Query 030661
Match_columns 173
No_of_seqs 194 out of 1505
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02945 nicotinamide-nucleoti 100.0 1.9E-39 4.2E-44 270.0 11.9 147 1-147 1-172 (236)
2 COG1057 NadD Nicotinic acid mo 100.0 4.4E-39 9.5E-44 262.2 11.2 126 20-148 2-139 (197)
3 PRK06973 nicotinic acid mononu 100.0 3.4E-37 7.4E-42 258.1 12.3 122 20-146 21-158 (243)
4 TIGR00482 nicotinate (nicotina 100.0 1.2E-36 2.6E-41 245.5 10.4 120 25-147 1-131 (193)
5 PRK00071 nadD nicotinic acid m 100.0 9.3E-36 2E-40 241.9 12.1 125 21-148 4-139 (203)
6 PRK08887 nicotinic acid mononu 100.0 1.1E-34 2.4E-39 231.8 12.1 131 19-158 1-147 (174)
7 PRK07152 nadD putative nicotin 100.0 2.3E-34 5E-39 250.3 11.4 121 23-146 3-134 (342)
8 cd02165 NMNAT Nicotinamide/nic 100.0 9.4E-34 2E-38 228.0 11.0 121 23-147 1-132 (192)
9 cd09286 NMNAT_Eukarya Nicotina 100.0 1.3E-32 2.9E-37 227.8 10.0 127 22-148 1-163 (225)
10 TIGR01510 coaD_prev_kdtB pante 99.9 9E-26 2E-30 176.9 9.7 97 24-137 2-100 (155)
11 PF01467 CTP_transf_2: Cytidyl 99.9 4.5E-25 9.8E-30 167.0 5.5 109 25-148 1-120 (157)
12 cd02163 PPAT Phosphopantethein 99.9 5.3E-24 1.1E-28 166.7 9.8 94 24-134 2-97 (153)
13 PRK00168 coaD phosphopantethei 99.9 7.8E-23 1.7E-27 161.0 10.8 95 23-134 3-99 (159)
14 KOG3199 Nicotinamide mononucle 99.9 1.8E-21 3.8E-26 159.1 9.3 140 15-154 2-173 (234)
15 cd02039 cytidylyltransferase_l 99.8 1.4E-18 2.9E-23 130.7 11.7 126 24-154 2-141 (143)
16 cd02167 NMNAT_NadR Nicotinamid 99.8 9.1E-19 2E-23 138.0 8.6 73 24-101 2-74 (158)
17 PRK13964 coaD phosphopantethei 99.7 1.3E-17 2.8E-22 129.6 8.2 67 23-97 3-69 (140)
18 TIGR01526 nadR_NMN_Atrans nico 99.7 8.6E-17 1.9E-21 139.6 8.9 71 23-98 3-74 (325)
19 cd02166 NMNAT_Archaea Nicotina 99.7 4.9E-16 1.1E-20 122.9 12.2 123 24-157 2-135 (163)
20 TIGR01527 arch_NMN_Atrans nico 99.7 1.3E-15 2.8E-20 121.3 12.1 122 24-155 2-131 (165)
21 COG0669 CoaD Phosphopantethein 99.6 5.2E-16 1.1E-20 122.0 7.8 69 23-99 4-72 (159)
22 cd02168 NMNAT_Nudix Nicotinami 99.6 1.7E-15 3.8E-20 121.9 10.2 72 24-100 2-77 (181)
23 PRK01153 nicotinamide-nucleoti 99.6 3.2E-15 6.8E-20 119.8 10.4 108 24-141 3-116 (174)
24 PRK05379 bifunctional nicotina 99.6 1.2E-14 2.6E-19 127.0 10.9 76 20-100 5-82 (340)
25 TIGR00125 cyt_tran_rel cytidyl 99.6 4.8E-15 1E-19 99.3 6.6 62 24-90 2-65 (66)
26 cd02170 cytidylyltransferase c 99.5 3.3E-13 7E-18 102.8 11.7 120 24-157 4-133 (136)
27 PRK08099 bifunctional DNA-bind 99.5 1E-13 2.2E-18 123.6 9.7 89 9-99 38-132 (399)
28 cd02169 Citrate_lyase_ligase C 99.4 2.2E-13 4.8E-18 117.4 8.1 69 20-99 114-182 (297)
29 cd02164 PPAT_CoAS phosphopante 99.4 4.9E-13 1.1E-17 104.1 8.7 81 25-107 3-86 (143)
30 PRK00777 phosphopantetheine ad 99.4 1.3E-12 2.8E-17 102.7 8.9 58 25-88 5-65 (153)
31 TIGR00124 cit_ly_ligase [citra 99.4 9.3E-13 2E-17 115.1 8.2 69 20-99 139-207 (332)
32 smart00764 Citrate_ly_lig Citr 99.4 2.2E-12 4.8E-17 104.0 7.5 60 28-97 6-65 (182)
33 cd02156 nt_trans nucleotidyl t 99.3 4.3E-12 9.4E-17 92.9 6.3 57 24-85 2-58 (105)
34 TIGR00339 sopT ATP sulphurylas 99.3 1.7E-11 3.6E-16 109.1 10.2 99 10-119 174-279 (383)
35 cd02171 G3P_Cytidylyltransfera 99.3 3.2E-11 6.8E-16 91.1 9.7 124 21-159 2-128 (129)
36 cd02174 CCT CTP:phosphocholine 99.2 2.8E-10 6.1E-15 89.2 10.6 124 25-160 6-138 (150)
37 PRK13671 hypothetical protein; 99.1 9.3E-11 2E-15 101.2 7.3 55 28-85 7-61 (298)
38 PRK13793 nicotinamide-nucleoti 99.1 1.9E-10 4.2E-15 94.0 8.6 65 21-90 4-68 (196)
39 cd02173 ECT CTP:phosphoethanol 99.1 1.4E-09 2.9E-14 85.5 10.9 122 23-155 4-135 (152)
40 PLN02406 ethanolamine-phosphat 99.0 1.9E-09 4.1E-14 96.8 11.6 143 2-156 36-187 (418)
41 PTZ00308 ethanolamine-phosphat 98.9 4.6E-09 9.9E-14 92.7 9.6 129 16-155 187-325 (353)
42 COG1056 NadR Nicotinamide mono 98.9 4.1E-09 8.9E-14 84.6 6.1 62 22-88 4-65 (172)
43 cd02064 FAD_synthetase_N FAD s 98.8 2.3E-08 5.1E-13 79.9 9.5 69 25-98 3-79 (180)
44 TIGR01518 g3p_cytidyltrns glyc 98.5 8.2E-07 1.8E-11 66.9 9.0 115 26-154 3-122 (125)
45 PLN02388 phosphopantetheine ad 98.4 1E-06 2.3E-11 71.1 8.5 68 19-89 18-86 (177)
46 cd02172 RfaE_N N-terminal doma 98.4 3.1E-06 6.8E-11 65.6 10.8 60 21-84 5-64 (144)
47 COG0615 TagD Cytidylyltransfer 98.3 1.5E-06 3.3E-11 67.7 6.7 112 26-150 6-124 (140)
48 COG1019 Predicted nucleotidylt 98.3 9.1E-07 2E-11 69.7 5.3 67 18-88 3-69 (158)
49 TIGR02199 rfaE_dom_II rfaE bif 98.3 3.4E-06 7.4E-11 65.4 8.1 122 20-157 11-142 (144)
50 PRK01170 phosphopantetheine ad 98.3 2.2E-06 4.9E-11 74.9 6.6 69 22-95 2-71 (322)
51 PTZ00308 ethanolamine-phosphat 98.2 8E-06 1.7E-10 72.2 8.3 122 22-157 12-143 (353)
52 PF08218 Citrate_ly_lig: Citra 98.0 2.5E-05 5.5E-10 63.1 6.7 57 29-95 7-63 (182)
53 PLN02413 choline-phosphate cyt 97.9 0.00014 2.9E-09 62.8 11.2 136 17-160 23-166 (294)
54 PRK11316 bifunctional heptose 97.6 0.00036 7.7E-09 62.9 8.7 120 20-155 340-469 (473)
55 KOG3351 Predicted nucleotidylt 97.2 0.00039 8.4E-09 59.1 4.1 68 16-89 138-209 (293)
56 PRK05627 bifunctional riboflav 97.1 0.0035 7.6E-08 54.4 8.7 70 25-97 17-92 (305)
57 PRK07143 hypothetical protein; 97.0 0.0087 1.9E-07 51.5 10.8 68 26-98 20-88 (279)
58 PRK13670 hypothetical protein; 97.0 0.0018 3.9E-08 58.0 6.4 59 21-85 2-62 (388)
59 PLN02406 ethanolamine-phosphat 97.0 0.0014 3.1E-08 59.3 5.5 124 19-156 249-386 (418)
60 PF05636 HIGH_NTase1: HIGH Nuc 96.8 0.0019 4.1E-08 57.9 5.3 54 28-84 8-61 (388)
61 PF06574 FAD_syn: FAD syntheta 96.7 0.0024 5.1E-08 50.3 4.6 71 27-99 11-86 (157)
62 COG3053 CitC Citrate lyase syn 96.6 0.0071 1.5E-07 52.8 7.2 66 19-95 144-209 (352)
63 TIGR00083 ribF riboflavin kina 96.3 0.005 1.1E-07 53.1 4.4 67 26-98 3-77 (288)
64 COG2046 MET3 ATP sulfurylase ( 96.1 0.02 4.2E-07 51.3 7.2 72 8-89 172-243 (397)
65 PF01747 ATP-sulfurylase: ATP- 96.0 0.044 9.4E-07 45.6 8.3 83 9-100 10-95 (215)
66 cd00517 ATPS ATP-sulfurylase. 95.5 0.06 1.3E-06 47.8 7.7 82 10-99 147-231 (353)
67 COG1323 Predicted nucleotidylt 95.4 0.026 5.6E-07 50.3 4.9 54 28-85 8-62 (358)
68 KOG2803 Choline phosphate cyti 94.8 0.056 1.2E-06 47.5 5.2 121 24-155 11-137 (358)
69 PRK04149 sat sulfate adenylylt 94.2 0.18 3.9E-06 45.4 7.3 81 9-99 176-259 (391)
70 PRK05537 bifunctional sulfate 93.2 0.33 7.2E-06 45.6 7.5 81 10-99 177-259 (568)
71 COG0196 RibF FAD synthase [Coe 93.1 0.15 3.2E-06 44.6 4.6 71 27-100 21-97 (304)
72 KOG2804 Phosphorylcholine tran 92.8 0.3 6.5E-06 42.8 6.1 136 15-160 57-200 (348)
73 KOG2803 Choline phosphate cyti 89.0 0.8 1.7E-05 40.4 5.0 68 22-94 199-269 (358)
74 COG2870 RfaE ADP-heptose synth 88.2 1.9 4.1E-05 39.4 7.0 114 23-150 334-458 (467)
75 PLN02660 pantoate--beta-alanin 87.8 1.1 2.4E-05 38.8 5.2 50 33-85 32-84 (284)
76 cd00560 PanC Pantoate-beta-ala 85.8 2.7 5.8E-05 36.2 6.5 50 33-85 33-85 (277)
77 PRK00380 panC pantoate--beta-a 83.0 3.8 8.1E-05 35.4 6.2 50 33-85 33-85 (281)
78 TIGR00018 panC pantoate--beta- 81.8 4.7 0.0001 34.9 6.3 50 33-85 33-85 (282)
79 COG1908 FrhD Coenzyme F420-red 78.1 19 0.00042 27.7 7.8 57 22-88 33-89 (132)
80 PF02569 Pantoate_ligase: Pant 70.1 10 0.00022 32.8 5.2 61 20-85 22-85 (280)
81 PRK13477 bifunctional pantoate 70.0 10 0.00023 35.4 5.6 60 21-85 21-83 (512)
82 PRK13397 3-deoxy-7-phosphohept 66.8 24 0.00051 30.1 6.7 105 21-151 42-165 (250)
83 PF00455 DeoRC: DeoR C termina 66.5 6.4 0.00014 30.7 3.0 71 9-86 52-123 (161)
84 PRK10906 DNA-binding transcrip 66.2 9.3 0.0002 32.1 4.2 53 9-62 124-177 (252)
85 COG1167 ARO8 Transcriptional r 65.9 16 0.00034 33.3 5.9 42 51-98 228-269 (459)
86 PF00837 T4_deiodinase: Iodoth 65.1 74 0.0016 27.0 9.3 80 19-99 102-192 (237)
87 COG0414 PanC Panthothenate syn 61.6 16 0.00034 31.8 4.7 61 20-85 22-85 (285)
88 KOG4238 Bifunctional ATP sulfu 58.5 26 0.00057 32.1 5.7 56 28-88 422-481 (627)
89 PRK10681 DNA-binding transcrip 52.9 21 0.00045 29.9 4.0 52 10-62 126-178 (252)
90 PF02662 FlpD: Methyl-viologen 50.9 76 0.0016 23.8 6.4 62 17-88 27-88 (124)
91 PF13793 Pribosyltran_N: N-ter 50.3 1E+02 0.0022 22.8 7.6 80 5-84 32-114 (116)
92 PRK12595 bifunctional 3-deoxy- 48.1 97 0.0021 27.6 7.7 42 108-149 215-266 (360)
93 PRK13509 transcriptional repre 44.3 28 0.00061 29.1 3.5 49 9-61 125-176 (251)
94 PF00578 AhpC-TSA: AhpC/TSA fa 41.9 1E+02 0.0023 21.5 5.8 40 20-59 27-66 (124)
95 PRK10434 srlR DNA-bindng trans 40.2 51 0.0011 27.6 4.4 52 10-62 125-178 (256)
96 cd05535 POLBc_epsilon DNA poly 36.8 92 0.002 30.0 5.9 84 26-117 141-234 (621)
97 PRK10411 DNA-binding transcrip 35.2 48 0.001 27.5 3.5 50 10-62 126-178 (240)
98 PRK00553 ribose-phosphate pyro 32.2 2.6E+02 0.0056 24.6 7.7 81 5-85 41-125 (332)
99 COG0026 PurK Phosphoribosylami 32.2 1.3E+02 0.0029 27.2 6.0 123 20-157 2-130 (375)
100 PRK00979 tetrahydromethanopter 31.9 1.1E+02 0.0024 26.9 5.3 46 74-119 161-219 (308)
101 KOG3042 Panthothenate syntheta 30.9 59 0.0013 27.7 3.3 40 19-63 23-62 (283)
102 cd02969 PRX_like1 Peroxiredoxi 30.8 1.5E+02 0.0032 22.5 5.4 45 18-62 24-68 (171)
103 cd02970 PRX_like2 Peroxiredoxi 30.2 1.8E+02 0.0039 20.9 5.6 39 20-58 25-63 (149)
104 PRK15481 transcriptional regul 30.1 1.7E+02 0.0036 25.9 6.3 31 52-88 214-244 (431)
105 PRK13608 diacylglycerol glucos 28.9 1.2E+02 0.0027 26.4 5.2 26 20-46 202-227 (391)
106 PF07429 Glyco_transf_56: 4-al 28.8 1.3E+02 0.0028 27.2 5.2 38 21-59 185-222 (360)
107 PRK14534 cysS cysteinyl-tRNA s 28.6 79 0.0017 29.4 4.0 39 20-59 20-66 (481)
108 COG0528 PyrH Uridylate kinase 28.4 68 0.0015 27.2 3.3 38 19-58 124-161 (238)
109 COG2390 DeoR Transcriptional r 28.4 38 0.00082 29.8 1.8 48 8-58 41-88 (321)
110 PRK14536 cysS cysteinyl-tRNA s 27.7 93 0.002 29.0 4.3 38 20-58 22-67 (490)
111 PRK09257 aromatic amino acid a 27.4 2.3E+02 0.0051 24.6 6.7 32 51-88 173-204 (396)
112 PLN02369 ribose-phosphate pyro 27.4 3.7E+02 0.0081 23.1 7.8 81 5-85 23-107 (302)
113 PRK13354 tyrosyl-tRNA syntheta 27.3 3.3E+02 0.0071 24.7 7.7 32 29-60 43-76 (410)
114 KOG0634 Aromatic amino acid am 25.9 3.1E+02 0.0066 25.6 7.2 98 54-160 208-342 (472)
115 PRK09802 DNA-binding transcrip 25.7 77 0.0017 26.8 3.2 52 10-62 140-192 (269)
116 cd00672 CysRS_core catalytic c 23.9 44 0.00096 27.4 1.4 39 20-59 21-65 (213)
117 PF13905 Thioredoxin_8: Thiore 23.8 2.3E+02 0.005 18.9 5.5 39 20-58 2-41 (95)
118 PF14034 Spore_YtrH: Sporulati 23.5 30 0.00066 25.7 0.3 11 23-34 50-60 (102)
119 PRK12268 methionyl-tRNA synthe 23.1 79 0.0017 29.3 3.0 39 20-59 2-50 (556)
120 PF11909 NdhN: NADH-quinone ox 23.0 14 0.0003 29.2 -1.7 27 31-61 67-93 (154)
121 PLN02297 ribose-phosphate pyro 22.8 4.7E+02 0.01 23.0 7.7 80 5-84 49-132 (326)
122 COG1611 Predicted Rossmann fol 22.3 1.8E+02 0.0039 23.8 4.7 43 16-58 11-53 (205)
123 PF08386 Abhydrolase_4: TAP-li 22.0 73 0.0016 22.7 2.1 38 19-59 34-71 (103)
124 PF07767 Nop53: Nop53 (60S rib 21.7 76 0.0017 28.2 2.5 23 26-48 183-205 (387)
125 PRK03092 ribose-phosphate pyro 21.4 5.3E+02 0.012 22.2 7.8 81 5-85 21-105 (304)
126 PRK00260 cysS cysteinyl-tRNA s 21.4 1.2E+02 0.0025 27.8 3.7 31 28-59 32-68 (463)
127 TIGR02321 Pphn_pyruv_hyd phosp 21.2 4.9E+02 0.011 22.4 7.3 129 8-148 5-159 (290)
128 PF08747 DUF1788: Domain of un 20.1 55 0.0012 24.8 1.1 41 18-59 60-102 (126)
No 1
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=100.00 E-value=1.9e-39 Score=270.02 Aligned_cols=147 Identities=64% Similarity=0.911 Sum_probs=137.4
Q ss_pred CCCCCChhhhhcccc-cCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHH
Q 030661 1 MDVPLPLEKLSLESK-TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRI 79 (173)
Q Consensus 1 ~~~~~p~~~~~~~~~-~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl 79 (173)
||+|+|+++|+..++ .+++..++++|||||||||+||+.+|+.|.+.+++|++++||++.+|.++++.|+..+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl 80 (236)
