BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030660
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AAR G IV +LK +
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------A 96
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D +G TPLH A R H +V +L+K G NA+ +TP +AID+ DIA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIDNGNEDIA 150
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 16 VLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AITNG 60
+L + + +W G TPLH+AA+ G IV +LKY A NG
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG 91
Query: 61 TESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE---- 110
E LL+ D EG TPLH A + H +V +L+K G NA+
Sbjct: 92 HLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK-----YGADVNAQDKFG 146
Query: 111 QTPLSIAIDSSLTDIA 126
+T I+ID+ D+A
Sbjct: 147 KTAFDISIDNGNEDLA 162
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + +++G TPLH+AA G IV +LKY A N + ++ I
Sbjct: 94 EIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDI 152
Query: 72 TDDEGNTPL 80
+ D GN L
Sbjct: 153 SIDNGNEDL 161
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AAR G IV +LK A A N
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNA----------- 96
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D +G TPLH A R H +V +L+K G NA+ +TP +AI DIA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTPFDLAIREGHEDIA 150
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AAR G IV +LK A A N
Sbjct: 82 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQ---------- 130
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVK 97
D G TP A+R HE++ +L K
Sbjct: 131 -DKFGKTPFDLAIREGHEDIAEVLQK 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AAR G IV +LK +
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------A 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D +G TPLH A R H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKA-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G+TPLH+AA G +V +L ++P + D +G TPLH A N H+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAENGHKE 84
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
VV++L+ + P ++ +TPL +A ++ ++ ++ Q
Sbjct: 85 VVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQ 125
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G+TPLH+AA G +V +L ++P + D +G TPLH A N H+
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAENGHKE 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV++L+ + P ++ +TPL +A
Sbjct: 118 VVKLLLSQGADP-NTSDSDGRTPLDLA 143
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 56 AITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109
A NG + + LL +D +G TPLH A N H+ VV++L+ + P ++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 110 EQTPLSIAIDSSLTDIACFIIDQ 132
+TPL +A ++ ++ ++ Q
Sbjct: 71 -KTPLHLAAENGHKEVVKLLLSQ 92
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89
+G TPLH+AA +G P IV +LK+ + D +G TPLH A N H
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVN------------ARDTDGWTPLHLAADNGHL 93
Query: 90 NVVRMLVKKDRIPLGYLNNAEQ----TPLSIAIDSSLTDI 125
+V +L+K G NA+ TPL +A D +I
Sbjct: 94 EIVEVLLK-----YGADVNAQDAYGLTPLHLAADRGHLEI 128
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AA G IV +LKY +
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------A 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 QDAYGLTPLHLAADRGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
DD+G+TPLH A H +V +L+K + + TPL +A D+ +I ++ +
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKH-GADVNARDTDGWTPLHLAADNGHLEIVEVLL-K 101
Query: 133 RPESLNHRLPEELTLLHSAVMR 154
+N + LT LH A R
Sbjct: 102 YGADVNAQDAYGLTPLHLAADR 123
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA G IV +LK+ +
Sbjct: 61 EIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D++G+TPLH A + H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK NG + L I TPLH A H
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLK------NGADVNASDLTGI------TPLHLAAATGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+V +L+K Y N+ TPL +A
Sbjct: 95 IVEVLLKHGADVNAYDNDG-HTPLHLA 120
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVK 97
TD++G TPLH A N H +V +L+K
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLK 68
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA+ G IV +LKY +
Sbjct: 61 EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN------------A 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G+TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 DDTIGSTPLHLAADTGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 21/95 (22%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G+TPLH+AARVG IV +LK NG + + D G+TPLH A + H
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK------NGAD------VNALDFSGSTPLHLAAKRGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSS 121
+V +L+K G NA+ TPL +A D+
Sbjct: 95 IVEVLLK-----YGADVNADDTIGSTPLHLAADTG 124
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 57 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 116
+ NG + E D G+TPLH A R H +V +L+ K+ + L+ + TPL +
Sbjct: 34 MANGADVNAE------DTYGDTPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHL 86
Query: 117 A 117
A
Sbjct: 87 A 87
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA G IV +LKY +
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------A 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D +G TPLH A + H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 MDYQGYTPLHLAAEDGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AAR G IV +LK NG + +
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+D G TPLH A + H +V +L+ K+ + + +T I+ID+ D+A
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
++ G TPLH+AA G IV +LK NG + + D G TPLH A R
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLK------NGAD------VNAKDSLGVTPLHLAARRG 91
Query: 88 HENVVRMLVK 97
H +V +L+K
Sbjct: 92 HLEIVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 17 LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG 76
L +R + +N K ETPLH+AAR G + +L+ + + DD+
Sbjct: 33 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN----------AKAKDDQ- 81
Query: 77 NTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
TPLH A R H N+V++L++ + P A TPL IA
Sbjct: 82 -TPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIA 120
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
