T KOG3443|consen 32 TVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLTE 81 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888888888888888888888888887765544
No 258
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=24.13 E-value=1.1e+02 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=8.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHh
Q 030656 152 IIGTVVA-VLVIAIILILYFKL 172 (174)
Q Consensus 152 il~~ii~-~l~~~i~~v~~~k~ 172 (174)
-+.++++ ++++.+.+|-.+|+
T Consensus 30 ~faFV~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFRI 51 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 3444333 33334444444444
No 259
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=24.11 E-value=1e+02 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030656 151 WIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
++.++++++++++++|++|.+++
T Consensus 440 ~~~~~~~~l~~l~l~~~v~rp~~ 462 (542)
T PRK06007 440 LIKLAAGALLILILIFFVLRPRL 462 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666554
No 260
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=23.84 E-value=1.3e+02 Score=19.19 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 149 NKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 149 dk~il~~ii~~l~~~i~~v~~ 169 (174)
+|+..++.++++++++++.++
T Consensus 53 ~k~T~il~~~F~i~~l~l~~~ 73 (76)
T PRK06870 53 SRLTAVLAVLFFVLSLALGYL 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666656555544
No 261
>PTZ00087 thrombosponding-related protein; Provisional
Probab=23.82 E-value=67 Score=26.28 Aligned_cols=18 Identities=22% Similarity=0.574 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILYFK 171 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k 171 (174)
-+|+++|+++|++-+|||
T Consensus 304 piv~vi~v~~ily~ify~ 321 (340)
T PTZ00087 304 PIVLIICVMGILYHIFYK 321 (340)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 345555555555555554
No 262
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.81 E-value=5.4e+02 Score=23.12 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030656 5 IRKMDLEARSLQP--NVKAVLLAKLREYKSDLNNLKSEVKRLVSGN 48 (174)
Q Consensus 5 i~qme~E~~~~~~--~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 48 (174)
-+.|+.|+..-+. .....+...+...+.....+..++.+++.++
T Consensus 291 Yd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 291 YDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666655443 2244555666666666666777776666654
No 263
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=23.72 E-value=2e+02 Score=20.18 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
..|.+++++.++.++++.+--|.-+|
T Consensus 90 ~~~~~lwi~t~~vl~~l~~py~~p~f 115 (116)
T PF02411_consen 90 QTKILLWIVTVLVLLLLAFPYYAPLF 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888777777777776665554
No 264
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.72 E-value=2.1e+02 Score=22.67 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..+.|..+..|....+.|..+|+.+.+.+++....
T Consensus 107 ~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~ 150 (264)
T cd01020 107 VANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAK 150 (264)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666788888999999999999999999999876543
No 265
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.67 E-value=1.3e+02 Score=18.33 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 22 VLLAKLREYKSDLNNLKSEVKR 43 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~ 43 (174)
.++.++++++.++++++++..+
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666677666666644
No 266
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.17 E-value=1.4e+02 Score=20.88 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 030656 152 IIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+..++|.+.+.+++++++++.++
T Consensus 75 LTaIVIg~av~a~lL~l~~r~~~ 97 (114)
T PRK12660 75 LTAIVIGFGMTAFLLVLVYRTYK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667777777777777653
No 267
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.85 E-value=2.1e+02 Score=23.08 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
..+.+--.+..+.|..+..|....+.|..+|+++.+++++.-.
T Consensus 129 ~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 171 (287)
T cd01137 129 YVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAKFA 171 (287)
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556678888899999999999999999998876443
No 268
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.84 E-value=2e+02 Score=17.89 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=26.2
Q ss_pred HHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 6 RKMDLEARSL-QPNVKAVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 6 ~qme~E~~~~-~~~~r~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
+.+-.-++.. +|..+..+..++.+|-.....++..+.
T Consensus 34 e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~ 71 (75)
T cd02656 34 DYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLK 71 (75)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333 456788999999999999998887763
No 269
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=22.80 E-value=1.2e+02 Score=23.25 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILI 167 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v 167 (174)
+-+++++++++++++++
T Consensus 185 lgiG~v~I~~l~~~~~~ 201 (209)
T PF11353_consen 185 LGIGTVLIVLLILLGFL 201 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333433333333333
No 270
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=22.65 E-value=1.6e+02 Score=26.39 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 101 EELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFK 171 (174)
Q Consensus 101 e~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k 171 (174)
.+...+++.-|.+..+ +-.++.|-... .-+. +..+......-+++.++++.++++++++++|++
T Consensus 483 ~df~lN~vd~L~~~~~-li~IR~k~~~~-r~l~-----~~~~~~~~~~~~~~~i~~pp~~~l~~G~~~~~~ 546 (552)
T TIGR03521 483 KEFLLNAVNYLLDDTG-LINIRSKEITL-PPLD-----KQKIAEDRTTWQLINIGLPILLLLLFGLSFTYI 546 (552)
T ss_pred HHHHHHHHHHhcCCch-hhhccccCccc-CCCC-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777544 35555443221 1111 111122334455666666667777777777754
No 271
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.61 E-value=2.2e+02 Score=22.84 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
..++.+.-.+..+.|..+..|....+.|..+|+.+.+.+++.-.
