Query 030656
Match_columns 174
No_of_seqs 124 out of 711
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.8 9.3E-21 3.2E-25 125.2 7.8 80 71-150 2-81 (81)
2 1gl2_C VTI1B, vesicle transpor 99.7 3.1E-16 1.1E-20 99.3 7.2 64 81-144 2-65 (65)
3 1n7s_C SNAP-25A; neuronal snar 99.4 2.4E-12 8.3E-17 84.2 9.9 68 77-144 12-79 (79)
4 1nhl_A Synaptosomal-associated 99.1 1.5E-10 5.1E-15 70.3 6.6 52 91-142 3-54 (54)
5 1vcs_A Vesicle transport throu 98.9 3.3E-09 1.1E-13 72.6 6.1 46 2-47 51-96 (102)
6 2qyw_A Vesicle transport throu 98.7 1.2E-08 4.1E-13 69.8 5.5 41 2-42 62-102 (102)
7 3onj_A T-snare VTI1; helix, HA 98.7 1.1E-08 3.9E-13 69.3 5.2 45 2-46 47-94 (97)
8 3b5n_C Protein transport prote 98.7 1E-07 3.6E-12 60.5 8.8 61 84-144 8-68 (70)
9 1l4a_C S-SNAP25 fusion protein 98.6 6.2E-08 2.1E-12 63.6 4.6 63 81-143 20-82 (83)
10 3hd7_B Syntaxin-1A; membrane p 98.1 0.00024 8.2E-09 48.8 13.4 81 87-167 20-103 (109)
11 3hd7_A Vesicle-associated memb 98.0 0.00036 1.2E-08 46.4 13.1 85 86-170 3-87 (91)
12 2kog_A Vesicle-associated memb 96.9 0.0003 1E-08 49.1 1.9 85 86-170 31-115 (119)
13 3hd7_A Vesicle-associated memb 96.4 0.06 2E-06 35.5 10.3 82 82-169 6-90 (91)
14 2nps_D Syntaxin-6; vesicle fus 96.4 0.025 8.5E-07 36.5 8.0 66 81-146 12-77 (82)
15 1gl2_D Syntaxin 8, vesicle tra 96.2 0.026 9.1E-07 34.7 7.2 61 83-143 4-64 (65)
16 3b5n_D Protein transport prote 95.9 0.048 1.6E-06 33.6 7.1 55 87-141 9-63 (64)
17 1sfc_D Protein (SNAP-25B), pro 95.7 0.059 2E-06 35.1 7.4 62 83-144 24-85 (87)
18 1n7s_D SNAP-25A; neuronal snar 95.4 0.12 4.3E-06 31.6 7.9 57 86-142 8-64 (66)
19 1l4a_D S-SNAP25 fusion protein 94.7 0.091 3.1E-06 34.3 6.0 58 86-143 28-85 (87)
20 1jth_B Syntaxin 1A; coiled-coi 82.5 6.8 0.00023 24.4 8.6 57 88-144 10-66 (77)
21 2kog_A Vesicle-associated memb 80.1 2.9 0.0001 28.6 4.8 82 81-168 33-117 (119)
22 3b5n_A Synaptobrevin homolog 1 74.7 11 0.00037 22.3 8.8 59 88-146 2-60 (61)
23 2nps_B Syntaxin 13, vesicle-as 71.9 14 0.00049 22.5 8.6 57 89-145 7-63 (71)
24 1sfc_A VAMP 2, protein (synapt 71.8 18 0.00061 23.6 8.7 64 86-149 28-91 (96)
25 1fjk_A Cardiac phospholamban; 70.9 9.8 0.00033 21.3 4.4 26 143-168 24-49 (52)
26 1dn1_B Syntaxin 1A, syntaxin b 69.3 8.9 0.00031 29.7 5.6 54 87-140 199-252 (267)
27 1gl2_B Syntaxin 7; membrane pr 69.3 16 0.00053 21.9 8.3 53 89-141 10-62 (65)
28 3b5n_B Protein SSO1; snare com 68.5 17 0.00058 22.0 8.6 56 88-143 10-65 (69)
29 1n7s_A Vesicle-associated memb 67.7 17 0.00057 21.6 8.9 58 88-145 4-61 (63)
30 1n7s_B Syntaxin 1A; neuronal s 67.5 18 0.0006 21.8 8.6 54 88-141 12-65 (68)
31 2nps_A VAMP-4, vesicle-associa 63.6 23 0.00078 21.7 5.8 60 89-148 9-68 (74)
32 1l4a_A Synaptobrevin; snare, s 61.0 19 0.00064 22.6 5.0 60 87-146 14-73 (80)
33 2knc_B Integrin beta-3; transm 59.3 11 0.00038 23.8 3.6 17 156-172 18-34 (79)
34 2rpa_A Katanin P60 ATPase-cont 58.2 31 0.0011 21.6 5.6 36 4-39 38-74 (78)
35 3vkg_A Dynein heavy chain, cyt 53.3 2.3E+02 0.0078 30.0 17.5 102 72-173 2012-2120(3245)
36 2k9j_B Integrin beta-3; transm 51.8 22 0.00074 19.6 3.6 17 156-172 17-33 (43)
37 3na7_A HP0958; flagellar bioge 51.6 77 0.0026 24.0 13.1 13 30-42 51-63 (256)
38 1v64_A Nucleolar transcription 50.8 50 0.0017 21.7 6.5 54 4-61 44-97 (108)
39 1sfc_B Protein (syntaxin 1A), 50.6 43 0.0015 20.9 8.8 56 88-143 21-76 (83)
40 2ke4_A CDC42-interacting prote 50.5 50 0.0017 21.6 7.5 28 13-40 9-37 (98)
41 1m56_D Cytochrome C oxidase; m 50.3 21 0.00071 20.6 3.4 20 150-169 30-49 (51)
42 1pi7_A VPU protein, U ORF prot 50.2 25 0.00086 18.7 3.5 8 165-172 25-32 (36)
43 2l8s_A Integrin alpha-1; trans 50.0 25 0.00084 20.5 3.7 15 155-169 16-31 (54)
44 2knc_A Integrin alpha-IIB; tra 49.8 25 0.00084 20.5 3.7 10 156-165 20-29 (54)
45 1v54_D Cytochrome C oxidase su 48.5 19 0.00066 25.5 3.7 24 150-173 79-102 (147)
46 1qle_D Cytochrome AA3, ccytoch 48.3 19 0.00064 20.0 2.9 17 151-167 23-39 (43)
47 3vou_A ION transport 2 domain 47.9 49 0.0017 22.8 5.9 39 132-170 8-46 (148)
48 1q90_R Cytochrome B6-F complex 46.7 39 0.0013 19.2 4.9 21 141-161 8-28 (49)
49 1jdm_A Sarcolipin; helix, memb 45.2 22 0.00076 17.9 2.6 14 154-167 12-25 (31)
50 2l6w_A Beta-type platelet-deri 50.5 4.7 0.00016 21.9 0.0 15 156-170 19-33 (39)
51 3arc_L Photosystem II reaction 44.2 33 0.0011 18.1 3.3 19 152-170 17-35 (37)
52 2k1a_A Integrin alpha-IIB; sin 43.2 36 0.0012 18.7 3.6 18 154-171 16-33 (42)
53 2y69_D Cytochrome C oxidase su 41.6 28 0.00095 25.2 3.7 24 150-173 101-124 (169)
54 3ljc_A ATP-dependent protease 41.5 1.1E+02 0.0037 22.9 7.5 59 69-127 183-250 (252)
55 2lk9_A Bone marrow stromal ant 41.4 30 0.001 18.1 2.8 9 150-158 4-12 (35)
56 1svf_B Protein (fusion glycopr 40.8 21 0.00071 19.2 2.3 24 118-141 14-37 (38)
57 3c98_B Syntaxin-1A; protein co 39.7 16 0.00056 27.4 2.5 60 81-140 205-264 (279)
58 2wwb_C SEC61BETA, protein tran 39.6 4.2 0.00014 26.8 -0.8 25 150-174 71-95 (96)
59 3oa7_A Head morphogenesis prot 38.1 56 0.0019 24.3 4.9 44 3-47 30-73 (206)
60 1yke_B RNA polymerase II holoe 37.3 1E+02 0.0034 21.7 6.1 41 5-45 70-112 (151)