W G TPLHIAA+ + ++L+Y G + ES+ +G TPLH A + H
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQY------GGSANAESV------QGVTPLHLAAQEGH 257
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQ-TPLSIAIDSSLTDIACFIIDQ 132
+V +L+ K G L N TPL + +A +I
Sbjct: 258 AEMVALLLSKQAN--GNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 15 NVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD 74
+VL + ++ G TPLH+A+ G+ +V +L++ + T+
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL----------- 343
Query: 75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID---SSLTDIACFIID 131
G +PLH A + H ++V +L+K P +++ TPL+IA S+TD+ + D
Sbjct: 344 -GYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401
Query: 132 Q 132
+
Sbjct: 402 E 402
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 5 LPTTMDHELLNVLRRRD------SLLRKN------NWKGETPLHIAARVGDPAIVSTILK 52
L TT H L++ R +LL K KG TPLH+AA+ G + +L+
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Query: 53 YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT 112
++ P + G TPLH AV + + ++V++L+ + P N T
Sbjct: 168 --------RDAHPNA----AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG-YT 214
Query: 113 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168
PL IA + ++A ++ Q S N + +T LH A ++ + E M+ + L+K
Sbjct: 215 PLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAA-QEGHAE-MVALLLSK 267
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 91
+TPLH AAR+G +V +L+ + P + G+TPLH A R H
Sbjct: 81 QTPLHCAARIGHTNMVKLLLE--------NNANP----NLATTAGHTPLHIAAREGHVET 128
Query: 92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 151
V L++K+ + TPL +A +A +++ R N LT LH A
Sbjct: 129 VLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVA 186
Query: 152 VMRQN 156
V N
Sbjct: 187 VHHNN 191
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH AA G IV +L ++P + D +G TPLH A N H+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKG--------ADPNA----KDSDGRTPLHYAAENGHKE 84
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
+V++L+ K P ++ +TPL A ++ +I ++ +
Sbjct: 85 IVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSK 125
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH AA G IV +L ++P + D +G TPLH A N H+
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKG--------ADPNA----KDSDGRTPLHYAAENGHKE 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
+V++L+ K P ++ +TPL +A + +I + Q
Sbjct: 118 IVKLLLSKGADP-NTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 56 AITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109
A NG + + LL +D +G TPLH A N H+ +V++L+ K P ++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV 152
+TPL A ++ +I ++ + + N + + T LH A
Sbjct: 71 -RTPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAA 111
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G+TPLH+AA G IV +LK NG + +
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
TD G TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G+TPLH+AA G IV +LK+ + D G+TPLH A H
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGADVN------------AADKMGDTPLHLAALYGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS 121
+V +L+ K+ + + TPL +A D+
Sbjct: 95 IVEVLL-KNGADVNATDTYGFTPLHLAADAG 124
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 57 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 97
+ NG + E DD G TPLH A H +V +L+K
Sbjct: 34 MANGADVNAE------DDSGKTPLHLAAIKGHLEIVEVLLK 68
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AA G IV +LKY +
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G+TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 FDMTGSTPLHLAADEGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AA G IV +LKY + N + ++ I
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV-NAQDKFGKTAFDI 152
Query: 72 TDDEGNTPLHNAVRN 86
+ D GN L + RN
Sbjct: 153 SIDNGNEDLAKSCRN 167
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK+ + D G TPLH A H
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKHGADVD------------AADVYGFTPLHLAAMTGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSS 121
+V +L+K + + TPL +A D
Sbjct: 95 IVEVLLKY-GADVNAFDMTGSTPLHLAADEG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L T H E++ VL + + + + G TPLH+AA +G IV +LK+ +
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------ 106
Query: 64 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAID 119
D G+TPLH A H +V +L+K G NA+ +T I+ID
Sbjct: 107 ------NAVDTWGDTPLHLAAIMGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISID 155
Query: 120 SSLTDIA 126
+ D+A
Sbjct: 156 NGNEDLA 162
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK+ + D G+TPLH A H
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADV------------NAIDIXGSTPLHLAALIGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+V +L+K + ++ TPL +A
Sbjct: 95 IVEVLLKHGA-DVNAVDTWGDTPLHLA 120
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L T H E++ VL + + + + G TPLH+AA +G IV +LK+ +
Sbjct: 53 LAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------ 106
Query: 64 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAID 119
D G+TPLH A H +V +L+K G NA+ +T I+ID
Sbjct: 107 ------NAVDTWGDTPLHLAAIMGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISID 155
Query: 120 SSLTDIA 126
+ D+A
Sbjct: 156 NGNEDLA 162
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK+ + D G+TPLH A H
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADV------------NAIDIMGSTPLHLAALIGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+V +L+K + ++ TPL +A
Sbjct: 95 IVEVLLKHGA-DVNAVDTWGDTPLHLA 120
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH AA+ G IV + I+ G + + D +G TPLH A + H+
Sbjct: 37 GRTPLHYAAKEGHKEIVKLL------ISKGAD------VNAKDSDGRTPLHYAAKEGHKE 84
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
+V++L+ K + ++ +TPL A +I +I +
Sbjct: 85 IVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ +L + + + + G TPLH AA+ G IV + I+ G + +
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL------ISKGAD------VNA 98
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
D +G TPLH A + H+ +V++L+ K + ++ +TPL +A + +I +
Sbjct: 99 KDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 132 Q 132
Q
Sbjct: 158 Q 158
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+D +G TPLH A + H+ +V++L+ K + ++ +TPL A +I +I
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLI- 90