T Consensus 112 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~l~ 155 (276)
T cd01016 112 YAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIA 155 (276)
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677788888889999999999999999998876543
No 272
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=22.59 E-value=1.4e+02 Score=15.94 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030656 151 WIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~ 172 (174)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~~L~~a~~~t~~lfigL 25 (31)
T CHL00106 4 ITSYFGFLLAALTITSGLFIGL 25 (31)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666543
No 273
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.54 E-value=1.7e+02 Score=18.39 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.2
Q ss_pred HHHHHH
Q 030656 154 GTVVAV 159 (174)
Q Consensus 154 ~~ii~~ 159 (174)
++++++
T Consensus 6 ali~G~ 11 (64)
T PF03672_consen 6 ALIVGA 11 (64)
T ss_pred HHHHHH
Confidence 333333
No 274
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=22.39 E-value=2.4e+02 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
.++.+.-.+..+.|..+..|....+.|..+|+.+.+.+++....
T Consensus 125 ~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 168 (282)
T cd01017 125 QVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQEYRAKLAK 168 (282)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666667888888999999999999999999999875543
No 275
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=22.38 E-value=2.1e+02 Score=25.35 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
...+.+.-.+..+.|+.+..|....+.|..+|+++.+++++.-.
T Consensus 322 ~~a~~Ia~~LselDP~na~~Y~~Na~ay~~eL~~Ld~~~~~~la 365 (479)
T TIGR03772 322 AYVEVIRDKLIEVDPRGAQAYRSNASAYIHRLERLDTYVRRTIA 365 (479)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666788888999999999999999999998876544
No 276
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.35 E-value=2e+02 Score=17.54 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=16.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 6 RKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRL 44 (174)
Q Consensus 6 ~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~ 44 (174)
+.+|.++..+... =..++....+.+..++.++..++++
T Consensus 3 ~elEn~~~~~~~~-i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 3 DELENELPRIESS-INTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 2234444444455555555544443
No 277
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=22.31 E-value=98 Score=24.31 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIIL 166 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~ 166 (174)
|++++.++|++++++|
T Consensus 133 ClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 278
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=22.20 E-value=9.6e+02 Score=25.49 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=52.0
Q ss_pred HHHHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656 73 RSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140 (174)
Q Consensus 73 r~~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~ 140 (174)
+.....-.+.+++.+..+..-.+.+.|+|+.+...+..++.-.--+..+..+++...+++..-+...+
T Consensus 1849 ~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r 1916 (1930)
T KOG0161|consen 1849 KKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSKLR 1916 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667778888899999999999999999999888888888888887777777665554443
No 279
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.17 E-value=7.5e+02 Score=24.21 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=25.7
Q ss_pred cccHHHHHHHhhhhHHhhchhHHHHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 030656 67 TASADQRSRLMMSTERVNQSTDRIKDSR--------RTMLETEELGVSILQDLSSQRQSLLHAH 122 (174)
Q Consensus 67 ~~~~~~r~~ll~~~~~l~~~~~~L~~s~--------r~~~ete~~g~~~l~~L~~Qre~L~~~~ 122 (174)
.++.-+-.++-+.+.+|..+--+|.+.. ++..|.| .-..=+++|.+|+|.|.+--
T Consensus 364 ~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE-~k~sE~~eL~r~kE~Lsr~~ 426 (1243)
T KOG0971|consen 364 AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELE-KKNSELEELRRQKERLSREL 426 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Confidence 3344455555555666665555554422 1222222 22233455666666655443
No 280
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=22.13 E-value=1.8e+02 Score=17.12 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSD 33 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~ 33 (174)
..+.+-..++++|.++|..|..+.+.-+..