T PLN02945 1 MDVPLPTEKLSCGANSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRI 80 (236)
T ss_pred CCCCchHHHHhhhhcCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHH
Confidence 899999999999996 6788899999999999999999999999999999999999999999998888888889999999
Q ss_pred HHHHHHhcCCCCeEEeeccccCCcccchHHHHHHHHHHc--------C---------CcccCCccc---hH----HHhcC
Q 030661 80 NLCNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFL--------I---------EAGLISTGK---KQ----NYIFP 135 (173)
Q Consensus 80 ~Ml~lai~~~~~i~v~~~E~~~~~~syT~~TL~~lk~~~--------p---------~D~l~~l~~---W~----e~L~~ 135 (173)
+|+++|+++++++.|++||+++++++||++||++++++| | +|++.+|++ |+ ++|++
T Consensus 81 ~Ml~lai~~~~~~~V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~~~l~~ 160 (236)
T PLN02945 81 QMCQLACEDSDFIMVDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDLLESFSTPGVWIPDQVRTICR 160 (236)
T ss_pred HHHHHHhcCCCCeEecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhHHHhcCCCCcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987 3 799999997 87 45999
Q ss_pred CccEEEEecCCc
Q 030661 136 PCSASVELSCMS 147 (173)
Q Consensus 136 ~~~~vV~~r~~~ 147 (173)
.|+|+|+.|.-.
T Consensus 161 ~~~~vV~~R~g~ 172 (236)
T PLN02945 161 DYGVVCIRREGQ 172 (236)
T ss_pred hCCEEEEeCCCC
Confidence 999999999753
No 2
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=4.4e-39 Score=262.24 Aligned_cols=126 Identities=24% Similarity=0.254 Sum_probs=117.6
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
++.++||||||||||+||+.+|++|.+++++|+|+|+|+.++|+|+ +++.+|.++|++|+++|+++.+.++|+++|+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~---~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKK---KKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCC---CccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 4455568999999999999999999999999999999999999987 3689999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHc-C---------CcccCCccchH--HHhcCCccEEEEecCCch
Q 030661 100 NQSGYQRTLTVLSRVKNFL-I---------EAGLISTGKKQ--NYIFPPCSASVELSCMSV 148 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~-p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~~ 148 (173)
+++++|||++||++|++++ | +|++.+|++|+ ++|+++|+|+|+.|.-..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~ 139 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYG 139 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhhhHHHHHHhCCEEEEecCCch
Confidence 9999999999999999555 4 89999999999 999999999999999884
No 3
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=3.4e-37 Score=258.14 Aligned_cols=122 Identities=18% Similarity=0.148 Sum_probs=112.3
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEEe
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVD 95 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~----~~i~v~ 95 (173)
.+.++||||||||||+||+.+|++|.+.+++|+|+|||++.+|+| +..+++++|++|+++|+++. +++.|+
T Consensus 21 ~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-----~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v~ 95 (243)
T PRK06973 21 PRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-----ADVSAAEHRLAMTRAAAASLVLPGVTVRVA 95 (243)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-----CCCCCHHHHHHHHHHHHHhccCCCceEEEe
Confidence 344667899999999999999999999999999999999988875 35689999999999999953 489999
Q ss_pred eccccCCcccchHHHHHHHHHHc-C---------CcccCCccchH--HHhcCCccEEEEecCC
Q 030661 96 PWEANQSGYQRTLTVLSRVKNFL-I---------EAGLISTGKKQ--NYIFPPCSASVELSCM 146 (173)
Q Consensus 96 ~~E~~~~~~syT~~TL~~lk~~~-p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~ 146 (173)
++|+++++++||++||++|+++| | +|+|.+|++|+ ++|+++|+|+|+.|.-
T Consensus 96 ~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~~~~~L~~~~~lvV~~R~g 158 (243)
T PRK06973 96 TDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWRDWRRLFDYAHLCAATRPG 158 (243)
T ss_pred HhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcccHHHHHHhCCEEEEECCC
Confidence 99999999999999999999999 5 89999999999 9999999999999975
No 4
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=100.00 E-value=1.2e-36 Score=245.52 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=113.5
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCcc
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGY 104 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~~ 104 (173)
||||||||||+||+.+++.|++.+++|+|+|+|+..+|+|.. ...+++++|++|+++|+++++++.|+++|++++++
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 479999999999999999999999999999999999999862 45589999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCc
Q 030661 105 QRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMS 147 (173)
Q Consensus 105 syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~ 147 (173)
|||++||++|+++|| +|++.+|++|+ ++|+++|+|+|+.|.-.
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~ 131 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELVHLVIVPRPGY 131 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhCcEEEEeCCCC
Confidence 999999999999997 89999999999 99999999999999753
No 5
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=9.3e-36 Score=241.88 Aligned_cols=125 Identities=19% Similarity=0.202 Sum_probs=116.1
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
+.+++|||||||||+||+.+++.|++.+++|+|+|+|+..+|+|. ++..++.++|++|+++|+++.+++.|+++|++
T Consensus 4 ~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~---~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 80 (203)
T PRK00071 4 KRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKP---QKPLAPLEHRLAMLELAIADNPRFSVSDIELE 80 (203)
T ss_pred cEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC---CCCCCCHHHHHHHHHHHhcCCCceEEeHHHHh
Confidence 345568999999999999999999999999999999999998875 24689999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCch
Q 030661 101 QSGYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMSV 148 (173)
Q Consensus 101 ~~~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~~ 148 (173)
+++++||++||++|++.|| +|++.+|++|+ ++|+++|+++|+.|.-..
T Consensus 81 ~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~R~g~~ 139 (203)
T PRK00071 81 RPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRWKRWEEILDLVHFVVVPRPGYP 139 (203)
T ss_pred CCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCCC
Confidence 9999999999999999998 89999999999 999999999999997643
No 6
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-34 Score=231.78 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=112.9
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC--CCeEEee
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDP 96 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~--~~i~v~~ 96 (173)
|++ ++||||||||||+||+.+|+++ + ++|+|+|+|+..+|.+ +..+++++|++|+++|+++. +++.|++
T Consensus 1 m~~-i~ifGGSFDP~H~GHl~ia~~~-~--~~d~v~~vP~~~~~~~-----k~~~~~~~R~~M~~~ai~~~~~~~~~v~~ 71 (174)
T PRK08887 1 MKK-IAVFGSAFNPPSLGHKSVIESL-S--HFDLVLLVPSIAHAWG-----KTMLDYETRCQLVDAFIQDLGLSNVQRSD 71 (174)
T ss_pred CCe-EEEeCCCCCCCCHHHHHHHHHh-h--cCCEEEEEECCCCccc-----CCCCCHHHHHHHHHHHHhccCCCceEEeh
Confidence 345 5568999999999999999994 3 6799999999854432 36689999999999999985 7999999
Q ss_pred ccccC---CcccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCchHHHHHHHHHH
Q 030661 97 WEANQ---SGYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMSVSLCLIYLIFH 158 (173)
Q Consensus 97 ~E~~~---~~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~~~~~~~~~~~~ 158 (173)
+|.++ ++++||++||++|+++|| +|++.+|++|+ ++|++.|+++|++|..-+|++.|-+.+.
T Consensus 72 ~E~~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~ 147 (174)
T PRK08887 72 IEQELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYKADEITQRWTVMACPEKVPIRSTDIRNALQ 147 (174)
T ss_pred HHhhhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCCHHHHHhhCeEEEeCCCCCcCHHHHHHHHH
Confidence 99988 789999999999999997 89999999999 9999999999999866666666666554
No 7
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=100.00 E-value=2.3e-34 Score=250.34 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=112.7
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
+++|||||||||+||+.+|+.|.+.+++|+|+|+|+..+|+|.. ....++++|++|+++|+++++++.|+++|++++
T Consensus 3 i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~---~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~ 79 (342)
T PRK07152 3 IAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKK---QKASNGEHRLNMLKLALKNLPKMEVSDFEIKRQ 79 (342)
T ss_pred EEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhhCCCeEEeHHHHhCC
Confidence 45679999999999999999999999999999999999999752 345556999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCC
Q 030661 103 GYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCM 146 (173)
Q Consensus 103 ~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~ 146 (173)
+++||++||++|+++|| +|++.+|++|+ ++|+++|+|+|+.|.-
T Consensus 80 ~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~~~~l~~~~~~iv~~R~g 134 (342)
T PRK07152 80 NVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKNIEEILKKVQIVVFKRKK 134 (342)
T ss_pred CCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccCHHHHHHhCCEEEEECCC
Confidence 99999999999999998 89999999999 9999999999999964
No 8
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=100.00 E-value=9.4e-34 Score=227.96 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=113.2
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
+++|||||||||+||+.+++.|.+.+++|+|+|+|+..+|.|. ...+++++|++|+++++++.+++.|+++|++++
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~ 76 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKP----PKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRD 76 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC----CCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCC
Confidence 3578999999999999999999999999999999998887653 477899999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCc
Q 030661 103 GYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMS 147 (173)
Q Consensus 103 ~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~ 147 (173)
+++||++||+++++.|| +|++.++++|+ ++|++.|+++|+.|...
T Consensus 77 ~~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~~~~i~~~~~~iv~~R~g~ 132 (192)
T cd02165 77 GPSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYDWEELLSLVHLVVAPRPGY 132 (192)
T ss_pred CCCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccCHHHHHHhCcEEEEeCCCC
Confidence 99999999999999997 89999999999 99999999999999753
No 9
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.98 E-value=1.3e-32 Score=227.85 Aligned_cols=127 Identities=50% Similarity=0.688 Sum_probs=113.3
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~-v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
++++|||||||||+||+.+|+.|.+.+++++ +.+++++.+|.++++.|+..+++++|++|+++|++++++++|++||.+
T Consensus 1 ~~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~~~~~~v~~~E~~ 80 (225)
T cd09286 1 VVLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQSSDWIRVDDWESL 80 (225)
T ss_pred CEEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHccCCCEEEEehhcc
Confidence 4788999999999999999999999999887 667777767776666677889999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHcC----------------------------CcccCCccc---hH----HHhcCCccEEEEecC
Q 030661 101 QSGYQRTLTVLSRVKNFLI----------------------------EAGLISTGK---KQ----NYIFPPCSASVELSC 145 (173)
Q Consensus 101 ~~~~syT~~TL~~lk~~~p----------------------------~D~l~~l~~---W~----e~L~~~~~~vV~~r~ 145 (173)
+++++||++||++++++|| +|++.+|++ |+ ++|+++|+|+|+.|.