Query: 132 QRPESLNHRLPEELTLLHSAV 152
+ +N + + T LH A
Sbjct: 91 SKGADVNAKDSDGRTPLHYAA 111
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH AA G +V + I+ G + + D +G TPLH+A N H+
Sbjct: 37 GRTPLHHAAENGHKEVVKLL------ISKGAD------VNAKDSDGRTPLHHAAENGHKE 84
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132
VV++L+ K + ++ +TPL A ++ ++ +I +
Sbjct: 85 VVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ +L + + + + G TPLH AA G +V + I+ G + +
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL------ISKGAD------VNA 98
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
D +G TPLH+A N H+ VV++L+ K + ++ +TPL +A
Sbjct: 99 KDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLA 143
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+D +G TPLH+A N H+ VV++L+ K + ++ +TPL A ++ ++ +I
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLI- 90
Query: 132 QRPESLNHRLPEELTLLHSAV 152
+ +N + + T LH A
Sbjct: 91 SKGADVNAKDSDGRTPLHHAA 111
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 16 VLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE 75
+L + + N++ G TPLH+AA +G IV +LK NG + + T +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK------NGAD------VNATGNT 79
Query: 76 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
G TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L + H E++ VL + + + G TPLH+AA IV +LK+ + N +
Sbjct: 53 LAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV-NAQDK 111
Query: 64 EPESLLRITDDEGNTPL 80
++ I+ D GN L
Sbjct: 112 FGKTAFDISIDNGNEDL 128
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AA G IV +LK NG + +
Sbjct: 61 EIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
DD G TPLH A H +V +L+K G NA+ +T I+I++ D+A
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLK-----YGADVNAQDKFGKTAFDISINNGNEDLA 162
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK NG + + D G+TPLH A H
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK------NGAD------VNAYDTLGSTPLHLAAHFGHLE 94
Query: 91 VVRMLVK 97
+V +L+K
Sbjct: 95 IVEVLLK 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
N+ KG TPLH+AA IV +LK+ + D++G+TPLH A
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGADVN------------AHDNDGSTPLHLAALF 90
Query: 87 KHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 91 GHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L DH E++ VL + + + ++ G TPLH+AA G IV +LK+ A N +
Sbjct: 53 LAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDK 111
Query: 64 EPESLLRITDDEGNTPL 80
++ I+ D GN L
Sbjct: 112 FGKTAFDISIDNGNEDL 128
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +H AAR G + T+L++ + I D+EGN PLH A + H
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV LVK +G+ N+ T +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
VV++L++ + + +TPL +A + ++ +++
Sbjct: 50 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA++G IV +LKY + D+ G TPLH A H
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVN------------AEDNFGITPLHLAAIRGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
+V +L+K G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L + H E++ VL + + + + G TPLH+AA G IV +LK+ A N +
Sbjct: 53 LAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDK 111
Query: 64 EPESLLRITDDEGNTPL 80
++ I+ D GN L
Sbjct: 112 FGKTAFDISIDNGNEDL 128
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
VV++L++ + + +TPL +A + ++ +++
Sbjct: 50 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 35 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
VV++L++ + + +TPL +A + ++ +++
Sbjct: 83 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +H AAR G + T+L++ + I D+EGN PLH A + H
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV LVK +G+ N+ T +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA G IV +LK NG + +
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D +G TPLH A + + +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK+ + +D G TPLH A H
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVD------------ASDVFGYTPLHLAAYWGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+V +L+ K+ + +++ TPL +A
Sbjct: 95 IVEVLL-KNGADVNAMDSDGMTPLHLA 120
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL R + + + G TPLH+AA +G IV +LKY +
Sbjct: 49 EIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV------------NA 96
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G TPL+ A H +V +L+K G NA+ +T I+ID D+A
Sbjct: 97 KDATGITPLYLAAYWGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDIGNEDLA 150
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA VG IV +L+ NG + + D G TPLH A H
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLR------NGAD------VNAVDTNGTTPLHLAASLGHLE 82
Query: 91 VVRMLVK 97
+V +L+K
Sbjct: 83 IVEVLLK 89
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +H AAR G + T+L++ + I D+EGN PLH A + H
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV LVK +G+ N+ T +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +H AAR G + T+L++ + I D+EGN PLH A + H
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVN------------IEDNEGNLPLHLAAKEGHLR 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV LVK +G+ N+ T +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E + L + +L+ + +G T LH+AA+ G +V +L +NG +
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL------SNGQMD-----VNC 106
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
DD G TP+ A KH ++V++L+ K + +N E L A S DIA
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIA 160
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT-------------------- 72
+PLH AA G I +++ I +E + L+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 73 -DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
D EG+T LH A + H VV+ L+ ++ + ++ TP+ A + D+ ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL- 131
Query: 132 QRPESLNHRLPEELTLLHSAVM 153
+ +N R EE LH A
Sbjct: 132 SKGSDINIRDNEENICLHWAAF 153
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
KN + E PLH AA + D IV +L +G + DD+GNT L+ AV
Sbjct: 57 KNLLENEFPLHQAATLEDTKIVKILL------FSGLDDSQ------FDDKGNTALYYAVD 104
Query: 86 NKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138
+ + V++ VKK+ Y +T A+ + I + + + P + +
Sbjct: 105 SGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFD 157
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 17/105 (16%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