T Consensus 31 i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~ 60 (66)
T cd01390 31 VTKILGEKWKELSEEEKKKYEEKAEKDKER 60 (66)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345566677888888888887776654433
No 281
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=21.97 E-value=94 Score=27.95 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 030656 151 WIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
++..++++++++++++++|++++
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r~~i 466 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVRPVI 466 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555566666654
No 282
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=21.70 E-value=2e+02 Score=17.50 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
..|.++.-+.+.++++..++.+|.
T Consensus 24 ~~D~~Ly~~Tm~L~~~gt~~~l~~ 47 (56)
T PF02238_consen 24 YMDDILYRVTMPLTVAGTSYCLYG 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666654
No 283
>COG4499 Predicted membrane protein [Function unknown]
Probab=21.49 E-value=2e+02 Score=24.89 Aligned_cols=28 Identities=11% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 146 MSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 146 ~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
..+..+.-|++|++.++++.+++|+-|+
T Consensus 214 K~k~~ifk~~giGliillvl~li~~~Y~ 241 (434)
T COG4499 214 KKKYTIFKYFGIGLIILLVLLLIYFTYY 241 (434)
T ss_pred cccceehhhHHHhHHHHHHHHHHHHHHH
Confidence 3445577899999999999999998764
No 284
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.29 E-value=2.2e+02 Score=24.23 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 142 MSRRMSRNKWIIGTVVAV 159 (174)
Q Consensus 142 i~rr~~~dk~il~~ii~~ 159 (174)
+-+-.+..|+.+++++++
T Consensus 32 ll~~L~r~k~~Il~~~~~ 49 (377)
T PRK10381 32 LISVLWKAKKTIIAITFA 49 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555554443333
No 285
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=21.17 E-value=4.8e+02 Score=21.61 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030656 4 QIRKMDLEARSLQP----NVKAVLLAKLREYKSDLNNLKSEVKRLVSGN 48 (174)
Q Consensus 4 ~i~qme~E~~~~~~----~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 48 (174)
.|++..-....+.+ ....+....+...+.++++++++++.++...
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666554 3355677778888888888888888776554
No 286
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=21.06 E-value=1.8e+02 Score=17.13 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILIL 168 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~ 168 (174)
.+|++.+++.++.+.++
T Consensus 4 ~~y~~~~~~~l~~~~il 20 (54)
T PF07664_consen 4 SLYLLGILVALLVGLIL 20 (54)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34554444444444443
No 287
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=21.04 E-value=1.5e+02 Score=15.79 Aligned_cols=11 Identities=36% Similarity=0.727 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 030656 161 VIAIILILYFK 171 (174)
Q Consensus 161 ~~~i~~v~~~k 171 (174)
-.++.+++|.|
T Consensus 18 Pt~FLiilyvq 28 (31)
T PF05151_consen 18 PTAFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhheEee
Confidence 34455555654
No 288
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=20.97 E-value=3.9e+02 Score=20.54 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhh
Q 030656 90 IKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHG 127 (174)
Q Consensus 90 L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~ 127 (174)
..+=.+-.+..++.=...+.+-..|.+.-...-.++++
T Consensus 103 w~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~ 140 (204)
T PF00517_consen 103 WQQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDS 140 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcH
Confidence 33344445555555556666667777666665555555
No 289
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=20.96 E-value=2.8e+02 Score=18.82 Aligned_cols=39 Identities=31% Similarity=0.272 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 135 SKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 135 s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
...-+++|..=..+||--+-++-++...+-++.+.+++|
T Consensus 54 ~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~ 92 (100)
T PF06363_consen 54 VKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIF 92 (100)
T ss_pred HHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777755555444444433344444444
No 290
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=20.96 E-value=1.8e+02 Score=16.48 Aligned_cols=19 Identities=26% Similarity=0.794 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~ 170 (174)
+...+..+.++.++-++||
T Consensus 12 lVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 12 LVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3333444444444444443
No 291
>PF14182 YgaB: YgaB-like protein
Probab=20.96 E-value=2.6e+02 Score=18.36 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 5 IRKMDLEARSLQP-NVKAVLLAKLREYKSDLNNLKSEVKR 43 (174)
Q Consensus 5 i~qme~E~~~~~~-~~r~~~~~~~~~~~~~l~~l~~~~~~ 43 (174)
+++++.|...+.. ..=..+...+.+.+.+|+.+.+-|.+
T Consensus 26 CqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 26 CQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666543 22334566677777777777766654
No 292
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=20.93 E-value=1.4e+02 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 143 SRRMSRNKWIIGTVVAVLVIAI 164 (174)
Q Consensus 143 ~rr~~~dk~il~~ii~~l~~~i 164 (174)
.-=..++|++-|+.+++++..+
T Consensus 45 ~gl~mr~K~~aW~al~~s~~S~ 66 (103)
T PF03669_consen 45 AGLMMRNKWCAWAALFFSCQSF 66 (103)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3334578999999888876544
No 293
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.80 E-value=4.1e+02 Score=20.68 Aligned_cols=20 Identities=5% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHHHHHHHHhc
Q 030656 105 VSILQDLSSQRQSLLHAHNT 124 (174)
Q Consensus 105 ~~~l~~L~~Qre~L~~~~~~ 124 (174)
..|+..|..=...|+.++..
