Query 030658
Match_columns 173
No_of_seqs 116 out of 1063
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_V 60S ribosomal protein L 100.0 2.5E-63 8.6E-68 399.0 13.1 170 1-170 1-170 (171)
2 4a17_Q RPL17, 60S ribosomal pr 100.0 9.5E-63 3.3E-67 398.7 15.8 166 1-167 3-168 (183)
3 2zkr_r 60S ribosomal protein L 100.0 8E-62 2.7E-66 394.1 15.4 164 1-165 1-164 (184)
4 3u5e_P L20A, YL17, 60S ribosom 100.0 4.8E-62 1.6E-66 395.3 14.0 164 1-165 1-164 (184)
5 1vq8_R 50S ribosomal protein L 100.0 7.6E-59 2.6E-63 368.1 12.6 152 2-157 3-154 (155)
6 3j21_S 50S ribosomal protein L 100.0 9.8E-59 3.3E-63 367.4 11.3 150 2-155 5-154 (155)
7 3r8s_S 50S ribosomal protein L 100.0 2E-41 6.7E-46 254.6 10.4 109 13-154 1-110 (110)
8 2ftc_M Mitochondrial ribosomal 100.0 8.3E-40 2.8E-44 245.8 11.9 107 18-157 2-110 (110)
9 2zjr_P 50S ribosomal protein L 100.0 2E-40 7E-45 257.0 8.7 112 12-156 21-133 (134)
10 1i4j_A 50S ribosomal protein L 100.0 8.2E-40 2.8E-44 245.8 10.9 108 13-156 1-109 (110)
11 3bbo_U Ribosomal protein L22; 100.0 1.5E-40 5.2E-45 271.5 0.7 123 3-158 20-143 (199)
12 4fxe_A Antitoxin RELB; toxin/a 68.3 9.3 0.00032 26.1 4.9 34 27-61 14-47 (79)
13 3lvl_A NIFU-like protein; prot 54.7 24 0.00081 25.9 5.4 70 14-106 56-125 (129)
14 4eb5_C NIFU protein (NIFU-1); 50.7 68 0.0023 24.4 7.6 69 14-105 50-119 (153)
15 3k2t_A LMO2511 protein; lister 49.1 8.7 0.0003 24.8 1.9 16 36-51 10-25 (57)
16 1dd4_C 50S ribosomal protein L 45.5 33 0.0011 20.6 4.0 22 29-50 3-24 (40)
17 3fau_A NEDD4-binding protein 2 44.6 14 0.00049 24.6 2.5 36 36-71 5-47 (82)
18 2d9i_A NEDD4-binding protein 2 43.9 22 0.00074 24.4 3.5 37 36-72 13-56 (96)
19 3ka5_A Ribosome-associated pro 43.4 12 0.00041 24.9 1.9 16 36-51 10-25 (65)
20 2vkc_A NEDD4-binding protein 2 32.7 35 0.0012 25.0 3.2 36 36-71 58-100 (135)
21 2z7e_A ISCU protein, NIFU-like 31.0 63 0.0022 24.6 4.5 71 14-106 55-125 (157)
22 2zqe_A MUTS2 protein; alpha/be 27.0 35 0.0012 23.1 2.2 18 36-53 9-26 (83)
23 2qq4_A Iron-sulfur cluster bio 25.7 75 0.0026 23.4 4.0 38 14-51 56-93 (138)
24 1xjs_A NIFU-like protein; SR17 25.7 75 0.0026 23.7 4.0 37 14-50 58-94 (147)
25 1su0_B NIFU like protein ISCU; 23.5 96 0.0033 23.5 4.3 81 14-103 57-142 (159)
26 3lyv_A Ribosome-associated fac 23.3 31 0.0011 22.9 1.3 14 37-50 12-25 (66)
27 3shg_B VBHA; ampylation, adeny 23.1 59 0.002 21.4 2.6 22 94-115 12-33 (61)
28 1ojh_A NBLA; degradation prote 21.6 1.2E+02 0.004 20.1 3.9 24 28-51 14-37 (65)
29 2q8v_A NBLA protein; phycobili 21.2 1.2E+02 0.0041 19.9 3.9 24 28-51 19-42 (63)
30 3ouv_A Serine/threonine protei 20.6 40 0.0014 21.4 1.4 15 36-50 13-27 (71)
No 1
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=2.5e-63 Score=399.03 Aligned_cols=170 Identities=87% Similarity=1.297 Sum_probs=165.7
Q ss_pred CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030658 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (173)
Q Consensus 1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~ 80 (173)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++|++|+||++|++++|||+
T Consensus 1 m~~Ys~~~~~~~~~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~ 80 (171)
T 3iz5_V 1 MVKYSREANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNG 80 (171)
T ss_dssp CCSCSSCCSCTTTEEEEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCS
T ss_pred CCcccCCCCCCCeeEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999669999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030658 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (173)