T Consensus 81 ~~~~syT~~TL~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~fiiG~D~l~~l~~~~~W~~~~~e~ll~~~~~vv~~R~ 160 (225)
T cd09286 81 QPEWMRTAKVLRHHREEINNKYGGIEGAAKRVLDGSRREVKIMLLCGADLLESFGIPGLWKDADLEEILGEFGLVVVERT 160 (225)
T ss_pred CCccccHHHHHHHHHHHhcccccccccccccccccccCCceEEEEecHhHHHhcCCCCcCCHHHHHHHHHhCCEEEEeCC
Confidence 9999999999999998773 688899985 86 999999999999998
Q ss_pred Cch
Q 030661 146 MSV 148 (173)
Q Consensus 146 ~~~ 148 (173)
-..
T Consensus 161 g~~ 163 (225)
T cd09286 161 GSD 163 (225)
T ss_pred CCC
Confidence 643
No 10
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.93 E-value=9e-26 Score=176.89 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=83.5
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
++|||||||+|+||+.+++.|.+.+ |+|+|+|+ .+|+| +..++.++|++|+++|++++++++|+++|
T Consensus 2 ~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~-~~p~k-----~~~~~~~~R~~m~~~a~~~~~~~~v~~~e----- 68 (155)
T TIGR01510 2 ALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVA-KNPSK-----KPLFSLEERVELIKDATKHLPNVRVDVFD----- 68 (155)
T ss_pred EEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEc-CCCCC-----CCCcCHHHHHHHHHHHHhhCCCeEEcCcc-----
Confidence 5789999999999999999999997 99999998 56664 46789999999999999999999999999
Q ss_pred ccchHHHHHHHHHHcCCcccCCccchH--HHhcCCc
Q 030661 104 YQRTLTVLSRVKNFLIEAGLISTGKKQ--NYIFPPC 137 (173)
Q Consensus 104 ~syT~~TL~~lk~~~p~D~l~~l~~W~--e~L~~~~ 137 (173)
+||++|+++++..+ -+..+++|+ ++++++|
T Consensus 69 -~yt~dt~~~l~~~~---~i~G~~~~~~~~~~~~~~ 100 (155)
T TIGR01510 69 -GLLVDYAKELGATF---IVRGLRAATDFEYELQMA 100 (155)
T ss_pred -chHHHHHHHcCCCE---EEecCcchhhHHHHHHHH
Confidence 69999999998665 345678888 6666544
No 11
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.91 E-value=4.5e-25 Score=167.00 Aligned_cols=109 Identities=27% Similarity=0.307 Sum_probs=94.6
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCcc
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGY 104 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~~ 104 (173)
+|||||||+|.||+.++++|++.++.+.|+++|+..+|.+.. +..++.++|++|+++++.+.+++.|++||.+++
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~-- 75 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQD-- 75 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSS--
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhcCCccccchhHHhH--
Confidence 579999999999999999999999777799999999998762 478999999999999999999999999999887
Q ss_pred cchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCch
Q 030661 105 QRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMSV 148 (173)
Q Consensus 105 syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~~ 148 (173)
++.+| +|++.++++|+ +++++.++++|+.|....
T Consensus 76 ----------~~~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~ 120 (157)
T PF01467_consen 76 ----------KKKYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDD 120 (157)
T ss_dssp ----------HHHSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTT
T ss_pred ----------hhhccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCC
Confidence 56665 89999999999 999999999999998443
No 12
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.91 E-value=5.3e-24 Score=166.67 Aligned_cols=94 Identities=26% Similarity=0.276 Sum_probs=81.2
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
++|||||||+|+||+.++++|.+.+ |+|+|+|+. +|+ |+...+.++|++|+++|+++.+++.|+++|
T Consensus 2 ~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~-~~~-----k~~~~~~~~R~~ml~~a~~~~~~~~v~~~e----- 68 (153)
T cd02163 2 AVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAV-NPS-----KKPLFSLEERVELIREATKHLPNVEVDGFD----- 68 (153)
T ss_pred EEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcC-CCC-----CCCCCCHHHHHHHHHHHHcCCCCEEecCCc-----
Confidence 5789999999999999999999987 999999985 443 356799999999999999999999999986
Q ss_pred ccchHHHHHHHHHHcCCcccCCccchH--HHhc
Q 030661 104 YQRTLTVLSRVKNFLIEAGLISTGKKQ--NYIF 134 (173)
Q Consensus 104 ~syT~~TL~~lk~~~p~D~l~~l~~W~--e~L~ 134 (173)
+||++|+++++..| -+..+++|+ ++++
T Consensus 69 -s~t~~~l~~l~~~~---~i~G~d~~~~~e~~~ 97 (153)
T cd02163 69 -GLLVDFARKHGANV---IVRGLRAVSDFEYEF 97 (153)
T ss_pred -chHHHHHHHcCCCE---EEECCcchhhHHHHH
Confidence 99999999999887 456667777 5554
No 13
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.89 E-value=7.8e-23 Score=160.99 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=80.5
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
+++|||||||+|+||+.+++.|.+.+ |+|+|+|+. +|+ |++.+++++|++|+++|+++.+++.|+++|
T Consensus 3 igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~-~~~-----k~~~~~~~~R~~ml~~a~~~~~~v~v~~~e---- 70 (159)
T PRK00168 3 IAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAI-NPS-----KKPLFSLEERVELIREATAHLPNVEVVSFD---- 70 (159)
T ss_pred EEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECC-CCC-----CCCCCCHHHHHHHHHHHHcCCCCEEEecCC----
Confidence 34579999999999999999999997 999998775 443 357899999999999999999999999987
Q ss_pred cccchHHHHHHHHHHcCCcccCCccchH--HHhc
Q 030661 103 GYQRTLTVLSRVKNFLIEAGLISTGKKQ--NYIF 134 (173)
Q Consensus 103 ~~syT~~TL~~lk~~~p~D~l~~l~~W~--e~L~ 134 (173)
+||++|+++++..| -+..+++|+ +.++
T Consensus 71 --~~t~~~~~~~~~~~---~~~gl~~w~d~e~~~ 99 (159)
T PRK00168 71 --GLLVDFAREVGATV---IVRGLRAVSDFEYEF 99 (159)
T ss_pred --ccHHHHHHHcCCCE---EEecCcchhhHHHHH
Confidence 79999999887666 466777787 5554
No 14
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=99.85 E-value=1.8e-21 Score=159.06 Aligned_cols=140 Identities=41% Similarity=0.557 Sum_probs=121.7
Q ss_pred ccCCcceEEEEecCcCChhhHHHHHHHHHHHHhh-CCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 030661 15 KTQGKTYVVLVATGSFNPPTFMHLRMFELARDTL-NSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (173)
Q Consensus 15 ~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l-~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~ 93 (173)
.++.+.+++++.+||||||+++||.|.+.|.+.+ +-.+..||.++++|..|+|+|++++++-+|++|+++|+++..|++
T Consensus 2 ~~~~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~ 81 (234)
T KOG3199|consen 2 EDSEKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATETSKWLM 81 (234)
T ss_pred CCcccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhhcccccee
Confidence 4677889999999999999999999999999999 667799999999999999999999999999999999999999999
Q ss_pred EeeccccCCcccchHHHHHHHHHHcC-----------------------CcccCCcc--c--hH----HHhcCCccEEEE
Q 030661 94 VDPWEANQSGYQRTLTVLSRVKNFLI-----------------------EAGLISTG--K--KQ----NYIFPPCSASVE 142 (173)
Q Consensus 94 v~~~E~~~~~~syT~~TL~~lk~~~p-----------------------~D~l~~l~--~--W~----e~L~~~~~~vV~ 142 (173)
++.||..|+.+..|+++|+|+++... .|.+.+|. . |+ ..|+....++++
T Consensus 82 vD~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv 161 (234)
T KOG3199|consen 82 VDGWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCV 161 (234)
T ss_pred cchhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCcchhhHHHHHhhCcEEEE
Confidence 99999999999999999999987432 45433322 2 77 889999999999
Q ss_pred ecCCchHHHHHH
Q 030661 143 LSCMSVSLCLIY 154 (173)
Q Consensus 143 ~r~~~~~~~~~~ 154 (173)
.|..+=---.++
T Consensus 162 ~r~gsD~~~~i~ 173 (234)
T KOG3199|consen 162 TREGSDVENFLS 173 (234)
T ss_pred eccCCCHHHHHh
Confidence 998875444443
No 15
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.79 E-value=1.4e-18 Score=130.74 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=96.6
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
+++||+|||+|+||+.++++|.+.. .|+++|+++..+|.+.. .+...+.++|++|++.+.++. ..+..++.+...
T Consensus 2 ~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~--~~v~~~~~~~~~ 76 (143)
T cd02039 2 GIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDR--LKVVPVDFPEVK 76 (143)
T ss_pred eEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCC--cEEEEEecChhh
Confidence 4679999999999999999999987 58899998876664421 257899999999999999733 345666666656
Q ss_pred ccchHHHHHHHHHHcC-------CcccCCccchH----HHhcCCccEEEEecC---CchHHHHHH
Q 030661 104 YQRTLTVLSRVKNFLI-------EAGLISTGKKQ----NYIFPPCSASVELSC---MSVSLCLIY 154 (173)
Q Consensus 104 ~syT~~TL~~lk~~~p-------~D~l~~l~~W~----e~L~~~~~~vV~~r~---~~~~~~~~~ 154 (173)
.+++.+.+..+...++ +|....+++|+ +++...+.+++++|. ..+|++.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR 141 (143)
T cd02039 77 ILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRVRDGKKISSTLIR 141 (143)
T ss_pred ccCHHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEecCCCcEEehHHhh
Confidence 6788766655555554 78899999997 677777999999997 455555553
No 16
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.77 E-value=9.1e-19 Score=138.04 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=66.4
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccC
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~ 101 (173)
++|||||||+|+||+.++++|++.+ |+|+|+|+..++++. ++..++.++|++|+++++++.+++.|+.+|...
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~~---~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d 74 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRDD---ARTGLPLEKRLRWLREIFPDQENIVVHTLNEPD 74 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcccc---cCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 5689999999999999999999997 999999999888765 467899999999999999998999999999854
No 17
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.73 E-value=1.3e-17 Score=129.64 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=58.8
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
+++|||||||+|+||+.++++|.+.+ |+|+|+|+. +|. |+..++.++|++|+++++++.++++|..+
T Consensus 3 iai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~-np~-----K~~~~s~e~R~~~l~~~~~~~~~v~v~~~ 69 (140)
T PRK13964 3 IAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSI-NPD-----KSNASDLDSRFKNVKNKLKDFKNVEVLIN 69 (140)
T ss_pred EEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEecc-CCC-----CCCCCCHHHHHHHHHHHHcCCCCcEEecC
Confidence 45679999999999999999999997 899999875 454 34679999999999999999999988765
No 18
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.68 E-value=8.6e-17 Score=139.63 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCC-eEEeecc
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF-IMVDPWE 98 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~-i~v~~~E 98 (173)
+++|||||||+|+||+.+++.|++.+ |+|+|+|+..+|++. ++..++.++|++|+++++++.++ ++|++++
T Consensus 3 i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~~~~---~~~~~~~~~R~~~l~~~~~~~~~~v~v~~~~ 74 (325)
T TIGR01526 3 IGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFYDSK---AKRPPPVQDRLRWLREIFKYQKNQIFIHHLN 74 (325)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcCcc---CCCCCCHHHHHHHHHHHhccCCCeEEEEEcC
Confidence 45679999999999999999999996 999999998877743 36789999999999999999999 9999987
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.68 E-value=4.9e-16 Score=122.94 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=79.3
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC----CeEEeecc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD----FIMVDPWE 98 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~v-vp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~----~i~v~~~E 98 (173)
++|||||||+|+||+.++++|++++ |+|+| +|+..+|++. +..+++++|++|+++++++.+ ++.+...+
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~~~----~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~ 75 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESHTL----ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVP 75 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecC
Confidence 4689999999999999999999997 99988 4566666543 566899999999999998753 55564442
Q ss_pred ccCCcccchHHH-HHHHHHHcC-CcccCCccchHHHhcCCccEE--EEecCC--chHHHHHHHHH
Q 030661 99 ANQSGYQRTLTV-LSRVKNFLI-EAGLISTGKKQNYIFPPCSAS--VELSCM--SVSLCLIYLIF 157 (173)
Q Consensus 99 ~~~~~~syT~~T-L~~lk~~~p-~D~l~~l~~W~e~L~~~~~~v--V~~r~~--~~~~~~~~~~~ 157 (173)
+. +..+- .++++..-| .|....-+.|+..++....+. ..+++. ++|.+.+...+
T Consensus 76 ----d~-~~~~~w~~~v~~~vp~~div~~g~~~~~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~ 135 (163)
T cd02166 76 ----DI-ERNSLWVSYVESLTPPFDVVYSGNPLVARLFKEAGYEVRRPPMFNREEYSGTEIRRLM 135 (163)
T ss_pred ----CC-CchHHHHHHHHHHCCCCCEEEECchHHHHhhhhcCCeEecCCcccCCCCCHHHHHHHH
Confidence 11 21121 233333334 565444567884454444544 444422 34555555544
No 20
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.66 E-value=1.3e-15 Score=121.26 Aligned_cols=122 Identities=14% Similarity=0.054 Sum_probs=77.2
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~v-vp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
++|||||||+|+||+.+++.|++.+ |++++ ||+..++++. +..+++++|++|++.++++.+..++...-. +
T Consensus 2 gl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~~k~----~~p~~~~eR~~mi~~al~~~~~~~~~~vP~--~ 73 (165)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQESHTL----ENPFTAGERILMITQSLKEVGDLTYYIIPI--E 73 (165)
T ss_pred eEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCCCCC----CCCCCHHHHHHHHHHHHhcCCCceEEEEec--C
Confidence 4679999999999999999999996 99988 5777666654 566888999999999998765333322211 1
Q ss_pred cccchHHHH-HHHHHHc-CCcccCCccchHHHhcCCccE--EEEe---cCCchHHHHHHH
Q 030661 103 GYQRTLTVL-SRVKNFL-IEAGLISTGKKQNYIFPPCSA--SVEL---SCMSVSLCLIYL 155 (173)
Q Consensus 103 ~~syT~~TL-~~lk~~~-p~D~l~~l~~W~e~L~~~~~~--vV~~---r~~~~~~~~~~~ 155 (173)
.. ...+.. .+++..- |-|.+.+.....+++++...+ +..+ |. ..|.+.|-.
T Consensus 74 d~-~~~~~w~~~v~~~~p~~D~vf~~~~~~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~ 131 (165)
T TIGR01527 74 DI-ERNSIWVSYVESMTPPFDVVYSNNPLVRRLFKEAGYEVKRPPMFNRK-EYSGTEIRR 131 (165)
T ss_pred Cc-cHHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHcCCEEEECCCcCCC-cccHHHHHH
Confidence 11 111221 2233333 367665555444556655444 3333 66 444444433
No 21
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.64 E-value=5.2e-16 Score=122.03 Aligned_cols=69 Identities=29% Similarity=0.341 Sum_probs=60.4
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
+++|.|||||+|+||+.|+++|.+.+ |+|+|.. ..+|. |++.++.++|++|++.++++.++++|..|+.