61 1ykh_B RNA polymerase II holoe 36.9 1E+02 0.0034 21.1 6.1 41 5-45 70-112 (132)
62 3vmt_A Monofunctional glycosyl 35.8 14 0.00046 28.9 1.4 31 140-170 25-55 (263)
63 3arc_I Photosystem II reaction 35.7 38 0.0013 18.1 2.7 16 148-163 3-18 (38)
64 2v66_B Nuclear distribution pr 35.3 1E+02 0.0034 20.7 7.2 24 22-45 7-30 (111)
65 2q67_A Potassium channel prote 34.4 98 0.0033 20.3 5.7 37 134-170 7-43 (114)
66 1afo_A Glycophorin A; integral 34.3 57 0.002 17.6 3.5 17 153-169 16-32 (40)
67 1yod_A Water-solublized phosph 34.2 47 0.0016 16.6 4.5 24 144-167 4-27 (30)
68 2jo1_A Phospholemman; FXYD1, N 34.2 48 0.0016 20.4 3.4 15 157-171 25-39 (72)
69 3s8f_C Cytochrome C oxidase po 33.3 55 0.0019 17.1 4.0 22 151-172 9-30 (34)
70 2klu_A T-cell surface glycopro 33.1 59 0.002 19.8 3.6 17 152-168 13-29 (70)
71 2dfs_A Myosin-5A; myosin-V, in 32.7 3.1E+02 0.011 25.6 11.0 45 83-127 993-1037(1080)
72 2xhe_B Syntaxin1; exocytosis, 32.6 73 0.0025 24.4 5.2 56 87-142 216-271 (279)
73 1gl2_A Endobrevin; membrane pr 32.4 80 0.0027 18.7 6.8 44 88-131 9-52 (65)
74 2v71_A Nuclear distribution pr 30.9 1.6E+02 0.0054 21.6 12.7 116 20-139 12-128 (189)
75 3arc_X Photosystem II PSBX pro 30.7 68 0.0023 17.3 3.6 17 154-170 15-31 (39)
76 3mfq_A TROA, high-affinity zin 29.6 1.3E+02 0.0044 23.1 6.2 43 4-46 115-157 (282)
77 2prs_A High-affinity zinc upta 28.8 1.1E+02 0.0037 23.4 5.7 44 4-47 128-171 (284)
78 3cx3_A Lipoprotein; zinc-bindi 28.1 98 0.0034 23.7 5.3 44 4-47 131-174 (284)
79 1toa_A Tromp-1, protein (perip 27.9 99 0.0034 24.2 5.3 44 4-47 149-192 (313)
80 2o1e_A YCDH; alpha-beta protei 27.9 99 0.0034 24.2 5.3 44 4-47 144-187 (312)
81 1pq4_A Periplasmic binding pro 27.9 1E+02 0.0035 23.8 5.3 44 4-47 144-187 (291)
82 3gi1_A LBP, laminin-binding pr 27.1 1.2E+02 0.0041 23.3 5.6 44 4-47 133-176 (286)
83 3lay_A Zinc resistance-associa 27.1 1.8E+02 0.006 21.0 7.8 34 12-45 65-98 (175)
84 2r2v_A GCN4 leucine zipper; co 26.7 75 0.0026 16.5 4.6 24 22-45 5-28 (34)
85 1jcd_A Major outer membrane li 26.6 96 0.0033 17.8 3.7 22 22-43 15-36 (52)
86 2ww9_C Protein transport prote 26.5 39 0.0013 21.7 2.1 26 148-173 60-85 (87)
87 2jp3_A FXYD domain-containing 26.5 46 0.0016 20.2 2.3 10 160-169 29-38 (67)
88 1q90_L Cytochrome B6F complex 26.1 75 0.0026 16.3 3.7 22 151-172 4-25 (32)
89 1xvl_A Mn transporter, MNTC pr 25.3 1.2E+02 0.004 23.9 5.3 43 4-46 156-198 (321)
90 3hh8_A Metal ABC transporter s 25.1 1.1E+02 0.0039 23.6 5.2 42 4-45 135-176 (294)
91 3ghg_A Fibrinogen alpha chain; 24.8 3.3E+02 0.011 23.3 11.2 25 21-45 60-84 (562)
92 3ujp_A Mn transporter subunit; 24.5 1.3E+02 0.0043 23.6 5.3 43 4-46 142-184 (307)
93 2w1k_A Putative sortase; pilus 24.4 16 0.00055 28.2 0.0 31 4-34 5-35 (252)
94 3bz1_X Photosystem II PSBX pro 24.1 87 0.003 17.8 3.1 15 155-169 26-40 (50)
95 1deq_A Fibrinogen (alpha chain 23.8 3E+02 0.01 22.5 11.0 22 21-42 63-84 (390)
96 3tul_A Cell invasion protein S 23.7 1.5E+02 0.0052 20.8 4.9 41 5-45 85-127 (158)
97 1g73_A SMAC/diablo, second mit 23.5 2E+02 0.007 20.4 9.1 39 11-49 65-103 (162)
98 2rp4_A Transcription factor P5 23.4 49 0.0017 20.4 2.1 39 4-42 34-73 (76)
99 2y69_J Cytochrome C oxidase po 23.4 1.2E+02 0.0041 19.0 4.0 24 147-170 47-70 (80)
100 1urq_A M-tomosyn isoform; tran 23.2 1.2E+02 0.0043 17.9 7.8 55 89-143 5-59 (63)
101 2yiu_B Cytochrome C1, heme pro 22.2 1.2E+02 0.0039 23.6 4.5 16 155-170 234-249 (263)
102 3m9b_A Proteasome-associated A 21.2 1.7E+02 0.0059 22.4 5.3 42 5-47 56-97 (251)
103 1k04_A FADK 1, focal adhesion 21.0 2.3E+02 0.008 20.2 6.3 44 2-45 72-115 (162)
104 3htu_B Vacuolar protein-sortin 21.0 85 0.0029 16.8 2.5 20 109-128 12-31 (39)
105 3nmd_A CGMP dependent protein 20.9 1.4E+02 0.0047 18.4 3.8 23 23-45 45-67 (72)
106 1pp9_D Cytochrome C-1, cytochr 20.8 1.3E+02 0.0045 22.9 4.5 11 159-169 212-222 (241)
107 1v63_A Nucleolar transcription 20.7 1.7E+02 0.006 18.6 7.2 29 4-32 37-65 (101)
108 3zx6_A HAMP, methyl-accepting 20.5 3.1E+02 0.011 21.4 10.6 45 98-142 111-155 (341)
109 1oed_B Acetylcholine receptor 20.3 1.1E+02 0.0037 23.3 4.0 24 146-169 217-240 (250)
110 1v54_J Cytochrome C oxidase po 20.0 1.4E+02 0.0049 17.4 4.2 23 148-170 27-49 (59)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.83 E-value=9.3e-21 Score=125.17 Aligned_cols=80 Identities=34% Similarity=0.581 Sum_probs=76.3
Q ss_pred HHHHHHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 030656 71 DQRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNK 150 (174)
Q Consensus 71 ~~r~~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk 150 (174)
++|++|+++++++++++++|.+|.+++.|||++|.+|+++|+.|||+|.++++++++++++++.|.++|+.|.||+++||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999887
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.65 E-value=3.1e-16 Score=99.26 Aligned_cols=64 Identities=36% Similarity=0.602 Sum_probs=58.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
++|++++++|.+|.+++.|||++|.+|+.+|+.|||+|.++++++++++.++++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 5688999999999999999999999999999999999999999999999999999999999976