Q Consensus 81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~ 160 (173)
+||||+|+|+.|+++|+||++||+++|||+|+|||.||+||+|++++|++|||+||++++++++|||+|+|+|.++.+||
T Consensus 81 ~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 160 (171)
T 3iz5_V 81 QGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160 (171)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEETTHHHHTT
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEeecCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhhhhhc
Q 030658 161 EPETQLATSK 170 (173)
Q Consensus 161 ~~~~~~~~~~ 170 (173)
|+|+...+.+
T Consensus 161 ~~~~~~~~~~ 170 (171)
T 3iz5_V 161 EPESQIAARK 170 (171)
T ss_dssp TTCCSSCCCC
T ss_pred chhhhhhhcc
Confidence 9998776654
No 2
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=9.5e-63 Score=398.69 Aligned_cols=166 Identities=55% Similarity=0.842 Sum_probs=154.8
Q ss_pred CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030658 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (173)
Q Consensus 1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~ 80 (173)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+|+||++|+++ |||+
T Consensus 3 m~~Ys~~~~~p~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~-~g~~ 81 (183)
T 4a17_Q 3 KTNYSREPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHE-FGRT 81 (183)
T ss_dssp CCCCSSCCSCTTSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGG-TTCS
T ss_pred ccccCCCCCCCCeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhh-cCCc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030658 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (173)
Q Consensus 81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~ 160 (173)
+||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|+.++|++|||+||+++|.+++|||||+|+|.++++|+
T Consensus 82 ~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k 161 (183)
T 4a17_Q 82 QGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK 161 (183)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchhhh
Q 030658 161 EPETQLA 167 (173)
Q Consensus 161 ~~~~~~~ 167 (173)
|+|..+.
T Consensus 162 ~~~~~~~ 168 (183)
T 4a17_Q 162 EAPKDAA 168 (183)
T ss_dssp -------
T ss_pred chhhhhh
Confidence 9887654
No 3
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8e-62 Score=394.10 Aligned_cols=164 Identities=68% Similarity=1.066 Sum_probs=149.0
Q ss_pred CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030658 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (173)
Q Consensus 1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~ 80 (173)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.||++|+++|+||||+|||+|+||++++++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~-~~~~ 79 (184)
T 2zkr_r 1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQ-WGWT 79 (184)
T ss_dssp -CCCSSCCSCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTS-CSCS
T ss_pred CCccCCCCCCCCeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccc-cccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030658 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (173)
Q Consensus 81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~ 160 (173)
+||||+|+|+.|+++|+||++||+++|||+|+|||.||+||+|++++|++|||+||++++++++|||+|+|+|.++.+|+
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 159 (184)
T 2zkr_r 80 QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 (184)
T ss_dssp BEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchh
Q 030658 161 EPETQ 165 (173)
Q Consensus 161 ~~~~~ 165 (173)
|+|+.