T Consensus 4 iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV-~~np~-----K~plFsleER~~l~~~~~~~l~nV~V~~f~~ 72 (159)
T COG0669 4 IAVYPGSFDPITNGHLDIIKRASALF--DEVIVAV-AINPS-----KKPLFSLEERVELIREATKHLPNVEVVGFSG 72 (159)
T ss_pred eEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEE-EeCCC-----cCCCcCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 44679999999999999999999999 8986654 44664 5799999999999999999999999998864
No 22
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.63 E-value=1.7e-15 Score=121.94 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=56.9
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEEeeccc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMVDPWEA 99 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~----~~i~v~~~E~ 99 (173)
++|||||||+|+||+.++++|++.+ |+|+|+++..++.+. +++.+++++|++|+++++.+. .++.+...+-
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~~---~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D 76 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTARN---IKNPWTSEEREVMIEAALSDAGADLARVHFRPLRD 76 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCCC---CCCCcCHHHHHHHHHHHHhccCCCcceEEEEecCC
Confidence 5789999999999999999999998 699887665444333 457799999999999999764 2566666554
Q ss_pred c
Q 030661 100 N 100 (173)
Q Consensus 100 ~ 100 (173)
.
T Consensus 77 ~ 77 (181)
T cd02168 77 H 77 (181)
T ss_pred C
Confidence 3
No 23
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.62 E-value=3.2e-15 Score=119.76 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=68.8
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEe-cccCCCCcccccCCCCCHHHHHHHHHHHhcCCC----CeEEeecc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIG-GYMSPVNDAYKKRGLISAEHRINLCNLACKSSD----FIMVDPWE 98 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp-~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~----~i~v~~~E 98 (173)
++|||||||+|+||+.+++.|++.+ |+|+|++ +..+|++. ++.+++++|++|+++++.+.+ ++.+...+
T Consensus 3 gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~~~~----~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~ 76 (174)
T PRK01153 3 ALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQESHTL----KNPFTAGERILMIRKALEEEGIDLSRYYIIPIP 76 (174)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCC
Confidence 5679999999999999999999955 9998865 44555443 556899999999999997543 23333222
Q ss_pred ccCCcccchHHHHHHHHHHcC-CcccCCccchHHHhcCCccEEE
Q 030661 99 ANQSGYQRTLTVLSRVKNFLI-EAGLISTGKKQNYIFPPCSASV 141 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p-~D~l~~l~~W~e~L~~~~~~vV 141 (173)
-.. ... .=..+++..-| -|.....+.|+..++...++.|
T Consensus 77 D~~-~~~---~w~~~v~~~~~~~d~v~~~~~y~~~~f~~~g~~v 116 (174)
T PRK01153 77 DIE-FNS---IWVSHVESYTPPFDVVYTGNPLVARLFREAGYEV 116 (174)
T ss_pred Ccc-hHH---HHHHHHHHhCCCCCEEEECChHHHHhchhhCCeE
Confidence 111 011 11222333333 5655555666655665666643
No 24
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.58 E-value=1.2e-14 Score=126.95 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=59.0
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC--CCeEEeec
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVDPW 97 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~--~~i~v~~~ 97 (173)
+..+++|||+|||+|+||+.++++|++.+ |+|+|+|+..++... +++.+++++|++|++.++++. .++.+-..
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~---~~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARS---IKNPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCc---CCCCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 34455679999999999999999999998 999999975332222 356799999999999999854 35666555
Q ss_pred ccc
Q 030661 98 EAN 100 (173)
Q Consensus 98 E~~ 100 (173)
+-.
T Consensus 80 ~d~ 82 (340)
T PRK05379 80 RDS 82 (340)
T ss_pred CCC
Confidence 543
No 25
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.58 E-value=4.8e-15 Score=99.30 Aligned_cols=62 Identities=21% Similarity=0.451 Sum_probs=48.5
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec--ccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG--YMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~--~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~ 90 (173)
+++||+|||+|.||+.++++|.+..+ +.+++|++ ..+|.+. ....+.++|.+|++.++..++
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~----~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKG----EPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCC----CCCCCHHHHHHHHHHhccccC
Confidence 46799999999999999999999986 45666654 3334332 378999999999999887543
No 26
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.50 E-value=3.3e-13 Score=102.83 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=82.7
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
++++|+|||+|.||+.+++.|.+.. |.++++++..+ .-...++....+.++|++|++. ++..+.+.+. .
T Consensus 4 v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~-~~~~~~~~~~~~~~eR~~~l~~-~~~vd~v~~~-----~-- 72 (136)
T cd02170 4 VYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDE-TVAKIKRRPILPEEQRAEVVEA-LKYVDEVILG-----H-- 72 (136)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcH-HHHhcCCCCCCCHHHHHHHHHc-CCCcCEEEEC-----C--
Confidence 4569999999999999999999986 67777765432 1111123478999999999996 5444443332 1
Q ss_pred ccchHHHHHHHHHHcC------CcccCCccchH--HHhcCCccEEEEe--cCCchHHHHHHHHH
Q 030661 104 YQRTLTVLSRVKNFLI------EAGLISTGKKQ--NYIFPPCSASVEL--SCMSVSLCLIYLIF 157 (173)
Q Consensus 104 ~syT~~TL~~lk~~~p------~D~l~~l~~W~--e~L~~~~~~vV~~--r~~~~~~~~~~~~~ 157 (173)
+.+.++.+.+.+| .|.....+.|. +.|.+.+..+++. +...+|++++-..+
T Consensus 73 ---~~~~~~~l~~~~~~~vv~G~d~~fg~~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i 133 (136)
T cd02170 73 ---PWSYFKPLEELKPDVIVLGDDQKNGVDEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRI 133 (136)
T ss_pred ---CCCHhHHHHHHCCCEEEECCCCCCCCcchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHH
Confidence 3345555656555 45545567787 7888888888887 77777777776554
No 27
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.49 E-value=1e-13 Score=123.63 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=71.0
Q ss_pred hhhcccc--cCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc----ccCCCCCHHHHHHHH
Q 030661 9 KLSLESK--TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY----KKRGLISAEHRINLC 82 (173)
Q Consensus 9 ~~~~~~~--~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~----~K~~~~s~~~Rl~Ml 82 (173)
+|++.|. -|.+++.+++++|+|||+|+||+.++++|++.+ |+++++++..+|+.... .++..++.++|++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l 115 (399)
T PRK08099 38 ALHRFLGLEFPRQMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWL 115 (399)
T ss_pred HHHHHhCCChhhhcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHH
Confidence 4444553 466666566789999999999999999999997 89999998877654211 125678999999999
Q ss_pred HHHhcCCCCeEEeeccc
Q 030661 83 NLACKSSDFIMVDPWEA 99 (173)
Q Consensus 83 ~lai~~~~~i~v~~~E~ 99 (173)
+.++++.+++.|..++-
T Consensus 116 ~~~~~~~~~v~v~~~~~ 132 (399)
T PRK08099 116 LQTFKYQKNIKIHAFNE 132 (399)
T ss_pred HHHhCCCCCEEEEecCC
Confidence 99999999999997765
No 28
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.45 E-value=2.2e-13 Score=117.36 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=60.8
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
++++++ -|||||||+||+.++++|++.++++.|+++|+ ++..+++++|++|+++++++.|+++|..++-
T Consensus 114 ~~~~~~-~~~FDPiH~GHl~ii~~a~~~~d~~~V~i~~~----------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 114 KKIAAI-VMNANPFTLGHRYLVEKAAAENDWVHLFVVSE----------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CceEEE-EecCCCCchHHHHHHHHHHhhCCeEEEEEEcC----------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 577776 89999999999999999999999888988764 1456899999999999999999999988774
No 29
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.44 E-value=4.9e-13 Score=104.14 Aligned_cols=81 Identities=15% Similarity=-0.001 Sum_probs=56.3
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-C--CeEEeeccccC
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-D--FIMVDPWEANQ 101 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~-~--~i~v~~~E~~~ 101 (173)
++||||||+|.||+.++..|++..+ |+++++.+...+.+....+....+.++|++|++.++++. + .+.+...+ +.
T Consensus 3 ~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~-d~ 80 (143)
T cd02164 3 AVGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPID-DP 80 (143)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEcc-CC
Confidence 4699999999999999999999986 778775555443332101124679999999999999874 3 33444433 23
Q ss_pred Ccccch
Q 030661 102 SGYQRT 107 (173)
Q Consensus 102 ~~~syT 107 (173)
.|++.|
T Consensus 81 ~Gpt~~ 86 (143)
T cd02164 81 YGPTGT 86 (143)
T ss_pred CCCccc
Confidence 466654
No 30
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.40 E-value=1.3e-12 Score=102.72 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=47.2
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC---CCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS---PVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~---P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
++||||||+|.||+.+++.|++.. |+++|+++... ++| +....++++|++|++.++++
T Consensus 5 ~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K----~~~i~~~e~R~~~v~~~~~~ 65 (153)
T PRK00777 5 AVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYK----KHKVRPYEVRLKNLKKFLKA 65 (153)
T ss_pred EEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccC----CCCCCCHHHHHHHHHHHHHh
Confidence 469999999999999999999884 78888555432 333 25688999999999999876
No 31
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.39 E-value=9.3e-13 Score=115.06 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=56.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
.++++ +||||||+|+||+.++++|.+.++.+.|+|+ +. ++..+++++|++|++.++++.+++.|..+..
T Consensus 139 ~~i~~-~~g~fdP~t~GH~~li~~A~~~~d~~~v~v~-------~~---~~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~ 207 (332)
T TIGR00124 139 NKIGS-IVMNANPFTNGHRYLIEQAARQCDWLHLFVV-------KE---DASLFSYDERFALVKQGIQDLSNVTVHNGSA 207 (332)
T ss_pred CcEEE-EEeCcCCCchHHHHHHHHHHHHCCEEEEEEE-------eC---CCCCCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 35554 6999999999999999999999955545443 11 3678999999999999999999998887543
No 32
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.35 E-value=2.2e-12 Score=104.04 Aligned_cols=60 Identities=23% Similarity=0.198 Sum_probs=52.2
Q ss_pred CcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 28 GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
=+|||+|+||+.++++|++.++.+.|+|+|+ + +..+++++|++|+++|+++.++++|..+
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~d~~~V~v~p~-----~-----~~~~s~e~R~~Mi~~a~~~~~~v~v~~~ 65 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAECDWVHLFVVSE-----D-----ASLFSFDERFALVKKGTKDLDNVTVHSG 65 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCceEEEEEeC-----C-----CCCCCHHHHHHHHHHHhccCCCEEEEec
Confidence 3899999999999999999999888888875 1 3568999999999999999998877654
No 33
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.31 E-value=4.3e-12 Score=92.85 Aligned_cols=57 Identities=14% Similarity=-0.020 Sum_probs=49.0
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~la 85 (173)
++|||||||+|.||+.+++.|.+.+ |+++|.++..++.+. +....+.++|++|++.+
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~---~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV---WQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc---cCChHHHHHHHHHHHHH
Confidence 4679999999999999999999987 789998887766553 34688999999999987
No 34
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.29 E-value=1.7e-11 Score=109.09 Aligned_cols=99 Identities=20% Similarity=0.128 Sum_probs=83.6
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
+++.+....=++++++ =||||+|+||+.+++.|++.++.|+++|+|... |+| .+.++++.|++|++.+++++
T Consensus 174 ~r~~f~~~gw~~Vvaf--qt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g-~~k-----~~~~~~~~R~~~~~~~~~~~ 245 (383)
T TIGR00339 174 LREEFKERGWDTVVAF--QTRNPMHRAHEELTKRAARSLPNAGVLVHPLVG-LTK-----PGDIPAEVRMRAYEVLKEGY 245 (383)
T ss_pred HHHHHHHcCCCeEEEe--ccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCC-CCC-----CCCCCHHHHHHHHHHHHhhC
Confidence 3444443233567763 799999999999999999998889999999987 765 47799999999999999998
Q ss_pred CC-----eEEeeccccCCcccchHHHHHH--HHHHcC
Q 030661 90 DF-----IMVDPWEANQSGYQRTLTVLSR--VKNFLI 119 (173)
Q Consensus 90 ~~-----i~v~~~E~~~~~~syT~~TL~~--lk~~~p 119 (173)
+. +.+.++|....|++ +||.+ +++.|+
T Consensus 246 ~~~~~~~l~~~~~em~~agpr---eall~Aiir~nyG 279 (383)
T TIGR00339 246 PNPERVMLTFLPLAMRYAGPR---EAIWHAIIRKNYG 279 (383)
T ss_pred CCCCceEEEecchHhhcCCcH---HHHHHHHHHHHCC
Confidence 65 88999999999998 99999 999998
No 35
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.28 E-value=3.2e-11 Score=91.08 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=82.3
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
+++ +.+|+|||+|.||..++++|.+.. +++.++++.. +......+....+.++|++|++.. ..-+.+ + .
T Consensus 2 ~~v-~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d-~~~~~~~~~~~~~~~~R~~~l~~~-~~vd~v-~-----~ 70 (129)
T cd02171 2 KVV-ITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTD-EFNAGKGKKAVIPYEQRAEILESI-RYVDLV-I-----P 70 (129)
T ss_pred cEE-EEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEecc-HhHHhcCCCCCCCHHHHHHHHHcC-CccCEE-e-----c
Confidence 444 459999999999999999999986 5666665432 222111235688999999999764 211222 1 1
Q ss_pred CCcccchHHHHHHHHHHcCCcccCCccchH---HHhcCCccEEEEecCCchHHHHHHHHHHh
Q 030661 101 QSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---NYIFPPCSASVELSCMSVSLCLIYLIFHK 159 (173)
Q Consensus 101 ~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---e~L~~~~~~vV~~r~~~~~~~~~~~~~~~ 159 (173)
...+...++.+ +.++.|.+.-...|. +.|-+.+.++++++...+|+++|-..+.|
T Consensus 71 ~~~~~~f~~~~----~~l~~~~vv~G~d~~g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 71 ETNWEQKIEDI----KKYNVDVFVMGDDWEGKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred CCCccChHHHH----HHhCCCEEEECCCCcchHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 12233344444 345555555556664 77777889999999888888888877765
No 36
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.17 E-value=2.8e-10 Score=89.22 Aligned_cols=124 Identities=13% Similarity=-0.011 Sum_probs=78.3
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCcc
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGY 104 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~~ 104 (173)
+.+|+|||+|.||+.++++|.+...-|+++|..+ ....-..++.+++.+.++|.+|++.. +--+.+.+. ...
