Query 030660
Match_columns 173
No_of_seqs 110 out of 2471
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 3.8E-38 1.3E-42 208.7 17.2 150 8-171 14-163 (169)
2 4b93_B Ankyrin repeat domain-c 100.0 1E-33 3.5E-38 200.4 14.7 148 12-173 67-214 (269)
3 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.8E-33 2E-37 183.8 17.2 145 9-167 25-169 (169)
4 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.7E-33 5.7E-38 184.9 14.4 147 9-169 16-162 (162)
5 1oy3_D Transcription factor in 100.0 2.4E-32 8.2E-37 193.7 18.3 161 10-172 21-253 (282)
6 3v30_A DNA-binding protein rfx 100.0 2.1E-32 7.2E-37 181.4 16.2 150 8-171 12-162 (172)
7 3v31_A Ankyrin repeat family A 100.0 1.9E-32 6.4E-37 180.8 15.0 149 8-170 13-161 (167)
8 3aji_A 26S proteasome non-ATPa 100.0 6.6E-32 2.3E-36 186.6 17.6 149 10-172 52-200 (231)
9 1yyh_A HN1;, notch 1, ankyrin 100.0 5.7E-32 1.9E-36 189.7 16.4 161 10-172 35-218 (253)
10 3b7b_A Euchromatic histone-lys 100.0 2.2E-31 7.5E-36 184.6 19.2 162 9-172 22-205 (237)
11 2rfm_A Putative ankyrin repeat 100.0 2.6E-32 8.8E-37 184.0 14.1 145 10-168 47-191 (192)
12 1d9s_A Cyclin-dependent kinase 100.0 1.5E-32 5E-37 175.8 11.8 134 21-169 2-136 (136)
13 2f8y_A Notch homolog 1, transl 100.0 2.2E-31 7.5E-36 183.1 17.7 159 9-169 36-216 (223)
14 1s70_B 130 kDa myosin-binding 100.0 1.9E-31 6.5E-36 190.8 17.2 150 9-172 51-260 (299)
15 3f6q_A Integrin-linked protein 100.0 5.9E-32 2E-36 180.4 13.4 150 9-172 16-166 (179)
16 1awc_B Protein (GA binding pro 100.0 2.4E-31 8.3E-36 173.2 16.0 140 9-163 13-152 (153)
17 2xai_A ASB-9, ankyrin repeat a 100.0 3.2E-31 1.1E-35 186.7 17.5 159 10-172 15-194 (261)
18 3hra_A Ankyrin repeat family p 100.0 5.3E-31 1.8E-35 178.5 18.0 156 10-167 17-201 (201)
19 2rfa_A Transient receptor pote 100.0 3.7E-31 1.3E-35 183.1 17.4 153 9-170 14-184 (232)
20 1ikn_D Protein (I-kappa-B-alph 100.0 3.6E-32 1.2E-36 188.7 12.0 155 9-171 56-211 (236)
21 4g8k_A 2-5A-dependent ribonucl 100.0 3.4E-31 1.2E-35 192.6 17.6 165 8-172 35-301 (337)
22 2dzn_A Probable 26S proteasome 100.0 5.8E-31 2E-35 181.5 17.6 162 10-172 14-203 (228)
23 1k1a_A B-cell lymphoma 3-encod 100.0 7.8E-31 2.7E-35 182.1 18.3 161 10-172 21-211 (241)
24 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-30 4.2E-35 185.9 18.5 159 10-172 71-250 (285)
25 2xai_A ASB-9, ankyrin repeat a 100.0 7.2E-31 2.5E-35 184.9 16.8 139 30-171 2-161 (261)
26 3twr_A Tankyrase-2; ankyrin re 100.0 2E-31 6.9E-36 175.5 12.9 145 9-168 19-164 (165)
27 2rfa_A Transient receptor pote 100.0 9.5E-31 3.2E-35 181.0 16.9 161 9-171 48-224 (232)
28 2f8y_A Notch homolog 1, transl 100.0 2.2E-30 7.5E-35 178.1 17.6 113 10-136 104-216 (223)
29 1wdy_A 2-5A-dependent ribonucl 100.0 5.4E-30 1.8E-34 181.5 19.2 161 10-172 84-281 (285)
30 1yyh_A HN1;, notch 1, ankyrin 100.0 6.9E-31 2.3E-35 184.2 14.4 124 36-171 28-151 (253)
31 3ljn_A Hypothetical protein; a 100.0 6.4E-31 2.2E-35 193.0 14.7 162 9-172 31-239 (364)
32 4hbd_A KN motif and ankyrin re 100.0 2.4E-30 8.2E-35 183.7 16.7 156 10-167 88-273 (276)
33 4gpm_A Engineered protein OR26 100.0 2.5E-30 8.6E-35 171.1 15.4 126 33-172 6-131 (169)
34 3utm_A Tankyrase-1; tankyrase, 100.0 6.5E-30 2.2E-34 186.0 18.8 98 73-172 208-308 (351)
35 3aji_A 26S proteasome non-ATPa 100.0 9.3E-31 3.2E-35 180.8 13.6 148 9-170 84-231 (231)
36 2etb_A Transient receptor pote 100.0 4.9E-31 1.7E-35 185.0 11.9 160 9-170 57-247 (256)
37 2pnn_A Transient receptor pote 100.0 8.3E-31 2.8E-35 185.5 12.9 161 9-171 68-261 (273)
38 1bd8_A P19INK4D CDK4/6 inhibit 100.0 3.6E-30 1.2E-34 168.0 15.0 142 9-166 13-155 (156)
39 3kea_A K1L; tropism, ANK repea 100.0 6.8E-31 2.3E-35 187.3 12.2 148 10-172 74-223 (285)
40 2rfm_A Putative ankyrin repeat 100.0 2.8E-30 9.5E-35 174.1 14.4 137 22-172 26-162 (192)
41 3jxi_A Vanilloid receptor-rela 100.0 5.8E-31 2E-35 185.0 10.8 161 8-170 59-251 (260)
42 1n11_A Ankyrin; clathrin, BAND 100.0 6.7E-30 2.3E-34 191.6 16.9 161 10-172 191-372 (437)
43 1n0r_A 4ANK, 4 ankyrin repeats 100.0 9.2E-30 3.2E-34 160.1 14.8 126 30-169 1-126 (126)
44 2dzn_A Probable 26S proteasome 100.0 2E-29 6.9E-34 173.7 17.5 140 31-172 2-169 (228)
45 2fo1_E LIN-12 protein; beta-ba 100.0 1.3E-29 4.3E-34 186.9 17.4 158 14-172 149-341 (373)
46 1bi7_B P16INK4A, MTS1, multipl 100.0 1.4E-30 4.8E-35 170.2 10.9 134 24-172 5-139 (156)
47 1k1a_A B-cell lymphoma 3-encod 100.0 2E-29 6.8E-34 175.0 17.1 133 24-170 2-142 (241)
48 1ikn_D Protein (I-kappa-B-alph 100.0 6E-31 2.1E-35 182.5 9.2 148 12-172 22-179 (236)
49 2etb_A Transient receptor pote 100.0 2.9E-30 9.8E-35 181.1 12.5 156 12-170 20-207 (256)
50 3ljn_A Hypothetical protein; a 100.0 4.4E-30 1.5E-34 188.5 13.9 148 9-170 95-270 (364)
51 4b93_B Ankyrin repeat domain-c 100.0 6.8E-31 2.3E-35 185.9 9.1 145 10-168 98-243 (269)
52 1n11_A Ankyrin; clathrin, BAND 100.0 6.2E-29 2.1E-33 186.3 19.7 162 9-172 157-339 (437)
53 1sw6_A Regulatory protein SWI6 100.0 1.8E-30 6.3E-35 188.4 11.0 151 10-173 109-312 (327)
54 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.8E-30 1.3E-34 179.1 11.7 149 9-172 16-167 (239)
55 3kea_A K1L; tropism, ANK repea 100.0 3.8E-29 1.3E-33 178.3 16.3 144 9-170 11-155 (285)
56 2jab_A H10-2-G3; HER2, darpin, 100.0 1.6E-29 5.5E-34 161.6 13.0 126 28-167 11-136 (136)
57 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-28 4.8E-33 174.2 19.0 161 10-172 51-248 (285)
58 2fo1_E LIN-12 protein; beta-ba 100.0 4.4E-29 1.5E-33 184.1 16.4 159 10-170 178-372 (373)
59 3v31_A Ankyrin repeat family A 100.0 5.4E-29 1.9E-33 164.2 15.0 129 30-172 2-130 (167)
60 4g8k_A 2-5A-dependent ribonucl 100.0 9.6E-29 3.3E-33 179.7 17.3 156 10-172 137-329 (337)
61 2vge_A RELA-associated inhibit 100.0 3.4E-30 1.1E-34 178.4 9.1 145 14-172 1-151 (229)
62 3d9h_A CDNA FLJ77766, highly s 100.0 9.7E-29 3.3E-33 176.1 15.1 158 9-171 103-281 (285)
63 3c5r_A BARD-1, BRCA1-associate 100.0 5.5E-30 1.9E-34 163.9 7.4 134 21-169 1-134 (137)
64 3eu9_A Huntingtin-interacting 100.0 6.8E-28 2.3E-32 166.9 18.5 161 9-171 20-204 (240)
65 3jxi_A Vanilloid receptor-rela 100.0 3.3E-29 1.1E-33 176.0 11.3 155 13-170 24-211 (260)
66 3eu9_A Huntingtin-interacting 100.0 2.1E-28 7.4E-33 169.4 15.1 148 10-171 88-237 (240)
67 2pnn_A Transient receptor pote 100.0 1.3E-28 4.3E-33 174.3 14.1 155 14-171 33-220 (273)
68 1oy3_D Transcription factor in 100.0 2.5E-28 8.6E-33 173.0 15.7 148 24-172 2-220 (282)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.3E-28 7.9E-33 161.6 14.5 131 28-172 11-141 (169)
70 1awc_B Protein (GA binding pro 100.0 1.8E-28 6.2E-33 159.6 13.7 126 32-172 3-128 (153)
71 3b7b_A Euchromatic histone-lys 100.0 9.2E-28 3.1E-32 166.4 17.6 149 23-172 3-172 (237)
72 3twr_A Tankyrase-2; ankyrin re 100.0 2.3E-28 7.9E-33 160.9 13.3 133 27-172 4-136 (165)
73 3utm_A Tankyrase-1; tankyrase, 100.0 1.3E-27 4.5E-32 173.9 18.6 150 9-172 69-275 (351)
74 3v30_A DNA-binding protein rfx 100.0 6.2E-28 2.1E-32 159.8 14.6 129 31-172 2-130 (172)
75 3t8k_A Uncharacterized protein 100.0 3.4E-29 1.1E-33 168.2 7.7 147 10-172 18-182 (186)
76 3f6q_A Integrin-linked protein 100.0 9.9E-28 3.4E-32 159.9 14.6 131 29-172 3-133 (179)
77 1s70_B 130 kDa myosin-binding 100.0 1.7E-27 5.8E-32 170.3 13.7 153 9-164 84-284 (299)
78 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.4E-27 4.7E-32 156.6 12.1 126 30-170 4-129 (162)
79 3ehr_A Osteoclast-stimulating 99.9 2.9E-28 1E-32 167.7 7.9 134 25-172 67-201 (222)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.3E-27 4.4E-32 166.3 9.5 130 28-172 2-131 (239)
81 3aaa_C Myotrophin, protein V-1 99.9 3.1E-27 1.1E-31 148.4 9.1 116 27-156 3-118 (123)
82 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.9E-26 6.5E-31 150.3 13.0 126 31-172 2-128 (156)
83 3hra_A Ankyrin repeat family p 99.9 1.9E-25 6.6E-30 151.1 16.9 143 29-171 3-172 (201)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 7E-27 2.4E-31 152.6 9.0 128 9-151 23-151 (156)
85 2vge_A RELA-associated inhibit 99.9 4.5E-28 1.5E-32 167.7 2.9 141 9-163 32-207 (229)
86 3deo_A Signal recognition part 99.9 5E-27 1.7E-31 157.1 7.6 126 28-168 41-167 (183)
87 1sw6_A Regulatory protein SWI6 99.9 5.5E-27 1.9E-31 170.1 8.4 133 9-155 142-327 (327)
88 3ui2_A Signal recognition part 99.9 5.3E-26 1.8E-30 158.7 9.8 126 28-168 42-184 (244)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 7E-25 2.4E-29 139.9 13.7 112 9-133 25-136 (136)
90 3lvq_E ARF-GAP with SH3 domain 99.9 4E-25 1.4E-29 168.4 14.7 134 31-172 132-268 (497)
91 1dcq_A PYK2-associated protein 99.9 5.1E-25 1.7E-29 156.4 14.2 132 31-170 130-264 (278)
92 1d9s_A Cyclin-dependent kinase 99.9 1.9E-25 6.7E-30 142.5 9.2 111 9-133 23-134 (136)
93 2b0o_E UPLC1; arfgap, structur 99.9 2.1E-25 7.1E-30 160.1 10.4 127 10-156 163-298 (301)
94 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7.3E-25 2.5E-29 131.1 10.7 93 75-169 1-93 (93)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-24 5.1E-29 155.6 12.4 132 31-170 151-285 (301)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.9E-24 2.3E-28 133.1 13.8 112 9-133 13-124 (126)
97 3jue_A Arfgap with coiled-coil 99.9 1.6E-24 5.4E-29 159.1 12.0 125 30-168 198-325 (368)
98 3deo_A Signal recognition part 99.9 3.7E-24 1.3E-28 143.1 11.3 126 9-166 55-181 (183)
99 2l6b_A NR1C; ankyrin, consensu 99.9 6.2E-24 2.1E-28 131.7 10.1 109 26-148 4-112 (115)
100 3t8k_A Uncharacterized protein 99.9 6.1E-25 2.1E-29 147.4 5.7 127 31-173 6-150 (186)
101 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.9E-23 1E-27 124.0 12.0 91 30-133 1-91 (93)
102 2aja_A Ankyrin repeat family p 99.9 1.9E-25 6.6E-30 164.4 0.8 131 28-169 89-224 (376)
103 3lvq_E ARF-GAP with SH3 domain 99.9 4.5E-23 1.5E-27 157.2 13.4 119 8-140 142-269 (497)
104 2aja_A Ankyrin repeat family p 99.9 5.1E-26 1.7E-30 167.5 -2.9 143 9-170 103-251 (376)
105 3c5r_A BARD-1, BRCA1-associate 99.9 4.9E-23 1.7E-27 131.4 11.3 100 71-172 5-104 (137)
106 3ehr_A Osteoclast-stimulating 99.9 3.2E-23 1.1E-27 142.4 9.0 122 9-144 84-206 (222)
107 3aaa_C Myotrophin, protein V-1 99.9 1.1E-22 3.9E-27 127.4 10.7 99 72-172 3-101 (123)
108 2l6b_A NR1C; ankyrin, consensu 99.9 3.6E-23 1.2E-27 128.2 8.0 99 71-171 4-102 (115)
109 3jue_A Arfgap with coiled-coil 99.9 2.7E-22 9.2E-27 147.3 13.2 149 9-170 211-365 (368)
110 4hbd_A KN motif and ankyrin re 99.9 5.2E-22 1.8E-26 140.8 13.4 114 7-133 159-273 (276)
111 1dcq_A PYK2-associated protein 99.9 1.2E-21 4.1E-26 139.1 14.7 113 8-133 140-261 (278)
112 3ui2_A Signal recognition part 99.9 4.9E-21 1.7E-25 133.5 11.8 110 9-132 56-182 (244)
113 2zgd_A 3 repeat synthetic anky 99.8 8.1E-21 2.8E-25 116.8 9.0 94 68-163 16-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 4.5E-20 1.6E-24 113.4 10.0 94 23-129 16-109 (110)
115 3zrh_A Ubiquitin thioesterase 57.9 18 0.00061 27.0 4.7 67 32-98 21-91 (454)
116 1gp8_A Protein (scaffolding pr 52.0 6.6 0.00022 18.3 1.1 19 148-166 17-35 (40)
117 3zrh_A Ubiquitin thioesterase 39.7 70 0.0024 23.9 5.4 25 30-54 68-92 (454)
118 3qil_A Clathrin heavy chain 1; 34.6 16 0.00054 22.2 1.2 29 137-165 28-56 (125)
119 3eyi_A Z-DNA-binding protein 1 24.6 83 0.0028 16.9 2.8 31 3-42 5-35 (72)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.8e-38 Score=208.74 Aligned_cols=150 Identities=23% Similarity=0.319 Sum_probs=139.2
Q ss_pred cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
.-+.+++++|++.|++++.+|..|+||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus 14 ~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~------------~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 14 NGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV------------NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch------------hhhccCCCCHHHHHHHcC
Confidence 35789999999999999999999999999999999999999999999885 467889999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
+.+++++|++.|+++ +.++..|+||||+|++.++.+++++|+++| ++++..|..|+|||++|+..|+.+++++|+++|
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999998 889999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccC
Q 030660 168 KCLS 171 (173)
Q Consensus 168 ~~~~ 171 (173)
|++.