T Consensus 160 ~~~~~ 164 (184)
T 2zkr_r 160 PEEEV 164 (184)
T ss_dssp -----
T ss_pred chhhh
Confidence 88764
No 4
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=4.8e-62 Score=395.30 Aligned_cols=164 Identities=62% Similarity=0.921 Sum_probs=160.6
Q ss_pred CccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCC
Q 030658 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG 80 (173)
Q Consensus 1 ~~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~ 80 (173)
|++||++|+|++++++|.++++++||+|+++||++||||++++|+.+|++|+++|+||||++||+|+||++++++ |||+
T Consensus 1 m~~Ys~~~~~~~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~-~g~~ 79 (184)
T 3u5e_P 1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKE-FGVT 79 (184)
T ss_dssp -CCCSCCCSCGGGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGG-GTCS
T ss_pred CCccCCCCCCCCceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhc-cCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998 8999
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccCCC
Q 030658 81 QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKK 160 (173)
Q Consensus 81 ~gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~~~ 160 (173)
+||||+|+|+.|+++|+||++||+++|||+|+|||.||+||+|++++|++|||+||++++++++|||+|+|+|.++++||
T Consensus 80 ~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k 159 (184)
T 3u5e_P 80 KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAK 159 (184)
T ss_dssp CEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCC
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccchh
Q 030658 161 EPETQ 165 (173)
Q Consensus 161 ~~~~~ 165 (173)
|+|..
T Consensus 160 ~~~~~ 164 (184)
T 3u5e_P 160 AAEKK 164 (184)
T ss_dssp CCCCC
T ss_pred cHHHH
Confidence 98754
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=7.6e-59 Score=368.06 Aligned_cols=152 Identities=33% Similarity=0.526 Sum_probs=146.9
Q ss_pred ccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCC
Q 030658 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ 81 (173)
Q Consensus 2 ~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~ 81 (173)
++||+ |+|++++++|.++++++||+|+++||++||||++++|+.||++|+++|+||||+|||+|+||++++ |||++
T Consensus 3 ~~Ys~-~~~~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~---~~~~~ 78 (155)
T 1vq8_R 3 ISYSV-EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKV---DGWDA 78 (155)
T ss_dssp CCCSS-CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTC---SSSSB
T ss_pred cccCC-CCCCCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccc---ccccc
Confidence 68999 889999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCcc
Q 030658 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (173)
Q Consensus 82 gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~ 157 (173)
||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|+++||++|||+||++++++++|||||+|+|.+++
T Consensus 79 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~~ 154 (155)
T 1vq8_R 79 GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVE 154 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997653
No 6
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.8e-59 Score=367.42 Aligned_cols=150 Identities=36% Similarity=0.528 Sum_probs=147.2
Q ss_pred ccccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCC
Q 030658 2 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ 81 (173)
Q Consensus 2 ~~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~ 81 (173)
|+||++|+|++++++|.++++++||||+++||++||||++++|+.+|++|+++|+||||++||+|+||+++ |||++
T Consensus 5 ~~Ys~~~~~~~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~----~~~~~ 80 (155)
T 3j21_S 5 FGYSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPG----KGFGP 80 (155)
T ss_dssp -CCCSCCCHHHHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCS----SSCSB
T ss_pred eecccCCCCCCeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccc----cCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCC
Q 030658 82 GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 155 (173)
Q Consensus 82 gr~p~Kaa~~i~k~L~sa~~NA~~kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~ 155 (173)
||||+|+|+.|+++|+||++||+++|||+|+|||+||+||+|++++|++|||+||++++++++|||+|+|+|.+
T Consensus 81 gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 81 GRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 7
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=2e-41 Score=254.64 Aligned_cols=109 Identities=27% Similarity=0.348 Sum_probs=106.1
Q ss_pred ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030658 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI 92 (173)
Q Consensus 13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i 92 (173)
++++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|+.|
T Consensus 1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~---------------------------f------~pkkaa~~v 47 (110)
T 3r8s_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILT---------------------------Y------TNKKAAVLV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCHHHHHH
T ss_pred CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHh---------------------------h------CCHHHHHHH
Confidence 5789999999999999999999999999999999999 5 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeC
Q 030658 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154 (173)
Q Consensus 93 ~k~L~sa~~NA~~k-gld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~ 154 (173)
+++|+||++||+++ |+|+|+|||+|++||+|+++||++|||+||++++++++|||+|+|+|+
T Consensus 48 ~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 48 KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 99999999999986 999999999999999999999999999999999999999999999984
No 8
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=8.3e-40 Score=245.79 Aligned_cols=107 Identities=24% Similarity=0.295 Sum_probs=102.7
Q ss_pred eeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHHHHHH
Q 030658 18 RGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLK 97 (173)
Q Consensus 18 ~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~k~L~ 97 (173)
+.+++++||+|+++||++||||++++|+.||+ | ||+|+|+.|+++|+
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~---------------------------f------~pkkaa~~v~klL~ 48 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLE---------------------------F------NDKKGAKIIKEVLL 48 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHHHHHHH
Confidence 36899999999999999999999999999999 6 89999999999999
Q ss_pred HHHHHHHH-cCCC-CCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCcc
Q 030658 98 NAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEP 157 (173)
Q Consensus 98 sa~~NA~~-kgld-~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~ 157 (173)
||++||++ +|+| +|+|||+|++||+|+++||++|||+||++++++++|||+|+|+|.+++
T Consensus 49 sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~~~p 110 (110)
T 2ftc_M 49 EAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110)
T ss_pred HHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence 99999998 7999 899999999999999999999999999999999999999999997653
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=2e-40 Score=256.96 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=108.0
Q ss_pred CceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHH
Q 030658 12 TKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKF 91 (173)
Q Consensus 12 ~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~ 91 (173)
+++++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|..