N +GET LHIA+ GD V +L+ NG S+P + D G TPLH A +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ------NG--SDP----NVKDHAGWTPLHEACNHG 54
Query: 88 HENVVRMLVKKDRI--PLGYLNNAEQTPLSIAIDSSLTDIACFII 130
H VV +L++ + GY N+ +PL A + DI ++
Sbjct: 55 HLKVVELLLQHKALVNTTGYQND---SPLHDAAKNGHVDIVKLLL 96
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPA 56
+++ +L + +L+ ++ ++PLH AA+ G IV +L Y +
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +H AAR G + T+L E ++ + I D+EGN PLH A + H
Sbjct: 70 GFAVIHDAARAGFLDTLQTLL------------ENQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
VV LVK +G+ N+ T +A
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPL +AA G IV +LK NG + +
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
D EG+TPLH A H +V +L+ K+ + + +T I+ID+ D+A
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 57 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSI 116
+ NG + E D G TPLH A N H +V +L+ K+ + +++A TPL +
Sbjct: 34 MANGADVNAE------DASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRL 86
Query: 117 A 117
A
Sbjct: 87 A 87
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK NG + + +D G TPLH A + H
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLK------NGAD------VNASDSAGITPLHLAAYDGHLE 86
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+V +L+K Y + A TPL +A
Sbjct: 87 IVEVLLKHGADVNAY-DRAGWTPLHLA 112
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA G IV +LK+ +
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------------NA 100
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVK 97
D G TPLH A + +V +L+K
Sbjct: 101 YDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAI 57
E++ VL + + + + G TPLH+AA G IV +LK+ +
Sbjct: 86 EIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV 131
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
TDD G TPLH A N +V +L+ K+ + ++A TPL +A
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLA 79
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + N+ G TPLH+AA +G IV +LK+ A N + ++ I
Sbjct: 94 EVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG-ADVNAQDKFGKTAFDI 152
Query: 72 TDDEGNTPL 80
+ D GN L
Sbjct: 153 SIDNGNEDL 161
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA G +V +LK NG + +
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK------NGAD------VNA 108
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G TPLH A H +V +L+K G NA+ +T I+ID+ D+A
Sbjct: 109 NDHNGFTPLHLAANIGHLEIVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA G IV +LK NG + + L G TPLH A H
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLK------NGADVNADDSL------GVTPLHLAADRGHLE 94
Query: 91 VVRMLVK 97
VV +L+K
Sbjct: 95 VVEVLLK 101
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 79
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 139
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 80 IAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 138
Query: 140 RLPEELTLLHSAVMRQNYGEPMIFISL 166
E T +H A + N MI I L
Sbjct: 139 Y---EATAMHRAAAKGNL--KMIHILL 160
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
T +H AA G+ ++ IL Y A TN I D EGNTPLH A +
Sbjct: 142 TAMHRAAAKGNLKMIH-ILLYYKASTN-----------IQDTEGNTPLHLACDEERVEEA 189
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIA 117
++LV + + N E+TPL +A
Sbjct: 190 KLLVSQG-ASIYIENKEEKTPLQVA 213
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 89
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 139
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 140 RLPEELTLLHSAVMRQNYGEPMIFISL 166
E T +H A + N MI I L
Sbjct: 138 Y---EATAMHRAAAKGNL--KMIHILL 159
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
T +H AA G+ ++ IL Y A TN I D EGNTPLH A +
Sbjct: 141 TAMHRAAAKGNLKMIH-ILLYYKASTN-----------IQDTEGNTPLHLACDEERVEEA 188
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIA 117
++LV + + N E+TPL +A
Sbjct: 189 KLLVSQG-ASIYIENKEEKTPLQVA 212
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA+ G IV +LK+ + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDSWGRTPLHLAATVGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
+V +L + G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVL-----LEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA VG IV +L+Y + N + ++ I
Sbjct: 61 EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDI 119
Query: 72 TDDEGNTPL 80
+ D GN L
Sbjct: 120 SIDNGNEDL 128
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVK 97
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
TPLH+AA G IV +LK+ G + + +L++ T LH A + H+ VV
Sbjct: 69 TPLHMAASEGHANIVEVLLKH------GADVNAKDMLKM------TALHWATEHNHQEVV 116
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+L+K + + +T I+ID+ D+A
Sbjct: 117 ELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
+W G +PLH+AA+ G + +L+ + T+ + TPLH A
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD------------RTPLHMAASEG 78
Query: 88 HENVVRMLVK 97
H N+V +L+K
Sbjct: 79 HANIVEVLLK 88
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + ++ G TPLH+AA VG IV +L+Y + N + ++ I
Sbjct: 61 EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDI 119
Query: 72 TDDEGNTPL 80
+ D GN L
Sbjct: 120 SIDNGNEDL 128
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA+ G IV +LK+ + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDIWGRTPLHLAATVGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
+V +L + G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVL-----LEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVK 97
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH AA+ G V +L + R D GNTPLH A +N H
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVN----------ARSKD--GNTPLHLAAKNGHAE 56
Query: 91 VVRMLVKK 98
+V++L+ K
Sbjct: 57 IVKLLLAK 64
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA+ G IV +L + R D GNTP H A +N H
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVN----------ARSKD--GNTPEHLAKKNGHHE 89
Query: 91 VVRMLVKK 98
+V++L K
Sbjct: 90 IVKLLDAK 97
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFII---- 130
+GNTPLHNA +N H V+ L+ K + + TPL +A + +I ++
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 131 DQRPESLNHRLPEELT 146
D S + PE L
Sbjct: 67 DVNARSKDGNTPEHLA 82
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
E++ VL + + + + G TPLH+AA VG IV +L+Y + N + ++ I
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV-NAQDKFGKTAFDI 119
Query: 72 TDDEGNTPL 80
+ D GN L