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.40 E-value=2.4e-12 Score=84.23 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=64.1
Q ss_pred hhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 77 MMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 77 l~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
...+...++++.++.++.+++.||+++|.+|+..|+.|||+|.+++..+++++.++++|.++|+.|.+
T Consensus 12 ~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 12 RRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 45577789999999999999999999999999999999999999999999999999999999999863
No 4
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.13 E-value=1.5e-10 Score=70.29 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 91 KDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 91 ~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
.++.+++.||+++|..|+..|..|+|+|.++...++++++++++|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 4788999999999999999999999999999999999999999999999764
No 5
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=98.88 E-value=3.3e-09 Score=72.62 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+|+||++|++++||+.|..|..|++.|+.+|+.++++|+++...
T Consensus 51 ~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 51 RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999999999988765
No 6
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=98.75 E-value=1.2e-08 Score=69.81 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
..+|+|||+|++++||+.|..|..|++.|+.+|+.++++|+
T Consensus 62 ~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 62 NETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 36899999999999999999999999999999999999873
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=98.74 E-value=1.1e-08 Score=69.29 Aligned_cols=45 Identities=31% Similarity=0.497 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q 030656 2 FWQIRKMDLEARSL--QPNVKAVLLAKLREYKSDLNN-LKSEVKRLVS 46 (174)
Q Consensus 2 ~~~i~qme~E~~~~--~~~~r~~~~~~~~~~~~~l~~-l~~~~~~~~~ 46 (174)
..+|+||++|++++ ||+.|..|+.|++.|+.+|++ ++++|+++..
T Consensus 47 ~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 47 FDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36899999999999 999999999999999999999 9999998764
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.72 E-value=1e-07 Score=60.52 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=55.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 84 NQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 84 ~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
+.+..+-.++.+++.|++++|.+|+..|..|.|+|.++...++.++.++..|.+.++.+..
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455677889999999999999999999999999999999999999999999999998864
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.57 E-value=6.2e-08 Score=63.57 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=55.9
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
..-+.+..+..++.+++.+++++|.+|+..|..|+|+|.++...+++|+.++..|.+.|+.|.
T Consensus 20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334556788889999999999999999999999999999999999999999999998887664
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.05 E-value=0.00024 Score=48.80 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA---MSRRMSRNKWIIGTVVAVLVIA 163 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~---i~rr~~~dk~il~~ii~~l~~~ 163 (174)
...+.+..+.+.|..++-.+...-...|.+.+.++..++.++..++..++.-++. ..++..+-+|++++++++++++
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i 99 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGII 99 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHH
Confidence 4456677778888999999999999999999999999999999999999988854 4444555555555444444333
Q ss_pred HHHH
Q 030656 164 IILI 167 (174)
Q Consensus 164 i~~v 167 (174)
++++
T Consensus 100 ~~~~ 103 (109)
T 3hd7_B 100 IAST 103 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.00 E-value=0.00036 Score=46.39 Aligned_cols=85 Identities=11% Similarity=0.191 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII 165 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~ 165 (174)
+.+.|...+.-++|+.++.....+.+-...|.|....++.++....-..=.+.-+.+.|+++-..+=+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888999999999999999999999999999999998888877788888888877774444444433333343
Q ss_pred HHHHH
Q 030656 166 LILYF 170 (174)
Q Consensus 166 ~v~~~ 170 (174)
++++.
T Consensus 83 ~ii~~ 87 (91)
T 3hd7_A 83 IIIIV 87 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=96.94 E-value=0.0003 Score=49.08 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAII 165 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~ 165 (174)
+.+.|...+..++|+.++.....+.+...-|.|....++..+....-..=.+--+.+.|+++-.++-+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888889999999999999999999988888888887777788888888887777666666555555555
Q ss_pred HHHHH
Q 030656 166 LILYF 170 (174)
Q Consensus 166 ~v~~~ 170 (174)
++++.