T Consensus 6 ~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~-sD~~~~~~k~~pi~~~~eR~~~l~~~-~~Vd~Vi~~------~~~ 77 (150)
T cd02174 6 YVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVH-SDEEIHKHKGPPVMTEEERYEAVRHC-KWVDEVVEG------APY 77 (150)
T ss_pred EEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHhhcCCCCcCCHHHHHHHHHhc-CCCCeEEEC------CCC
Confidence 4599999999999999999998863355544332 21111112224889999999999954 444444332 123
Q ss_pred cchHHHHHHHHHHcCCcccCCccch------H---HHhcCCccEEEEecCCchHHHHHHHHHHhh
Q 030661 105 QRTLTVLSRVKNFLIEAGLISTGKK------Q---NYIFPPCSASVELSCMSVSLCLIYLIFHKY 160 (173)
Q Consensus 105 syT~~TL~~lk~~~p~D~l~~l~~W------~---e~L~~~~~~vV~~r~~~~~~~~~~~~~~~~ 160 (173)
..+.+.++.++ .|-+..-+.| . +.+.+...+..++|..+.|++.+..-..+-
T Consensus 78 ~~~~~~i~~~~----~d~vv~G~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~ 138 (150)
T cd02174 78 VTTPEFLDKYK----CDYVAHGDDIYLDADGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLD 138 (150)
T ss_pred CChHHHHHHhC----CCEEEECCCCCCCCCchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 45666665443 4444333334 2 456667888999999988877766544433
No 37
>PRK13671 hypothetical protein; Provisional
Probab=99.14 E-value=9.3e-11 Score=101.25 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=49.6
Q ss_pred CcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 030661 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (173)
Q Consensus 28 GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~la 85 (173)
-+|||+|+||+.+++.|++.+++|.|++||++.+|++. +....+..+|++|++..
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg---~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRG---EIAVASFEKRKKIALKY 61 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCC---CCCCCCHHHHHHHHHHc
Confidence 69999999999999999999999999999999988875 24566999999999876
No 38
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.14 E-value=1.9e-10 Score=93.95 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=51.9
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~ 90 (173)
.-.++|.|.|+|+|+||+.++++|++.+ |+|+++.|....... .++.+++.+|..|++.++.+.+
T Consensus 4 yd~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t---~~NPFTa~ER~~MI~~aL~e~~ 68 (196)
T PRK13793 4 FDYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERN---IKNPFLAIEREQMILSNFSLDE 68 (196)
T ss_pred eeEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCC---CCCCCCHHHHHHHHHHhcchhh
Confidence 3456789999999999999999999998 787766665433333 3677999999999999996543
No 39
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.09 E-value=1.4e-09 Score=85.49 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=70.3
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc---CCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM---SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~---~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
+++++|+|||+|.||+.++++|.+.. |.++|..+.. .+.|. ...+..+.++|++|+ ++++..+.+.+...+
T Consensus 4 iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~--~~~pi~~~~eR~~~v-~~~~~Vd~V~v~~~~- 77 (152)
T cd02173 4 VVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKG--SNYPIMNLHERVLSV-LACRYVDEVVIGAPY- 77 (152)
T ss_pred EEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcC--CCCCCCCHHHHHHHH-HhcCCCCEEEECCCC-
Confidence 44569999999999999999999875 6765543311 12221 014789999999999 678876666553321
Q ss_pred cCCcccchHHHHHHHHHHc---CCcccCC---ccchH-HHhcCCccEEEEecCCchHHHHHHH
Q 030661 100 NQSGYQRTLTVLSRVKNFL---IEAGLIS---TGKKQ-NYIFPPCSASVELSCMSVSLCLIYL 155 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~---p~D~l~~---l~~W~-e~L~~~~~~vV~~r~~~~~~~~~~~ 155 (173)
..+.+.++.++-.+ +.|...+ -+.+. ..+-+.--+..+.|+...|++.|-.
T Consensus 78 -----~~~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~ 135 (152)
T cd02173 78 -----VITKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVN 135 (152)
T ss_pred -----cchHHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 23344444332111 0222211 11111 2233334455666777777665543
No 40
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.05 E-value=1.9e-09 Score=96.85 Aligned_cols=143 Identities=15% Similarity=-0.011 Sum_probs=88.4
Q ss_pred CCCCChhhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHH
Q 030661 2 DVPLPLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINL 81 (173)
Q Consensus 2 ~~~~p~~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~M 81 (173)
.+.||...+.+.-.. + .++.++++|+|||+|.||+.++++|.+.. |+++|.... ...-...+..+..+.++|++|
T Consensus 36 ~~~~~~~~~~~~~~~-~-~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~S-De~i~~~Kg~PV~~~eER~~~ 110 (418)
T PLN02406 36 PYAWPDLGIFKKKKK-K-KPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVS-DEEIIANKGPPVTPMHERMIM 110 (418)
T ss_pred cccchhhhhhccccC-C-CceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEec-ChhhhccCCCCcCCHHHHHHH
Confidence 466777666644332 2 22334569999999999999999999986 666443222 211111122478999999999
Q ss_pred HHHHhcCCCCeEEeeccccCCcccchHHHHHHHHHHcCCcccCCccchH---------HHhcCCccEEEEecCCchHHHH
Q 030661 82 CNLACKSSDFIMVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---------NYIFPPCSASVELSCMSVSLCL 152 (173)
Q Consensus 82 l~lai~~~~~i~v~~~E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---------e~L~~~~~~vV~~r~~~~~~~~ 152 (173)
++. ++--+.+.+. .....+.++++.+-+++.-|-+..-+.|. ...-..-.+..+.|..+.|++.
T Consensus 111 v~a-lk~VD~Vv~~------apy~~~~d~~~~li~~~~~D~vVhGdD~~~~~~g~d~y~~~k~~Gr~~~i~rt~GvSTTd 183 (418)
T PLN02406 111 VSG-VKWVDEVIPD------APYAITEEFMNKLFNEYNIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTD 183 (418)
T ss_pred HHh-cCCCceEEeC------CccccchHHHHHHHHHhCCCEEEECCCccccCCchHHHHHHHhCCEEEEEecCCCCCHHH
Confidence 997 5554444331 12234566676655666544444443343 2233345677899999988887
Q ss_pred HHHH
Q 030661 153 IYLI 156 (173)
Q Consensus 153 ~~~~ 156 (173)
+..-
T Consensus 184 Iv~R 187 (418)
T PLN02406 184 IVGR 187 (418)
T ss_pred HHHH
Confidence 6543
No 41
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.94 E-value=4.6e-09 Score=92.68 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=76.1
Q ss_pred cCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec---ccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCe
Q 030661 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG---YMSPVNDAYKKRGLISAEHRINLCNLACKSSDFI 92 (173)
Q Consensus 16 ~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~---~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i 92 (173)
.|++...++++.|+|||+|.||+.++++|.+.. |.++|... ..+..|. ...++.+.++|++|+. +++..+.+
T Consensus 187 ~~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg--~~~Pi~~~~eR~~~v~-a~~~Vd~V 261 (353)
T PTZ00308 187 SPKPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKG--SNYPIMNLNERVLGVL-SCRYVDEV 261 (353)
T ss_pred CCCCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcC--CCCCCCCHHHHHHHHH-hhCCCCeE
Confidence 344544566679999999999999999999976 67655332 1222221 0137899999999994 88776666
Q ss_pred EEeeccccCCcccchHHHHHHHHHHc---CCccc-CCccchH---HHhcCCccEEEEecCCchHHHHHHH
Q 030661 93 MVDPWEANQSGYQRTLTVLSRVKNFL---IEAGL-ISTGKKQ---NYIFPPCSASVELSCMSVSLCLIYL 155 (173)
Q Consensus 93 ~v~~~E~~~~~~syT~~TL~~lk~~~---p~D~l-~~l~~W~---e~L~~~~~~vV~~r~~~~~~~~~~~ 155 (173)
.+... ...+.+.++.++-.+ +.|.. .+.+.+. ...-..--+..++|....||+.+-.
T Consensus 262 vi~~~------~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~ 325 (353)
T PTZ00308 262 VIGAP------FDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVD 325 (353)
T ss_pred EEcCC------CCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHH
Confidence 55422 234445554433221 12221 1122111 1222334467788888877776543
No 42
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.87 E-value=4.1e-09 Score=84.57 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=50.6
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
..++|-|.|.|+|.||+.++++|++.. |+++|+.|+-..... .++..++.+|+.|++.++.+
T Consensus 4 ~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t---~~nPfTagER~~mi~~~L~~ 65 (172)
T COG1056 4 KRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHT---LKNPFTAGERIPMIRDRLRE 65 (172)
T ss_pred eEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCccccc---ccCCCCccchhHHHHHHHHh
Confidence 344568999999999999999999996 998888776443322 46778999999999999975
No 43
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.84 E-value=2.3e-08 Score=79.88 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=47.0
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhC---CCcEEEEecccC-----CCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEee
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLN---SEGYCVIGGYMS-----PVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~---ld~v~vvp~~~~-----P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~ 96 (173)
+.-|+|||+|.||+.++++|.+..+ ++.+.+.+...+ |.+. ...+.+.++|++|++..= .+.+.+.+
T Consensus 3 v~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~---~~~l~~~e~R~~~l~~l~--vd~v~~~~ 77 (180)
T cd02064 3 VAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKA---PPRLTTLEEKLELLESLG--VDYLLVLP 77 (180)
T ss_pred EEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCC---CCcCCCHHHHHHHHHHcC--CCEEEEeC
Confidence 3479999999999999999999853 344544332211 1111 245789999999999752 55666655
Q ss_pred cc
Q 030661 97 WE 98 (173)
Q Consensus 97 ~E 98 (173)
++
T Consensus 78 f~ 79 (180)
T cd02064 78 FD 79 (180)
T ss_pred CC
Confidence 54
No 44
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=98.51 E-value=8.2e-07 Score=66.88 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred ecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCccc
Q 030661 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQ 105 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~~s 105 (173)
..|+||++|.||..++++|.+.. +++.++-+. .|....+.+..+.+.++|.++++.. ..-+.+ +. ...+.
T Consensus 3 ~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~-d~~~~~~~~~~i~~~eeR~~~l~~~-~~Vd~v-i~-----~~~~~ 72 (125)
T TIGR01518 3 TYGTFDLLHWGHINLLERAKQLG--DYLIVALST-DEFNLQKQKKAYHSYEHRKLILETI-RYVDLV-IP-----EKSWE 72 (125)
T ss_pred EcceeCCCCHHHHHHHHHHHHcC--CEEEEEEec-hHHHhhcCCCCCCCHHHHHHHHHcC-CCccEE-ec-----CCCcc
Confidence 47999999999999999999875 555443222 2332222235678999999998753 211222 11 11112
Q ss_pred chHHHHHHHHHHcCCcccCCccchH---HHhcCC--ccEEEEecCCchHHHHHH
Q 030661 106 RTLTVLSRVKNFLIEAGLISTGKKQ---NYIFPP--CSASVELSCMSVSLCLIY 154 (173)
Q Consensus 106 yT~~TL~~lk~~~p~D~l~~l~~W~---e~L~~~--~~~vV~~r~~~~~~~~~~ 154 (173)
-..+. + +.++.|.+..-+.|. +.+-+. ..++++++...+|+++|-
T Consensus 73 ~f~~~---l-~~~~~~~vv~G~D~~g~~~~l~~~~~~~v~~v~~~~~vSST~Ir 122 (125)
T TIGR01518 73 QKKQD---I-IDFNIDVFVMGDDWEGKFDFLKDECPLKVVYLPRTEGVSTTKIK 122 (125)
T ss_pred chHHH---H-HHcCCCEEEECCCccchHHHHhhccCcEEEEeCCCCCccHHHHH
Confidence 22233 3 356555554444443 333222 456778888777777764
No 45
>PLN02388 phosphopantetheine adenylyltransferase
Probab=98.45 E-value=1e-06 Score=71.05 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=46.3
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-cCCCCCHHHHHHHHHHHhcCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
..+.+++ ||+||.+|.||..++..|.+... +.+. |.--..|.-.+.. +..+.+.++|.++++..+...
T Consensus 18 ~~~~Vv~-gGtFDgLH~GHq~LL~~A~~~a~-~~vv-Igft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~ 86 (177)
T PLN02388 18 SYGAVVL-GGTFDRLHDGHRLFLKAAAELAR-DRIV-IGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSI 86 (177)
T ss_pred cCCeEEE-EecCCccCHHHHHHHHHHHHhhh-cCEE-EecCCChhhcccCCCcccCCHHHHHHHHHHHHHHc
Confidence 3455655 99999999999999999998763 3442 2221223221111 234779999999999999763
No 46
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=98.44 E-value=3.1e-06 Score=65.62 Aligned_cols=60 Identities=22% Similarity=0.140 Sum_probs=40.4
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHH
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~l 84 (173)
+++ +.-|+||++|.||..+++.|.+.. +.+.+.-......+. .....+.+.++|.++++.
T Consensus 5 ~~v-v~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~-~~~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 5 TVV-LCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNK-GPGRPIFPEDLRAEVLAA 64 (144)
T ss_pred EEE-EEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhcc-CCCCCCCCHHHHHHHHHc
Confidence 444 458999999999999999999986 444332221111111 112468899999999964
No 47
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=98.33 E-value=1.5e-06 Score=67.69 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=70.4
Q ss_pred ecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCccc
Q 030661 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSGYQ 105 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~~s 105 (173)
.+|+||=+|.||+..+++|.+.. |+++|+.+...-.....++++..+.++|++|++.. .=-+.+.. .....
T Consensus 6 ~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~-ryVD~vi~------~~p~~ 76 (140)
T COG0615 6 ADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESL-RYVDEVIL------GAPWD 76 (140)
T ss_pred EeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcC-cchheeee------CCccc
Confidence 49999999999999999999986 78777655332222112456799999999999843 21111110 11122
Q ss_pred chHHHHHHHHHHcCCcccCCccchH-------HHhcCCccEEEEecCCchHH
Q 030661 106 RTLTVLSRVKNFLIEAGLISTGKKQ-------NYIFPPCSASVELSCMSVSL 150 (173)
Q Consensus 106 yT~~TL~~lk~~~p~D~l~~l~~W~-------e~L~~~~~~vV~~r~~~~~~ 150 (173)
.+.+.+.. +.-|-+..-+.|+ +++.+.--++.+.|+...++
T Consensus 77 ~~~~~i~~----~k~Div~lG~D~~~d~~~l~~~~~k~G~~~~v~R~~g~~~ 124 (140)
T COG0615 77 IKFEDIEE----YKPDIVVLGDDQKFDEDDLKYELVKRGLFVEVKRTEGVST 124 (140)
T ss_pred cChHHHHH----hCCCEEEECCCCcCChHHHHHHHHHcCCeeEEEeccCccc
Confidence 33444443 4355565666665 44544447888899887444
No 48
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.33 E-value=9.1e-07 Score=69.69 Aligned_cols=67 Identities=19% Similarity=0.052 Sum_probs=47.9
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
.+..++++ |||||++|.||-.+++.|.+.- ++|.+.-+.-.-.+. +.+....+++.|++=++..+..