T Consensus 101 ~~vv~amk~g~kaLK~~~k~ 120 (211)
T PTZ00464 101 KVQVDAMKQAAKTLKKQFKK 120 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555544
No 294
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.77 E-value=1e+02 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHhcHhhh
Q 030656 106 SILQDLSSQRQSLLHAHNTLHGV 128 (174)
Q Consensus 106 ~~l~~L~~Qre~L~~~~~~~~~i 128 (174)
.+-.+|.+-+..|......+..+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555444443
No 295
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=20.60 E-value=92 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.531 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 030656 152 IIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|+.+++++++..+++++ ++|.
T Consensus 106 il~il~~i~is~~~~~~-yr~~ 126 (139)
T PHA03099 106 IVLVLVGIIITCCLLSV-YRFT 126 (139)
T ss_pred HHHHHHHHHHHHHHHhh-heee
Confidence 34444444443443333 3454
No 296
>PF03840 SecG: Preprotein translocase SecG subunit; InterPro: IPR004692 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. SecG has two transmembrane domains, both of which contribute to the recognition of preprotein signal sequences by the translocation complex []. The protein also undergoes membrane topology inversion when coupled to the SecA cycle []. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0009306 protein secretion, 0016021 integral to membrane; PDB: 3DL8_F 3DIN_H.
Probab=20.51 E-value=1.2e+02 Score=19.19 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~ 168 (174)
-+|+..++.++++++++++.+
T Consensus 51 L~k~T~il~~lF~v~~l~l~~ 71 (74)
T PF03840_consen 51 LTKITWILAILFFVLALILAI 71 (74)
T ss_dssp TTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555543
No 297
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.38 E-value=2.7e+02 Score=18.31 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=17.7
Q ss_pred HHHHHHHhcHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 030656 116 QSLLHAHNTLHGVDDNVS-KSKKVLTAMSRRMSRNKWIIG 154 (174)
Q Consensus 116 e~L~~~~~~~~~i~~~l~-~s~~ll~~i~rr~~~dk~il~ 154 (174)
+.+..++.++.+....+. .++........-+..+-|--.
T Consensus 38 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 38 EALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 344555555555554443 334444444444444444333
No 298
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.36 E-value=6.1e+02 Score=22.49 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030656 23 LLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 23 ~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+-.++++.+.++..+..+=++++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444454555444444444433
No 299
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=20.32 E-value=1.5e+02 Score=22.57 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~ 169 (174)
+++.+++++++++++++.+|
T Consensus 38 ~ll~~~g~vL~l~i~Y~~iW 57 (178)
T PRK09731 38 GMLLAAVVFLFSVGYYVLIW 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554
No 300
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.16 E-value=82 Score=17.73 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~ 170 (174)
.-+.|+++++++=.++.++|+
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Yl 41 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILYL 41 (46)
T ss_pred hhhHHHHHHHHHHHHHHhheE
Confidence 445677777777788888875
No 301
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=20.12 E-value=84 Score=27.21 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~ 169 (174)
.+|++||+++++-+++++++-|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 6789999998888877777765
No 302
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=20.09 E-value=3.1e+02 Score=18.96 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 137 KVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 137 ~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
--+..+........++-+.+++++++++++.++.
T Consensus 45 ~~i~~ls~~~~~~s~lpy~~l~~~ll~i~l~~~~ 78 (116)
T PF11877_consen 45 FSIHLLSNNIFGHSFLPYLLLVLLLLAIILAIYQ 78 (116)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777777888888888888888777664
No 303
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=20.06 E-value=2.3e+02 Score=17.60 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~ 169 (174)
.++.++=++++..+++.+|
T Consensus 39 t~MiGiWiVilFLtWf~lw 57 (67)
T PF10854_consen 39 TIMIGIWIVILFLTWFLLW 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454544444444444444
Done!