T Consensus 111 ~iIi~ 115 (119)
T 2kog_A 111 IIIIV 115 (119)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 55443
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.45 E-value=0.06 Score=35.46 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=53.6
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 82 RVNQSTDRIKDSRRTMLETEELGV---SILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVVA 158 (174)
Q Consensus 82 ~l~~~~~~L~~s~r~~~ete~~g~---~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii~ 158 (174)
.+.+....+++.+.++.+..+--. +-++.|.+..+.|........ ..|+++=+.|--+-++-++|++++++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~ 79 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICA 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666655544332 345667777777766544433 46777778888898999999888887
Q ss_pred HHHHHHHHHHH
Q 030656 159 VLVIAIILILY 169 (174)
Q Consensus 159 ~l~~~i~~v~~ 169 (174)
+++++|++.++
T Consensus 80 ~il~ii~~~~~ 90 (91)
T 3hd7_A 80 IILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 77766665543
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.025 Score=36.52 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=55.9
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
..+.++...|+.....+....++|.++-.+|..|.+.|......++.+.+.|..+++-+..+.++.
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566677888888999999999999999999999999999999999999999999999888764
No 15
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.23 E-value=0.026 Score=34.66 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=49.9
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
+.++...|+.-...+....++|.++-.++..|.+.|.....+++.+...+..+++-+..+.
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556678888888999999999999999999999999999999999999999987776654
No 16
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.048 Score=33.57 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 141 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~ 141 (174)
...|+....++.-...+|.++-.++..|.+.|.++..+++.++..+..+++-|..
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777788888999999999999999999999999999999999998876654
No 17
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.67 E-value=0.059 Score=35.14 Aligned_cols=62 Identities=6% Similarity=0.148 Sum_probs=53.7
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
..+....|+.....+....++|.++-.+|..|.+.|..+..+++.+...+..+++-++.+.+
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 33455677888888889999999999999999999999999999999999999887776543
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=95.44 E-value=0.12 Score=31.64 Aligned_cols=57 Identities=5% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
....|+.-...+....++|.++-.+|..|.+.|..+..++..+...+..+++-++.+
T Consensus 8 qD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888999999999999999999999999999999999998776654
No 19
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.72 E-value=0.091 Score=34.28 Aligned_cols=58 Identities=9% Similarity=0.204 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
....|+.....+....++|.++-.+|..|.+.|.++..+++.++..+..+++-++.+-
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777888888999999999999999999999999999999999988776653
No 20
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=82.50 E-value=6.8 Score=24.37 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSR 144 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~r 144 (174)
..+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..=.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888888888888899999999999999999999999988876555
No 21
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=80.15 E-value=2.9 Score=28.61 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVS---ILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRNKWIIGTVV 157 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~---~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~dk~il~~ii 157 (174)
+.+.+....+++.+.++.+..+--.+ -++.|.+..+.|.. +...--..|+++-+.|--+.++-++|+++++
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~------~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv 106 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMMIILGVIC 106 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS------SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666555442221 12233333332221 1122223556677777778888888888877
Q ss_pred HHHHHHHHHHH
Q 030656 158 AVLVIAIILIL 168 (174)
Q Consensus 158 ~~l~~~i~~v~ 168 (174)
++++++|++++
T Consensus 107 ~iii~iIi~~~ 117 (119)
T 2kog_A 107 AIILIIIIVYF 117 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhe
Confidence 77766666554
No 22
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=74.69 E-value=11 Score=22.34 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
+.|...+.-++|+..+.....+.+-..-|.|....++-.+....-..=.+--+.+.|++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667778888899999999999999999999888888777666555555555555443
No 23
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=71.87 E-value=14 Score=22.45 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 89 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 89 ~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
.+.+..+.+.|..++=.+...=...|.+.|.++..++..+..++..+..-|..=.+-
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777788788777888999999999999999999999999888665443
No 24
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=71.84 E-value=18 Score=23.58 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHHH
Q 030656 86 STDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSRN 149 (174)
Q Consensus 86 ~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~d 149 (174)
+.+.|...+.-++|+..+.....+.+...-|.|....++..++...-..=.+--+.+.|+++-.
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999999999998888877776666667777766543
No 25
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=70.88 E-value=9.8 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 143 SRRMSRNKWIIGTVVAVLVIAIILIL 168 (174)
Q Consensus 143 ~rr~~~dk~il~~ii~~l~~~i~~v~ 168 (174)
.|+..++-++=+..|++|++.|.+|+
T Consensus 24 arqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 24 ARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555565666666666655553
No 26
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=69.34 E-value=8.9 Score=29.70 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~ 140 (174)
...+.+..+.+.|..++=.....=...|-+.|.++..++..+..++..|..-+.
T Consensus 199 ~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~ 252 (267)
T 1dn1_B 199 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 252 (267)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666777777777777777889999999999999999988888887665
No 27
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=69.29 E-value=16 Score=21.89 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656 89 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 141 (174)
Q Consensus 89 ~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~ 141 (174)
.+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778877777778899999999999999999999999887653
No 28
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=68.49 E-value=17 Score=21.98 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
..+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..=.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888888888888889999999999999999999999998876543
No 29
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=67.68 E-value=17 Score=21.59 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRR 145 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr 145 (174)
+.|...+.-++|+..+.....+.+....|.|....++-.+.......=.+--+.+.|+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888899999999999999999888888777776655544444555444
No 30
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=67.51 E-value=18 Score=21.81 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTA 141 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~ 141 (174)
..+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888888877888899999999999999999999999887653
No 31
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=63.64 E-value=23 Score=21.75 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHH
Q 030656 89 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSR 148 (174)
Q Consensus 89 ~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~ 148 (174)
.|...+.-++|+..+.....+.+-.--|.|....++..+....-..=.+--+.+.|+++-
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww 68 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778888888888888888888888888887777766666666666666543
No 32
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=60.95 E-value=19 Score=22.55 Aligned_cols=60 Identities=7% Similarity=0.171 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRM 146 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~ 146 (174)
.+.|...+.-++|+..+.....+.+...-|.|....++..+.......=.+--+.+.|++
T Consensus 14 ~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~ 73 (80)
T 1l4a_A 14 SKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKF 73 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999999999998888877766555444445555544
No 33
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.28 E-value=11 Score=23.76 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030656 156 VVAVLVIAIILILYFKL 172 (174)
Q Consensus 156 ii~~l~~~i~~v~~~k~ 172 (174)
+.+++++.+++++.+|+
T Consensus 18 i~gilliGllllliwk~ 34 (79)
T 2knc_B 18 MGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333343
No 34
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=58.18 E-value=31 Score=21.59 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSL-QPNVKAVLLAKLREYKSDLNNLKS 39 (174)
Q Consensus 4 ~i~qme~E~~~~-~~~~r~~~~~~~~~~~~~l~~l~~ 39 (174)
.+++++..++.+ +|+.|.+|+.-.++..+|++..+.