T Consensus 21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~---------------------------f------~pkKaA~~ 67 (134)
T 2zjr_P 21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR---------------------------F------IPRSASEP 67 (134)
T ss_dssp CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHH---------------------------H------CCCTTHHH
T ss_pred ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CcHhHHHH
Confidence 46899999999999999999999999999999999999 5 89999999
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030658 92 ILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (173)
Q Consensus 92 i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~ 156 (173)
|+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.++
T Consensus 68 v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~ 133 (134)
T 2zjr_P 68 VAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 133 (134)
T ss_dssp HHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred HHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence 99999999999995 899999999999999999999999999999999999999999999999753
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=8.2e-40 Score=245.82 Aligned_cols=108 Identities=26% Similarity=0.299 Sum_probs=104.1
Q ss_pred ceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHH
Q 030658 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFI 92 (173)
Q Consensus 13 ~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i 92 (173)
++++|.++++++||+|+++||++||||++++|+.||+ | ||+|+|+.|
T Consensus 1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~---------------------------~------~pkkaa~~v 47 (110)
T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILR---------------------------Y------TNKRGAYFV 47 (110)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHH---------------------------H------CCCTTHHHH
T ss_pred CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHH---------------------------H------CCHHHHHHH
Confidence 3689999999999999999999999999999999999 5 899999999
Q ss_pred HHHHHHHHHHHHHc-CCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCc
Q 030658 93 LDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156 (173)
Q Consensus 93 ~k~L~sa~~NA~~k-gld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~ 156 (173)
+++|+||++||+++ |+|+|+|||+|++||+|++ ++|||+||++++++++|||+|+|+|.++
T Consensus 48 ~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~~ 109 (110)
T 1i4j_A 48 AKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKHG 109 (110)
T ss_dssp HHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred HHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence 99999999999987 9999999999999999998 9999999999999999999999999754
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.5e-40 Score=271.45 Aligned_cols=123 Identities=22% Similarity=0.300 Sum_probs=109.8
Q ss_pred cccCCCCCCCceEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCC
Q 030658 3 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQG 82 (173)
Q Consensus 3 ~y~~~~~~~~~~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~g 82 (173)
+||.+|.|++++++|.++++++||+|+++||++||||++++|+.||+ |
T Consensus 20 ~~~~~~~n~~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~---------------------------f----- 67 (199)
T 3bbo_U 20 GLHHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILE---------------------------L----- 67 (199)
T ss_dssp ----------CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGG---------------------------G-----
T ss_pred cCCCCCCCCCeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHH---------------------------H-----
Confidence 57778899999999999999999999999999999999999999999 5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHH-cCCCCCCeEEEEEEEecCCccccceecCCCccccccccceEEEEEeeeCCccC
Q 030658 83 RWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPV 158 (173)
Q Consensus 83 r~p~Kaa~~i~k~L~sa~~NA~~-kgld~d~L~I~~~~v~kG~~~kr~~pRArGRa~~~~k~~~hI~IvL~E~~~~~ 158 (173)
+|+|+|..|+++|+||++||++ +|+|+|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.+++.