T Consensus 160 A~ie 163 (169)
T 4gpm_A 160 GWLE 163 (169)
T ss_dssp ----
T ss_pred CCcC
Confidence 9875
No 2
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=200.37 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=130.9
Q ss_pred HHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHH
Q 030660 12 ELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 91 (173)
Q Consensus 12 ~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 91 (173)
+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.++++ ...+..|.||+|.|+..++.++
T Consensus 67 ~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~------------~~~~~~g~t~l~~a~~~~~~~~ 134 (269)
T 4b93_B 67 KRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA------------GARNADQAVPLHLACQQGHFQV 134 (269)
T ss_dssp --------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc------------CccCCCCCCccccccccChHHH
Confidence 4788999999999999999999999999999999999999999885 4567789999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660 92 VRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS 171 (173)
Q Consensus 92 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~ 171 (173)
+++|++.|+++ +.++..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 135 ~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~ 212 (269)
T 4b93_B 135 VKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ 212 (269)
T ss_dssp HHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred HHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999988 888999999999999999999999999999 9999999999999999999999999999999999987
Q ss_pred CC
Q 030660 172 IV 173 (173)
Q Consensus 172 ~~ 173 (173)
++
T Consensus 213 ~~ 214 (269)
T 4b93_B 213 VL 214 (269)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 3
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=5.8e-33 Score=183.79 Aligned_cols=145 Identities=23% Similarity=0.245 Sum_probs=137.2
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~ 92 (169)
T 2y1l_E 25 GRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV------------NAVDHAGMTPLRLAALFGH 92 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCC
Confidence 4688999999999999999999999999999999999999999999874 4577889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
.+++++|++.|+++ +..+..|.||||.|+..++.+++++|++++ ++++..|..|.||+++|+..|+.+++++|+++|
T Consensus 93 ~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 93 LEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999988 888999999999999999999999999999 999999999999999999999999999999986
No 4
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=1.7e-33 Score=184.92 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=136.4
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++..+..|+||||+|+. |+.+++++|++.|+++ +..+..|.||||+|+..++
T Consensus 16 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 16 GDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP------------DLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp TCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence 46889999999999999999999999999999 9999999999999875 4577899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++++..++..+..|.||||+|+..|+.+++++|+++||
T Consensus 83 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 83 LDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999988 88899999999999999999999999999944479999999999999999999999999999998
Q ss_pred c
Q 030660 169 C 169 (173)
Q Consensus 169 ~ 169 (173)
+
T Consensus 162 d 162 (162)
T 1ihb_A 162 G 162 (162)
T ss_dssp -
T ss_pred C
Confidence 6
No 5
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-32 Score=193.69 Aligned_cols=161 Identities=22% Similarity=0.251 Sum_probs=129.2
Q ss_pred hHHHHHHHHhcccc---hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------
Q 030660 10 DHELLNVLRRRDSL---LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------- 65 (173)
+.+++++|++.|.+ ++.++..|+||||+|+..|+.+++++|+++|++++.....+.
T Consensus 21 ~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 100 (282)
T 1oy3_D 21 HEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100 (282)
T ss_dssp CHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSS
T ss_pred CHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhcc
Confidence 45566666666655 556666666666666666666666666666666654443332
Q ss_pred -----------------------------------------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660 66 -----------------------------------------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK 98 (173)
Q Consensus 66 -----------------------------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 98 (173)
+..++..+..|.||||+|+..|+.+++++|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 180 (282)
T 1oy3_D 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180 (282)
T ss_dssp CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 012455678899999999999999999999999
Q ss_pred CCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 99 DRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 99 ~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|+++ +..+ ..|.||||+|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 181 g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 253 (282)
T 1oy3_D 181 GADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253 (282)
T ss_dssp TCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC
T ss_pred CCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCc
Confidence 9998 5555 45999999999999999999999999 99999999999999999999999999999999999875
No 6
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=2.1e-32 Score=181.40 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=140.1
Q ss_pred cchHHHHHHHHhcccc-hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660 8 TMDHELLNVLRRRDSL-LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~ 86 (173)
.-+.++++++++.+.. ++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus 12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP------------HILAKERESALSLASTG 79 (172)
T ss_dssp TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TCCCTTCCCHHHHHHHT
T ss_pred cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc------------hhhcccCCCHHHHHHHC
Confidence 3467899999998876 8889999999999999999999999999999885 45778899999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660 87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL 166 (173)
Q Consensus 87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~ 166 (173)
++.+++++|++.++++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.|||++|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999988 888999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccccC
Q 030660 167 NKCLS 171 (173)
Q Consensus 167 ~~~~~ 171 (173)
|+++.
T Consensus 158 ~~~~~ 162 (172)
T 3v30_A 158 ILKLF 162 (172)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 98754
No 7
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=1.9e-32 Score=180.84 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=140.0
Q ss_pred cchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 8 TMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
.-+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..+
T Consensus 13 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP------------QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcC
Confidence 34688999999999999999999999999999999999999999999875 456788999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
+.+++++|++.++++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|++++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 81 YTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999998 888999999999999999999999999999 999999999999999999999999999999988
Q ss_pred ccc
Q 030660 168 KCL 170 (173)
Q Consensus 168 ~~~ 170 (173)
+..
T Consensus 159 ~~~ 161 (167)
T 3v31_A 159 LKL 161 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=6.6e-32 Score=186.61 Aligned_cols=149 Identities=22% Similarity=0.298 Sum_probs=128.2
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 89 (173)
+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.
T Consensus 52 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~ 119 (231)
T 3aji_A 52 HTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV------------NAVNQNGCTPLHYAASKNRH 119 (231)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCH
T ss_pred cHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCCH
Confidence 567777777777777777777777777777777777777777777664 45678899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660 90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 169 (173)
Q Consensus 90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~ 169 (173)
+++++|++.|.++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 120 ~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 120 EIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 9999999999888 778889999999999999999999999988 88999999999999999999999999999999998
Q ss_pred cCC
Q 030660 170 LSI 172 (173)
Q Consensus 170 ~~~ 172 (173)
+++
T Consensus 198 ~~~ 200 (231)
T 3aji_A 198 IYI 200 (231)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 9
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.7e-32 Score=189.69 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=113.9
Q ss_pred hHHHHHHHHhcccchhcc-CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------C
Q 030660 10 DHELLNVLRRRDSLLRKN-NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------E 66 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------~ 66 (173)
+.+++++|++.|.+++.. +..|+||||+|+..|+.+++++|++.|++++.....+. .
T Consensus 35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 114 (253)
T 1yyh_A 35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114 (253)
T ss_dssp -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 556666666666665443 56666666666666666666666666666554444332 1
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660 67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146 (173)
Q Consensus 67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 146 (173)
..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.|
T Consensus 115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t 192 (253)
T 1yyh_A 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREET 192 (253)
T ss_dssp SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence 134566778889999999989889999999988887 778888999999999999999999999888 888888889999
Q ss_pred HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 147 LLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 147 ~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|||+|+..|+.+++++|+++|+++++
T Consensus 193 pL~~A~~~~~~~~v~~Ll~~ga~~~~ 218 (253)
T 1yyh_A 193 PLFLAAREGSYETAKVLLDHFANRDI 218 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCccc
Confidence 99999999999999999999988765
No 10
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.2e-31 Score=184.64 Aligned_cols=162 Identities=21% Similarity=0.209 Sum_probs=138.6
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C-
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E- 66 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~- 66 (173)
-+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|++++.....+. +
T Consensus 22 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 101 (237)
T 3b7b_A 22 GHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101 (237)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 357788899999988888888899999999999999999999998888766554443 1
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660 67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146 (173)
Q Consensus 67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 146 (173)
..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.|
T Consensus 102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t 179 (237)
T 3b7b_A 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDS 179 (237)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT-CCTTCCCTTCCC
T ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCC
Confidence 345567778899999999999999999999998888 778888999999999999999999999888 889888999999
Q ss_pred HHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 147 LLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 147 ~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|||+|+..|+.+++++|+++|+++++
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~~gad~~~ 205 (237)
T 3b7b_A 180 PLHIAARENRYDCVVLFLSRDSDVTL 205 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred HHHHHHHhCCHhHHHHHHHcCCCCCc
Confidence 99999999999999999999998865
No 11
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=2.6e-32 Score=184.03 Aligned_cols=145 Identities=19% Similarity=0.170 Sum_probs=127.2
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 89 (173)
+.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.
T Consensus 47 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~ 114 (192)
T 2rfm_A 47 MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV------------NTKDFSGKTPLMWSIIFGYS 114 (192)
T ss_dssp CGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHHTCH
T ss_pred CHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHcCCH
Confidence 456788888888888888888999999999999999999999988774 45677889999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|+..|+.+++++|+++|.
T Consensus 115 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 115 EMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191 (192)
T ss_dssp HHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence 9999999998888 788888999999999999999999999888 8888888999999999999999999999988764
No 12
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=100.00 E-value=1.5e-32 Score=175.78 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=126.6
Q ss_pred ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660 21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR 100 (173)
Q Consensus 21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 100 (173)
+.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+. ++.+++++|++.++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~ 68 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP------------NALNRFGRRPIQVMMM-GSAQVAELLLLHGA 68 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc------------CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence 4678899999999999999999999999999999875 4577899999999999 99999999999999
Q ss_pred CCCCCCCCC-CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660 101 IPLGYLNNA-EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 169 (173)
Q Consensus 101 ~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~ 169 (173)
++ +..+.. |.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus 69 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 69 EP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CS-SCCBTTTTBCHHHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 98 888888 999999999999999999999999 99999999999999999999999999999999986
No 13
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.2e-31 Score=183.08 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=92.2
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------C
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP---------------------E 66 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~---------------------~ 66 (173)
-+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.++ +++.....+. +
T Consensus 36 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 115 (223)
T 2f8y_A 36 SRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115 (223)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence 35778888888888888888888888888888888888888888876 3322222111 2
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCc
Q 030660 67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELT 146 (173)
Q Consensus 67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 146 (173)
..++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||+|.|+..++.+++++|++++ ++++..+..|.|
T Consensus 116 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t 193 (223)
T 2f8y_A 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRL 193 (223)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCC
T ss_pred CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCC
Confidence 222334444555555555555555555555554444 444444555555555555555555555554 445545555555
Q ss_pred HHHHHHHhCCCcHHHHHHhcccc
Q 030660 147 LLHSAVMRQNYGEPMIFISLNKC 169 (173)
Q Consensus 147 ~l~~a~~~~~~~~~~~ll~~~~~ 169 (173)
|+++|+..++.+++++|+++|+.
T Consensus 194 ~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 194 PRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHhcchHHHHHHHHcCCC
Confidence 55555555555555555555443
No 14
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=1.9e-31 Score=190.76 Aligned_cols=150 Identities=23% Similarity=0.231 Sum_probs=137.5
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus 51 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI------------NQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp TCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHHHcCC
Confidence 4788999999999999999999999999999999999999999999885 4577889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCC------------------------------------------------------------C
Q 030660 89 ENVVRMLVKKDRIPLGYLN------------------------------------------------------------N 108 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~------------------------------------------------------------~ 108 (173)
.+++++|++.|+++ +..+ .
T Consensus 119 ~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (299)
T 1s70_B 119 LDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK 197 (299)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred HHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence 99999999998776 3333 3
Q ss_pred CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 109 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 109 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
.|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus 198 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~ 260 (299)
T 1s70_B 198 SGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260 (299)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence 5788999999999999999999999 99999999999999999999999999999999999875
No 15
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.98 E-value=5.9e-32 Score=180.42 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=140.8
Q ss_pred chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++. +.+++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..+
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI------------NVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp TCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcC
Confidence 467889999987 6789999999999999999999999999999999885 457788999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..|.||+++|+..++.+++++|+++|
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998 888999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccCC
Q 030660 168 KCLSI 172 (173)
Q Consensus 168 ~~~~~ 172 (173)
++++.
T Consensus 162 ~~~~~ 166 (179)
T 3f6q_A 162 QNLNR 166 (179)
T ss_dssp CCCSC
T ss_pred cCccc
Confidence 99864
No 16
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.98 E-value=2.4e-31 Score=173.24 Aligned_cols=140 Identities=19% Similarity=0.270 Sum_probs=131.4
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++ .+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++
T Consensus 13 g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 13 GQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR------------DARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp TCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCTTCCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHcCh
Confidence 46889999999999876 5888999999999999999999999999875 4577889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF 163 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l 163 (173)
.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999998 888999999999999999999999999999 99999999999999999999999999987
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.98 E-value=3.2e-31 Score=186.71 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=124.1
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL 68 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~ 68 (173)
+.+++++|++.|.+++..+..|+||||+|+..|+.+++++|++.|++++.....+. +..
T Consensus 15 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 94 (261)
T 2xai_A 15 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94 (261)
T ss_dssp CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 56777777777777777777778888888877888888888877777665444442 111
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660 69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 148 (173)
Q Consensus 69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 148 (173)
++ .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||.|+..++.+++++|+++| ++++. +..|.|||
T Consensus 95 ~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~~g~t~L 170 (261)
T 2xai_A 95 VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPL 170 (261)
T ss_dssp SS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHT-CCTTC-CBTTBCHH
T ss_pred CC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCC-CCCCCChH
Confidence 11 2445888888888888888888888888877 777888888888888888888888888888 78874 77888888
Q ss_pred HHHHHhCCCcHHHHHHhcccccCC
Q 030660 149 HSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 149 ~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|+|+..|+.+++++|+++|+++++
T Consensus 171 h~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 171 HAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 888888888888888888888765
No 18
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=5.3e-31 Score=178.50 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=89.1
Q ss_pred hHHHHHHHHhccc-chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC----------------------C
Q 030660 10 DHELLNVLRRRDS-LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------E 66 (173)
Q Consensus 10 ~~~~~~~l~~~g~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------~ 66 (173)
+.+.++.+++.+. +++..+..|+||||+|+..|+.+++++|++.|++++.....+. +
T Consensus 17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 96 (201)
T 3hra_A 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96 (201)
T ss_dssp CHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 4566666666655 7777777777888888877888888888877777543222211 1
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHhcCc-----HHHHHHHHhcCCCccccc
Q 030660 67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSL-----TDIACFIIDQRPESLNHR 140 (173)
Q Consensus 67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~ 140 (173)
..++..+..|.||||+|+..++.+++++|++.+ .++ +..+..|.||||.|+..++ .+++++|+++| ++++..
T Consensus 97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~g-a~~~~~ 174 (201)
T 3hra_A 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIK 174 (201)
T ss_dssp CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTT-CCTTCC
T ss_pred cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCC-CCCCcc
Confidence 122334445555555555555555555555555 333 4455555555555555444 55555555555 555555
Q ss_pred CCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 141 LPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 141 ~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
|..|.||||+|+..|+.+++++|+++|
T Consensus 175 ~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 175 DNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 555555555555555555555555544
No 19
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.98 E-value=3.7e-31 Score=183.05 Aligned_cols=153 Identities=24% Similarity=0.254 Sum_probs=138.5
Q ss_pred chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++. |.+++.++..|+||||+|+..|+.+++++|++.|++..... ....+..|.||||+|+..|
T Consensus 14 g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~~ 86 (232)
T 2rfa_A 14 NDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEP-------MTSELYEGQTALHIAVINQ 86 (232)
T ss_dssp TCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------CCSTTTTTCCHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcccc-------ccccCCCCcCHHHHHHHcC
Confidence 467899999997 99999999999999999999999999999999998753211 1356778999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCC-------------CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660 88 HENVVRMLVKKDRIPLGYLNN-------------AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 154 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 154 (173)
+.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..
T Consensus 87 ~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~L~~A~~~ 164 (232)
T 2rfa_A 87 NVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQ 164 (232)
T ss_dssp CHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTC
T ss_pred CHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHc
Confidence 999999999999888 55544 7999999999999999999999999 99999999999999999999
Q ss_pred CCCcHH----HHHHhccccc
Q 030660 155 QNYGEP----MIFISLNKCL 170 (173)
Q Consensus 155 ~~~~~~----~~ll~~~~~~ 170 (173)
|+.+++ ++|+++|++.