T Consensus 38 ~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~ 74 (78)
T 2rpa_A 38 VLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKD 74 (78)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 578899999998 678899999888888777776553
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.26 E-value=2.3e+02 Score=30.01 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=69.1
Q ss_pred HHHHHhhhhHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHHHHHHH--H
Q 030656 72 QRSRLMMSTERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMSRRMSR--N 149 (174)
Q Consensus 72 ~r~~ll~~~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~rr~~~--d 149 (174)
-|+.+....+.+..+...|...+..+.+.++-=...-.++..-...-......+..+...+.+|.+++...+--..+ .
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 44555555666777777788877777777766555555665555566667788899999999999999988764322 1
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 150 -----KWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 150 -----k~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
+--+-.+++=++++-+|+.|...|
T Consensus 2092 ~~~~l~~~~~~L~GD~LLaaafisY~G~f 2120 (3245)
T 3vkg_A 2092 QSENFNTQMSTVVGDVVLASAFLAYIGFF 2120 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCC
Confidence 112234566667777777776543
No 36
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=51.77 E-value=22 Score=19.62 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030656 156 VVAVLVIAIILILYFKL 172 (174)
Q Consensus 156 ii~~l~~~i~~v~~~k~ 172 (174)
+.+++++.+++++.+|+
T Consensus 17 i~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 17 MGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334344444444444
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=51.59 E-value=77 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 030656 30 YKSDLNNLKSEVK 42 (174)
Q Consensus 30 ~~~~l~~l~~~~~ 42 (174)
.+.++.+++.+..
T Consensus 51 ~~~~l~d~~~~~~ 63 (256)
T 3na7_A 51 LEEEKLALKLQVS 63 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 38
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=50.80 E-value=50 Score=21.65 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHhhHHhhcCC
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNLNAAARDELLESG 61 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~R~~Ll~~~ 61 (174)
.-+.+-..++.+++.++..|..+....+..+..--..+..-. ...+|++|++..
T Consensus 44 isk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~----~~~~r~~~~~~~ 97 (108)
T 1v64_A 44 RMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESL----PEEEQQRVLGEE 97 (108)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CHHHHHHHHhcC
Confidence 345566788999999999999887754443333323332211 234788888653
No 39
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=50.61 E-value=43 Score=20.89 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
..+.+..+.+.|..++=.....=...|.+.|.++..++..+..++..+..-+..=.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777888888888888889999999999999999999999998776543
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.47 E-value=50 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=19.0
Q ss_pred hcCChhh-HHHHHHHHHHHHHHHHHHHHH
Q 030656 13 RSLQPNV-KAVLLAKLREYKSDLNNLKSE 40 (174)
Q Consensus 13 ~~~~~~~-r~~~~~~~~~~~~~l~~l~~~ 40 (174)
.++||++ +..+..++..+..++..-.+.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689976 556777777777766665544
No 41
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=50.33 E-value=21 Score=20.57 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030656 150 KWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~ 169 (174)
|+..|+.+++.++++++.+|
T Consensus 30 ~~~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 30 RMVTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444444443
No 42
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=50.24 E-value=25 Score=18.69 Aligned_cols=8 Identities=13% Similarity=-0.230 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 030656 165 ILILYFKL 172 (174)
Q Consensus 165 ~~v~~~k~ 172 (174)
.++-|.|+
T Consensus 25 v~ieYrk~ 32 (36)
T 1pi7_A 25 VIIEGRGG 32 (36)
T ss_pred HHHHHHHH
Confidence 33334443
No 43
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=49.99 E-value=25 Score=20.52 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH-HHHH
Q 030656 155 TVVAVLVIAII-LILY 169 (174)
Q Consensus 155 ~ii~~l~~~i~-~v~~ 169 (174)
++.++++++++ +++|
T Consensus 16 vl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 16 AFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 34444444433 3444
No 44
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.79 E-value=25 Score=20.52 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 030656 156 VVAVLVIAII 165 (174)
Q Consensus 156 ii~~l~~~i~ 165 (174)
+.++++++++
T Consensus 20 l~GLllL~li 29 (54)
T 2knc_A 20 LGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 45
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=48.47 E-value=19 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 150 KWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|-|++++++++.+.+++++|.+.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~ 102 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHY 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777788777776654
No 46
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=48.28 E-value=19 Score=19.98 Aligned_cols=17 Identities=6% Similarity=0.053 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 151 WIIGTVVAVLVIAIILI 167 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v 167 (174)
+..|+.+++.++++++.
T Consensus 23 ~~k~gt~~~~~~ll~ma 39 (43)
T 1qle_D 23 GATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 47
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=47.94 E-value=49 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 132 VSKSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 132 l~~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
+...+++++.+.+-.....+++.+++++++++++.++|.
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777765555555556666666666655554
No 48
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=46.74 E-value=39 Score=19.21 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030656 141 AMSRRMSRNKWIIGTVVAVLV 161 (174)
Q Consensus 141 ~i~rr~~~dk~il~~ii~~l~ 161 (174)
+|+||..-|++.+..+-++..
T Consensus 8 dm~RRqfln~l~~G~~a~~a~ 28 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGLPIT 28 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 489999999988855544433
No 49
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=45.17 E-value=22 Score=17.88 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILI 167 (174)
Q Consensus 154 ~~ii~~l~~~i~~v 167 (174)
+.+++++++.++++
T Consensus 12 Ft~vLI~vlLi~ll 25 (31)
T 1jdm_A 12 FTIVLITVILMWLL 25 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555443
No 50
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=50.45 E-value=4.7 Score=21.94 Aligned_cols=15 Identities=20% Similarity=0.673 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 156 VVAVLVIAIILILYF 170 (174)
Q Consensus 156 ii~~l~~~i~~v~~~ 170 (174)
+++++.+++.+++|.