T Consensus 3 ~kfm~vav-GGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~-~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 3 IKFMKVAV-GGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKK-KKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred ccceEEEe-cccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHH-hccccCCcHHHHHHHHHHHHHH
Confidence 34566776 9999999999999999999976 466443332211122 1345689999999999887754
No 49
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.30 E-value=3.4e-06 Score=65.35 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=72.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~--K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
+++++ ..|.||-+|.||+.++++|.+.. +.+.++-+ ..|+-..+. ...+.+.++|.++++.. ..-+.+.+ +
T Consensus 11 ~~~v~-~~G~FDgvH~GH~~ll~~a~~~~--~~~~v~v~-~d~~~~~~k~~~~~l~~~eeR~~~l~~~-~~VD~vi~--f 83 (144)
T TIGR02199 11 KKIVF-TNGCFDILHAGHVSYLQQARALG--DRLVVGVN-SDASVKRLKGETRPINPEEDRAEVLAAL-SSVDYVVI--F 83 (144)
T ss_pred CCEEE-EeCcccccCHHHHHHHHHHHHhC--CccEEEEE-CCcCHHHhCCCCCCcCCHHHHHHHHHhc-CCCCEEEE--C
Confidence 34554 48999999999999999999986 44433332 233311111 13588999999999864 22233333 2
Q ss_pred cccCCcccchHHHHHHHHHHcCCcccCCccchH----H--HhcCC--ccEEEEecCCchHHHHHHHHH
Q 030661 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ----N--YIFPP--CSASVELSCMSVSLCLIYLIF 157 (173)
Q Consensus 98 E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~----e--~L~~~--~~~vV~~r~~~~~~~~~~~~~ 157 (173)
.. .+ -+.|-+.++.|.+...+.|. + ++++. ..++++++...+|++.+-...
T Consensus 84 ----~~--~~---~~~fi~~l~~~~vv~G~d~~~~~~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri 142 (144)
T TIGR02199 84 ----DE--DT---PEELIGELKPDILVKGGDYKVETLVGAELVESYGGQVVLLPFVEGRSTTAIIEKI 142 (144)
T ss_pred ----CC--CC---HHHHHHHhCCCEEEECCCCCCCcchhHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 11 11 12233456655554444444 2 33332 468888888888887776554
No 50
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=98.25 E-value=2.2e-06 Score=74.91 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=45.9
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC-CCCeEEe
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS-SDFIMVD 95 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~-~~~i~v~ 95 (173)
++++ |||||++|.||+.+++.|.+.. |++++..+.- ..-...++.. .|+++|+++++..++. .+.+.+.
T Consensus 2 ~V~v-gGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D-~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~ 71 (322)
T PRK01170 2 ITVV-GGTFSKLHKGHKALLKKAIETG--DEVVIGLTSD-EYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIR 71 (322)
T ss_pred EEEE-ccccccCChHHHHHHHHHHHcC--CEEEEEEccH-HHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3554 9999999999999999998754 6665543321 1111111224 8999999999998754 2334443
No 51
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=98.16 E-value=8e-06 Score=72.25 Aligned_cols=122 Identities=15% Similarity=0.060 Sum_probs=71.2
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccC
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~ 101 (173)
+.++..|.||-+|.||..++++|.+.. +.+.|.+..-.-... .+...+.+.++|+++++.. +--+.+.+ .++.
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~-~K~~pi~~~eeR~~~l~~~-~~VD~Vv~-~~p~-- 84 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMR-NKGPPVMHQEERYEALRAC-KWVDEVVE-GYPY-- 84 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhh-cCCCCCCCHHHHHHHHHhc-CCccEEEE-CCCC--
Confidence 333459999999999999999999986 566554322100000 1123589999999999843 21222222 1111
Q ss_pred CcccchHHHHHHHHHHcCCcccCCccch------H---HHhcCCccEEEEecCCchHHHHHH-HHH
Q 030661 102 SGYQRTLTVLSRVKNFLIEAGLISTGKK------Q---NYIFPPCSASVELSCMSVSLCLIY-LIF 157 (173)
Q Consensus 102 ~~~syT~~TL~~lk~~~p~D~l~~l~~W------~---e~L~~~~~~vV~~r~~~~~~~~~~-~~~ 157 (173)
.-+.+.| +++..|-+...+.| . +.+.+.--+..+.|..++||+.+. +++
T Consensus 85 ---~~~~~fI----~~l~~d~vv~GdD~~~g~~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril 143 (353)
T PTZ00308 85 ---TTRLEDL----ERLECDFVVHGDDISVDLNGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRML 143 (353)
T ss_pred ---CchHHHH----HHhCCCEEEECCCCCCCCCccchHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 1122333 44443322222222 1 666677889999999988877654 444
No 52
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.95 E-value=2.5e-05 Score=63.09 Aligned_cols=57 Identities=23% Similarity=0.181 Sum_probs=47.2
Q ss_pred cCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 030661 29 SFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (173)
Q Consensus 29 SFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~ 95 (173)
--||+|+||..++++|.+.. |.+++.... .+ +..+++++|.+|++.-+++.+++.|-
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~--d~l~vFVV~----eD----~S~Fpf~~R~~LVk~G~~~L~NV~V~ 63 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKEC--DWLHVFVVS----ED----RSLFPFADRYELVKEGTADLPNVTVH 63 (182)
T ss_pred cCCCCccHHHHHHHHHHHhC--CEEEEEEEc----cc----cCcCCHHHHHHHHHHHhCcCCCEEEE
Confidence 46999999999999999998 777654322 12 67899999999999999999888775
No 53
>PLN02413 choline-phosphate cytidylyltransferase
Probab=97.93 E-value=0.00014 Score=62.84 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEee
Q 030661 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (173)
Q Consensus 17 ~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~ 96 (173)
|...+++++.-|+||=+|.||+..+++|.+.++-+.+ +|+......-..++.+++.+.++|.++++ +|+--+.+.+.
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~L-IVGV~sDe~v~~~KGrPIm~~~ER~e~V~-acKyVDeVV~~- 99 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYL-LVGCCNDELTHKYKGKTVMTEDERYESLR-HCKWVDEVIPD- 99 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEE-EEEecccHHHHhcCCCCCCCHHHHHHHHH-hcccccEEeeC-
Confidence 3444555566999999999999999999998743444 33322221111222357899999999998 44433333221
Q ss_pred ccccCCcccchHHHHHHHHHHcC-CcccCCc-----cchH-HHhcCCccEEEEecCCchHHHH-HHHHHHhh
Q 030661 97 WEANQSGYQRTLTVLSRVKNFLI-EAGLIST-----GKKQ-NYIFPPCSASVELSCMSVSLCL-IYLIFHKY 160 (173)
Q Consensus 97 ~E~~~~~~syT~~TL~~lk~~~p-~D~l~~l-----~~W~-e~L~~~~~~vV~~r~~~~~~~~-~~~~~~~~ 160 (173)
..+.-|.+.|+.++=-+- .+..... .... +.+-+..-+..+.|...+||+. +-+|+..|
T Consensus 100 -----aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y 166 (294)
T PLN02413 100 -----APWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDY 166 (294)
T ss_pred -----CCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 112224455554331110 1111111 1111 3444556788889998666554 45566554
No 54
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.57 E-value=0.00036 Score=62.87 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=70.0
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~--K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
.+++. ..|.||.+|.||+.+++.|.+.. +.+.+..+. .+.-..++ ..++.+.++|.+++ .+++.-+++. .+
T Consensus 340 ~~iv~-~~G~fD~~H~GH~~~l~~a~~~~--~~l~v~v~~-d~~~~~~k~~~~pi~~~~~R~~~~-~~~~~vd~v~--~~ 412 (473)
T PRK11316 340 EKIVM-TNGCFDILHAGHVSYLANARKLG--DRLIVAVNS-DASVKRLKGEGRPVNPLEQRMAVL-AALEAVDWVV--PF 412 (473)
T ss_pred CeEEE-EecccccCCHHHHHHHHHHHHhC--CeeEEEEeC-chhHHHhCCCCCCCCCHHHHHHHH-HhcCcCCEEE--eC
Confidence 35554 59999999999999999999986 556554443 22211111 13589999999998 4555555542 22
Q ss_pred cccCCcccchHHHHHHHHHHcCCcccCCccchH-------HHhc-CCccEEEEecCCchHHHHHHH
Q 030661 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ-------NYIF-PPCSASVELSCMSVSLCLIYL 155 (173)
Q Consensus 98 E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~-------e~L~-~~~~~vV~~r~~~~~~~~~~~ 155 (173)
. .. -..+ +-+.+.-|-+..-+.|. ..+. ..+.+.+++|....|++.+-.
T Consensus 413 ~----~~-~~~~----~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~i~~ 469 (473)
T PRK11316 413 E----ED-TPQR----LIAEILPDLLVKGGDYKPEEIAGSKEVWANGGEVKVLNFEDGCSTTNIIK 469 (473)
T ss_pred C----CC-CHHH----HHHHhCCCEEEECCCCCCCccccHHHHHHcCCEEEEEcCCCCcCHHHHHH
Confidence 1 11 1122 22333334333333342 2222 237788899988877776543
No 55
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=97.21 E-value=0.00039 Score=59.08 Aligned_cols=68 Identities=22% Similarity=0.153 Sum_probs=46.5
Q ss_pred cCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccC----CCCCHHHHHHHHHHHhcCC
Q 030661 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKR----GLISAEHRINLCNLACKSS 89 (173)
Q Consensus 16 ~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~----~~~s~~~Rl~Ml~lai~~~ 89 (173)
+.++..++++ |||||=.|+||-.+...|.... .|++.+-.+ .++--.|| -+-+.++|++=+...+++.
T Consensus 138 ~a~~~~~~al-GGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~----d~elL~kK~~~Eliepie~R~~~V~~Fl~~I 209 (293)
T KOG3351|consen 138 PANKFMVVAL-GGTFDRLHDGHKVLLSVAAELA-SDRLVVGVT----DDELLKKKVLKELIEPIEERKEHVSNFLKSI 209 (293)
T ss_pred chhcceeEEe-ccchhhhccchHHHHHHHHHHh-hceEEEEec----ChHHHHHhHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3444567776 9999999999998888887754 466644222 11111122 2577899999999988763
No 56
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=97.05 E-value=0.0035 Score=54.44 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=44.1
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccc-----ccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAY-----KKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~ld~v-~vvp~~~~P~k~~~-----~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
+.=|.||-+|.||..+++.|.+..+...+ .++-+. .|+-... ....+.+.++|+++++.. . -+.+.+-+|
T Consensus 17 v~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitF-d~~p~~~~~~~~~~~~l~t~eeR~~~l~~~-g-VD~~~~~~F 92 (305)
T PRK05627 17 LTIGNFDGVHRGHQALLARAREIARERGLPSVVMTF-EPHPREVFAPDKAPARLTPLRDKAELLAEL-G-VDYVLVLPF 92 (305)
T ss_pred EEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEe-cCCHHHHcCCCCCCcCCCCHHHHHHHHHHc-C-CCEEEEecC
Confidence 34699999999999999999987642221 112222 3321100 124578899999999755 2 555555444
No 57
>PRK07143 hypothetical protein; Provisional
Probab=97.03 E-value=0.0087 Score=51.49 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=43.8
Q ss_pred ecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-cCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
.=|.||-+|.||..+++.|.+. + +.. +|.+..+|..-... ...+.+.++|+++++.. +.+.+.+.+|.
T Consensus 20 aiG~FDGvH~GHq~Ll~~a~~~-~-~~~-vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~--Gvd~~~~~~F~ 88 (279)
T PRK07143 20 VLGGFESFHLGHLELFKKAKES-N-DEI-VIVIFKNPENLPKNTNKKFSDLNSRLQTLANL--GFKNIILLDFN 88 (279)
T ss_pred EEccCCcCCHHHHHHHHHHHHC-C-CcE-EEEEeCChHHhcccCcccCCCHHHHHHHHHHC--CCCEEEEeCCC
Confidence 3599999999999999999974 3 333 33333344431101 12478899999998753 34556666664
No 58
>PRK13670 hypothetical protein; Provisional
Probab=96.98 E-value=0.0018 Score=58.03 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=41.8
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCc-EEEEeccc-CCCCcccccCCCCCHHHHHHHHHHH
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYM-SPVNDAYKKRGLISAEHRINLCNLA 85 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~-v~vvp~~~-~P~k~~~~K~~~~s~~~Rl~Ml~la 85 (173)
++++| =--|||+|+||..++++|.+..+.+- +.|+|+.. .+ . ...+.+..+|.+|+...
T Consensus 2 k~~GI-IaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qr-g----~p~i~~~~~R~~~a~~~ 62 (388)
T PRK13670 2 KVTGI-IVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQR-G----EPAIVDKWTRAKMALEN 62 (388)
T ss_pred ceeEE-EeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCC-C----CCCCCCHHHHHHHHHHc
Confidence 34443 36899999999999999999886554 45666542 22 1 12388999999998654
No 59
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=96.96 E-value=0.0014 Score=59.32 Aligned_cols=124 Identities=12% Similarity=0.108 Sum_probs=70.0
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc--cCCCCCHHHHHHHHHHHhcCCCCeEEee
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK--KRGLISAEHRINLCNLACKSSDFIMVDP 96 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~--K~~~~s~~~Rl~Ml~lai~~~~~i~v~~ 96 (173)
....+++.+|+||-+|.||+..+++|.+.. |.+ +|+......-..++ ..++.+.++|..++.. |+--+.+-+.