T Consensus 165 ~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 165 PNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCHHHHHHHHHHHHHTTCSC
T ss_pred CChHHHHHHHHHHHhcCCch
Confidence 999988 9999999976
No 20
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.98 E-value=3.6e-32 Score=188.75 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=138.6
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.++++... ..++..+..|.||||+|+..|+
T Consensus 56 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~~~~~g~t~L~~A~~~~~ 129 (236)
T 1ikn_D 56 NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH------SILKATNYNGHTCLHLASIHGY 129 (236)
T ss_dssp TCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSS------CGGGCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHH------HHhhccCCCCCCHHHHHHHcCC
Confidence 3578899999999999999999999999999999999999999998764321 2245678889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 89 ENVVRMLVKKDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|+++| ++++..+..|.|||++|+..|+.+++++|+++|
T Consensus 130 ~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g 207 (236)
T 1ikn_D 130 LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207 (236)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence 99999999999988 77776 8999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccC
Q 030660 168 KCLS 171 (173)
Q Consensus 168 ~~~~ 171 (173)
++..
T Consensus 208 a~~~ 211 (236)
T 1ikn_D 208 LENL 211 (236)
T ss_dssp CGGG
T ss_pred hhhh
Confidence 9753
No 21
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.98 E-value=3.4e-31 Score=192.65 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=133.9
Q ss_pred cchHHHHHHHHhcccchhccCCC-CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------
Q 030660 8 TMDHELLNVLRRRDSLLRKNNWK-GETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------- 65 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------- 65 (173)
.-++++|++|+++|+++|.++.. |+||||+|+..|+.++|++|+++|++++.....+.
T Consensus 35 ~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T 4g8k_A 35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK 114 (337)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhc
Confidence 34789999999999999998764 99999999999999999999999998765443332
Q ss_pred ---------------------------------Ccc----------ccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCC
Q 030660 66 ---------------------------------ESL----------LRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRI 101 (173)
Q Consensus 66 ---------------------------------~~~----------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~ 101 (173)
+.. ....+..|.||||+|+..|+.+++++|++. |++
T Consensus 115 ~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad 194 (337)
T 4g8k_A 115 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194 (337)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence 111 112345678899999988888888877753 433
Q ss_pred CC------------------------------------CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC
Q 030660 102 PL------------------------------------GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL 145 (173)
Q Consensus 102 ~~------------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 145 (173)
+. +.++..|.||||.|+..++.+++++|++..+++++..|..|+
T Consensus 195 ~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~ 274 (337)
T 4g8k_A 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 274 (337)
T ss_dssp TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSC
T ss_pred cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCC
Confidence 31 445567889999999999999999999865489999999999
Q ss_pred cHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 146 TLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 146 t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
||||+|+..|+.+++++|+++|++++.
T Consensus 275 TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 275 TALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp BHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 999999999999999999999999875
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.98 E-value=5.8e-31 Score=181.46 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=118.6
Q ss_pred hHHHHHHHHhcccchhc-cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccC--C-CCCCCC--------------------
Q 030660 10 DHELLNVLRRRDSLLRK-NNWKGETPLHIAARVGDPAIVSTILKYAPAIT--N-GTESEP-------------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~-~~~~~~-------------------- 65 (173)
+.+++++|++.+.++.. .+..|+||||+|+..|+.+++++|++.|++.+ . ....+.
T Consensus 14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 93 (228)
T 2dzn_A 14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93 (228)
T ss_dssp CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 34455555554444332 44555555555555555555555555552221 1 111111
Q ss_pred -C--ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC
Q 030660 66 -E--SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP 142 (173)
Q Consensus 66 -~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~ 142 (173)
+ ..++..+..|.||||.|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.++++++..|.
T Consensus 94 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~ 172 (228)
T 2dzn_A 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172 (228)
T ss_dssp SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence 1 234566788999999999999999999999999888 888889999999999999999999999988788999999
Q ss_pred CCCcHHHHHHHhCCCcHHHHHH-hcccccCC
Q 030660 143 EELTLLHSAVMRQNYGEPMIFI-SLNKCLSI 172 (173)
Q Consensus 143 ~g~t~l~~a~~~~~~~~~~~ll-~~~~~~~~ 172 (173)
.|.||||+|+..|+.+++++|+ ++|+++++
T Consensus 173 ~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999 88998875
No 23
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.98 E-value=7.8e-31 Score=182.11 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=127.0
Q ss_pred hHHHHHHHHh----cccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------
Q 030660 10 DHELLNVLRR----RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-------------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-------------------- 65 (173)
+.+++++|++ .|.+++..+..|+||||+|+..|+.+++++|++.|++++.....+.
T Consensus 21 ~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 21 NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455555544 5556666666666666666666666666666666655554433332
Q ss_pred -C----ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc
Q 030660 66 -E----SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN-NAEQTPLSIAIDSSLTDIACFIIDQRPESLNH 139 (173)
Q Consensus 66 -~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~ 139 (173)
+ ..++..+..|.||||+|+..++.+++++|++.|+++ +..+ ..|.||+|.|+..++.+++++|+++| ++++.
T Consensus 101 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~ 178 (241)
T 1k1a_A 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNA 178 (241)
T ss_dssp HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCC
Confidence 1 134567788999999999999999999999999988 5556 78999999999999999999999999 99999
Q ss_pred cCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 140 RLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 140 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
.+..|.||||+|+..|+.+++++|+++|+++++
T Consensus 179 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 179 QMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999875
No 24
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=185.92 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=126.6
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL 68 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~ 68 (173)
+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|++++.....+. +..
T Consensus 71 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 150 (285)
T 3d9h_A 71 HQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150 (285)
T ss_dssp CHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC
Confidence 56788888888888888888888888888888888888888888887765554443 111
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660 69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 148 (173)
Q Consensus 69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 148 (173)
++ .+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..++.+++++|++.+ ++++. +..|.|||
T Consensus 151 ~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L 226 (285)
T 3d9h_A 151 VQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPL 226 (285)
T ss_dssp SS-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHH
T ss_pred CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHH
Confidence 22 2345788888888888888888888888877 777888888888888888888888888888 77774 77888888
Q ss_pred HHHHHhCCCcHHHHHHhcccccCC
Q 030660 149 HSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 149 ~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|+|+..|+.+++++|+++|+++++
T Consensus 227 ~~A~~~~~~~~v~~Ll~~gad~~~ 250 (285)
T 3d9h_A 227 HAVVRTASEELACLLMDFGADTQA 250 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCC
Confidence 888888888888888888888765
No 25
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=184.87 Aligned_cols=139 Identities=16% Similarity=0.122 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------CccccccCCCCCcHHHHHHhcCC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
.|+||||+|+..|+.+++++|++.|++++.....+. +..++..+..|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 589999999999999999999999988765444442 33344555566666666666666
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
.+++++|++.|+++ +. +..|.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 82 ~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 158 (261)
T 2xai_A 82 WDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158 (261)
T ss_dssp HHHHHHHHHTTCCS-SC-SCTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 66666666666555 22 334666666666666666666666666 6666666666666666666666666666666666
Q ss_pred ccC
Q 030660 169 CLS 171 (173)
Q Consensus 169 ~~~ 171 (173)
+++
T Consensus 159 ~~~ 161 (261)
T 2xai_A 159 DVN 161 (261)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 26
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=2e-31 Score=175.55 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=132.6
Q ss_pred chHHHHHHHHh-cccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRR-RDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++ .+.+++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..+
T Consensus 19 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 19 GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp TCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC------------CccCCCCCCHHHHHHHcC
Confidence 46788999987 56678888889999999999999999999999999875 467788999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|.. |+.+++++|+++|
T Consensus 87 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 87 HYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred cHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 999999999999998 888999999999999999999999999999 9999999999999999877 8999999999998
Q ss_pred c
Q 030660 168 K 168 (173)
Q Consensus 168 ~ 168 (173)
|
T Consensus 164 A 164 (165)
T 3twr_A 164 A 164 (165)
T ss_dssp -
T ss_pred c
Confidence 6
No 27
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=9.5e-31 Score=180.98 Aligned_cols=161 Identities=19% Similarity=0.124 Sum_probs=139.2
Q ss_pred chHHHHHHHHhcccch-----hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-CccccccCCCCCcHHHH
Q 030660 9 MDHELLNVLRRRDSLL-----RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-ESLLRITDDEGNTPLHN 82 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~-----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~~~~~~~g~t~l~~ 82 (173)
-+.+++++|++.|.++ +..+..|+||||+|+..|+.+++++|++.|++++....... ....+..+..|.||||+
T Consensus 48 g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 127 (232)
T 2rfa_A 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127 (232)
T ss_dssp TCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH
T ss_pred CCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH
Confidence 4678999999999987 66778999999999999999999999999998765432111 11223345689999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHH----HHHHhcCCCcc------cccCCCCCcHHHHHH
Q 030660 83 AVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA----CFIIDQRPESL------NHRLPEELTLLHSAV 152 (173)
Q Consensus 83 a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~~~~~~------~~~~~~g~t~l~~a~ 152 (173)
|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++ ++|++++ ++. +..|..|.||||+|+
T Consensus 128 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~ 205 (232)
T 2rfa_A 128 AACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAG 205 (232)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHH
Confidence 99999999999999999998 88899999999999999999887 9999999 666 578999999999999
Q ss_pred HhCCCcHHHHHHhcccccC
Q 030660 153 MRQNYGEPMIFISLNKCLS 171 (173)
Q Consensus 153 ~~~~~~~~~~ll~~~~~~~ 171 (173)
..|+.+++++|+++|+...
T Consensus 206 ~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 206 VEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHTCHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHhcCccch
Confidence 9999999999999997653
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.2e-30 Score=178.09 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 89 (173)
+.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++.
T Consensus 104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~ 171 (223)
T 2f8y_A 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK------------DMQNNREETPLFLAAREGSY 171 (223)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCcCHHHHHHHcCCH
Confidence 456777777777777777777777777777777777777777777664 56788999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCc
Q 030660 90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPES 136 (173)
Q Consensus 90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~ 136 (173)
+++++|+++|+++ +..+..|.||+++|++.++.+++++|+++| +.
T Consensus 172 ~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g-~~ 216 (223)
T 2f8y_A 172 ETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYN-LV 216 (223)
T ss_dssp HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CS
T ss_pred HHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcC-CC
Confidence 9999999999998 888999999999999999999999999998 43
No 29
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=5.4e-30 Score=181.49 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=128.9
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCC----------CCCC--------------
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGT----------ESEP-------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~~~-------------- 65 (173)
+.+++++|+++|.+++..+..|+||||+|+..|+.+++++|++.|++++... ..+.
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 4667777777777777777777777777777777777777777777665442 1111
Q ss_pred --------CccccccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh-c
Q 030660 66 --------ESLLRITDDEGNTPLHNAVRNKH----ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID-Q 132 (173)
Q Consensus 66 --------~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ 132 (173)
+..++..+..|.||||.|+..+. .+++++|++.|+++ +.++..|.||||.|+..++.+++++|++ .
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence 33445567788888888888888 78888888888887 7788889999999999999999999998 5
Q ss_pred CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 133 RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 133 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+ ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus 243 g-~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 243 H-IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp S-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred C-CCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 6 88999999999999999999999999999999998875
No 30
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=6.9e-31 Score=184.17 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=63.6
Q ss_pred HHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 030660 36 HIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLS 115 (173)
Q Consensus 36 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 115 (173)
..+...++.+++++|++.|+++.. ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 28 ~~~~~~~~~~~v~~Ll~~g~~~~~-----------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 95 (253)
T 1yyh_A 28 NSEEEEDAPAVISDFIYQGASLHN-----------QTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLH 95 (253)
T ss_dssp -----------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred chhhcCCChHHHHHHHHccCCccc-----------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 347788999999999999988643 23556666666666666666666666666666 555666666666
Q ss_pred HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660 116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLS 171 (173)
Q Consensus 116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~ 171 (173)
+|+..++.+++++|+++++.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 96 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 151 (253)
T 1yyh_A 96 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151 (253)
T ss_dssp HHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 66666666666666666533566666666666666666666666666666666554
No 31
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=6.4e-31 Score=192.99 Aligned_cols=162 Identities=19% Similarity=0.195 Sum_probs=133.1
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-----------------------
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP----------------------- 65 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------------------- 65 (173)
-+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.......
T Consensus 31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 110 (364)
T 3ljn_A 31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER 110 (364)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence 468899999999999999999999999999999999999999999986544211110
Q ss_pred Ccccc-----------------ccCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHH
Q 030660 66 ESLLR-----------------ITDDEGNTPLHNAVRNK--HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIA 126 (173)
Q Consensus 66 ~~~~~-----------------~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~ 126 (173)
+...+ ..+..|.||||+|+..| +.+++++|++.|+++ +..+..|.||||+|+..++.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v 189 (364)
T 3ljn_A 111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREAL 189 (364)
T ss_dssp TCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHH
Confidence 11111 16667888888888888 888888888888887 77788888888888888888888
Q ss_pred HHHHhcCCCc-----ccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 127 CFIIDQRPES-----LNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 127 ~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
++|++++ ++ ++..+..|.||||+|+..|+.+++++|+++|+++++
T Consensus 190 ~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~ 239 (364)
T 3ljn_A 190 DLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239 (364)
T ss_dssp HHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC
T ss_pred HHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 8888887 66 888888888888888888888888888888888765
No 32
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=183.71 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=134.0
Q ss_pred hHHHHHHHHhcccc--hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------
Q 030660 10 DHELLNVLRRRDSL--LRKNNWKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP--------------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~--------------------- 65 (173)
+.+.++.+++.+.+ ++.+|..|+||||+|+..|+.+++++|++.|+ +++.....+.
T Consensus 88 ~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~ 167 (276)
T 4hbd_A 88 HLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167 (276)
T ss_dssp HHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHH
Confidence 44566666666555 88899999999999999999999999999998 6665555443
Q ss_pred -----CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHh-cCCCcccc
Q 030660 66 -----ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIID-QRPESLNH 139 (173)
Q Consensus 66 -----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~ 139 (173)
+......+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++ .| ++++.
T Consensus 168 ~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-ad~~~ 245 (276)
T 4hbd_A 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPS-CDISL 245 (276)
T ss_dssp HHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT-CCTTC
T ss_pred HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC-CCCcC
Confidence 2233456778999999999999999999999999998 8889999999999999999999999998 67 99999
Q ss_pred cCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 140 RLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 140 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
.|..|.|||++|+..|+.+++++|++++
T Consensus 246 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 246 TDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999999999875
No 33
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.5e-30 Score=171.11 Aligned_cols=126 Identities=24% Similarity=0.344 Sum_probs=120.2
Q ss_pred cHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 030660 33 TPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQT 112 (173)
Q Consensus 33 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 112 (173)
++|+.|++.|+.++|++|++.|+++ +.++..|.||||+|+..+..+++++|++.|+++ +.++..|.|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv------------n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~T 72 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV------------NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRT 72 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCC
Confidence 4799999999999999999999985 467889999999999999999999999999998 889999999
Q ss_pred HHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 113 PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 113 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|||+|+..++.+++++|+++| ++++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 73 pLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~ 131 (169)
T 4gpm_A 73 PLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 999999999999999999999 99999999999999999999999999999999999875
No 34
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=6.5e-30 Score=186.02 Aligned_cols=98 Identities=23% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHH
Q 030660 73 DDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLH 149 (173)
Q Consensus 73 ~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 149 (173)
+..|.||||.|+.. +..+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||||
T Consensus 208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~ 285 (351)
T 3utm_A 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALH 285 (351)
T ss_dssp TTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHH
Confidence 45677888888877 4467888888888877 778889999999999999999999999999 999999999999999
Q ss_pred HHHHhCCCcHHHHHHhcccccCC
Q 030660 150 SAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 150 ~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+|+..|+.+++++|+++|+++++
T Consensus 286 ~A~~~~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 286 RAALAGHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHcCcHHHHHHHHHcCCCCCC
Confidence 99999999999999999999876
No 35
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=9.3e-31 Score=180.85 Aligned_cols=148 Identities=22% Similarity=0.199 Sum_probs=140.0
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++.++..|.||||+|+..++.+++++|++.|+++ +..+..|.||||.|+..|+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP------------DAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcCC
Confidence 3678999999999999999999999999999999999999999999875 4567889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
.+++++|++.++++ +..+..|.||+|+|+..++.+++++|+++| ++++..|..|.||+++|+..++.+++++|.++|+
T Consensus 152 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 152 LKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 99999999999988 888999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred cc
Q 030660 169 CL 170 (173)
Q Consensus 169 ~~ 170 (173)
++
T Consensus 230 ~i 231 (231)
T 3aji_A 230 SM 231 (231)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.9e-31 Score=185.04 Aligned_cols=160 Identities=14% Similarity=0.031 Sum_probs=136.4
Q ss_pred chHHHHHHHHhcccchhcc-----------CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC-CccccccCCCC
Q 030660 9 MDHELLNVLRRRDSLLRKN-----------NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP-ESLLRITDDEG 76 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~-----------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~~~~~~~g 76 (173)
-+.+++++|++.|++++.. |..|+||||+|+..|+.+++++|++.|++++.....+. .......+.+|
T Consensus 57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence 4667899999999987743 36799999999999999999999999998755332110 11111223359
Q ss_pred CcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHh--cCcHH-------HHHHHHhcCCCcc-------
Q 030660 77 NTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAID--SSLTD-------IACFIIDQRPESL------- 137 (173)
Q Consensus 77 ~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~------- 137 (173)
.||||+|+..|+.+++++|++ .|+++ +.++..|+||||+|+. .++.+ ++++|+++| +++
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~~ 214 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQLE 214 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCGG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccccc
Confidence 999999999999999999999 89988 8899999999999999 78888 999999999 888
Q ss_pred cccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 138 NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 138 ~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
+..|..|.||||+|+..|+.+++++|+++|+..