T Consensus 19 vi~iisLIiLi~~w~ 33 (39)
T 2l6w_A 19 VLTIISLIILIMLWQ 33 (39)
Confidence 333444444444443
No 51
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=44.25 E-value=33 Score=18.14 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~~~ 170 (174)
+.|+..+++++++.|--|+
T Consensus 17 Ly~GLLlifvlavlFssyf 35 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4456666666666666553
No 52
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=43.18 E-value=36 Score=18.68 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILYFK 171 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~k 171 (174)
.++.+++++++++++.+|
T Consensus 16 s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444443333333
No 53
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=41.55 E-value=28 Score=25.24 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 150 KWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
|-|++++++++.+.+++++|.+.|
T Consensus 101 K~V~ggv~~~i~~s~~~f~~~r~~ 124 (169)
T 2y69_D 101 KTVVGAAMFFIGFTALLLIWEKHY 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777888777776654
No 54
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=41.54 E-value=1.1e+02 Score=22.95 Aligned_cols=59 Identities=5% Similarity=0.120 Sum_probs=43.5
Q ss_pred cHHHHHHHhhh---hHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHhcHhh
Q 030656 69 SADQRSRLMMS---TERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQ------RQSLLHAHNTLHG 127 (174)
Q Consensus 69 ~~~~r~~ll~~---~~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Q------re~L~~~~~~~~~ 127 (174)
+.+.++.+|.. .+++..-...|..-..++.=...|...+-+++..| ||+|+.++..+.+
T Consensus 183 ~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 183 KLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE 250 (252)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35677787755 45556566666666666666778888888888887 7799999888765
No 55
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=41.40 E-value=30 Score=18.07 Aligned_cols=9 Identities=22% Similarity=0.471 Sum_probs=3.1
Q ss_pred HHHHHHHHH
Q 030656 150 KWIIGTVVA 158 (174)
Q Consensus 150 k~il~~ii~ 158 (174)
|+.++..++
T Consensus 4 KL~lg~Gvl 12 (35)
T 2lk9_A 4 KLLLGIGIL 12 (35)
T ss_dssp -CHHHHHHH
T ss_pred eeeecccHH
Confidence 334444333
No 56
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=40.80 E-value=21 Score=19.19 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHhcHhhhhhhHHHHHHHHHH
Q 030656 118 LLHAHNTLHGVDDNVSKSKKVLTA 141 (174)
Q Consensus 118 L~~~~~~~~~i~~~l~~s~~ll~~ 141 (174)
|..+...+.+...-+..|+..+..
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~~ 37 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLSA 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566666666666666666554
No 57
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=39.71 E-value=16 Score=27.40 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHH
Q 030656 81 ERVNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLT 140 (174)
Q Consensus 81 ~~l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~ 140 (174)
..+......+......+.+..++-.++......|.+.+..+...+..+...+..+..-+.
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888888888899999999999999999999999999988877766655443
No 58
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=39.60 E-value=4.2 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 030656 150 KWIIGTVVAVLVIAIILILYFKLAK 174 (174)
Q Consensus 150 k~il~~ii~~l~~~i~~v~~~k~~~ 174 (174)
+.++++.+++.++.+++-+|.||.|
T Consensus 71 ~~VLv~sl~Fi~~Vi~Lhi~~K~~r 95 (96)
T 2wwb_C 71 VPVLVMSLLFIASVFMLHIWGKYTR 95 (96)
T ss_dssp CSHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred EEehhhHHHHHHHHHHHHHhhhhcc
Confidence 4566665555556666666666654
No 59
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.06 E-value=56 Score=24.26 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 3 WQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 3 ~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..++|++.|..+.-.+. ..+.......+.++++|+..++++...
T Consensus 30 ~~~~~~~a~~~s~~s~~-~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEY-NDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 45777777777764432 457777777888888888888877654
No 60
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.32 E-value=1e+02 Score=21.72 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 5 IRKMDLEARSLQPN--VKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 5 i~qme~E~~~~~~~--~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
-+|.|.-+.++|+. .-..-..++++...++.....++....
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v 112 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999973 345666788888888888888887655
No 61
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.93 E-value=1e+02 Score=21.14 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 5 IRKMDLEARSLQPN--VKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 5 i~qme~E~~~~~~~--~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
-++.|.-+.++|+. .-..-..++++...++.....++....
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v 112 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999973 345566788888888888888887654
No 62
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=35.83 E-value=14 Score=28.86 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 140 TAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 140 ~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
....++....|++.++++++++++++++.|+
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~ 55 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIGIM 55 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666555555555444443
No 63
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=35.75 E-value=38 Score=18.09 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIA 163 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~ 163 (174)
+=|+..|.++++++.+
T Consensus 3 tLKi~Vy~vV~ffvsL 18 (38)
T 3arc_I 3 TLKITVYIVVTFFVLL 18 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHH
Confidence 3466666665554433
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=35.31 E-value=1e+02 Score=20.66 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 22 VLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
.+..+..+...++++++..+....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~ 30 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQY 30 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777777666544
No 65
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=34.38 E-value=98 Score=20.28 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 134 KSKKVLTAMSRRMSRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 134 ~s~~ll~~i~rr~~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
...++++.+.+......+...+++++++++++.++|+
T Consensus 7 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 7 TLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665554444444444444444444545443
No 66
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=34.27 E-value=57 Score=17.59 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 153 IGTVVAVLVIAIILILY 169 (174)
Q Consensus 153 l~~ii~~l~~~i~~v~~ 169 (174)
.++++.-.+.+|+++-|
T Consensus 16 I~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 16 IFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444333444444433
No 67
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=34.21 E-value=47 Score=16.55 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 144 RRMSRNKWIIGTVVAVLVIAIILI 167 (174)
Q Consensus 144 rr~~~dk~il~~ii~~l~~~i~~v 167 (174)
|+-+++-++=+..+.+|.+.+.++
T Consensus 4 rqNlQ~LfvNfcLilICllLi~Ii 27 (30)
T 1yod_A 4 RQNLQNLYINRCLREICQELKEIR 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556556666666555544
No 68
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=34.16 E-value=48 Score=20.36 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 157 VAVLVIAIILILYFK 171 (174)
Q Consensus 157 i~~l~~~i~~v~~~k 171 (174)
.+++++.|++++.-|
T Consensus 25 ~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 25 GILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc
Confidence 334444555555444
No 69
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=33.34 E-value=55 Score=17.11 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030656 151 WIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~ 172 (174)
+...+++.+++++.++.+|.-|
T Consensus 9 l~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 9 LAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHeee
Confidence 4445555555555555555433
No 70
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=33.11 E-value=59 Score=19.76 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 152 IIGTVVAVLVIAIILIL 168 (174)
Q Consensus 152 il~~ii~~l~~~i~~v~ 168 (174)
++.+++.+++++-+.|+
T Consensus 13 vlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 55555555555544444
No 71
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.69 E-value=3.1e+02 Score=25.56 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=21.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhh
Q 030656 83 VNQSTDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHG 127 (174)
Q Consensus 83 l~~~~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~ 127 (174)
++.....+.....-..+.++--..+.++|...-..|.....++.+
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555444444444444433
No 72
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=32.63 E-value=73 Score=24.44 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 87 TDRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 87 ~~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
...|.+..+.+.|..++=.....=...|.+.|.++..++..+..++..|..-|..-
T Consensus 216 ~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777778899999999999999999999888776543
No 73
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=32.37 E-value=80 Score=18.66 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhh
Q 030656 88 DRIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDN 131 (174)
Q Consensus 88 ~~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~ 131 (174)
+.|...+.-++|+..+.....+.+-..-|.|....++..+....