Sbjct: 120 SIDNGNEDL 128
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA+ G IV +LK+ + D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ARDIWGRTPLHLAATVGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
+V +L + G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVL-----LEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVK 97
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 61 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 120
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79
Query: 121 SLTDIACFIID 131
TDI ++D
Sbjct: 80 GYTDIVKMLLD 90
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 83
L N+ G TPLH+A D +V +L+ A A N +PE G TPLH A
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLN----KPEPTC------GRTPLHLA 199
Query: 84 VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 118
V + +V+ +L+K P + +TPL A+
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGG-RTPLGSAL 233
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIACFII 130
+G+TPLH AV +K +VR+L R LN E +TPL +A+++ + ++
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 131 DQRPESLNHRLPEELTLLHSAVMRQN 156
+ R+ T L SA++R N
Sbjct: 213 KAGADPTA-RMYGGRTPLGSALLRPN 237
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNA 83
L N+ G TPLH+A D +V +L+ A A N +PE G TPLH A
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLN----KPEPTC------GRTPLHLA 199
Query: 84 VRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAI 118
V + +V+ +L+K P + +TPL A+
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGG-RTPLGSAL 233
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIACFII 130
+G+TPLH AV +K +VR+L R LN E +TPL +A+++ + ++
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 131 DQRPESLNHRLPEELTLLHSAVMRQN 156
+ R+ T L SA++R N
Sbjct: 213 KAGADPTA-RMYGGRTPLGSALLRPN 237
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 61 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 120
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 19 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 77
Query: 121 SLTDIACFIID 131
TDI ++D
Sbjct: 78 GYTDIVKMLLD 88
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 61 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 120
T E E+++ TD+EG TPL A + VV L++ P L ++ LS+A
Sbjct: 37 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 95
Query: 121 SLTDIACFIID 131
TDI ++D
Sbjct: 96 GYTDIVKMLLD 106
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + GET LH+AAR +L+ A A N I D+ G TPLH
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------IQDNMGRTPLH 95
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
AV + V ++L++ L + TPL +A
Sbjct: 96 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 31 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
G TPL IA+ G S + APA+ + + SL TD G T LH A R
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146
+ + L++ +N +TPL A+ + + +I R L+ R+ + T
Sbjct: 70 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + GET LH+AAR +L+ A A N I D+ G TPLH
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------IQDNMGRTPLH 96
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
AV + V ++L++ L + TPL +A
Sbjct: 97 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 31 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
G TPL IA+ G S + APA+ + + SL TD G T LH A R
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146
+ + L++ +N +TPL A+ + + +I R L+ R+ + T
Sbjct: 71 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + GET LH+AAR +L+ A A N I D+ G TPLH
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADAN-----------IQDNMGRTPLH 63
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
AV + V ++L++ L + TPL +A
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 54 APAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTP 113
APA+ + + SL TD G T LH A R + + L++ +N +TP
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTP 61
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146
L A+ + + +I R L+ R+ + T
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
+++G TPLH+A G A V + + T S+L+ T+ G+T LH A +
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSC------TTPHLHSILKATNYNGHTCLHLASIHG 125
Query: 88 HENVVRMLVKKDRIPLGYLNNAEQ-----TPLSIAIDSSLTDIACFII 130
+ +V +LV LG NA++ T L +A+D D+ ++
Sbjct: 126 YLGIVELLVS-----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
+NN + +TPLH+A P I +L G +PE + D GNTPLH A
Sbjct: 38 QNNLQ-QTPLHLAVITNQPEIAEALL--------GAGCDPE----LRDFRGNTPLHLACE 84
Query: 86 NKHENVVRMLVKKDRIP 102
V +L + P
Sbjct: 85 QGCLASVGVLTQSCTTP 101
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
S+L+ N+ G T LH+A+ G IV ++ + EP + G T LH
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV---NAQEPCN--------GRTALH 153
Query: 82 NAVRNKHENVVRMLVK 97
AV ++ ++V +L+K
Sbjct: 154 LAVDLQNPDLVSLLLK 169
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 74 DEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
++G++ LH A+ ++ + V+R VK D L + NN +QTPL +A+ ++ +IA
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 58
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 5 LPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESE 64
L T D E + L R ++ K + G+T L +A G +V +L
Sbjct: 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA------------ 204
Query: 65 PESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTD 124
E+ + + DD+G+T L A + H+ + +L+ + + T L +A+D+ ++
Sbjct: 205 CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSE 264
Query: 125 IACFI 129
IA +
Sbjct: 265 IASML 269
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPL 114
++ I D GNT LH +V + + VV+ L+ + N A +P+
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPI 149
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 139
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 140 RLPEELTLLHSAVMRQN 156
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
T +H AA G+ +V +L Y A TN I D EGNTPLH A +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFY-KASTN-----------IQDTEGNTPLHLACDEERVEEA 188
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIA 117
+ LV + + N E+TPL +A
Sbjct: 189 KFLVTQG-ASIYIENKEEKTPLQVA 212
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87
+++G TPLH+A G A V + + T S+L+ T+ G+T LH A +
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSC------TTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 88 HENVVRMLVKKDRIPLGYLNNAEQ-----TPLSIAIDSSLTDIACFII 130