T Consensus 215 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 889999999999999999999999999998753
No 37
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=8.3e-31 Score=185.52 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=134.5
Q ss_pred chHHHHHHHHhcccc-------hhc----cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--CccccccCCC
Q 030660 9 MDHELLNVLRRRDSL-------LRK----NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDDE 75 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~-------~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~~~~~~~~ 75 (173)
-+.+++++|++.|++ ++. .+..|+||||+|+..|+.+++++|++.|++++.....+. .......+..
T Consensus 68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 147 (273)
T 2pnn_A 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147 (273)
T ss_dssp TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCS
T ss_pred CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccC
Confidence 567899999999876 333 567899999999999999999999999998754332110 0011122347
Q ss_pred CCcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHhcCc---------HHHHHHHHhcCCCccc-----
Q 030660 76 GNTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESLN----- 138 (173)
Q Consensus 76 g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~~----- 138 (173)
|.||||+|+..|+.+++++|++ .|+++ +.++..|.||||+|+..++ .+++++|+++| ++++
T Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~n~~~~~ 225 (273)
T 2pnn_A 148 GELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKLHPTLKL 225 (273)
T ss_dssp CBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCCG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhccccccc
Confidence 9999999999999999999999 88988 8899999999999999887 78999999999 8886
Q ss_pred --ccCCCCCcHHHHHHHhCCCcHHHHHHhccc-ccC
Q 030660 139 --HRLPEELTLLHSAVMRQNYGEPMIFISLNK-CLS 171 (173)
Q Consensus 139 --~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~-~~~ 171 (173)
..|..|.||||+|+..|+.+++++|+++|+ +..
T Consensus 226 ~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 226 EEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE 261 (273)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred ccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence 489999999999999999999999999999 543
No 38
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=3.6e-30 Score=167.99 Aligned_cols=142 Identities=23% Similarity=0.288 Sum_probs=132.0
Q ss_pred chHHHHHHHHhc-ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRR-DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++. +.+++..+..|+||||+ +..|+.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus 13 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 13 GDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP------------NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp TCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTT
T ss_pred CCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC------------CCcCCCCCCHHHHHHHcC
Confidence 467899999988 44899999999999999 9999999999999999885 467789999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL 166 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~ 166 (173)
+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++. ++++..|..|.|||++|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999988 88899999999999999999999999987 88999999999999999999999999999975
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=6.8e-31 Score=187.28 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=123.9
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCC-CcHHHHHHhcCC
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEG-NTPLHNAVRNKH 88 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g-~t~l~~a~~~~~ 88 (173)
+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+
T Consensus 74 ~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~------------~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 74 DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL------------MFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp SCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG------------GGCSSSGGGSHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC------------CccCCCCCCCHHHHHHHcCC
Confidence 456777777777777777777777777777777777777777777764 4667778 799999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH-HHHHHHhCCCcHHHHHHhcc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL-LHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ll~~~ 167 (173)
.+++++|++.++.... ...|.||||.|+..++.+++++|+++| ++++..+..|.|| ||+|+..|+.+++++|+++|
T Consensus 142 ~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g 218 (285)
T 3kea_A 142 VSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218 (285)
T ss_dssp HHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999876521 127899999999999999999999998 9999999999997 99999999999999999999
Q ss_pred cccCC
Q 030660 168 KCLSI 172 (173)
Q Consensus 168 ~~~~~ 172 (173)
++++.
T Consensus 219 ad~~~ 223 (285)
T 3kea_A 219 INIYS 223 (285)
T ss_dssp BCSTT
T ss_pred CCCCC
Confidence 99875
No 40
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.8e-30 Score=174.05 Aligned_cols=137 Identities=21% Similarity=0.209 Sum_probs=128.5
Q ss_pred cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 030660 22 SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI 101 (173)
Q Consensus 22 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~ 101 (173)
..++.+|..|+||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..++.+++++|++.|++
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 93 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------ccccccCccHHHHHHHcCCHHHHHHHHHCCCC
Confidence 346788999999999999999999999999999874 45678899999999999999999999999998
Q ss_pred CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 102 PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 102 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+ +..+..|.||||+|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 94 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 162 (192)
T 2rfm_A 94 V-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162 (192)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred C-CCCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 8 888999999999999999999999999999 99999999999999999999999999999999999864
No 41
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.8e-31 Score=184.98 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=135.0
Q ss_pred cchHHHHHHHHhcccc-----------hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--CccccccCC
Q 030660 8 TMDHELLNVLRRRDSL-----------LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--ESLLRITDD 74 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~~~~~~~~ 74 (173)
.-+.+++++|++.|++ ++..+..|+||||+|+..|+.+++++|++.|++++....... .......+.
T Consensus 59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T 3jxi_A 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY 138 (260)
T ss_dssp TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC
T ss_pred cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc
Confidence 4567899999998865 334455899999999999999999999999998754332100 001112226
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHhcCc---------HHHHHHHHhcCCCcc-----
Q 030660 75 EGNTPLHNAVRNKHENVVRMLVK---KDRIPLGYLNNAEQTPLSIAIDSSL---------TDIACFIIDQRPESL----- 137 (173)
Q Consensus 75 ~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~----- 137 (173)
.|.||||+|+..|+.+++++|++ .|+++ +.++..|+||||+|+..++ .+++++|+++| +++
T Consensus 139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~ 216 (260)
T 3jxi_A 139 FGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTN 216 (260)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccc
Confidence 79999999999999999999999 88988 8899999999999998776 68999999999 888
Q ss_pred --cccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 138 --NHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 138 --~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
+..|..|.||||+|+..|+.+++++|+++|++.
T Consensus 217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 679999999999999999999999999998764
No 42
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=6.7e-30 Score=191.58 Aligned_cols=161 Identities=19% Similarity=0.311 Sum_probs=117.5
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL 68 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~ 68 (173)
+.+++++|+++|.+++..+..|.||||+|+..|+.+++++|++.|++++.....+. +..
T Consensus 191 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 270 (437)
T 1n11_A 191 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270 (437)
T ss_dssp CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC
Confidence 34455555555555555555555555555555555555555555544433322221 122
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660 69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 148 (173)
Q Consensus 69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 148 (173)
.+..+..|.||||+|+..|+.+++++|+++|... +..+..|.||||.|+.+++.+++++|+++| ++++..+..|.|||
T Consensus 271 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L 348 (437)
T 1n11_A 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPL 348 (437)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHH
Confidence 3456778889999999999999999999988887 778888999999999999999999999888 88888888899999
Q ss_pred HHHHHhCCCcHHHHHHhcccccCC
Q 030660 149 HSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 149 ~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|+|+..|+.+++++|+++|+++++
T Consensus 349 ~~A~~~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 349 HQAAQQGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHHHHCChHHHHHHHHHCcCCCCC
Confidence 999999999999999999988865
No 43
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.97 E-value=9.2e-30 Score=160.12 Aligned_cols=126 Identities=26% Similarity=0.405 Sum_probs=119.2
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 109 (173)
+|+||||+|+..|+.+++++|++.|.++ +..+..|.||||.|+..++.+++++|++.++++ +..+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 67 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN 67 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCC
Confidence 4899999999999999999999999874 456788999999999999999999999999988 888999
Q ss_pred CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660 110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 169 (173)
Q Consensus 110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~ 169 (173)
|.||+|.|+..++.+++++|++++ ++++..+..|.||+++|+..|+.+++++|+++|++
T Consensus 68 g~t~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 68 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHcChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999999999 99999999999999999999999999999999986
No 44
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=2e-29 Score=173.71 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=107.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCC-CCCCCC---------------------C--ccccc-cCCCCCcHHHHHHh
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITN-GTESEP---------------------E--SLLRI-TDDEGNTPLHNAVR 85 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~---------------------~--~~~~~-~~~~g~t~l~~a~~ 85 (173)
|+||||+|+..|+.+++++|++.+++... ....+. + ..+.. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 68999999999999999999999987644 222222 2 22233 56677888888888
Q ss_pred cCCHHHHHHHHhcC--CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660 86 NKHENVVRMLVKKD--RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIF 163 (173)
Q Consensus 86 ~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l 163 (173)
.|+.+++++|++.+ ++. +..+..|.||+|.|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 88888888888876 555 666777888888888888888888888877 77888888888888888888888888888
Q ss_pred Hhcc-cccCC
Q 030660 164 ISLN-KCLSI 172 (173)
Q Consensus 164 l~~~-~~~~~ 172 (173)
+++| ++++.
T Consensus 160 l~~g~~~~~~ 169 (228)
T 2dzn_A 160 CGLGKSAVNW 169 (228)
T ss_dssp HTTTCCCSCC
T ss_pred HhcCcccccC
Confidence 8888 66553
No 45
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=1.3e-29 Score=186.94 Aligned_cols=158 Identities=17% Similarity=0.150 Sum_probs=116.9
Q ss_pred HHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------C---ccc
Q 030660 14 LNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------E---SLL 69 (173)
Q Consensus 14 ~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~---~~~ 69 (173)
++.+++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.....+. + ..+
T Consensus 149 ~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 228 (373)
T 2fo1_E 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228 (373)
T ss_dssp HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT
T ss_pred HHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh
Confidence 4455577777777777778888888877888888888877777765554443 1 234
Q ss_pred cccCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCCCCC--------CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccc
Q 030660 70 RITDDEGNTPLHNAVRNK---HENVVRMLVKKDRIPLGY--------LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLN 138 (173)
Q Consensus 70 ~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~ 138 (173)
+..+..|.||||+|+..+ ..+++++|++.|+++ +. .+..|.||||.|+..++.+++++|+++++++++
T Consensus 229 ~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n 307 (373)
T 2fo1_E 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD 307 (373)
T ss_dssp SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT
T ss_pred hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc
Confidence 556777888888888776 677888888877766 32 455778888888888888888888876557788
Q ss_pred ccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 139 HRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 139 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus 308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~ 341 (373)
T 2fo1_E 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341 (373)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC
Confidence 8888888888888888888888888888887764
No 46
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.97 E-value=1.4e-30 Score=170.23 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=117.7
Q ss_pred hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC
Q 030660 24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL 103 (173)
Q Consensus 24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~ 103 (173)
.+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+ .++.+++++|++.|+++
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~- 70 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANP------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP- 70 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT------------TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-
Confidence 3456778999999999999999999999999875 457789999999985 89999999999999988
Q ss_pred CCCCCCCCC-HHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 104 GYLNNAEQT-PLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 104 ~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+.++..|.| |||+|+..++.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 71 ~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~ 139 (156)
T 1bi7_B 71 NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG 139 (156)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred CCcCCCCCcHHHHHHHHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence 888999999 999999999999999999999 99999999999999999999999999999999999864
No 47
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=2e-29 Score=175.01 Aligned_cols=133 Identities=26% Similarity=0.304 Sum_probs=72.1
Q ss_pred hhccCCCCCcHHHHHHHhCCHHHHHHHHh----hCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 030660 24 LRKNNWKGETPLHIAARVGDPAIVSTILK----YAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKD 99 (173)
Q Consensus 24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 99 (173)
++.+|..|+||||+|+..|+.+++++|++ .+.+++. .+..|.||||+|+..|+.+++++|++.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI------------YNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC------------CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc------------ccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 45678999999999999999999999997 5666543 3444455555555555555555555544
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCC----cccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 100 RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE----SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 100 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
+++ +..+..|.||+|.|+..++.+++++|++.+ . +++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 70 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 142 (241)
T 1k1a_A 70 ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142 (241)
T ss_dssp CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS-CTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 444 344444444444444444444444444444 2 33444444444444444444444444444444443
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=6e-31 Score=182.55 Aligned_cols=148 Identities=26% Similarity=0.253 Sum_probs=131.3
Q ss_pred HHHHHHHhcc----cchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 12 ELLNVLRRRD----SLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 12 ~~~~~l~~~g----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
+++++|++.+ .+++..+..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus 22 ~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~ 89 (236)
T 1ikn_D 22 ALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP------------ELRDFRGNTPLHLACEQG 89 (236)
T ss_dssp SSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS------------CCCCTTCCCHHHHHHHHT
T ss_pred hHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcC
Confidence 3445555544 478999999999999999999999999999999875 457789999999999999
Q ss_pred CHHHHHHHHhcCCCC-----CCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCC-CCCcHHHHHHHhCCCcHHH
Q 030660 88 HENVVRMLVKKDRIP-----LGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLP-EELTLLHSAVMRQNYGEPM 161 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~ 161 (173)
+.+++++|++.+..+ .+..+..|.||||+|+..++.+++++|+++| ++++..+. .|.||||+|+..|+.++++
T Consensus 90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~ 168 (236)
T 1ikn_D 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVS 168 (236)
T ss_dssp CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999998653 3566778999999999999999999999999 99999987 9999999999999999999
Q ss_pred HHHhcccccCC
Q 030660 162 IFISLNKCLSI 172 (173)
Q Consensus 162 ~ll~~~~~~~~ 172 (173)
+|+++|+++++
T Consensus 169 ~Ll~~ga~~~~ 179 (236)
T 1ikn_D 169 LLLKCGADVNR 179 (236)
T ss_dssp HHHTTTCCSCC
T ss_pred HHHHcCCCCCc
Confidence 99999999875
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.9e-30 Score=181.13 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=134.5
Q ss_pred HHHHHHHhcccchhc----cCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660 12 ELLNVLRRRDSLLRK----NNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84 (173)
Q Consensus 12 ~~~~~l~~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~ 84 (173)
.+++++++.|.+++. .+..|+||||+|+.. |+.+++++|++.|++++..... ........+..|.||||+|+
T Consensus 20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~ 98 (256)
T 2etb_A 20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL-VNAQCTDEFYQGHSALHIAI 98 (256)
T ss_dssp THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG-GGCCCCSTTTTTCCHHHHHH
T ss_pred HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh-cccccccccccCCCHHHHHH
Confidence 377888899999998 899999999999999 9999999999999886422100 00001123567999999999
Q ss_pred hcCCHHHHHHHHhcCCCCCCCCCCC-------------CCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHH
Q 030660 85 RNKHENVVRMLVKKDRIPLGYLNNA-------------EQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLL 148 (173)
Q Consensus 85 ~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l 148 (173)
..|+.+++++|++.|+++ +..+.. |.||||+|+..++.+++++|++ .| ++++..|..|+|||
T Consensus 99 ~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpL 176 (256)
T 2etb_A 99 EKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVL 176 (256)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHH
T ss_pred HcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHH
Confidence 999999999999999988 666665 9999999999999999999999 78 99999999999999
Q ss_pred HHHHH--hCCCc-------HHHHHHhccccc
Q 030660 149 HSAVM--RQNYG-------EPMIFISLNKCL 170 (173)
Q Consensus 149 ~~a~~--~~~~~-------~~~~ll~~~~~~ 170 (173)
|+|+. .++.+ ++++|+++|+++
T Consensus 177 h~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 177 HALVMIADNSPENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence 99999 67777 999999999987
No 50
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=4.4e-30 Score=188.54 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=136.7
Q ss_pred chHHHHHHHHhc----ccchhc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHhhCcccCCCCCCCC
Q 030660 9 MDHELLNVLRRR----DSLLRK-----------------NNWKGETPLHIAARVG--DPAIVSTILKYAPAITNGTESEP 65 (173)
Q Consensus 9 ~~~~~~~~l~~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~ 65 (173)
-+.+++++|++. |.+++. .+..|+||||+|+..| +.+++++|++.|+++
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-------- 166 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-------- 166 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT--------
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC--------
Confidence 357788888887 777776 8889999999999999 999999999999885
Q ss_pred CccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC-----CCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccccc
Q 030660 66 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRI-----PLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 140 (173)
Q Consensus 66 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 140 (173)
+..+..|.||||+|+..|+.+++++|++.+++ . +..+..|.||||+|+..++.+++++|+++| ++++..