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566777777888888888888888888888777776665544
No 74
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.89 E-value=1.6e+02 Score=21.61 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHhhHHhhcCCCCCcccccHHHHHHHhhhhHHhhchhHHHHHHHHHHH
Q 030656 20 KAVLLAKLREYKSDLNNLKSEVKRLVSGNLN-AAARDELLESGMADALTASADQRSRLMMSTERVNQSTDRIKDSRRTML 98 (174)
Q Consensus 20 r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~R~~Ll~~~~~~~~~~~~~~r~~ll~~~~~l~~~~~~L~~s~r~~~ 98 (174)
-.-|+....+|+..+..++.+|.....++.. +.+=+.=+... ......-+.++.+-...++.--..+..+..-+.
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~----Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~ 87 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQA----EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888888887765544311 00000001000 000001111111111112222233344443333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHH
Q 030656 99 ETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVL 139 (174)
Q Consensus 99 ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll 139 (174)
-+...-..=+..|...++++..-...+....+++.++.+..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444455677777777777777777777777777654
No 75
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=30.65 E-value=68 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030656 154 GTVVAVLVIAIILILYF 170 (174)
Q Consensus 154 ~~ii~~l~~~i~~v~~~ 170 (174)
++.+++.+++++++...
T Consensus 15 aG~vvvv~i~~ali~VS 31 (39)
T 3arc_X 15 SGAVVLGLTFAVLIAIS 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHheeEe
Confidence 33333333455444443
No 76
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=29.58 E-value=1.3e+02 Score=23.07 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++..-.
T Consensus 115 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~ 157 (282)
T 3mfq_A 115 AVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELS 157 (282)
T ss_dssp HHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677789999999999999999999999999986443
No 77
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=28.78 E-value=1.1e+02 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..+.|..+..|....+.|..+|+.|..+++..-..
T Consensus 128 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 171 (284)
T 2prs_A 128 TAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAP 171 (284)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666789889999999999999999999999866544
No 78
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=28.12 E-value=98 Score=23.71 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++..-..
T Consensus 131 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 174 (284)
T 3cx3_A 131 EAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEK 174 (284)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666889889999999999999999999999875544
No 79
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=27.94 E-value=99 Score=24.20 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++.....
T Consensus 149 ~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~ 192 (313)
T 1toa_A 149 SVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQS 192 (313)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666667889889999999999999999999999866543
No 80
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=27.92 E-value=99 Score=24.15 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++.....
T Consensus 144 ~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (312)
T 2o1e_A 144 EVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKK 187 (312)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566666889889999999999999999999999876544
No 81
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=27.90 E-value=1e+02 Score=23.78 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..+.|..+..|....+.|..+|+.|..+++.....
T Consensus 144 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 187 (291)
T 1pq4_A 144 QATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQP 187 (291)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555566666789889999999999999999999999876544
No 82
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=27.14 E-value=1.2e+02 Score=23.29 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
..+.+.-.+..+.|..+..|....+.|..+|+.|..+++.....
T Consensus 133 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~ 176 (286)
T 3gi1_A 133 EAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKK 176 (286)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555556666889889999999999999999999999876544
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.14 E-value=1.8e+02 Score=20.97 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=26.8
Q ss_pred HhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 12 ARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 12 ~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
.-+++|+++++++.=.++|+.+...++.++...+
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr 98 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSALRQQLISKR 98 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999888876554
No 84
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.67 E-value=75 Score=16.52 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 22 VLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
++..|+++.-++...+..++.+++
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777777777777776554
No 85
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.60 E-value=96 Score=17.77 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 22 VLLAKLREYKSDLNNLKSEVKR 43 (174)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~~~~~ 43 (174)
.+..++.++.+++..++.+...
T Consensus 15 ~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 15 TANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 86
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=26.51 E-value=39 Score=21.68 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 148 RNKWIIGTVVAVLVIAIILILYFKLA 173 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~k~~ 173 (174)
.-+.++.+.+++.++.+++-+|-||.
T Consensus 60 ~P~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHC-------
T ss_pred cCeeehhhHHHHHHHHHHHHHhhhhc
Confidence 34566666666666666666776663
No 87
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=26.47 E-value=46 Score=20.21 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 030656 160 LVIAIILILY 169 (174)
Q Consensus 160 l~~~i~~v~~ 169 (174)
+++.|++++.
T Consensus 29 fi~GI~iilS 38 (67)
T 2jp3_A 29 CIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 3344444443
No 88
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=26.09 E-value=75 Score=16.34 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 030656 151 WIIGTVVAVLVIAIILILYFKL 172 (174)
Q Consensus 151 ~il~~ii~~l~~~i~~v~~~k~ 172 (174)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (32)
T 1q90_L 4 ITSYVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776654
No 89
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=25.27 E-value=1.2e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++..-.
T Consensus 156 ~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~ 198 (321)
T 1xvl_A 156 YVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLE 198 (321)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666688988999999999999999999999986544
No 90
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.12 E-value=1.1e+02 Score=23.56 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
..+.+.-.+..+.|..+..|....+.|..+|+.|..+++..-
T Consensus 135 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l 176 (294)
T 3hh8_A 135 YSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKF 176 (294)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666678898899999999999999999999997643
No 91
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.85 E-value=3.3e+02 Score=23.35 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 21 AVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
..+..+|...++.|+++.+..+.+.
T Consensus 60 rDltkrINELKnqLEdlsKnsKdse 84 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSH 84 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHH
Confidence 3566677777777777765554443
No 92
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=24.52 E-value=1.3e+02 Score=23.58 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVS 46 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~ 46 (174)
..+.+.-.+..++|..+..|....+.|..+|+.|..+++..-.
T Consensus 142 ~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~ 184 (307)
T 3ujp_A 142 YVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLE 184 (307)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666788988999999999999999999999987543
No 93
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=24.36 E-value=16 Score=28.17 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKSDL 34 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l 34 (174)
.++.++-.+..+++++..+.....+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~a~~yn~~l 35 (252)
T 2w1k_A 5 QVKGHATFVKSMTTEMYQEQQNHSLAYNQRL 35 (252)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 4566777777888877777777777777766
No 94
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=24.05 E-value=87 Score=17.81 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 030656 155 TVVAVLVIAIILILY 169 (174)
Q Consensus 155 ~ii~~l~~~i~~v~~ 169 (174)
+.+++.+++++++..