T Consensus 249 ~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~L-IVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~a-ck~VD~VVi~- 323 (418)
T PLN02406 249 PDARIVYIDGAFDLFHAGHVEILRLARALG--DFL-LVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA-CRYVDEVIIG- 323 (418)
T ss_pred CCCeEEEECCeeccCCHHHHHHHHHHHHhC--CEE-EEEEeccHHHHHhcCCCCCCCCHHHHHHHHhc-cCcccEEEeC-
Confidence 333444559999999999999999999864 544 33322111111111 2578999999999884 5443433331
Q ss_pred ccccCCcccchHHHHHHHHHHcCCcccCCccchH------------HHhcCCccEEEEecCCchHHHHHHHH
Q 030661 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ------------NYIFPPCSASVELSCMSVSLCLIYLI 156 (173)
Q Consensus 97 ~E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~------------e~L~~~~~~vV~~r~~~~~~~~~~~~ 156 (173)
.....|.+.|++++ -|-+..-+.|. ...-+.--+.+++|...+||+.|-.-
T Consensus 324 -----ap~~~~~~~i~~~~----~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~R 386 (418)
T PLN02406 324 -----APWEVSKDMITTFN----ISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRR 386 (418)
T ss_pred -----CCCCCCHHHHHHhC----CCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHH
Confidence 12344555555543 22222222221 12222334677888888887766543
No 60
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.83 E-value=0.0019 Score=57.93 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=31.1
Q ss_pred CcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHH
Q 030661 28 GSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (173)
Q Consensus 28 GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~l 84 (173)
--|||+|+||+..++++++..+.|.+++|-++. +-+. +...+++--.|.+|.-.
T Consensus 8 aEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGn--FvQR-GEPAi~dKw~RA~~AL~ 61 (388)
T PF05636_consen 8 AEYNPFHNGHLYQIEQAKKITGADVIIAVMSGN--FVQR-GEPAIIDKWTRAEMALK 61 (388)
T ss_dssp ---TT--HHHHHHHHHHH---TSSEEEEEE--T--TSBT-SSB-SS-HHHHHHHHHH
T ss_pred EeECCccHHHHHHHHHHhccCCCCEEEEEECCC--cccC-CCeeeCCHHHHHHHHHH
Confidence 689999999999999999999999876665542 2221 22347888899998543
No 61
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=96.73 E-value=0.0024 Score=50.35 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=39.2
Q ss_pred cCcCChhhHHHHHHHHHHHHhhCCCc-EEEEeccc-CCC---CcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 27 TGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYM-SPV---NDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 27 GGSFdP~H~GHl~ia~~a~~~l~ld~-v~vvp~~~-~P~---k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
=|.||=+|.||..+++.|.+...... ..+|-+.. +|- ++......+.+.++|+++++.. +.+.+.+-+|+.
T Consensus 11 iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~--Gvd~~~~~~F~~ 86 (157)
T PF06574_consen 11 IGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL--GVDYVIVIPFTE 86 (157)
T ss_dssp ES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT--TESEEEEE-CCC
T ss_pred EeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc--CCCEEEEecchH
Confidence 59999999999999999998874333 22222332 121 1000113489999999999975 234455555543
No 62
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.64 E-value=0.0071 Score=52.77 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=51.2
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD 95 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~ 95 (173)
.++|+++ -=--||+++||-.++++|..++ |-+++-.. +. ....+|+++|++|++.-+.+.+++.+-
T Consensus 144 gkkIgaI-VMNANPFTLGH~YLVEqAaaqc--DwlHLFvV-----~e---D~S~f~y~~R~~Lv~~G~~~l~Nvt~H 209 (352)
T COG3053 144 GKKIGAI-VMNANPFTLGHRYLVEQAAAQC--DWLHLFVV-----KE---DSSLFPYEDRLDLVKKGTADLPNVTVH 209 (352)
T ss_pred CCeeEEE-EEeCCCccchhHHHHHHHHhhC--CEEEEEEE-----ec---ccccCCHHHHHHHHHHhhccCCceEEe
Confidence 3567665 5578999999999999999998 66654211 11 257899999999999999998887653
No 63
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=96.32 E-value=0.005 Score=53.14 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=43.3
Q ss_pred ecCcCChhhHHHHHHHHHHHHhh---CCCcEEEEecccCCCC-----cccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 26 ATGSFNPPTFMHLRMFELARDTL---NSEGYCVIGGYMSPVN-----DAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l---~ld~v~vvp~~~~P~k-----~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
.-|.||.+|.||..+++.|.+.. ++..+.+ +. .|+- ...... +.+.++|+++++.. +.+.+.+-+|
T Consensus 3 aiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~--tF-~phP~~~~~~~~~~~-l~~~~~k~~~l~~~--Gvd~~~~~~F 76 (288)
T TIGR00083 3 AIGYFDGLHLGHQALLQELKQIAEEKGLPPAVL--LF-EPHPSEQFNWLTAPA-LTPLEDKARQLQIK--GVEQLLVVVF 76 (288)
T ss_pred EEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEE--Ee-CCChHHHhCccCCCC-CCCHHHHHHHHHHc--CCCEEEEeCC
Confidence 35999999999999999998754 3334433 22 2321 111112 78899999999864 3455666665
Q ss_pred c
Q 030661 98 E 98 (173)
Q Consensus 98 E 98 (173)
.
T Consensus 77 ~ 77 (288)
T TIGR00083 77 D 77 (288)
T ss_pred C
Confidence 3
No 64
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.02 Score=51.29 Aligned_cols=72 Identities=21% Similarity=0.115 Sum_probs=52.7
Q ss_pred hhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhc
Q 030661 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACK 87 (173)
Q Consensus 8 ~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~ 87 (173)
..++..++ .+..++++. --|+||+|.||-.|.+.|++.. |.+.+-|-.- . .|.+-++++.|++-.+..++
T Consensus 172 ~~~R~~f~-~kgwk~vva-fQTRNp~HraHEyl~K~Al~~v--dgllv~plVG----~--tk~gD~~~e~rm~~ye~l~~ 241 (397)
T COG2046 172 AETREVFK-EKGWKTVVA-FQTRNPPHRAHEYLQKRALEKV--DGLLVHPLVG----A--TKPGDIPDEVRMEYYEALLK 241 (397)
T ss_pred HHHHHHHH-hcCCeEEEE-EecCCCchHHHHHHHHHHHHhc--CcEEEEeeec----c--ccCCCchHHHHHHHHHHHHH
Confidence 34455555 455666654 5899999999999999999988 6665543221 1 24577999999999999998
Q ss_pred CC
Q 030661 88 SS 89 (173)
Q Consensus 88 ~~ 89 (173)
.+
T Consensus 242 ~Y 243 (397)
T COG2046 242 HY 243 (397)
T ss_pred hC
Confidence 74
No 65
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=96.01 E-value=0.044 Score=45.57 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=58.4
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
.+++.++..+-++|+++. |-||+|.||-.+.+.|++.+ -|.+.+.|..- + .|.+-.+.+-|++-.+..+++
T Consensus 10 e~r~~~~~~gw~~Vvafq--trnPlHraHe~l~~~a~e~~-~~~lll~plvG-~-----~k~~d~~~~~r~~~~~~~~~~ 80 (215)
T PF01747_consen 10 ETRELFKEKGWRRVVAFQ--TRNPLHRAHEYLMRRALEKA-GDGLLLHPLVG-P-----TKPGDIPYEVRVRCYEALIDN 80 (215)
T ss_dssp HHHHHHHHTT-SSEEEEE--ESS---HHHHHHHHHHHHHH-TSEEEEEEBES-B------STTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEE--eCCCCCHHHHHHHHHHHHHh-cCcEEEEeccC-C-----CCcCCCCHHHHHHHHHHHHHH
Confidence 455555544556788863 39999999999999999998 47787766432 2 246779999999999999988
Q ss_pred C---CCeEEeecccc
Q 030661 89 S---DFIMVDPWEAN 100 (173)
Q Consensus 89 ~---~~i~v~~~E~~ 100 (173)
+ +.+.+..+...
T Consensus 81 y~p~~~v~l~~lp~~ 95 (215)
T PF01747_consen 81 YFPKNRVLLSPLPLP 95 (215)
T ss_dssp CSSTTGEEEEBBESB
T ss_pred hCCCCcEEEeccCch
Confidence 3 46777766554
No 66
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=95.52 E-value=0.06 Score=47.84 Aligned_cols=82 Identities=18% Similarity=0.081 Sum_probs=57.8
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
+++.++...-++++++ =|-||+|.||..+.+.|++.++-+.+.+.|..- + .|.+-++.+-|++-.+.++++.
T Consensus 147 ~R~~f~~~gw~~Vvaf--qtrnP~HraHe~l~~~a~~~~~~~~lll~plvG-~-----~k~~d~~~~~r~~~~~~l~~~y 218 (353)
T cd00517 147 LRALFKERGWRRVVAF--QTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVG-W-----TKPGDVPDEVRMRAYEALLEEY 218 (353)
T ss_pred HHHHHHHcCCCeEEEe--ecCCCCchhhHHHHHHHHHHcCCCcEEEEeccC-C-----CCCCCCCHHHHHHHHHHHHHhC
Confidence 4444443333467663 789999999999999999987545666655431 2 2467799999999999999884
Q ss_pred C---CeEEeeccc
Q 030661 90 D---FIMVDPWEA 99 (173)
Q Consensus 90 ~---~i~v~~~E~ 99 (173)
+ .+.+..+..
T Consensus 219 ~~~~~~~l~~lp~ 231 (353)
T cd00517 219 YLPERTVLAILPL 231 (353)
T ss_pred CCCCcEEEEeccc
Confidence 3 555665554
No 67
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=95.37 E-value=0.026 Score=50.28 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.8
Q ss_pred CcCChhhHHHHHHHHHHHHhhCCCcEE-EEecccCCCCcccccCCCCCHHHHHHHHHHH
Q 030661 28 GSFNPPTFMHLRMFELARDTLNSEGYC-VIGGYMSPVNDAYKKRGLISAEHRINLCNLA 85 (173)
Q Consensus 28 GSFdP~H~GHl~ia~~a~~~l~ld~v~-vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~la 85 (173)
--|||+|+||..+++.|.+.++-|.++ +|++-..-. +.-.+.+.-+|.+|.-..
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~qR----gepai~~k~~r~~~aL~~ 62 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQR----GEPAIGHKWERKKMALEG 62 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecchhhc----CCCccccHHHHHhhhhhc
Confidence 579999999999999999988877754 444332111 123467777888886543
No 68
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=94.80 E-value=0.056 Score=47.54 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=68.6
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc-CCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK-RGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K-~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
+..-|.||-+|+||-+.+.+|++.- |++++ +. .+--.-...| .+..+.++|++|++. ..|+ + =.+...
T Consensus 11 Vw~DGCfDm~HyGHanaLrQAkalG--dkLiv-GV-HsDeeI~~nKGpPV~t~eERy~~v~~----ikWV--D-EVV~~A 79 (358)
T KOG2803|consen 11 VWADGCFDMVHYGHANALRQAKALG--DKLIV-GV-HSDEEITLNKGPPVFTDEERYEMVKA----IKWV--D-EVVEGA 79 (358)
T ss_pred EEeccchhhhhhhhhHHHHHHHHhC--CeEEE-Ee-cchHHHHhcCCCCcccHHHHHHHHhh----cchh--h-hhhcCC
Confidence 3459999999999999999998654 66643 22 1111111112 357899999999873 2332 1 111222
Q ss_pred cccchHHHHHHHHHHcC---Ccc--cCCccchHHHhcCCccEEEEecCCchHHHHHHH
Q 030661 103 GYQRTLTVLSRVKNFLI---EAG--LISTGKKQNYIFPPCSASVELSCMSVSLCLIYL 155 (173)
Q Consensus 103 ~~syT~~TL~~lk~~~p---~D~--l~~l~~W~e~L~~~~~~vV~~r~~~~~~~~~~~ 155 (173)
....|.+++++..-.|- .|- ..+-..=|+..-+.-.+-.+.|+.++|++.+.-
T Consensus 80 Pyvtt~~~md~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTTelvg 137 (358)
T KOG2803|consen 80 PYVTTLEWMDKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTTELVG 137 (358)
T ss_pred CeeccHHHHHHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchhhhhh
Confidence 33455555533322221 331 122222234444455677889999998887653
No 69
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=94.22 E-value=0.18 Score=45.44 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=55.2
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
.+++.++..+-++++++ =|-||+|.||..|.+.|.+.. |.+.+-|-. -+ .|.+-++.+-|++-.+.++++
T Consensus 176 e~r~~f~~~gw~~Vvaf--qTrnP~HraHe~l~~~a~e~~--d~lll~plv-G~-----~k~~di~~~~r~~~~~~~~~~ 245 (391)
T PRK04149 176 ETRELFEEKGWKTVVAF--QTRNPPHRAHEYLQKCALEIV--DGLLLNPLV-GE-----TKSGDIPAEVRMEAYEALLKN 245 (391)
T ss_pred HHHHHHHHcCCCeEEEe--ecCCCCchHHHHHHHHHHHhc--CeEEEecCc-CC-----CCCCCCCHHHHHHHHHHHHHh
Confidence 34444443333566663 679999999999999999976 655442332 11 256779999999999999985
Q ss_pred -C--CCeEEeeccc
Q 030661 89 -S--DFIMVDPWEA 99 (173)
Q Consensus 89 -~--~~i~v~~~E~ 99 (173)
. +.+.+..+..
T Consensus 246 y~p~~~v~l~~lp~ 259 (391)
T PRK04149 246 YYPKDRVLLSVTPA 259 (391)
T ss_pred cCCCCcEEEEeccc
Confidence 2 3555665554
No 70
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.23 E-value=0.33 Score=45.61 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=54.8
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
+++.++..+-++++++ =|-||+|.||..+++.|++.++. .+.+ +|.-- ..|.+-++++-|++-.+.++++.
T Consensus 177 ~r~~f~~~gw~~v~af--qtrnP~Hr~He~l~~~a~~~~d~-~lll-----~p~~G-~~k~~d~~~~~r~~~~~~~~~~~ 247 (568)
T PRK05537 177 LRARFRKLGWRRVVAF--QTRNPLHRAHEELTKRAAREVGA-NLLI-----HPVVG-MTKPGDIDHFTRVRCYEALLDKY 247 (568)
T ss_pred HHHHHHHcCCCcEEEE--ecCCCCcHHHHHHHHHHHHhcCC-eEEE-----ecCCC-CCCCCCCCHHHHHHHHHHHHHhC
Confidence 3444443334567664 67999999999999999998732 4533 34221 12567799999999999999876
Q ss_pred C--CeEEeeccc
Q 030661 90 D--FIMVDPWEA 99 (173)
Q Consensus 90 ~--~i~v~~~E~ 99 (173)
| .+.+..+..