T Consensus 167 ----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~ 240 (364)
T 3ljn_A 167 ----TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNME 240 (364)
T ss_dssp ----TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCC
T ss_pred ----cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence 46778999999999999999999999999888 6 788899999999999999999999999999 999999
Q ss_pred CCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 141 LPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 141 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
|..|.||||+|+..|+.+++++|+++|+++
T Consensus 241 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp CTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred CCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence 999999999999999999999999998764
No 51
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=185.90 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=128.4
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCH
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 89 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~ 89 (173)
+.+++++|++.|++++..+..|.||+++|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.
T Consensus 98 ~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~------------n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 98 RADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP------------NKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp CTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTCCCHHHHHHHTTCG
T ss_pred cHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHCCCH
Confidence 567899999999999999999999999999999999999999999885 46788999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC-CcHHHHHHhccc
Q 030660 90 NVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN-YGEPMIFISLNK 168 (173)
Q Consensus 90 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~ll~~~~ 168 (173)
+++++|++.|+++ +..+..|.||||+|+..|+.+++++|+++| ++++..|..|+||||+|++.+. .++++++.+.++
T Consensus 166 ~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 166 ELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp GGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred HHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 9999999999998 889999999999999999999999999999 9999999999999999987664 344444444444
No 52
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=6.2e-29 Score=186.34 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=144.1
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Cc
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ES 67 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~ 67 (173)
-+.+++++|+++|.+++..+..|.||||+|+..++.+++++|++.|++++.....+. +.
T Consensus 157 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp TCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 357889999999999999999999999999999999999999999988766544443 33
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH
Q 030660 68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147 (173)
Q Consensus 68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 147 (173)
.++..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||.|+..++.+++++|++++ ++++..+..|.||
T Consensus 237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~ 314 (437)
T 1n11_A 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTP 314 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCH
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCCCCH
Confidence 44667788999999999999999999999999888 888899999999999999999999999999 9999999999999
Q ss_pred HHHHHHhCCCcHHHHHHhcccccCC
Q 030660 148 LHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 148 l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
||+|+..|+.+++++|+++|++++.
T Consensus 315 L~~A~~~g~~~~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 315 LHVASHYGNIKLVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred HHHHHHcCcHHHHHHHHhcCCCCCC
Confidence 9999999999999999999999875
No 53
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.8e-30 Score=188.36 Aligned_cols=151 Identities=19% Similarity=0.121 Sum_probs=132.6
Q ss_pred hHHHHHHHHhcccchhc-cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 10 DHELLNVLRRRDSLLRK-NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
..+++++|++.|.+++. ++..|+||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+
T Consensus 109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~------------n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR------------LYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TBCCTTCCCHHHHHHHSSH
T ss_pred HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHhcc
Confidence 35688888999999999 8999999999999999999999999999885 4678899999999999988
Q ss_pred ---HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHh----cCcHHHHHHHHhcCCC--------------------------
Q 030660 89 ---ENVVRMLVKKDRIPLGYLNNAEQTPLSIAID----SSLTDIACFIIDQRPE-------------------------- 135 (173)
Q Consensus 89 ---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~~~~-------------------------- 135 (173)
.+++..|++.+....+..+..|+||||+|+. .++.+++++|++.+ .
T Consensus 177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~-~~~~~~~~~~~i~~~~~~~g~~~~~~~ 255 (327)
T 1sw6_A 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIVKKQNRPIQSGTNEKESKPNDKN 255 (327)
T ss_dssp HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH-HHHHHHGGGCCEEEC------------
T ss_pred cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH-HHHHhcccchHHHhhhhcccCCccccc
Confidence 5677777776533337889999999999999 88999999998763 2
Q ss_pred -------------------cccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCCC
Q 030660 136 -------------------SLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSIV 173 (173)
Q Consensus 136 -------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~ 173 (173)
+++..|..|+||||+|+..|+.+++++|+++|+++++.
T Consensus 256 ~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp ----CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred ccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 47888999999999999999999999999999998763
No 54
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=3.8e-30 Score=179.09 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=120.4
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-..+.++.++++|.+++.. ..|.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus 16 ~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~g~ 82 (239)
T 1ycs_B 16 NLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP------------SLPNDEGITALHNAVCAGH 82 (239)
T ss_dssp ----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC------------CCCCTTSCCHHHHHHHHTC
T ss_pred hhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCC
Confidence 3567899999999999854 67899999999999999999999999875 4678899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCC-cHHHHH--HHhCCCcHHHHHHh
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEEL-TLLHSA--VMRQNYGEPMIFIS 165 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a--~~~~~~~~~~~ll~ 165 (173)
.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..+..|. ||+|+| +..|+.+++++|++
T Consensus 83 ~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~ 160 (239)
T 1ycs_B 83 TEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160 (239)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence 99999999999998 889999999999999999999999999999 99999987777 999999 78899999999999
Q ss_pred cccccCC
Q 030660 166 LNKCLSI 172 (173)
Q Consensus 166 ~~~~~~~ 172 (173)
+|+++++
T Consensus 161 ~~a~~~~ 167 (239)
T 1ycs_B 161 VQEKMGI 167 (239)
T ss_dssp HHHHTTT
T ss_pred hhhcccc
Confidence 9998765
No 55
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=3.8e-29 Score=178.27 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=100.4
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
...++.++|.+. +++.+|..|+||||+|+..|+.+++++|++.|++++. . .|.||||+|+..|+
T Consensus 11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~--~g~t~L~~A~~~g~ 74 (285)
T 3kea_A 11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL------------L--ENEFPLHQAATLED 74 (285)
T ss_dssp CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC------------C--TTCCHHHHHTTSSS
T ss_pred CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC------------C--CCCCHHHHHHHcCC
Confidence 344555555554 4788888899999999999999999999998887543 2 36667777776666
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHhCCCcHHHHHHhcc
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE-LTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
.+++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+..| .||||+|+..|+.+++++|+++|
T Consensus 75 ~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 75 TKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp CHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 66777777666666 556666667777777666667777776666 6666666666 56666666666666666666666
Q ss_pred ccc
Q 030660 168 KCL 170 (173)
Q Consensus 168 ~~~ 170 (173)
++.
T Consensus 153 ~~~ 155 (285)
T 3kea_A 153 PST 155 (285)
T ss_dssp CTT
T ss_pred Ccc
Confidence 554
No 56
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.97 E-value=1.6e-29 Score=161.58 Aligned_cols=126 Identities=22% Similarity=0.201 Sum_probs=117.4
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
...+.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|+++ +..+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d 77 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVD 77 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence 445789999999999999999999999875 467788999999999999999999999999988 8889
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
..|.||||+|+..++.+++++|++++ ++++..|..|.|||++|+..|+.+++++|+++|
T Consensus 78 ~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 78 AIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999 999999999999999999999999999999986
No 57
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-28 Score=174.21 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=110.7
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------Ccc
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESL 68 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~ 68 (173)
+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++.....+. +..
T Consensus 51 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 51 REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 56777777777777777777777888888877777888888777777654443332 111
Q ss_pred cccc----------CCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCc----HHHHHHHHhcC
Q 030660 69 LRIT----------DDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSL----TDIACFIIDQR 133 (173)
Q Consensus 69 ~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~ 133 (173)
++.. +..|.||||.|+..|+.+++++|++. +.++ +..+..|.||+|.|+..++ .+++++|+++|
T Consensus 131 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT
T ss_pred cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcC
Confidence 1111 45566777777777777777777765 5555 6666677777777777666 66777777777
Q ss_pred CCcccccCCCCCcHHHHHHHhCCCcHHHHHHh-cccccCC
Q 030660 134 PESLNHRLPEELTLLHSAVMRQNYGEPMIFIS-LNKCLSI 172 (173)
Q Consensus 134 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~ 172 (173)
++++..+..|.||||+|+..|+.+++++|++ .|++++.
T Consensus 210 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 210 -ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248 (285)
T ss_dssp -CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred -CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence 7777777777777777777777777777777 6766653
No 58
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=4.4e-29 Score=184.05 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=130.7
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhC---cccCCCCCCCC---------------------
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYA---PAITNGTESEP--------------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~~--------------------- 65 (173)
+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+ .+++.....+.
T Consensus 178 ~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~L 257 (373)
T 2fo1_E 178 RRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257 (373)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHH
Confidence 567788888888888888888888888888888888888887776 45444333332
Q ss_pred ---Cccc--------cccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 66 ---ESLL--------RITDDEGNTPLHNAVRNKHENVVRMLVKKD-RIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 66 ---~~~~--------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
+..+ +..+..|.||||+|+..|+.+++++|++.+ .++ +..+..|.||||+|+..++.+++++|+++|
T Consensus 258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g 336 (373)
T 2fo1_E 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336 (373)
T ss_dssp HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 1111 235678999999999999999999999886 666 889999999999999999999999999999
Q ss_pred CCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 134 PESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 134 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
++++..|..|.|||++|+..|+.+++++|++++++.
T Consensus 337 -ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 337 -ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp -CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred -CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999864
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5.4e-29 Score=164.19 Aligned_cols=129 Identities=24% Similarity=0.239 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 109 (173)
.|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 68 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI------------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKG 68 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCC
Confidence 5789999999999999999999999774 467889999999999999999999999999988 888999
Q ss_pred CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 69 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 69 RESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999 99999999999999999999999999999999999865
No 60
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=9.6e-29 Score=179.72 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=134.1
Q ss_pred hHHHHHHHHhcccchhcc----------CCCCCcHHHHHHHhCCHHHHHHHHh-hCcccCCCCCCCC-------------
Q 030660 10 DHELLNVLRRRDSLLRKN----------NWKGETPLHIAARVGDPAIVSTILK-YAPAITNGTESEP------------- 65 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~------------- 65 (173)
+.+++++++++|++++.. +..|.||||+|+..|+.++|++|++ .|++++.....+.
T Consensus 137 ~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~ 216 (337)
T 4g8k_A 137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216 (337)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred cHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcc
Confidence 578899999999887754 4468999999999999999999996 4888876655543
Q ss_pred ------------CccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhc
Q 030660 66 ------------ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQ 132 (173)
Q Consensus 66 ------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 132 (173)
+..++.++..|.||||+|+..+..+++++|+.. +.++ +.++..|.||||+|++.|+.+++++|+++
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 334567788999999999999999999999986 5565 88999999999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 133 RPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 133 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
| ++++. .+||++|+..|+.+++++|+++||++++
T Consensus 296 G-Ad~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 296 G-ASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp S-CSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred C-CCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 9 77764 5699999999999999999999999875
No 61
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.4e-30 Score=178.38 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=124.5
Q ss_pred HHHHHhcccchhccC---CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHH
Q 030660 14 LNVLRRRDSLLRKNN---WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 90 (173)
Q Consensus 14 ~~~l~~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~ 90 (173)
++.|++.|.+++..+ ..+.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~d~~g~tpLh~A~~~g~~~ 68 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP------------SQPNEEGITALHNAICGANYS 68 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT------------TCCCTTSCCHHHHHHHTTCHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC------------CCCCCCCCCHHHHHHHcCCHH
Confidence 356778888776554 45678899999999999999999999875 467889999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccC-CCCCcHHHHH--HHhCCCcHHHHHHhcc
Q 030660 91 VVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRL-PEELTLLHSA--VMRQNYGEPMIFISLN 167 (173)
Q Consensus 91 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~ll~~~ 167 (173)
++++|++.|+++ +..+..|.||||+|+..++.+++++|+++| ++++..+ ..|.||||+| +..|+.+++++|+++|
T Consensus 69 ~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g 146 (229)
T 2vge_A 69 IVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVE 146 (229)
T ss_dssp HHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence 999999999988 888999999999999999999999999999 9999886 5999999999 9999999999999999
Q ss_pred cccCC
Q 030660 168 KCLSI 172 (173)
Q Consensus 168 ~~~~~ 172 (173)
+++++
T Consensus 147 a~~~~ 151 (229)
T 2vge_A 147 QSMGL 151 (229)
T ss_dssp HHTTT
T ss_pred CCccc
Confidence 98865
No 62
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=9.7e-29 Score=176.13 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=136.9
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC--------------------Ccc
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP--------------------ESL 68 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--------------------~~~ 68 (173)
-+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|++++....... +..
T Consensus 103 g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 182 (285)
T 3d9h_A 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182 (285)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 367899999999999999999999999999999999999999999988765443221 445
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660 69 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 148 (173)
Q Consensus 69 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 148 (173)
++..+..|.||||+|+..++.+++++|++.|+++ + .+..|.||||+|+..++.+++++|+++| ++++..|..|+|||
T Consensus 183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l 259 (285)
T 3d9h_A 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPV 259 (285)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGG
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHH
Confidence 6678899999999999999999999999999988 5 3788999999999999999999999999 99999999999999
Q ss_pred HHHHHhCCCcHHHHHHhc-ccccC
Q 030660 149 HSAVMRQNYGEPMIFISL-NKCLS 171 (173)
Q Consensus 149 ~~a~~~~~~~~~~~ll~~-~~~~~ 171 (173)
++|+ ++.+++++|+++ |+++.
T Consensus 260 ~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 260 ELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp GGSC--TTSHHHHHHHHHC-----
T ss_pred HHhc--CccHHHHHHHHhhccCCC
Confidence 9998 568999999998 77653
No 63
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.96 E-value=5.5e-30 Score=163.90 Aligned_cols=134 Identities=23% Similarity=0.217 Sum_probs=117.9
Q ss_pred ccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 030660 21 DSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDR 100 (173)
Q Consensus 21 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~ 100 (173)
|+++ .++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 67 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5566 67889999999999999999999999999875 4677899999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccc
Q 030660 101 IPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKC 169 (173)
Q Consensus 101 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~ 169 (173)
++ +..+..|.||||+|+..++.+++++|+++| ++++..|..|.||+++|+..+..+++++|...+.+
T Consensus 68 ~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 68 LV-NTTGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CT-TCCCGGGCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred cc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 88 888999999999999999999999999999 99999999999999999999999999888776554
No 64
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=6.8e-28 Score=166.86 Aligned_cols=161 Identities=19% Similarity=0.134 Sum_probs=98.6
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCC-CC---------------------C
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTES-EP---------------------E 66 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~~---------------------~ 66 (173)
-+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.+++....... +. +
T Consensus 20 g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g 99 (240)
T 3eu9_A 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence 4678899999999999999999999999999999999999999998876432221 10 2
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCc-HHHHHHHHhcCCCcccccCC-CC
Q 030660 67 SLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSL-TDIACFIIDQRPESLNHRLP-EE 144 (173)
Q Consensus 67 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~-~g 144 (173)
..++..+..|.||||.|+..++.+++++|++.++++ +..+..|.||+|.|+..+. .+++++|++.+ ++++..+. .|
T Consensus 100 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~-~~~~~~~~~~g 177 (240)
T 3eu9_A 100 ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHK 177 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT-CCTTCCCTTTC
T ss_pred CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcC-CCcchhhccCC
Confidence 222333444455555555555555555555554444 4444445555555553332 44444454444 44444443 55
Q ss_pred CcHHHHHHHhCCCcHHHHHHhcccccC
Q 030660 145 LTLLHSAVMRQNYGEPMIFISLNKCLS 171 (173)
Q Consensus 145 ~t~l~~a~~~~~~~~~~~ll~~~~~~~ 171 (173)
.||||+|+..|+.+++++|+++|++++
T Consensus 178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 178 NTALHWAVLAGNTTVISLLLEAGANVD 204 (240)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 566666666666666666666666554
No 65
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=3.3e-29 Score=176.01 Aligned_cols=155 Identities=23% Similarity=0.217 Sum_probs=131.2
Q ss_pred HHHHHHhcccchhccC----CCCCcHHHHHH---HhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHh
Q 030660 13 LLNVLRRRDSLLRKNN----WKGETPLHIAA---RVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85 (173)
Q Consensus 13 ~~~~l~~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~ 85 (173)
+++++.+.|.+++..+ ..|+||||+|+ ..|+.+++++|++.|+++..... -........+..|.||||+|+.