+ +V +LV LG NA++ T L +A+D D+ ++
Sbjct: 129 YLGIVELLVS-----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
+NN + +TPLH+A P I +L G +PE + D GNTPLH A
Sbjct: 41 QNNLQ-QTPLHLAVITNQPEIAEALL--------GAGCDPE----LRDFRGNTPLHLACE 87
Query: 86 NKHENVVRMLVKKDRIP 102
V +L + P
Sbjct: 88 QGCLASVGVLTQSCTTP 104
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 70 RITDDEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
++T+D G++ LH A+ ++ + V+R VK D L + NN +QTPL +A+ ++ +I
Sbjct: 3 QLTED-GDSFLHLAIIHEEKALTMEVIRQ-VKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60
Query: 126 A 126
A
Sbjct: 61 A 61
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
S+L+ N+ G T LH+A+ G IV ++ + EP + G T LH
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV---NAQEPCN--------GRTALH 156
Query: 82 NAVRNKHENVVRMLVK 97
AV ++ ++V +L+K
Sbjct: 157 LAVDLQNPDLVSLLLK 172
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L DH E++ VL + + + + GETPLH+ A G IV +LK+ A N +
Sbjct: 53 LAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDK 111
Query: 64 EPESLLRITDDEGNTPL 80
++ I+ D GN L
Sbjct: 112 FGKTAFDISIDNGNEDL 128
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 21/100 (21%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPLH+AA IV +LK NG + + D G TPLH H
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLK------NGAD------VNAIDAIGETPLHLVAMYGHLE 94
Query: 91 VVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
+V +L+K G NA+ +T I+ID+ D+A
Sbjct: 95 IVEVLLKH-----GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + T LH A G IV +L+ + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID--QRPESLNH 139
A + +V+ L+ K + +N TPL A + +IA +++ P++ +H
Sbjct: 79 IAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 140 RLPEELTLLHSAVMRQN 156
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
T +H AA G+ +V +L Y A TN I D EGNTPLH A +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFY-KASTN-----------IQDTEGNTPLHLACDEERVEEA 188
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIA 117
+ LV + + N E+TPL +A
Sbjct: 189 KFLVTQG-ASIYIENKEEKTPLQVA 212
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
+SL TD + T LH A H +V L++ +P+ ++A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEI 88
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + GET LH+AAR +L E + I D+ G TPLH
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADAXIQDNMGRTPLH 60
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
AV + V ++L++ L + TPL +A
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILA 96
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
E+ L DD G +PLH A R VV ML+ + + +N + TPL +A DI
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDI 87
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 22/83 (26%)
Query: 14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD 73
+NV+ R D +TPLH+AA G IV +L+Y I +
Sbjct: 65 INVMNRGD----------DTPLHLAASHGHRDIVQKLLQYKADIN------------AVN 102
Query: 74 DEGNTPLHNAVRNKHENVVRMLV 96
+ GN PLH A + V LV
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLV 125
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +PLH A R G A+V ++ I +++ DD TPLH A + H +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARI---------NVMNRGDD---TPLHLAASHGHRD 86
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+V+ L++ + + +N PL A +A
Sbjct: 87 IVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVA 121
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDI 125
E+ L DD G +PLH A R VV ML+ + + +N + TPL +A DI
Sbjct: 24 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDI 82
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 22/83 (26%)
Query: 14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD 73
+NV+ R D +TPLH+AA G IV +L+Y I +
Sbjct: 60 INVMNRGD----------DTPLHLAASHGHRDIVQKLLQYKADIN------------AVN 97
Query: 74 DEGNTPLHNAVRNKHENVVRMLV 96
+ GN PLH A + V LV
Sbjct: 98 EHGNVPLHYACFWGQDQVAEDLV 120
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +PLH A R G A+V ++ I +++ DD TPLH A + H +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARI---------NVMNRGDD---TPLHLAASHGHRD 81
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+V+ L++ + + +N PL A +A
Sbjct: 82 IVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVA 116
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85
K + G TPL A G +V+ +L++ +I ++++GNT LH AV
Sbjct: 147 KKDLSGNTPLIYACSGGHHELVALLLQHGASIN------------ASNNKGNTALHEAVI 194
Query: 86 NKHENVVRMLV 96
KH VV +L+
Sbjct: 195 EKHVFVVELLL 205
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G +PLH+AA G ++ +LK+ G + +++ PLH A + H
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAV----------PLHLACQQGHFQ 133
Query: 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150
VV+ L+ + P + + TPL A ++ ++ Q S+N + T LH
Sbjct: 134 VVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLL-QHGASINASNNKGNTALHE 191
Query: 151 AVMRQN 156
AV+ ++
Sbjct: 192 AVIEKH 197
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
TPLH A R G ++V ++KY ++P + D EG + +H A + H ++V
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG--------ADPS----LIDGEGCSCIHLAAQFGHTSIV 125
Query: 93 RMLVKKDRIPLGYLNNAEQTPLSIA 117
L+ K + + ++ TPL A
Sbjct: 126 AYLIAKGQ-DVDMMDQNGMTPLMWA 149
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat
Domain
Length = 232
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 13 LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 72
L +L+ + + GET LHIAA + +++ AP + EP +T
Sbjct: 19 LSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV----FEP-----MT 69
Query: 73 DD--EGNTPLHNAVRNKHENVVRMLVKKD 99
+ EG T LH AV N++ N+VR L+ +
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARG 98
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80
G TPLH+AAR G IV +LK A A N + ++ I+ D GN L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDL 83
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 17 LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AITNGT 61
LR+ D+L+ K + +G TPL A+ G+ V +L++ A T G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 62 ES------EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 115
E + + I D G TPL AVR H V L+ + L ++ TP+
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMD 140
Query: 116 IAI 118
+A+
Sbjct: 141 LAV 143