T Consensus 26 G~vVvv~i~~aLi~V 40 (50)
T 3bz1_X 26 GAVVLGLTFAVLIAI 40 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHheee
Confidence 333333344444433
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.77 E-value=3e+02 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030656 21 AVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
..+..++..++..|+.+.+.+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666666555543
No 96
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=23.67 E-value=1.5e+02 Score=20.85 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 5 IRKMDLEARSLQP--NVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 5 i~qme~E~~~~~~--~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+.+.+.++..+.| ++-.++...+.+.+.|+.++++.++++-
T Consensus 85 l~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 85 LTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777765 3455666777777778888777776654
No 97
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=23.46 E-value=2e+02 Score=20.43 Aligned_cols=39 Identities=5% Similarity=0.069 Sum_probs=31.2
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 030656 11 EARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSGNL 49 (174)
Q Consensus 11 E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 49 (174)
..-.+.|++.+.+..-+=.-|.++.+.+.++.++.+.+.
T Consensus 65 ~lgkl~~~eeD~~WqvIi~~R~E~~d~k~e~~rles~w~ 103 (162)
T 1g73_A 65 LLGKMNSEEEDEVWQVIIGARAEMTSKHQEYLKLETTWM 103 (162)
T ss_dssp TTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456777788888888999999999999998887764
No 98
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=23.45 E-value=49 Score=20.42 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCChhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSLQPNV-KAVLLAKLREYKSDLNNLKSEVK 42 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~-r~~~~~~~~~~~~~l~~l~~~~~ 42 (174)
+++..|-.++....+. |..-+.++++|-+.|-+|+....
T Consensus 34 LLqSIEgmik~aA~~vLRnP~~~kLr~~an~Ll~LK~~~~ 73 (76)
T 2rp4_A 34 LLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAY 73 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhhcc
Confidence 4444454444433322 44445789999999999987653
No 99
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.39 E-value=1.2e+02 Score=18.98 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 147 SRNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 147 ~~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
..|+++..+.++++++.++..+|.
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~ 70 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYC 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777766664
No 100
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.20 E-value=1.2e+02 Score=17.86 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHHH
Q 030656 89 RIKDSRRTMLETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAMS 143 (174)
Q Consensus 89 ~L~~s~r~~~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i~ 143 (174)
.|...+..+.++-++.....+.+..--|.|....++..++......=.+.-+.+.
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~ 59 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMM 59 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888888888888887777666554444444333
No 101
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=22.20 E-value=1.2e+02 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 030656 155 TVVAVLVIAIILILYF 170 (174)
Q Consensus 155 ~ii~~l~~~i~~v~~~ 170 (174)
+++++++++++++++.
T Consensus 234 vl~fL~il~~l~y~~k 249 (263)
T 2yiu_B 234 SVIFLIVLAALLYLTN 249 (263)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333344333
No 102
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.21 E-value=1.7e+02 Score=22.42 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030656 5 IRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLVSG 47 (174)
Q Consensus 5 i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~ 47 (174)
+++++.++..+...- ..+...++..+.++..|+.+++++.+.
T Consensus 56 l~eL~~ql~~L~arN-e~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 56 IHQLEARIDSLAARN-SKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444554443321 226667777777788888877777654
No 103
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=20.99 E-value=2.3e+02 Score=20.18 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030656 2 FWQIRKMDLEARSLQPNVKAVLLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 2 ~~~i~qme~E~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+.+|..-+..+..+|++.+.+..---+-..+|+.+|-...+.++
T Consensus 72 R~Ll~sVd~~~~~lp~s~~rEVema~k~L~kDM~eLis~mklaq 115 (162)
T 1k04_A 72 RTLLATVDETIPLLPASTHREIEMAQKLLNSDLGELINKMKLAQ 115 (162)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhhhhccCHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666778888888877777777788888877776654
No 104
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=20.99 E-value=85 Score=16.85 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHhcHhhh
Q 030656 109 QDLSSQRQSLLHAHNTLHGV 128 (174)
Q Consensus 109 ~~L~~Qre~L~~~~~~~~~i 128 (174)
-+|..||+.|..-..++.-+
T Consensus 12 L~LK~QRDkL~qyqkri~~~ 31 (39)
T 3htu_B 12 LQLKQQRDKLRQYQKRIAQQ 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46899999998888776543
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.89 E-value=1.4e+02 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030656 23 LLAKLREYKSDLNNLKSEVKRLV 45 (174)
Q Consensus 23 ~~~~~~~~~~~l~~l~~~~~~~~ 45 (174)
+..++.++..++..|+.++.+.+
T Consensus 45 LEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 45 LELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555543
No 106
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=20.78 E-value=1.3e+02 Score=22.94 Aligned_cols=11 Identities=0% Similarity=0.017 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 030656 159 VLVIAIILILY 169 (174)
Q Consensus 159 ~l~~~i~~v~~ 169 (174)
+++++++++++
T Consensus 212 L~il~~l~y~~ 222 (241)
T 1pp9_D 212 MGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 107
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.66 E-value=1.7e+02 Score=18.60 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 030656 4 QIRKMDLEARSLQPNVKAVLLAKLREYKS 32 (174)
Q Consensus 4 ~i~qme~E~~~~~~~~r~~~~~~~~~~~~ 32 (174)
..+.+-..++.+++.+|..|..+....+.
T Consensus 37 isK~lge~Wk~ls~~eK~~Y~~~A~~~k~ 65 (101)
T 1v63_A 37 RMVEIGSRWQRISQSQKEHYKKLAEEQQR 65 (101)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45667778999999999999888765333
No 108
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.55 E-value=3.1e+02 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcHhhhhhhHHHHHHHHHHH
Q 030656 98 LETEELGVSILQDLSSQRQSLLHAHNTLHGVDDNVSKSKKVLTAM 142 (174)
Q Consensus 98 ~ete~~g~~~l~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ll~~i 142 (174)
.++.+....+......-.+.+..+...+.++.........++..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i~~~I 155 (341)
T 3zx6_A 111 RQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVI 155 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444455555555544444444444433
No 109
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=20.27 E-value=1.1e+02 Score=23.35 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030656 146 MSRNKWIIGTVVAVLVIAIILILY 169 (174)
Q Consensus 146 ~~~dk~il~~ii~~l~~~i~~v~~ 169 (174)
+.-|++++|+.++++++.-+.+++
T Consensus 217 mVlDRlfL~iF~i~~i~gT~~I~l 240 (250)
T 1oed_B 217 MVADRLFLYVFFVICSIGTFSIFL 240 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567889998877777666665554
No 110
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=20.03 E-value=1.4e+02 Score=17.40 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030656 148 RNKWIIGTVVAVLVIAIILILYF 170 (174)
Q Consensus 148 ~dk~il~~ii~~l~~~i~~v~~~ 170 (174)
.|.++..+.++++++.++..+|.
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~ 49 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYC 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777776666654
Done!