T Consensus 24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~~~~d~~g~t~L~~A~~ 102 (260)
T 3jxi_A 24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE-FINSPFRDVYYRGQTALHIAIE 102 (260)
T ss_dssp HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH-HHTCCBCCSSEESBCHHHHHHH
T ss_pred HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh-hhcccccccccCCCCHHHHHHH
Confidence 5667777999998776 67999999999 77999999999999876421000 0001123445689999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCC--------------CCCCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHH
Q 030660 86 NKHENVVRMLVKKDRIPLGYLN--------------NAEQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLL 148 (173)
Q Consensus 86 ~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l 148 (173)
.|+.+++++|++.|+++ +..+ ..|.||||+|+..++.+++++|++ .| ++++..|..|.|||
T Consensus 103 ~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-a~~~~~d~~g~TpL 180 (260)
T 3jxi_A 103 RRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-ADLRRQDSRGNTVL 180 (260)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHH
T ss_pred cCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-CCCcccCCCCCcHH
Confidence 99999999999999988 6666 689999999999999999999999 78 99999999999999
Q ss_pred HHHHHhCC---------CcHHHHHHhccccc
Q 030660 149 HSAVMRQN---------YGEPMIFISLNKCL 170 (173)
Q Consensus 149 ~~a~~~~~---------~~~~~~ll~~~~~~ 170 (173)
|+|+..++ .+++++|+++|+++
T Consensus 181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 99999888 69999999999987
No 66
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=169.40 Aligned_cols=148 Identities=17% Similarity=0.182 Sum_probs=117.4
Q ss_pred hHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC-
Q 030660 10 DHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH- 88 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~- 88 (173)
+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||.|+..+.
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~------------~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------------VDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHHCCS
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC------------ccccCCCCCcHHHHHHHhCCh
Confidence 34556666666666666666666666666666666666666665554 35678899999999997665
Q ss_pred HHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcc
Q 030660 89 ENVVRMLVKKDRIPLGYLNN-AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLN 167 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~ 167 (173)
.+++++|+..+.++ +..+. .|.||||.|+..++.+++++|+++| ++++..+..|.||+++|+..|+.+++++|++.+
T Consensus 156 ~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 156 VDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp STTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 78999999999998 66665 8999999999999999999999999 999999999999999999999999999999999
Q ss_pred cccC
Q 030660 168 KCLS 171 (173)
Q Consensus 168 ~~~~ 171 (173)
+...
T Consensus 234 ~~~~ 237 (240)
T 3eu9_A 234 QAKG 237 (240)
T ss_dssp ----
T ss_pred hccC
Confidence 8754
No 67
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=1.3e-28 Score=174.30 Aligned_cols=155 Identities=23% Similarity=0.207 Sum_probs=127.3
Q ss_pred HHHHHhcccchh----ccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660 14 LNVLRRRDSLLR----KNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86 (173)
Q Consensus 14 ~~~l~~~g~~~~----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~ 86 (173)
++.+.+.+.+++ ..+..|+||||+|+.. |+.+++++|++.|++...... .........+..|.||||+|+..
T Consensus 33 l~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~-~i~~~~~~~d~~g~tpL~~A~~~ 111 (273)
T 2pnn_A 33 LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ-FVNASYTDSYYKGQTALHIAIER 111 (273)
T ss_dssp HHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH-HHTCCCCSTTTTTCCHHHHHHHT
T ss_pred HHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH-HhhcccccccCCCCCHHHHHHHc
Confidence 333344666665 3578999999999987 999999999999976321000 00000113567899999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCC--------------CCCCHHHHHHhcCcHHHHHHHHh---cCCCcccccCCCCCcHHH
Q 030660 87 KHENVVRMLVKKDRIPLGYLNN--------------AEQTPLSIAIDSSLTDIACFIID---QRPESLNHRLPEELTLLH 149 (173)
Q Consensus 87 ~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~ 149 (173)
|+.+++++|++.|+++ +..+. .|.||||+|+..++.+++++|++ .| ++++..|..|.||||
T Consensus 112 g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh 189 (273)
T 2pnn_A 112 RNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLH 189 (273)
T ss_dssp TCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHH
T ss_pred CCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHH
Confidence 9999999999999988 66665 79999999999999999999999 78 999999999999999
Q ss_pred HHHHhCC---------CcHHHHHHhcccccC
Q 030660 150 SAVMRQN---------YGEPMIFISLNKCLS 171 (173)
Q Consensus 150 ~a~~~~~---------~~~~~~ll~~~~~~~ 171 (173)
+|+..|+ .+++++|+++|++++
T Consensus 190 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 9999998 799999999999875
No 68
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.96 E-value=2.5e-28 Score=172.98 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=102.3
Q ss_pred hhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcc---cCCCCCCCC---------------------CccccccCCCCCcH
Q 030660 24 LRKNNWKGETPLHIAARVGDPAIVSTILKYAPA---ITNGTESEP---------------------ESLLRITDDEGNTP 79 (173)
Q Consensus 24 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~~---------------------~~~~~~~~~~g~t~ 79 (173)
++.+|..|+||||+|+..|+.+++++|++.|++ ++.....+. +..++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 467889999999999999999999999999887 333333332 33344555566666
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC----------------------------------------------CCCCCCCCCCH
Q 030660 80 LHNAVRNKHENVVRMLVKKDRIP----------------------------------------------LGYLNNAEQTP 113 (173)
Q Consensus 80 l~~a~~~~~~~~~~~Ll~~~~~~----------------------------------------------~~~~~~~g~t~ 113 (173)
||+|+..++.+++++|++.++.. .+..+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 66666666666666666554331 13445566777
Q ss_pred HHHHHhcCcHHHHHHHHhcCCCcccccCCC-CCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 114 LSIAIDSSLTDIACFIIDQRPESLNHRLPE-ELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 114 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
||+|+..++.+++++|+++| ++++..+.. |.||||+|+..|+.+++++|+++|+++++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~ 220 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 77777777777777777777 667766643 77777777777777777777777777654
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.3e-28 Score=161.61 Aligned_cols=131 Identities=24% Similarity=0.222 Sum_probs=121.7
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
...+.++|+.|++.|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~ 77 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV------------NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVD 77 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccC
Confidence 345678999999999999999999999875 457789999999999999999999999999988 8889
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
..|.||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 141 (169)
T 2y1l_E 78 HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999864
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=1.8e-28 Score=159.59 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=118.7
Q ss_pred CcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCC
Q 030660 32 ETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQ 111 (173)
Q Consensus 32 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 111 (173)
.++|+.|+..|+.+++++|++.|.+. ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 68 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPF-------------TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDR 68 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCC-------------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCC
Confidence 57999999999999999999999864 24778999999999999999999999999988 88899999
Q ss_pred CHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 112 TPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 112 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 69 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 69 TPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 9999999999999999999999 99999999999999999999999999999999999865
No 71
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=9.2e-28 Score=166.37 Aligned_cols=149 Identities=23% Similarity=0.311 Sum_probs=117.5
Q ss_pred chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCC---------------------CccccccCCCCCcHHH
Q 030660 23 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEP---------------------ESLLRITDDEGNTPLH 81 (173)
Q Consensus 23 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~ 81 (173)
+++..+..|.||||+|+..|+.+++++|++.|++++.....+. +..++..+..|.||||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 5677889999999999999999999999999998876554443 3344556677788888
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHH
Q 030660 82 NAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPM 161 (173)
Q Consensus 82 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 161 (173)
.|+..|+.+++++|++.+....+..+..|.||+|.|+..++.+++++|+++| ++++..+..|.||||+|+..|+.++++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~ 161 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAE 161 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence 8888888888888887774333667777888888888888888888888777 777777778888888888888888888
Q ss_pred HHHhcccccCC
Q 030660 162 IFISLNKCLSI 172 (173)
Q Consensus 162 ~ll~~~~~~~~ 172 (173)
+|+++|++++.
T Consensus 162 ~Ll~~g~~~~~ 172 (237)
T 3b7b_A 162 ILLAAKCDLHA 172 (237)
T ss_dssp HHHTTTCCTTC
T ss_pred HHHHcCCCCCC
Confidence 88888877654
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2.3e-28 Score=160.86 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=120.9
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL 106 (173)
Q Consensus 27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 106 (173)
.+..|.+||+.|+..|+.+++++|++.+... ....+..|.||||+|+..++.+++++|++.|+++ +..
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 71 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAK 71 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----------ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-Ccc
Confidence 3567889999999999999999999865421 2356778999999999999999999999999988 888
Q ss_pred CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+..|.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 72 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 72 DKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136 (165)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 999999999999999999999999999 99999999999999999999999999999999999875
No 73
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=173.87 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=126.5
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus 69 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~ 136 (351)
T 3utm_A 69 NRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV------------NAMDLWQFTPLHEAASKNR 136 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence 3567888888888888888888888888888888888888888887764 4567788999999999999
Q ss_pred HHHHHHHHhcCCCCCCCC------------------------------------------------------CCCCCCHH
Q 030660 89 ENVVRMLVKKDRIPLGYL------------------------------------------------------NNAEQTPL 114 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~------------------------------------------------------~~~g~t~l 114 (173)
.+++++|++.|+++ +.. +..|.||+
T Consensus 137 ~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L 215 (351)
T 3utm_A 137 VEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL 215 (351)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred HHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence 99999999988776 332 34577889
Q ss_pred HHHHhc---CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 115 SIAIDS---SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 115 ~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|.|+.. +..+++++|++.+ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 216 ~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~ 275 (351)
T 3utm_A 216 HCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275 (351)
T ss_dssp HHHHHCCSTTHHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHhCccHHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 988888 5678999999988 89999999999999999999999999999999999875
No 74
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=6.2e-28 Score=159.82 Aligned_cols=129 Identities=21% Similarity=0.194 Sum_probs=119.7
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAE 110 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g 110 (173)
+.+|||.|+..|+.+++++|++.+... ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 69 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNL-----------VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKER 69 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGG-----------GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCccc-----------ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccC
Confidence 468999999999999999999998652 3567889999999999999999999999999988 8889999
Q ss_pred CCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 111 QTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 111 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
.||||.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 70 ~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 130 (172)
T 3v30_A 70 ESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130 (172)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence 99999999999999999999999 99999999999999999999999999999999999875
No 75
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=3.4e-29 Score=168.16 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=126.4
Q ss_pred hHHHHHHHHhcccchhccC-CCCCcHHHHHHHhCCH----HHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660 10 DHELLNVLRRRDSLLRKNN-WKGETPLHIAARVGDP----AIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAV 84 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~~~-~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~ 84 (173)
+.+.++.+++.+ ++..+ ..|+||||+|+..++. +++++|++.|+++ +.++..|+||||+|+
T Consensus 18 ~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv------------n~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 18 TYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI------------KSRTKEGTTLFFPLF 83 (186)
T ss_dssp CHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS------------SCCCTTCCCTHHHHH
T ss_pred CHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC------------CCCCCCCCcHHHHHH
Confidence 455666666655 34555 6799999999999975 5999999999986 467889999999999
Q ss_pred hcCC------HHHHHHHHhcCCCCCCCCCCCCC-CHHHHHHhcC-----cHHHHHHHHh-cCCCcccccCCCCCcHHHHH
Q 030660 85 RNKH------ENVVRMLVKKDRIPLGYLNNAEQ-TPLSIAIDSS-----LTDIACFIID-QRPESLNHRLPEELTLLHSA 151 (173)
Q Consensus 85 ~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a 151 (173)
..++ .+++++|+++|+++ +.+|..|. ||||+|+..+ ..+++++|++ +| ++++..|..|+||||+|
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHH
Confidence 9886 47899999999999 89999999 9999999944 4579999999 88 99999999999999999
Q ss_pred HHhCCCcHHHHHHhcccccCC
Q 030660 152 VMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 152 ~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+..|+.+++++|+++.+..++
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999988766543
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=9.9e-28 Score=159.89 Aligned_cols=131 Identities=23% Similarity=0.242 Sum_probs=118.9
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCC
Q 030660 29 WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNN 108 (173)
Q Consensus 29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~ 108 (173)
..+.++|+.|+..|+.+++++|++.+... ++..+..|.||||+|+..++.+++++|++.|+++ +..+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~ 70 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND-----------LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNR 70 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc-----------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCC
Confidence 35789999999999999999999985331 3567889999999999999999999999999988 88899
Q ss_pred CCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 109 AEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 109 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
.|.||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++|+++++
T Consensus 71 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 133 (179)
T 3f6q_A 71 GDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133 (179)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence 9999999999999999999999999 99999999999999999999999999999999999865
No 77
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=1.7e-27 Score=170.26 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=132.5
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCcc--------------------
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESL-------------------- 68 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-------------------- 68 (173)
-+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.....+...+
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~ 163 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence 468899999999999999999999999999999999999999999999876665553110
Q ss_pred ----------------------------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhc
Q 030660 69 ----------------------------LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDS 120 (173)
Q Consensus 69 ----------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 120 (173)
....+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~ 242 (299)
T 1s70_B 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHW 242 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred CCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhc
Confidence 0124567999999999999999999999999998 88899999999999999
Q ss_pred CcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHH
Q 030660 121 SLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFI 164 (173)
Q Consensus 121 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll 164 (173)
++.+++++|+++| ++++..|..|.||+++|+.. ..+.++.++
T Consensus 243 ~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~-~~~~l~~l~ 284 (299)
T 1s70_B 243 GKEEACRILVENL-CDMEAVNKVGQTAFDVADED-ILGYLEELQ 284 (299)
T ss_dssp TCHHHHHHHHHTT-CCTTCCCTTSCCTTTSCCSG-GGHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHH-HHHHHHHHH
Confidence 9999999999999 99999999999999999653 344444444
No 78
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.4e-27 Score=156.59 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 109 (173)
...||||.|+..|+.+++++|++.|.++ +..+..|.||||+|+. ++.+++++|++.|+++ +..+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~ 69 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV------------NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRT 69 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc------------cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCC
Confidence 4568999999999999999999998774 4677899999999999 9999999999999988 888999
Q ss_pred CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
|.||+|.|+..++.+++++|++++ ++++..+..|.||||+|+..|+.+++++|+++|++.
T Consensus 70 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 129 (162)
T 1ihb_A 70 GFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129 (162)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC
Confidence 999999999999999999999999 999999999999999999999999999999999973
No 79
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.95 E-value=2.9e-28 Score=167.67 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=114.7
Q ss_pred hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCCC
Q 030660 25 RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKK-DRIPL 103 (173)
Q Consensus 25 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~ 103 (173)
+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++. ++++
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~- 133 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL- 133 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-
Confidence 334667899999999999999999999999875 45778899999999999999999999998 7777
Q ss_pred CCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 104 GYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 104 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+..+..|.||||+|+..++.+++++|+++| ++++..|..|.|||++|+..|+.++++.|+..|+...+
T Consensus 134 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence 889999999999999999999999999999 99999999999999999999999999999999987654
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.3e-27 Score=166.32 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=91.8
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
+..|.||||.|++.++.+.++.|+++|++++ .+..|.||||.|+..|+.+++++|++.|+++ +..+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~-------------~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d 67 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-------------FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPN 67 (239)
T ss_dssp ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCC
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc-------------cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcC
Confidence 3468999999999999999999999998863 2356899999999999999999999999988 8889
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 68 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 131 (239)
T 1ycs_B 68 DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131 (239)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999 99999999999999999999999999999999999875
No 81
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.94 E-value=3.1e-27 Score=148.42 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=103.9
Q ss_pred cCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660 27 NNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL 106 (173)
Q Consensus 27 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 106 (173)
.+..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.|+++ +.+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~ 69 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAP 69 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCT------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCC
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCc------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcC
Confidence 3457889999999999999999999999874 467788999999999999999999999999988 888
Q ss_pred CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660 107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 156 (173)
Q Consensus 107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 156 (173)
+..|.||||+|+..++.+++++|++++ ++++..|..|.||+++|...+.
T Consensus 70 d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~ 118 (123)
T 3aaa_C 70 DKHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAI 118 (123)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhCCHHH
Confidence 999999999999999999999999999 9999999999999999954433
No 82
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.9e-26 Score=150.30 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=115.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhC-cccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 109 (173)
+.||||.|+..|+.+++++|++.. .+ ++..+..|.||||+ +..|+.+++++|++.|+++ +..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~ 67 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVH------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTS 67 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCC------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcC------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence 468999999999999999999982 13 34678889999999 9999999999999999988 888999
Q ss_pred CCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 110 EQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 110 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|.||||.|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++ ++++.