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE----QTPLSIAIDSSLTDIA 126
D G+TPLH A RN H VV++L++ G NA+ +T I+ID+ D+A
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEA-----GADVNAQDKFGKTAFDISIDNGNEDLA 88
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80
G TPLH+AAR G +V +L+ A A N + ++ I+ D GN L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDISIDNGNEDL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
D G+TPLH A RN H VV++L++ + + +T I+ID+ D+A
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLA 106
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80
G TPLH+AAR G +V +L+ A A + ++ I+ D GN L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDL 105
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 93
Query: 93 RMLVKKDRI 101
+LVK +
Sbjct: 94 ELLVKHGAV 102
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 91
Query: 93 RMLVKKDRI 101
+LVK +
Sbjct: 92 ELLVKHGAV 100
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
TPLH AA ++V +L++ + D G PLHNA H V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 95
Query: 93 RMLVK 97
+LVK
Sbjct: 96 ELLVK 100
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 26 KNNWKGETPLHIAARVGD-PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84
+ + G+TPLHIA G+ PA+ + + G E L I ++ TPLH AV
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ---QGGRE------LDIYNNLRQTPLHLAV 54
Query: 85 RNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAID-SSLTDIACFIIDQRPESLN--HRL 141
+VVR+LV P+ L+ QT +A + S T + + P +L+ R
Sbjct: 55 ITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 142 PEELTLLHSAV 152
+ LT LH AV
Sbjct: 114 YDGLTALHVAV 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+DEG T LHNAV H +V+ LV+ + + ++ TPL A + + F+++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+DEG T LHNAV H +V+ LV+ + + ++ TPL A + + F+++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
+ G +P+H AAR G + ++++ + D G+ P+H A+R
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVN------------ALDSTGSLPIHLAIRE 117
Query: 87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
H +VV L + L + + + TPL +A
Sbjct: 118 GHSSVVSFLAPES--DLHHRDASGLTPLELA 146
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD 73
L VL + + + G P+H+A R G ++VS + PES L D
Sbjct: 90 LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL-------------APESDLHHRD 136
Query: 74 DEGNTPLHNAVRNKHENVVRMLVKKDRIPL 103
G TPL A + +N++ +L IP+
Sbjct: 137 ASGLTPLELARQRGAQNLMDILQGHMMIPM 166
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
++ + TPLH+AA IV +L++ + D G PLHNA
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV------------HAKDKGGLVPLHNACSY 101
Query: 87 KHENVVRMLVK 97
H V +L+K
Sbjct: 102 GHYEVTELLLK 112
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRI 71
++ +L R+ + + + N TPLH+AA ++ + K+ + +
Sbjct: 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG------------AKMNA 275
Query: 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 102
D G T LH A H R+L+ P
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86
+ G +P+H AAR G + ++++ + D G+ P+H A+R
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVN------------ALDSTGSLPIHLAIRE 119
Query: 87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
H +VV L + L + + + TPL +A
Sbjct: 120 GHSSVVSFLAPES--DLHHRDASGLTPLELA 148
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD 73
L VL + + + G P+H+A R G ++VS + PES L D
Sbjct: 92 LKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL-------------APESDLHHRD 138
Query: 74 DEGNTPLHNAVRNKHENVVRMLVKKDRIPL 103
G TPL A + +N++ +L IP+
Sbjct: 139 ASGLTPLELARQRGAQNLMDILQGHMMIPM 168
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR-NKHENVV 92
PLH A + V +L P SLL D +G PLH +V HE
Sbjct: 5 PLHQACMENEFFKVQELLHSKP-----------SLLLQKDQDGRIPLHWSVSFQAHEITS 53
Query: 93 RMLVKKDRIPL-GYLNNAEQTPLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELTLLH 149
+L K + + L Y +++ TP IA ++ + D+ +P+ LN + +T LH
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLH 112
Query: 150 SAVMRQNY 157
AV ++ +
Sbjct: 113 LAVGKKWF 120
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 13 LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA--PAITNGTESEP 65
+ N+L +DS G+T L+IAAR+G+ +IV +L Y P I N + P
Sbjct: 272 IANMLNAQDS-------NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 17 LRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP---------------AITNGT 61
LR+ D+L+ K + +G TPL A+ G+ V +L++ A T G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 62 ES------EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 115
E + + I D G TPL AV H V L+ + L ++ TP+
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA-DLTTEADSGYTPMD 140
Query: 116 IAI 118
+A+
Sbjct: 141 LAV 143
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 5 LPTTMDH-ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES 63
L T H E++ VL + + + + G TPLH+AA +G I +LK+ +
Sbjct: 53 LATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN----- 107
Query: 64 EPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 97
D G T ++ N +E++ +L K
Sbjct: 108 -------AQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
G TPL++A G IV +LK NG + + D G TPLH A H
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLK------NGAD------VNAVDAIGFTPLHLAAFIGHLE 94
Query: 91 VVRMLVK 97
+ +L+K
Sbjct: 95 IAEVLLK 101
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR-NKHENVV 92
PLH A + V +L P SLL D +G PLH +V HE
Sbjct: 5 PLHQACMENEFFKVQELLHSKP-----------SLLLQKDQDGRIPLHWSVSFQAHEITS 53
Query: 93 RMLVKKDRIPL-GYLNNAEQTPLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELTLLH 149
+L K + + L Y +++ TP IA ++ + D+ +P+ LN + +T LH
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLH 112
Query: 150 SAVMRQNY 157
AV ++ +
Sbjct: 113 LAVGKKWF 120
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 34 PLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR-NKHENVV 92
PLH A + V +L P SLL D +G PLH +V HE
Sbjct: 5 PLHQACMENEFFKVQELLHSKP-----------SLLLQKDQDGRIPLHWSVSFQAHEITS 53
Query: 93 RMLVKKDRIPL-GYLNNAEQTPLSIAIDSSLTDIACFIIDQ--RPESLNHRLPEELTLLH 149
+L K + + L Y +++ TP IA ++ + D+ +P+ LN + +T LH
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLH 112
Query: 150 SAVMRQNY 157
AV ++ +
Sbjct: 113 LAVGKKWF 120
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLH 81
SL + + G T LH+AA +L+ A A N I D+ G TPLH