T Consensus 68 -~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~ 143 (199)
T 3bbo_U 68 -MPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD 143 (199)
T ss_dssp -CCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC
T ss_pred -CCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCCchH
Confidence 8999999999999999999998 69999999999999999999999999999999999999999999999987754
No 12
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=68.30 E-value=9.3 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhccccccee
Q 030658 27 KNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61 (173)
Q Consensus 27 KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~ 61 (173)
+.+..|+..+ |++..+|+..+-.-+..+..|||.
T Consensus 14 ~~a~~v~~~l-Gl~~s~Ai~~fl~~v~~~~~iPF~ 47 (79)
T 4fxe_A 14 ARSYAALEKM-GVTPSEALRLMLEYIADNERLPFK 47 (79)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHhCCCCCc
Confidence 3567788888 999999999887777778888874
No 13
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=54.65 E-value=24 Score=25.94 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=49.2
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHH
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFIL 93 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~ 93 (173)
.++-....-.+|.==+..++.+|+|++++||..+...-+... +|.+. --.++|..-.
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~---------------------L~l~p--~r~~Ca~La~ 112 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEE---------------------LELPP--VKIHCSILAE 112 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHH---------------------HTCCG--GGGHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH---------------------cCCCc--cchhHHHHHH
Confidence 445556666777777889999999999999998766432211 11111 2357888888
Q ss_pred HHHHHHHHHHHHc
Q 030658 94 DLLKNAESNAEVK 106 (173)
Q Consensus 94 k~L~sa~~NA~~k 106 (173)
+.|+.|+.+.+.+
T Consensus 113 ~Al~~Al~~y~~k 125 (129)
T 3lvl_A 113 DAIKAAIADYKSK 125 (129)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 14
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=50.70 E-value=68 Score=24.37 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=48.1
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCC-CCCCCCCchhhhHHH
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRH-PNGQGRWPVKSAKFI 92 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~-g~~~gr~p~Kaa~~i 92 (173)
.++-....-.+|.==+..++.+|+|++++||..+...-++. + + |.+. .-.++|..-
T Consensus 50 D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~--------~-------------L~glpp--~Ri~CA~La 106 (153)
T 4eb5_C 50 DIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAE--------A-------------LGGLPK--QKMHCSNLA 106 (153)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHH--------H-------------HTCCCT--TSHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHH--------H-------------hcCCCc--chhHHHHHH
Confidence 34555566677777788999999999999999764432110 0 1 1121 236888899
Q ss_pred HHHHHHHHHHHHH
Q 030658 93 LDLLKNAESNAEV 105 (173)
Q Consensus 93 ~k~L~sa~~NA~~ 105 (173)
.+.|+.|+.+...
T Consensus 107 ~~AL~~Al~~y~~ 119 (153)
T 4eb5_C 107 ADALRRAIVDYFR 119 (153)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 15
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=49.06 E-value=8.7 Score=24.83 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=13.2
Q ss_pred HhCCCHHHHHHHHHHH
Q 030658 36 IRKLPLTKAKRYLEDV 51 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (173)
++=|+++||+.||+.+
T Consensus 10 ~kpmsveEAv~qmel~ 25 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNLL 25 (57)
T ss_dssp -CCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5679999999999963
No 16
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=45.45 E-value=33 Score=20.55 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 030658 29 TRETAHAIRKLPLTKAKRYLED 50 (173)
Q Consensus 29 ~~~va~~IrG~~v~~A~~~L~~ 50 (173)
..+++++|.+||+-|+-+..+.