T Consensus 68 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~ 128 (156)
T 1bd8_A 68 GTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128 (156)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence 999999999999999999999999 99999999999999999999999999999998 77654
No 83
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=1.9e-25 Score=151.07 Aligned_cols=143 Identities=15% Similarity=0.090 Sum_probs=84.7
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHhhCc-ccCCCCCCCC---------------------CccccccCCCCCcHHHHHHhc
Q 030660 29 WKGETPLHIAARVGDPAIVSTILKYAP-AITNGTESEP---------------------ESLLRITDDEGNTPLHNAVRN 86 (173)
Q Consensus 29 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~---------------------~~~~~~~~~~g~t~l~~a~~~ 86 (173)
..+.||||.|+..|+.+.++.|++.+. +++.....+. +..++..+..|.||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 467899999999999999999999876 5443333322 233344445555555555555
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC-----CcHHH
Q 030660 87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN-----YGEPM 161 (173)
Q Consensus 87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~ 161 (173)
++.+++++|++.+....+..+..|.||+|.|+..++.+++++|+++++++++..+..|.||||+|+..++ .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 5555555555332222244555555555555555555555555555545555555555555555555555 55555
Q ss_pred HHHhcccccC
Q 030660 162 IFISLNKCLS 171 (173)
Q Consensus 162 ~ll~~~~~~~ 171 (173)
+|+++|++++
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 5555555554
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=7e-27 Score=152.60 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=104.5
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCc-HHHHHHhcC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT-PLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t-~l~~a~~~~ 87 (173)
-+.+++++|++.|.+++..+..|+||||+|+ .|+.+++++|++.|+++ +..+..|.| |||+|+..|
T Consensus 23 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~------------~~~d~~g~ttpL~~A~~~~ 89 (156)
T 1bi7_B 23 GRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP------------NCADPATLTRPVHDAAREG 89 (156)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC------------CCCCTTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC------------CCcCCCCCcHHHHHHHHCC
Confidence 4678999999999999999999999999996 89999999999999875 467788998 999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 151 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a 151 (173)
+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..+..|.||.+.+
T Consensus 90 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 90 FLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP 151 (156)
T ss_dssp CHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred CHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence 999999999999998 888999999999999999999999999999 99999999999998744
No 85
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.5e-28 Score=167.69 Aligned_cols=141 Identities=20% Similarity=0.136 Sum_probs=123.7
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus 32 g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~------------n~~d~~g~tpLh~A~~~g~ 99 (229)
T 2vge_A 32 GELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV------------NSPDSHGWTPLHCAASCND 99 (229)
T ss_dssp TCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------CCCCCCCCCHHHHHHHcCC
Confidence 4678999999999999999999999999999999999999999999885 4677899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCC-CCCCCHHHHH--HhcCcHHHHHHHHhcCCCcc----------------------------
Q 030660 89 ENVVRMLVKKDRIPLGYLN-NAEQTPLSIA--IDSSLTDIACFIIDQRPESL---------------------------- 137 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~Ll~~~~~~~---------------------------- 137 (173)
.+++++|++.|+++ +..+ ..|.||||+| +..++.+++++|++.| +++
T Consensus 100 ~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga 177 (229)
T 2vge_A 100 TVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDELSFREGE 177 (229)
T ss_dssp HHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSCBCCSSTTBCCBCTTC
T ss_pred HHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHHHhhccccccCccccc
Confidence 99999999999999 5554 6999999999 8999999999999876 443
Q ss_pred ----cccCCCCCcHHHHHHHhCCCcHHHHH
Q 030660 138 ----NHRLPEELTLLHSAVMRQNYGEPMIF 163 (173)
Q Consensus 138 ----~~~~~~g~t~l~~a~~~~~~~~~~~l 163 (173)
+..|..|.||||+|+..|+.++++..
T Consensus 178 ~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 178 SVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp EEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred cccccccCCCcccHHHHHHHcCCcceeehh
Confidence 33466678888888888887777653
No 86
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.94 E-value=5e-27 Score=157.13 Aligned_cols=126 Identities=18% Similarity=0.147 Sum_probs=111.3
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
+..|+||||+|+..|+.++++.|++ +.++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~ 106 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRD 106 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCC
Confidence 5578999999999999999999999 7764 467889999999999999999999999999998 6666
Q ss_pred -CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 108 -NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 108 -~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
..|+||||+|+..++.+++++|+++| ++++..|..|.||||+|+..++.+..+.++..++
T Consensus 107 ~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~ 167 (183)
T 3deo_A 107 MRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167 (183)
T ss_dssp SSSSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHH
T ss_pred CCCCCCHHHHHHhcCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccCcccccHHHHHH
Confidence 88999999999999999999999999 9999999999999999998866555555554443
No 87
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.94 E-value=5.5e-27 Score=170.07 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=118.0
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCC---HHHHHHHHhhC-cccCCCCCCCCCccccccCCCCCcHHHHHH
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGD---PAIVSTILKYA-PAITNGTESEPESLLRITDDEGNTPLHNAV 84 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~ 84 (173)
-+.+++++|+++|++++.++..|+||||+|+..|+ .++++.|++.+ ++ ++..+..|+||||+|+
T Consensus 142 g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~------------~~~~d~~g~tpLh~A~ 209 (327)
T 1sw6_A 142 ANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC------------LILEDSMNRTILHHII 209 (327)
T ss_dssp TCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG------------GGEECTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc------------ccCCCCCCCCHHHHHH
Confidence 36789999999999999999999999999999998 78888888887 43 3578899999999999
Q ss_pred h----cCCHHHHHHHHhcCC---------------------------------------------CCCCCCCCCCCCHHH
Q 030660 85 R----NKHENVVRMLVKKDR---------------------------------------------IPLGYLNNAEQTPLS 115 (173)
Q Consensus 85 ~----~~~~~~~~~Ll~~~~---------------------------------------------~~~~~~~~~g~t~l~ 115 (173)
. .|+.+++++|++.+. ++ +.++..|+||||
T Consensus 210 ~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~-n~~d~~G~TpLh 288 (327)
T 1sw6_A 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML-NAQDSNGDTCLN 288 (327)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT-TCCCTTSCCHHH
T ss_pred HHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC-CCCCCCCCCHHH
Confidence 9 899999999987632 23 778889999999
Q ss_pred HHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhC
Q 030660 116 IAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQ 155 (173)
Q Consensus 116 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 155 (173)
+|++.++.+++++|+++| ++++..|..|+||||+|+..|
T Consensus 289 ~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 289 IAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence 999999999999999999 999999999999999998654
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=5.3e-26 Score=158.68 Aligned_cols=126 Identities=18% Similarity=0.117 Sum_probs=113.9
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
+..|.||||+|+..|+.++++.|++ ++++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~ 107 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRD 107 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT------------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC------------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCC
Confidence 3578899999999999999999999 8764 467889999999999999999999999999999 6666
Q ss_pred -CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHH----------------HhCCCcHHHHHHhccc
Q 030660 108 -NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAV----------------MRQNYGEPMIFISLNK 168 (173)
Q Consensus 108 -~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~ll~~~~ 168 (173)
..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+ ..|+.+++++|++++.
T Consensus 108 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 108 MRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp SSSCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 88999999999999999999999999 999999999999999888 5678899999988644
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=7e-25 Score=139.95 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=104.7
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++..+..|+||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 25 GQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV------------NAVDAIGFTPLHLAAFIGH 92 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CcCCCCCCCHHHHHHHcCC
Confidence 4678999999999999999999999999999999999999999999875 4677899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++|
T Consensus 93 ~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 93 LEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999988 888999999999999999999999999865
No 90
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=4e-25 Score=168.43 Aligned_cols=134 Identities=13% Similarity=-0.008 Sum_probs=118.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHh---cCCHHHHHHHHhcCCCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR---NKHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
..+.||.|+..|+.+.++.|++.|++++.... ....+..|.||||+|+. .|+.+++++|++.|+++ +.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d 204 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKA 204 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCC------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccC
Confidence 34789999999999999999999998754321 11237789999999966 89999999999999998 8899
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhcccccCC
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
..|+||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTC-CCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999864
No 91
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.93 E-value=5.1e-25 Score=156.42 Aligned_cols=132 Identities=15% Similarity=0.041 Sum_probs=119.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
..++|+.|+..++.+.++.+++.|.++.... .++..+..|.||||+|+.. ++.+++++|++.|+++ +.++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d 202 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKI------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQT 202 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhc------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccC
Confidence 3578999999999999999999998764321 1345578899999999998 8899999999999998 8889
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++.
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999 999999999999999999999999999999999864
No 92
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.9e-25 Score=142.55 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=104.7
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCC-CCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDE-GNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-g~t~l~~a~~~~ 87 (173)
-+.+++++|++.|.+++.++..|+||||+|+. ++.+++++|++.|+++ +..+.. |.||||+|+..+
T Consensus 23 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~------------~~~~~~~g~t~L~~A~~~~ 89 (136)
T 1d9s_A 23 GQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP------------NCADPATLTRPVHDAAREG 89 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS------------SCCBTTTTBCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC------------CCcCCCCCCCHHHHHHHcC
Confidence 46889999999999999999999999999999 9999999999999885 456777 999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
+.+++++|++.|+++ +..+..|.||+|+|+..++.+++++|+++|
T Consensus 90 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 90 FLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp CHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999998 888999999999999999999999999988
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=2.1e-25 Score=160.08 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=86.7
Q ss_pred hHHHHHHHHhcccchhc------cCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHH
Q 030660 10 DHELLNVLRRRDSLLRK------NNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPL 80 (173)
Q Consensus 10 ~~~~~~~l~~~g~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l 80 (173)
+.+.++.+++.|.+++. .+..|+||||+|+.. ++.+++++|++.|+++ +..|..|.|||
T Consensus 163 ~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv------------n~~d~~G~TpL 230 (301)
T 2b0o_E 163 DLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------------DAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT------------TCCCTTCCCHH
T ss_pred CHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC------------CCCCCCCCCHH
Confidence 45667777777777776 466777777777776 6777777777777664 34566777777
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCC
Q 030660 81 HNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQN 156 (173)
Q Consensus 81 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 156 (173)
|+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|++++ ++ .|.||||+|+..|+
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCC
Confidence 7777777777777777777777 677777777777777777777777777766 33 46777777777665
No 94
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.92 E-value=7.3e-25 Score=131.06 Aligned_cols=93 Identities=23% Similarity=0.325 Sum_probs=88.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHh
Q 030660 75 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMR 154 (173)
Q Consensus 75 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 154 (173)
.|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence 4789999999999999999999999988 888999999999999999999999999999 99999999999999999999
Q ss_pred CCCcHHHHHHhcccc
Q 030660 155 QNYGEPMIFISLNKC 169 (173)
Q Consensus 155 ~~~~~~~~ll~~~~~ 169 (173)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999985
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=155.63 Aligned_cols=132 Identities=13% Similarity=-0.007 Sum_probs=117.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN---KHENVVRMLVKKDRIPLGYLN 107 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~ 107 (173)
+.++|+.|+..|+.+.++.|++.|++++.... ....+..|.||||+|+.. +..+++++|+..|+++ +.++
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d 223 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKA 223 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCC------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCC
Confidence 45789999999999999999999988643110 001577899999999997 8899999999999988 8889
Q ss_pred CCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccccc
Q 030660 108 NAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNKCL 170 (173)
Q Consensus 108 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~ 170 (173)
..|.||||+|+..++.+++++|+++| ++++..|..|.|||++|+..|+.+++++|+++|++.
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 99999999999999999999999999 999999999999999999999999999999998864
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=6.9e-24 Score=133.09 Aligned_cols=112 Identities=27% Similarity=0.437 Sum_probs=105.6
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 88 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~ 88 (173)
-+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.||||+|+..++
T Consensus 13 ~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTC
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------------cccCCCCCcHHHHHHHcCh
Confidence 4678999999999999999999999999999999999999999999874 4677889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 89 ENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 89 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
.+++++|++.|+++ +..+..|.||++.|+..++.+++++|+++|
T Consensus 81 ~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 81 LEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999999988 888999999999999999999999999998
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.92 E-value=1.6e-24 Score=159.07 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=116.2
Q ss_pred CCCcHHHHHHHh-CCHHHHHHHHhhCcccCCCCCCCCCccccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 030660 30 KGETPLHIAARV-GDPAIVSTILKYAPAITNGTESEPESLLRITD--DEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYL 106 (173)
Q Consensus 30 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 106 (173)
.+.|+||.|+.. ++.++++.|++.|++++ ..+ ..|.||||+|+..|+.+++++|+..|+++ +..
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~ 264 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVN------------WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQA 264 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCC
Confidence 455799999999 99999999999998864 344 78999999999999999999999999998 888
Q ss_pred CCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhccc
Q 030660 107 NNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISLNK 168 (173)
Q Consensus 107 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~ 168 (173)
+..|.||||+|+..++.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+..+.
T Consensus 265 d~~G~TpLh~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 265 DSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 999999999999999999999999999 9999999999999999999999999999998774
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=3.7e-24 Score=143.14 Aligned_cols=126 Identities=19% Similarity=0.102 Sum_probs=113.2
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++ |.+++.++..|+||||+|+..|+.+++++|++.|++++ ..+ ..|+||||+|+..+
T Consensus 55 g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~------------~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 55 ADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp TCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCSSSSCCHHHHHHHTT
T ss_pred CCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------cCCCCCCCCHHHHHHhcC
Confidence 36789999999 99999999999999999999999999999999998853 445 78999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHHHHhc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMIFISL 166 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~ 166 (173)
+.+++++|+++|+++ +.++..|.||+|+|++.++. ..+.+|+++|+..|..+++++|.++
T Consensus 122 ~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 122 RPEVVEALVELGADI-EVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999998 88999999999999874221 3568999999999999999999875
No 99
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.91 E-value=6.2e-24 Score=131.71 Aligned_cols=109 Identities=26% Similarity=0.337 Sum_probs=97.9
Q ss_pred ccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 030660 26 KNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 105 (173)
Q Consensus 26 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~ 105 (173)
.+|..|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|+++ +.
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~ 70 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NA 70 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS------------SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cc
Confidence 46889999999999999999999999999874 467788999999999999999999999999988 88
Q ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHH
Q 030660 106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLL 148 (173)
Q Consensus 106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 148 (173)
.+..|.||||+|+..++.+++++|+++| ++++..+..|.+|-
T Consensus 71 ~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 71 RSKDGNTPEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHH 112 (115)
T ss_dssp CCTTCCCTTHHHHTTTCHHHHHHHHTTS-SSHHHHSCCCC---
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCccccccc
Confidence 8999999999999999999999999999 99999999998874
No 100
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=6.1e-25 Score=147.40 Aligned_cols=127 Identities=10% Similarity=0.021 Sum_probs=112.3
Q ss_pred CCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhcCCCCCCC
Q 030660 31 GETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNKHE----NVVRMLVKKDRIPLGY 105 (173)
Q Consensus 31 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~ 105 (173)
++++|+.|++.|+.+.++.++..+.. ..+ ..|+||||+|+..++. +++++|++.|+++ +.
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--------------~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~ 70 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--------------DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KS 70 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--------------CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--------------cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CC
Confidence 56899999999999999999988743 333 6799999999999975 5899999999999 88
Q ss_pred CCCCCCCHHHHHHhcCc------HHHHHHHHhcCCCcccccCCCCC-cHHHHHHHhCC-----CcHHHHHHh-cccccCC
Q 030660 106 LNNAEQTPLSIAIDSSL------TDIACFIIDQRPESLNHRLPEEL-TLLHSAVMRQN-----YGEPMIFIS-LNKCLSI 172 (173)
Q Consensus 106 ~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~~ll~-~~~~~~~ 172 (173)
++..|+||||+|+..++ .+++++|+++| ++++..|..|. ||||+|+..+. .+++++|++ +|+++++
T Consensus 71 ~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 71 RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence 99999999999999876 57899999999 99999999999 99999999544 469999999 9999876
Q ss_pred C
Q 030660 173 V 173 (173)
Q Consensus 173 ~ 173 (173)
.
T Consensus 150 ~ 150 (186)
T 3t8k_A 150 K 150 (186)
T ss_dssp C
T ss_pred c
Confidence 3
No 101
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.91 E-value=2.9e-23 Score=124.01 Aligned_cols=91 Identities=31% Similarity=0.520 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNA 109 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 109 (173)
.|+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|+++ +.++..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~ 67 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKN 67 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence 4789999999999999999999999885 467889999999999999999999999999998 888999
Q ss_pred CCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 110 EQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 110 g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
|.||+|+|+..++.+++++|+++|
T Consensus 68 g~t~l~~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 68 GRTPLHLAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999988
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.9e-25 Score=164.42 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=101.8
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCC--CC
Q 030660 28 NWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL--GY 105 (173)
Q Consensus 28 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~--~~ 105 (173)
+..++||||+|++.|+.++|++|++.|+.... ....+..|.||||+|+..|+.+++++|+++|++.. +.