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLE-ASADAN-----------IQDNMGRTPLH 95
Query: 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
AV + V ++L++ L + TPL +A
Sbjct: 96 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 31 GETPLHIAARVGDPAIV--STILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
G TPL IA+ G S + APA+ + + SL TD G T LH A
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146
+ + L++ +N +TPL A+ + + +I R L+ R+ + T
Sbjct: 70 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
++ G TPLHNAV+ E++V +L++ P+ N L AI S+ + F+
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL 92
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+ + G TPL AV KH +V+ L++++ I + ++ +T L +A++ L IA
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126
+ + G TPL AV KH +V+ L++++ I + ++ +T L +A++ L IA
Sbjct: 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFI 129
++ G TPLHNAV+ E++V +L++ P+ N + AI S+ + F+
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFL 112
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 32 ETPLHIAARVGDPA---IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
E LH+A +V + A +V I I NG + ++ +GNT LH A
Sbjct: 172 ELVLHLAVKVANQASLPLVDFI------IQNGGHLDAKAA------DGNTALHYAALYNQ 219
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+ +++L+ K R +G +N A +T L IA
Sbjct: 220 PDCLKLLL-KGRALVGTVNEAGETALDIA 247
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 21 DSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT 78
D RK++ +KG T LH AA+V + IV ++ E S D++G T
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNXPIVKYLV-----------GEKGSNKDKQDEDGKT 315
Query: 79 PLHNAVRNKHENVVRMLVKK 98
P+ A + VV L+++
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQ 335
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 13 LLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRIT 72
+++ L + L K KG T LH + + +L+ +I I
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI------------EIA 234
Query: 73 DDEGNTPLHNAVRNKHENVVRMLVK 97
++ G TPL A R KHE+ +L +
Sbjct: 235 NESGETPLDIAKRLKHEHCEELLTQ 259
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 64 EPESLLRITDDEGNTPLHNAVRNK------HENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+PE + I +TPL +A NK ++ + V + G+L A A
Sbjct: 323 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAG-----A 377
Query: 118 IDSSLTDIACFIIDQRPESLNHRLPE-ELTLLHSAVMRQNYGEPMIFISLNKCLSI 172
++++ T +AC+ + P +LN E E L + + Q + FI L
Sbjct: 378 VEAAFTTLACY-YQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGF 432
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 64 EPESLLRITDDEGNTPLHNAVRNK------HENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+PE + I +TPL +A NK ++ + V + G+L A A
Sbjct: 317 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAG-----A 371
Query: 118 IDSSLTDIACFIIDQRPESLNHRLPE-ELTLLHSAVMRQNYGEPMIFISLNKCLSI 172
++++ T +AC+ + P +LN E E L + + Q + FI L
Sbjct: 372 VEAAFTTLACY-YQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTEKRFIGLTNSFGF 426
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 32 ETPLHIAARVGDPA---IVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88
E LH+A +V + A +V I I NG + ++ +GNT LH A
Sbjct: 191 ELVLHLAVKVANQASLPLVDFI------IQNGGHLDAKAA------DGNTALHYAALYNQ 238
Query: 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIA 117
+ +++L+ K R +G +N A +T L IA
Sbjct: 239 PDCLKLLL-KGRALVGTVNEAGETALDIA 266
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLXERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
+P+H AAR G V++++ Y I + +I+ TPL+ A N+ V
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDH----------KISHL--GTPLYLACENQQRACV 206
Query: 93 RMLVKKDR-IPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+ L++ + G + +PL + ++ ++AC ++D
Sbjct: 207 KKLLESGADVNQG---KGQDSPLHAVVRTASEELACLLMD 243
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR--- 85
+ GE PL +AA +VS +L+ +P SL + TD +GNT LH V
Sbjct: 139 YFGELPLSLAACTKQWDVVSYLLE--------NPHQPASL-QATDSQGNTVLHALVXISD 189
Query: 86 NKHENVV 92
N EN+
Sbjct: 190 NSAENIA 196
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 92
+P+H AAR G V++++ Y I + +I+ TPL+ A N+ V
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDH----------KISHL--GTPLYLACENQQRACV 150
Query: 93 RMLVKKDR-IPLGYLNNAEQTPLSIAIDSSLTDIACFIID 131
+ L++ + G + +PL ++ ++AC ++D
Sbjct: 151 KKLLESGADVNQG---KGQDSPLHAVARTASEELACLLMD 187
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 216 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 269
>pdb|1UM2|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 454
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 223 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 276
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167
L + I L+D A F +D R SL R+ E L+ ++ EP + ++N
Sbjct: 212 LGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVN 265
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 44 PAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90
P IV+T AP NGTE E E IT + GN+ L ++ +N
Sbjct: 37 PVIVNTDTLEAPGYVNGTEGEME-YEEITLERGNSGLGFSIAGGTDN 82
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 28 NWKGETPLHIAARVGDPAIVSTILKYAPAIT 58
N +GETPL +A++ G IV +L+ I+
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGADIS 161
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 21/105 (20%)
Query: 13 LLNVLRRRDSLLRKNN-------WKGETPLHIAARVGDPAIVSTILKYAP---AITNG-- 60
LL+V R+ DSL + N +KG+T LHIA + +V+ +++ A NG
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDF 135
Query: 61 ---TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 102
T+ P G PL A +V+ L++ P
Sbjct: 136 FKKTKGRPGFYF------GELPLSLAACTNQLAIVKFLLQNSWQP 174
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 20/106 (18%)
Query: 29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDD-------------E 75
W G+ P+H+A +V +++ A PESLL D+ +
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKE----RGQXPESLLNECDEREVNEIGSHVKHCK 137
Query: 76 GNTPLHNAVRNKHENV--VRMLVKKDRIPLGYLNNAEQTPLSIAID 119
G T LH V E + +++LV+ P + A++TPL A +
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAK-DKADETPLXRAXE 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,114,739
Number of Sequences: 62578
Number of extensions: 200981
Number of successful extensions: 776
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 275
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)