T Consensus 3 ~~~iie~i~~lTvlE~~eLvk~ 24 (40)
T 1dd4_C 3 IDEIIEAIEKLTVSELAELVKK 24 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHH
Confidence 3579999999999998887663
No 17
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=44.58 E-value=14 Score=24.58 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=21.4
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCccch
Q 030658 36 IRKLPLTKAKRYLEDVMAHK-------QAIPFTRFCGGVGRTA 71 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V~~~k-------~~iP~~r~~~~~~~~~ 71 (173)
+.||+++||+..|+..+..- ..++....--|.|.+|
T Consensus 5 LHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS 47 (82)
T 3fau_A 5 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHS 47 (82)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC----
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 36999999999998876643 2344444445555544
No 18
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=43.92 E-value=22 Score=24.42 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=25.1
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCccchh
Q 030658 36 IRKLPLTKAKRYLEDVMAHK-------QAIPFTRFCGGVGRTAQ 72 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V~~~k-------~~iP~~r~~~~~~~~~~ 72 (173)
+.||+++||+..|+..|+.- .-++...--.|.|.++.
T Consensus 13 LHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~ 56 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQ 56 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCC
Confidence 46999999999998876642 33444444456666653
No 19
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=43.40 E-value=12 Score=24.91 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.4
Q ss_pred HhCCCHHHHHHHHHHH
Q 030658 36 IRKLPLTKAKRYLEDV 51 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V 51 (173)
++=|+++||+.||+.+
T Consensus 10 ~kpMsveEAv~qmel~ 25 (65)
T 3ka5_A 10 IKPMSEEEAVLEMELL 25 (65)
T ss_dssp CSCBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3569999999999964
No 20
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=32.69 E-value=35 Score=25.04 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=24.3
Q ss_pred HhCCCHHHHHHHHHHHhhcc-------cccceeeecCCCccch
Q 030658 36 IRKLPLTKAKRYLEDVMAHK-------QAIPFTRFCGGVGRTA 71 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V~~~k-------~~iP~~r~~~~~~~~~ 71 (173)
+.||+++||+..|...|+.- .-++..+---|.|.++
T Consensus 58 LHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG~hS 100 (135)
T 2vkc_A 58 LHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHS 100 (135)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSCSSS
T ss_pred eCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCCcCC
Confidence 35999999999998776542 3344455545556555
No 21
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=31.02 E-value=63 Score=24.58 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=48.4
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHHhhcccccceeeecCCCccchhhhcCCCCCCCCCchhhhHHHH
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFIL 93 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p~Kaa~~i~ 93 (173)
.++-....--+|.==+..++.+|+|++++||..+...-+...- + +.+.. -.++|-.-.
T Consensus 55 d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~L--------g------------~l~p~--R~~Ca~La~ 112 (157)
T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEEL--------G------------GLPPQ--KIHCTNLGL 112 (157)
T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHH--------T------------CCCCS--SCCTTCCHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHh--------c------------ccCcc--hhHhHHHHH
Confidence 4566667777888888999999999999999987664221100 0 11112 256677777
Q ss_pred HHHHHHHHHHHHc
Q 030658 94 DLLKNAESNAEVK 106 (173)
Q Consensus 94 k~L~sa~~NA~~k 106 (173)
+.|+.|+.+++.+
T Consensus 113 ~Al~~Al~~y~~k 125 (157)
T 2z7e_A 113 ETLHVAIKDYLMK 125 (157)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8899998887653
No 22
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=26.98 E-value=35 Score=23.07 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=15.2
Q ss_pred HhCCCHHHHHHHHHHHhh
Q 030658 36 IRKLPLTKAKRYLEDVMA 53 (173)
Q Consensus 36 IrG~~v~~A~~~L~~V~~ 53 (173)
++||+++||...|..-|+
T Consensus 9 LhG~~~~eA~~~l~~fl~ 26 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALE 26 (83)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 469999999999997654
No 23
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=25.67 E-value=75 Score=23.38 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=30.1
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHH
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDV 51 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V 51 (173)
.++-....--+|-==+..++.+|+|++++||..+.+..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 56 DIRFQGQGCAISTASASLMTEAVKGKKVAEALELSRKF 93 (138)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34555566667777788999999999999999987653
No 24
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=25.66 E-value=75 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=30.9
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHH
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLED 50 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~ 50 (173)
.++-....--+|-==+..++.+|+|++++||..+.+.