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~---------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i 159 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEI---------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI 159 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS---------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHH---------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc
Confidence 34556999999999999999999999873211 11234467789999999999999999999986420 12
Q ss_pred CCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccc--cCCCCCcHHHHHH-HhCCCcHHHHHHhcccc
Q 030660 106 LNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNH--RLPEELTLLHSAV-MRQNYGEPMIFISLNKC 169 (173)
Q Consensus 106 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~ll~~~~~ 169 (173)
.+.. .||||.|+..|+.+++++|+++| ++++. .+..|.||||+|+ ..|+.+++++|++.|++
T Consensus 160 ~~~~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~ 224 (376)
T 2aja_A 160 QAEN-YHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224 (376)
T ss_dssp SHHH-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred CCCC-CCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence 2222 89999999999999999999998 88776 7788899999999 99999999999987753
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=4.5e-23 Score=157.15 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=106.6
Q ss_pred cchHHHHHHHHhcccchhcc------CCCCCcHHHHHHH---hCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCc
Q 030660 8 TMDHELLNVLRRRDSLLRKN------NWKGETPLHIAAR---VGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT 78 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t 78 (173)
.-+.+.++.|++.|++++.. +..|+||||+||. .|+.+++++|++.|+++ +..|..|+|
T Consensus 142 ~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v------------n~~d~~g~T 209 (497)
T 3lvq_E 142 NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------------DAKAADGNT 209 (497)
T ss_dssp HTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT------------TCCCSSSCC
T ss_pred ccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC------------CccCCCCCc
Confidence 34678999999999999987 8899999999987 89999999999999985 467889999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCccccc
Q 030660 79 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHR 140 (173)
Q Consensus 79 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 140 (173)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|+++| ++++..
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~~~ 269 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ-AGTFAF 269 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C-----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 999999999999999999999999 889999999999999999999999999999 877754
No 104
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=5.1e-26 Score=167.50 Aligned_cols=143 Identities=12% Similarity=0.022 Sum_probs=116.7
Q ss_pred chHHHHHHHHhcccch---hccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHh
Q 030660 9 MDHELLNVLRRRDSLL---RKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVR 85 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~ 85 (173)
-+.+++++|++.|... +..+..|.||||+|+..|+.++|++|+++|+++.. .+..+.. .||||+|+.
T Consensus 103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~---------~~i~~~~-~TpLh~Aa~ 172 (376)
T 2aja_A 103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM---------AMIQAEN-YHAFRLAAE 172 (376)
T ss_dssp CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH---------HHHSHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc---------cccCCCC-CCHHHHHHH
Confidence 4678999999998722 23345678999999999999999999999964110 0112222 899999999
Q ss_pred cCCHHHHHHHHhcCCCCCCC--CCCCCCCHHHHHH-hcCcHHHHHHHHhcCCCcccccCCCCCcHHHHHHHhCCCcHHHH
Q 030660 86 NKHENVVRMLVKKDRIPLGY--LNNAEQTPLSIAI-DSSLTDIACFIIDQRPESLNHRLPEELTLLHSAVMRQNYGEPMI 162 (173)
Q Consensus 86 ~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 162 (173)
.|+.+++++|+++|+++ +. .+..|.||||+|+ ..|+.+++++|+++| + .|.||+++|+..|+.+++++
T Consensus 173 ~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~~evv~l 243 (376)
T 2aja_A 173 NGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGEKYVNPF 243 (376)
T ss_dssp TTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTTTTHHHH
T ss_pred CCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCCHHHHHH
Confidence 99999999999999876 44 6778999999999 999999999999866 3 27999999999999999999
Q ss_pred HHhccccc
Q 030660 163 FISLNKCL 170 (173)
Q Consensus 163 ll~~~~~~ 170 (173)
|+++|+++
T Consensus 244 L~~~ga~~ 251 (376)
T 2aja_A 244 IARHVNRL 251 (376)
T ss_dssp HHHHHHHH
T ss_pred HHhcCccc
Confidence 99998865
No 105
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=4.9e-23 Score=131.44 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=95.5
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660 71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150 (173)
Q Consensus 71 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 150 (173)
..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++++ ++++..+..|.||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence 56789999999999999999999999999988 888999999999999999999999999999 9999999999999999
Q ss_pred HHHhCCCcHHHHHHhcccccCC
Q 030660 151 AVMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 151 a~~~~~~~~~~~ll~~~~~~~~ 172 (173)
|+..|+.+++++|+++|+++++
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~ 104 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNA 104 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCC
Confidence 9999999999999999999875
No 106
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=3.2e-23 Score=142.43 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=100.1
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhh-CcccCCCCCCCCCccccccCCCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKY-APAITNGTESEPESLLRITDDEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++.|.+++.++..|+||||+|+..|+.+++++|++. |+++ +..+..|.||||+|+..|
T Consensus 84 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~------------~~~d~~g~tpL~~A~~~~ 151 (222)
T 3ehr_A 84 GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL------------NQQNKLGDTALHAAAWKG 151 (222)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC------------CCCCTTSCCHHHHHHHHT
T ss_pred CcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc------------cccCCCCCCHHHHHHHcC
Confidence 367899999999999999999999999999999999999999998 8774 567889999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCC
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEE 144 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g 144 (173)
+.+++++|++.|+++ +.++..|.||+++|+..+..++++.|+..+ +.....+..+
T Consensus 152 ~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~ 206 (222)
T 3ehr_A 152 YADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED 206 (222)
T ss_dssp CHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred CHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence 999999999999998 889999999999999999999999999888 6665555433
No 107
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.1e-22 Score=127.44 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=91.5
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 030660 72 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHSA 151 (173)
Q Consensus 72 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a 151 (173)
.+..|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++++ ++++..|..|.||||+|
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSA 80 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHH
Confidence 4567889999999999999999999999988 888999999999999999999999999999 99999999999999999
Q ss_pred HHhCCCcHHHHHHhcccccCC
Q 030660 152 VMRQNYGEPMIFISLNKCLSI 172 (173)
Q Consensus 152 ~~~~~~~~~~~ll~~~~~~~~ 172 (173)
+..|+.+++++|+++|+++++
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~ 101 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTV 101 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTC
T ss_pred HHcCCHHHHHHHHHcCCCCCC
Confidence 999999999999999999875
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.89 E-value=3.6e-23 Score=128.23 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=94.6
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 030660 71 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTLLHS 150 (173)
Q Consensus 71 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 150 (173)
..|..|.||||.|+..++.+++++|++.++++ +..+..|.||||.|+..++.+++++|++++ ++++..|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence 46889999999999999999999999999988 888999999999999999999999999999 9999999999999999
Q ss_pred HHHhCCCcHHHHHHhcccccC
Q 030660 151 AVMRQNYGEPMIFISLNKCLS 171 (173)
Q Consensus 151 a~~~~~~~~~~~ll~~~~~~~ 171 (173)
|+..|+.+++++|+++|++++
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n 102 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVN 102 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHH
T ss_pred HHHCCCHHHHHHHHHcCCCCC
Confidence 999999999999999999875
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.89 E-value=2.7e-22 Score=147.27 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=105.7
Q ss_pred chHHHHHHHHhcccchhccC--CCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660 9 MDHELLNVLRRRDSLLRKNN--WKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~ 86 (173)
-+.+++++|++.|++++..+ ..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv------------n~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV------------NQADSAGRGPLHHATIL 278 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC------------CCCCCCCCCHHHHHHHc
Confidence 57899999999999999998 88999999999999999999999999885 46788999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHhCC--CcHHHH
Q 030660 87 KHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPE--SLNHRLPEELTLLHSAVMRQN--YGEPMI 162 (173)
Q Consensus 87 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~a~~~~~--~~~~~~ 162 (173)
|+.+++++|+..|+++ +..+..|.||||+|+..++.+++++|+..+.. +....+..+.|+++++..... .+..+.
T Consensus 279 g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~~~ek 357 (368)
T 3jue_A 279 GHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEK 357 (368)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------------------
T ss_pred CcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999 88999999999999999999999999876522 233455677888887765542 234445
Q ss_pred HHhccccc
Q 030660 163 FISLNKCL 170 (173)
Q Consensus 163 ll~~~~~~ 170 (173)
|...+.++
T Consensus 358 l~r~~~~~ 365 (368)
T 3jue_A 358 LSRRSHDL 365 (368)
T ss_dssp --------
T ss_pred HHhcCCCc
Confidence 55544443
No 110
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.88 E-value=5.2e-22 Score=140.79 Aligned_cols=114 Identities=24% Similarity=0.341 Sum_probs=105.5
Q ss_pred ccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhc
Q 030660 7 TTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRN 86 (173)
Q Consensus 7 ~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~ 86 (173)
...+.+++++|++.|...+..+..|+||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~------------n~~d~~G~TpLh~A~~~ 226 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV------------NVQDDDGSTALMCACEH 226 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT------------TCCCTTSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC------------CCCCCCCCCHHHHHHHC
Confidence 456788999999999988888999999999999999999999999999885 46788999999999999
Q ss_pred CCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 87 KHENVVRMLVK-KDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 87 ~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
|+.+++++|++ .|+++ +..+..|.||+|+|+..++.+++++|+++.
T Consensus 227 g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 227 GHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 99999999999 78888 889999999999999999999999999876
No 111
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=1.2e-21 Score=139.09 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=103.1
Q ss_pred cchHHHHHHHHhcccc------hhccCCCCCcHHHHHHHh---CCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCc
Q 030660 8 TMDHELLNVLRRRDSL------LRKNNWKGETPLHIAARV---GDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNT 78 (173)
Q Consensus 8 ~~~~~~~~~l~~~g~~------~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t 78 (173)
.-+.+.+..+++.|.+ ++..+..|+||||+|+.. ++.+++++|+++|+++ +..|..|.|
T Consensus 140 ~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i------------n~~d~~g~T 207 (278)
T 1dcq_A 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------------DKQTGKGST 207 (278)
T ss_dssp TTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------------TCCCTTCCC
T ss_pred hcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc------------cccCCCCCC
Confidence 3467788889999988 444588999999999999 8999999999999885 467889999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcC
Q 030660 79 PLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQR 133 (173)
Q Consensus 79 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~ 133 (173)
|||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..++.+++++|++++
T Consensus 208 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 208 ALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999998 899999999999999999999999999988
No 112
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=4.9e-21 Score=133.50 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=99.9
Q ss_pred chHHHHHHHHhcccchhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccC-CCCCcHHHHHHhcC
Q 030660 9 MDHELLNVLRRRDSLLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITD-DEGNTPLHNAVRNK 87 (173)
Q Consensus 9 ~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~a~~~~ 87 (173)
-+.+++++|++ |.+++.++..|+||||+|+..|+.+++++|++.|++++ ..+ ..|.||||+|+..|
T Consensus 56 g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 56 ADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD------------HRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp TCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------CCCSSSCCCHHHHHHHTT
T ss_pred CCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------cCCCCCCCCHHHHHHHcC
Confidence 46789999999 99999999999999999999999999999999998863 444 77999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH----------------hcCcHHHHHHHHhc
Q 030660 88 HENVVRMLVKKDRIPLGYLNNAEQTPLSIAI----------------DSSLTDIACFIIDQ 132 (173)
Q Consensus 88 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~----------------~~~~~~~~~~Ll~~ 132 (173)
+.+++++|+++|+++ +.++..|.||+|+|+ ..|+.+++++|+++
T Consensus 123 ~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 123 RPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 999999999999998 888999999999888 55778899999875
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=8.1e-21 Score=116.82 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=84.9
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHhcCcHHHHHHHHhcCCCcccccCCCCCcH
Q 030660 68 LLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYLNNAEQTPLSIAIDSSLTDIACFIIDQRPESLNHRLPEELTL 147 (173)
Q Consensus 68 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 147 (173)
.....+..|.|+||+|+..|+.+++++|++.++++ +.++..|.||||+|+..++.+++++|+++| ++++..|..|.||
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tp 93 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTA 93 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcH
Confidence 34467889999999999999999999999999988 888999999999999999999999999998 9999999999999
Q ss_pred HHHHHHhCCCcHHHHH
Q 030660 148 LHSAVMRQNYGEPMIF 163 (173)
Q Consensus 148 l~~a~~~~~~~~~~~l 163 (173)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.83 E-value=4.5e-20 Score=113.44 Aligned_cols=94 Identities=27% Similarity=0.311 Sum_probs=82.8
Q ss_pred chhccCCCCCcHHHHHHHhCCHHHHHHHHhhCcccCCCCCCCCCccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 030660 23 LLRKNNWKGETPLHIAARVGDPAIVSTILKYAPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 102 (173)
Q Consensus 23 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~ 102 (173)
.....+.+|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|+++
T Consensus 16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~ 83 (110)
T 2zgd_A 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADV------------AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83 (110)
T ss_dssp ------CCHHHHHHHHHHHTCHHHHHHHHHTTCCT------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 45567889999999999999999999999999874 467889999999999999999999999999988
Q ss_pred CCCCCCCCCCHHHHHHhcCcHHHHHHH
Q 030660 103 LGYLNNAEQTPLSIAIDSSLTDIACFI 129 (173)
Q Consensus 103 ~~~~~~~g~t~l~~a~~~~~~~~~~~L 129 (173)
+.++..|.||+|+|+..++.+++++|
T Consensus 84 -~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 84 -XAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred -cccccCCCcHHHHHHHcCCHHHHHHh
Confidence 88899999999999999999999876
No 115
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=57.94 E-value=18 Score=26.98 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=44.8
Q ss_pred CcHHHHH--HHhCCHHHHHHHHhhCcccCCCCCCCCCccccc--cCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 030660 32 ETPLHIA--ARVGDPAIVSTILKYAPAITNGTESEPESLLRI--TDDEGNTPLHNAVRNKHENVVRMLVKK 98 (173)
Q Consensus 32 ~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~ 98 (173)
|..|..+ +..|+...|+..+..|.++.-.....-..+++. .-..|.|.+|+|++..+.+++..|+..
T Consensus 21 w~~l~ac~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 21 WLFLNACVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 4555544 466999999988888877643221110111111 235799999999999999999988873
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=52.01 E-value=6.6 Score=18.35 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=14.1
Q ss_pred HHHHHHhCCCcHHHHHHhc
Q 030660 148 LHSAVMRQNYGEPMIFISL 166 (173)
Q Consensus 148 l~~a~~~~~~~~~~~ll~~ 166 (173)
+..||..|+++.++.|-..
T Consensus 17 iyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 5678888888888877543
No 117
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=39.74 E-value=70 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHhhC
Q 030660 30 KGETPLHIAARVGDPAIVSTILKYA 54 (173)
Q Consensus 30 ~g~t~L~~A~~~~~~~~v~~Ll~~~ 54 (173)
-|.|.+|+|++..+.+++..|+..+
T Consensus 68 ~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 68 VGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCchhhhhhhhhhhhhHHHHhhhcc
Confidence 5899999999999999999999754
No 118
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.62 E-value=16 Score=22.17 Aligned_cols=29 Identities=7% Similarity=-0.058 Sum_probs=15.6
Q ss_pred ccccCCCCCcHHHHHHHhCCCcHHHHHHh
Q 030660 137 LNHRLPEELTLLHSAVMRQNYGEPMIFIS 165 (173)
Q Consensus 137 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~ 165 (173)
+...|....-++..|+..++.++++-||.
T Consensus 28 L~KkDkLykDAietAa~S~d~elaEeLL~ 56 (125)
T 3qil_A 28 LAKKDSLYKDAMQYASESKDTELAEELLQ 56 (125)
T ss_dssp CCSCCCCSSHHHHTTTSSCCSHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555556666666666555554443
No 119
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.64 E-value=83 Score=16.90 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCCCccchHHHHHHHHhcccchhccCCCCCcHHHHHHHhC
Q 030660 3 QELPTTMDHELLNVLRRRDSLLRKNNWKGETPLHIAARVG 42 (173)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~g~t~L~~A~~~~ 42 (173)
..|+++...+++++|..+|. .++|++|-..|
T Consensus 5 ~qls~~~ee~I~~fL~~~Gp---------~~AL~IAK~LG 35 (72)
T 3eyi_A 5 PQFSQQREEDIYRFLKDNGP---------QRALVIAQALG 35 (72)
T ss_dssp CCCSSHHHHHHHHHHHHHCS---------EEHHHHHHHTT
T ss_pred hhhhhhhHHHHHHHHHHcCC---------chHHHHHHHhC
Confidence 35666667779999988875 36888887766
Done!