T Consensus 58 d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~ 94 (147)
T 1xjs_A 58 DAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKI 94 (147)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566667777788788899999999999999998764
No 25
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=23.50 E-value=96 Score=23.46 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=47.9
Q ss_pred eEEEeeCCCccchHHHHHHHHHHhCCCHHHHHHHHHHH---hhcccccceeeecCCCccchhhhcCCCCCCCCCc--hhh
Q 030658 14 SCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDV---MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWP--VKS 88 (173)
Q Consensus 14 ~~kA~~~~~riS~KK~~~va~~IrG~~v~~A~~~L~~V---~~~k~~iP~~r~~~~~~~~~~~~~~~g~~~gr~p--~Ka 88 (173)
.++-....--+|-==+..++.+|+|++++||..+.... +..+...|...+.. . .. | .+...+| .++
T Consensus 57 d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~-l---~~----l-~gv~~~p~R~~C 127 (159)
T 1su0_B 57 DIAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGE-A---EL----L-AGVAKFPQRIKC 127 (159)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGG-G---GG----G-GGGGGCHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhch-h---hh----h-cCcccCcchhHH
Confidence 45556666777777788999999999999999987642 22222222111110 0 00 0 0000133 467
Q ss_pred hHHHHHHHHHHHHHH
Q 030658 89 AKFILDLLKNAESNA 103 (173)
Q Consensus 89 a~~i~k~L~sa~~NA 103 (173)
|-.-.+.|+.|+.+.
T Consensus 128 a~La~~Al~~Al~~~ 142 (159)
T 1su0_B 128 STLAWNALKEAIKRS 142 (159)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 777889999988654
No 26
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=23.34 E-value=31 Score=22.87 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=12.2
Q ss_pred hCCCHHHHHHHHHH
Q 030658 37 RKLPLTKAKRYLED 50 (173)
Q Consensus 37 rG~~v~~A~~~L~~ 50 (173)
+=|+++||+.||+.
T Consensus 12 kpMsveEAv~qMel 25 (66)
T 3lyv_A 12 KPMDVEEARLQMEL 25 (66)
T ss_dssp CEECHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 45899999999994
No 27
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=23.09 E-value=59 Score=21.35 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCCCCCeEE
Q 030658 94 DLLKNAESNAEVKGLDVDALYI 115 (173)
Q Consensus 94 k~L~sa~~NA~~kgld~d~L~I 115 (173)
+..++|++|-...||+||.-++
T Consensus 12 ~avq~Aian~RLEGLEpd~~~l 33 (61)
T 3shg_B 12 RDARNALASQRLEGLEPDPQVV 33 (61)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHhhhhccCCCCHHHH
Confidence 6788999998889999987654
No 28
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=21.57 E-value=1.2e+02 Score=20.11 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 030658 28 NTRETAHAIRKLPLTKAKRYLEDV 51 (173)
Q Consensus 28 K~~~va~~IrG~~v~~A~~~L~~V 51 (173)
+++...++|..|+.++|.++|-.+
T Consensus 14 ~L~~~~~qv~~ls~EQaqe~Lve~ 37 (65)
T 1ojh_A 14 SIRSFATQVQNMSHDQAKDFLVKL 37 (65)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 577888999999999999999875
No 29
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=21.23 E-value=1.2e+02 Score=19.91 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 030658 28 NTRETAHAIRKLPLTKAKRYLEDV 51 (173)
Q Consensus 28 K~~~va~~IrG~~v~~A~~~L~~V 51 (173)
+++...++|..|+.++|.++|-.+
T Consensus 19 ~L~~~~~qV~~ls~EQAqe~Lve~ 42 (63)
T 2q8v_A 19 QMRVMEEQVSAMSLQEARELLLQA 42 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Confidence 678889999999999999999875
No 30
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=20.55 E-value=40 Score=21.42 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=13.5
Q ss_pred HhCCCHHHHHHHHHH
Q 030658 36 IRKLPLTKAKRYLED 50 (173)
Q Consensus 36 IrG~~v~~A~~~L~~ 50 (173)
+.||++++|...|+.
T Consensus 13 v~G~~~~~A~~~L~~ 27 (71)
T 3ouv_A 13 VAGQTVDVAQKNMNV 27 (71)
T ss_dssp CTTCBHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 469999999999995
Done!