T Consensus 248 p~~~~~l~~~p~ 259 (568)
T PRK05537 248 PPATTLLSLLPL 259 (568)
T ss_pred CCCcEEEEeccc
Confidence 5 344555444
No 71
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=93.06 E-value=0.15 Score=44.55 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred cCcCChhhHHHHHHHHHHHHhhCCCcE-EEEecccCCCCccccc-----CCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 27 TGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMSPVNDAYKK-----RGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 27 GGSFdP~H~GHl~ia~~a~~~l~ld~v-~vvp~~~~P~k~~~~K-----~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
=|.||=+|.||..+++.|.+....+.+ .+|-+. .|+-....+ ..+.+.++|+++++.. +.+.+.+.+|..+
T Consensus 21 IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF-~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~--gvd~~~v~~F~~~ 97 (304)
T COG0196 21 IGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITF-EPHPRELLKPDKPPTRLTPLREKIRLLAGY--GVDALVVLDFDLE 97 (304)
T ss_pred EEcCCccchhHHHHHHHHHHHHHHhCCceEEEEe-cCCCHHHcCCCCCccccCCHHHHHHHHHhc--CCcEEEEEeCCHh
Confidence 499999999999999999866643332 223232 333221111 1278899999998754 3446667777643
No 72
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=92.84 E-value=0.3 Score=42.84 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=78.8
Q ss_pred ccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC-CCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 030661 15 KTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS-PVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (173)
Q Consensus 15 ~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~-P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~ 93 (173)
..|.-.++-++.-|-||-+|.||..-+++|.+.|. .|++|.|.-+ -.-..++-....+..+|.+-++-.= |
T Consensus 57 ~~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FP--NvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCr----y-- 128 (348)
T KOG2804|consen 57 GLPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFP--NVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCR----Y-- 128 (348)
T ss_pred CCCCCCceEEEccchHHHhhhhHHHHHHHHHHhCC--CeEEEEeecCchhhhhccCceecChHHHHHHhhhhh----h--
Confidence 45556778788899999999999999999999994 4554443211 1111222235788999998876431 1
Q ss_pred Eeeccc-cCCcccchHHHHHHHHHHcC-CcccCC----ccchHHHhcCCccEEEEecCCchHHHHH-HHHHHhh
Q 030661 94 VDPWEA-NQSGYQRTLTVLSRVKNFLI-EAGLIS----TGKKQNYIFPPCSASVELSCMSVSLCLI-YLIFHKY 160 (173)
Q Consensus 94 v~~~E~-~~~~~syT~~TL~~lk~~~p-~D~l~~----l~~W~e~L~~~~~~vV~~r~~~~~~~~~-~~~~~~~ 160 (173)
|+ |+ ....+.-|.+-|...|=-|- -|.+.. -+.-|+.+-+.--|+--.|+.++||--| -+|..-|
T Consensus 129 VD--EVi~~APW~lt~EFL~~HKIDfVAHDdIPY~s~gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDY 200 (348)
T KOG2804|consen 129 VD--EVIPNAPWTLTPEFLEKHKIDFVAHDDIPYVSAGSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDY 200 (348)
T ss_pred hh--hhccCCCccccHHHHHhcccceeeccCccccCCCchhHHHHHHHhcccccccccCCccHHHHHHHHHHhH
Confidence 00 11 11223344444444333331 232211 1233366666677888999998887543 3444443
No 73
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=88.97 E-value=0.8 Score=40.45 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=40.4
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC-CCCcccccC--CCCCHHHHHHHHHHHhcCCCCeEE
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS-PVNDAYKKR--GLISAEHRINLCNLACKSSDFIMV 94 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~-P~k~~~~K~--~~~s~~~Rl~Ml~lai~~~~~i~v 94 (173)
.+++.-|.||=+|.||+..++.|.+.. |.+++ +... +.-+.|... ++.+..+|.=- -+||+=-+.+.|
T Consensus 199 kvVYvdGaFDLFH~GHl~~Le~ak~lg--dyLIv--GI~~D~~vneykgs~~PiMnl~ER~Ls-vlackyVdeVvv 269 (358)
T KOG2803|consen 199 KVVYVDGAFDLFHAGHLDFLEKAKRLG--DYLIV--GIHTDQTVNEYKGSNYPIMNLHERVLS-VLACKYVDEVVV 269 (358)
T ss_pred cEEEEcCchhhhccchHHHHHHHHhcc--CceEE--EeecCcchhhhccCCCccchHHHHHHH-HhhhcccceEEE
Confidence 344559999999999999999999987 54433 3322 221222212 46777777522 234554344433
No 74
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.21 E-value=1.9 Score=39.44 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=70.3
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc-ccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccC
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY-KKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~-~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~ 101 (173)
+.+.-|.||=.|-||..-.+.|+.+. |+++|--+.-.-.+.-. ..+++-+.++|+.++. +++.-+++- -|+-
T Consensus 334 vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa-~L~~VD~vV--~F~e-- 406 (467)
T COG2870 334 VVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLA-ALESVDLVV--IFDE-- 406 (467)
T ss_pred EEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHh-hcccceEEE--EecC--
Confidence 55679999999999999999999987 77655332211111110 1235677788887765 555555543 2322
Q ss_pred CcccchHHHHHHHHHHcCCcccCCccchH-HHhcC---------CccEEEEecCCchHH
Q 030661 102 SGYQRTLTVLSRVKNFLIEAGLISTGKKQ-NYIFP---------PCSASVELSCMSVSL 150 (173)
Q Consensus 102 ~~~syT~~TL~~lk~~~p~D~l~~l~~W~-e~L~~---------~~~~vV~~r~~~~~~ 150 (173)
||=.+|-+....|-+..-..|+ ++|.. .+-++-+.-..|+|.
T Consensus 407 -------dTP~~LI~~~~PdilVKGgDy~~~~i~g~~~v~~~GG~v~~i~f~~g~STt~ 458 (467)
T COG2870 407 -------DTPEELIEAVKPDILVKGGDYKIEKIVGADIVEAYGGEVLLIPFEEGKSTTK 458 (467)
T ss_pred -------CCHHHHHHHhCcceEEccCCCChhhccchhhhhhcCCeEEEEecccCCcHHH
Confidence 3445566666678888888898 55443 334444555555444
No 75
>PLN02660 pantoate--beta-alanine ligase
Probab=87.82 E-value=1.1 Score=38.79 Aligned_cols=50 Identities=16% Similarity=0.026 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+.. |.+ ++--..+|..-+. ..+...+.++|+++++.+
T Consensus 32 LH~GH~~LI~~a~~~a--~~v-VvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 32 LHEGHLSLVRAARARA--DVV-VVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred hhHHHHHHHHHHHHhC--CEE-EEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 9999999999999976 332 3322334433110 123567899999999876
No 76
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=85.85 E-value=2.7 Score=36.23 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+.. +.+ ++.-..+|..-+. ..+...+.++++++++.+
T Consensus 33 LH~GH~~LI~~a~~~a--~~v-Vvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 33 LHEGHLSLVRRARAEN--DVV-VVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred ccHHHHHHHHHHHHhC--CEE-EEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 9999999999999976 443 4433445543110 123467899999999876
No 77
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=83.04 E-value=3.8 Score=35.35 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+|.||..+++.|.+.. +.+ ++.-..+|..-.. ..+...+.++|+++++.+
T Consensus 33 lH~GH~~Li~~a~~~a--~~v-VvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 33 LHEGHLSLVREARAEA--DIV-VVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred eeHHHHHHHHHHHHhC--CEE-EEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 9999999999999876 433 3333334432110 123467899999999876
No 78
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=81.82 E-value=4.7 Score=34.90 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+.. +.+ ++.-..+|..-.. ..+...+.++|+++++.+
T Consensus 33 LH~GH~~LI~~a~~~a--~~v-VvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 33 LHDGHMSLIDRAVAEN--DVV-VVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred ccHHHHHHHHHHHHhC--CeE-EEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 9999999999999976 433 3333344432110 123467889999999876
No 79
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=78.07 E-value=19 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=40.7
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
|-....|++||- .+..|+.. |.|.|.|++|...-.+- ..+-.-.+.|++.++.++..
T Consensus 33 Irv~CsGrvn~~------fvl~Al~~-GaDGV~v~GC~~geCHy---~~GN~ka~rR~~~lke~l~e 89 (132)
T COG1908 33 IRVMCSGRVNPE------FVLKALRK-GADGVLVAGCKIGECHY---ISGNYKAKRRMELLKELLKE 89 (132)
T ss_pred EEeeccCccCHH------HHHHHHHc-CCCeEEEecccccceee---eccchHHHHHHHHHHHHHHH
Confidence 335678999995 33344443 67999998886655432 35667789999999999876
No 80
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=70.09 E-value=10 Score=32.82 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+.++.+ .|=-=.|.||+.+++.|.... | +.+|.-+.||..-+. ..+..-+.+.=+++++.+
T Consensus 22 ~~igfV--PTMGaLHeGHlsLi~~A~~~~--d-~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~ 85 (280)
T PF02569_consen 22 KTIGFV--PTMGALHEGHLSLIRRARAEN--D-VVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA 85 (280)
T ss_dssp SSEEEE--EE-SS--HHHHHHHHHHHHHS--S-EEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT
T ss_pred CeEEEE--CCCchhhHHHHHHHHHHHhCC--C-EEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc
Confidence 455543 344446999999999999875 4 446666777764221 123445567777888765
No 81
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=70.00 E-value=10 Score=35.39 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+++. =.|=-=.|.||+.+++.|.+.. |.| ||.-+.||..-+. ..+..-+.+.=+++++.+
T Consensus 21 ~ig~--VPTMG~LH~GHlsLi~~A~~~~--d~v-VvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~ 83 (512)
T PRK13477 21 TIGF--VPTMGALHQGHLSLIRRARQEN--DVV-LVSIFVNPLQFGPNEDLERYPRTLEADRELCESA 83 (512)
T ss_pred cEEE--ECCCcchhHHHHHHHHHHHHhC--CEE-EEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc
Confidence 5554 3555668999999999999985 544 6666777764322 123456778888888776
No 82
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.75 E-value=24 Score=30.09 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=62.0
Q ss_pred eEEEEecCcCChhhHHH---------HHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCC
Q 030661 21 YVVLVATGSFNPPTFMH---------LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF 91 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GH---------l~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~ 91 (173)
.+-+++||+|+|-+.-+ +..+.++++.+++. |+ ..|+. ..-++++.. .-+.
T Consensus 42 g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~---~~---Tev~d-----------~~~v~~~~e---~vdi 101 (250)
T PRK13397 42 GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL---SV---SEIMS-----------ERQLEEAYD---YLDV 101 (250)
T ss_pred CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC---EE---EeeCC-----------HHHHHHHHh---cCCE
Confidence 34567899999876321 45555556666543 22 12222 123444433 2445
Q ss_pred eEEeeccccCCcccchHHHHHHHHHHc-C----CcccCCccchH---HHhcCC--ccEEEEecCCchHHH
Q 030661 92 IMVDPWEANQSGYQRTLTVLSRVKNFL-I----EAGLISTGKKQ---NYIFPP--CSASVELSCMSVSLC 151 (173)
Q Consensus 92 i~v~~~E~~~~~~syT~~TL~~lk~~~-p----~D~l~~l~~W~---e~L~~~--~~~vV~~r~~~~~~~ 151 (173)
+.|-.++..+ ++-|++..+.- | .-.+.+++.|. +.|.+. -+++++.||++.+-+
T Consensus 102 lqIgs~~~~n------~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~ 165 (250)
T PRK13397 102 IQVGARNMQN------FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDV 165 (250)
T ss_pred EEECcccccC------HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCC
Confidence 6666555543 56666665543 3 44588999999 776642 369999999877653
No 83
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=66.49 E-value=6.4 Score=30.71 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=42.0
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHH-HHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHh
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHL-RMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLAC 86 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl-~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai 86 (173)
.++.+|......+++++ ||.++|-+.+=. ..+.+.++.+..|...+-+++.++. .+......-..+++.++
T Consensus 52 ~ia~~l~~~~~~~vi~~-GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~------~G~~~~~~~~a~vk~~~ 123 (161)
T PF00455_consen 52 PIANELSENPNIEVILL-GGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISEE------GGLTTSDEEEAEVKRAM 123 (161)
T ss_pred HHHHHHHhcCceEEEEe-CCEEEcCCCcEECchHHHHHHhhccceEEecccEecCC------CccccchHHHHHHHHHH
Confidence 34555554344566665 999999763322 2456777888889887766666652 34444444444444433
No 84
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=66.23 E-value=9.3 Score=32.05 Aligned_cols=53 Identities=4% Similarity=-0.146 Sum_probs=34.9
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHH-HHHHHHHHhhCCCcEEEEecccCC
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHL-RMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl-~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
.++.+|.+.....++++ ||.++|-+.+=. .++..+++.+..|...+-++++.+
T Consensus 124 ~ia~~l~~~~~~~vill-GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~ 177 (252)
T PRK10906 124 NVANTLMAKEDFRIILA-GGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDS 177 (252)
T ss_pred HHHHHHhhCCCCEEEEE-CCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECC
Confidence 34556653333456654 999999985433 456677888888988666666654
No 85
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=65.94 E-value=16 Score=33.26 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=30.7
Q ss_pred CcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 51 EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 51 d~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
+-++++|+.++|.. ...|.+.|.++++.|=+.+-+|--||+-
T Consensus 228 k~~y~~P~~qNPtG------~tms~~rR~~Ll~lA~~~~~~IIEDD~y 269 (459)
T COG1167 228 KAVYVTPTFQNPTG------VTMSLERRKALLALAEKYDVLIIEDDYY 269 (459)
T ss_pred cEEEECCCCCCCCC------CccCHHHHHHHHHHHHHcCCeEEeeCcc
Confidence 34889999999964 4589999999999994444455555553
No 86
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=65.10 E-value=74 Score=26.98 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=53.8
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcc---------cccCCCCCHHHHHHHHHHHhcCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDA---------YKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~---------~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
..++|+-||..=.||-..++...++..+.+. |.+.|+..|+--.+.. +.=+..-+.++|+++.+...+..
T Consensus 102 ~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~-d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~ 180 (237)
T PF00837_consen 102 NRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS-DVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF 180 (237)
T ss_pred CCCeEEEcccccchHHHHHHHHHHHHHHHhh-hhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC
Confidence 4678888888889999999999999888875 4344444443221111 11124578899999999988775
Q ss_pred C--CeEEeeccc
Q 030661 90 D--FIMVDPWEA 99 (173)
Q Consensus 90 ~--~i~v~~~E~ 99 (173)
+ .+-|++.+.
T Consensus 181 ~~~pi~vD~mdN 192 (237)
T PF00837_consen 181 PQCPIVVDTMDN 192 (237)
T ss_pred CCCCEEEEccCC
Confidence 5 355666543
No 87
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=61.63 E-value=16 Score=31.83 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=39.8
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
++|+++ =|-.=.|.||+.+++.|.+.- |.| |+--+.||..-.. ..+..-+.++=+++++..
T Consensus 22 k~Vg~V--PTMG~LH~GHlsLVr~A~~~~--d~V-VVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~ 85 (285)
T COG0414 22 KRVGLV--PTMGNLHEGHLSLVRRAKKEN--DVV-VVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKE 85 (285)
T ss_pred CEEEEE--cCCcccchHHHHHHHHHhhcC--CeE-EEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhc
Confidence 445543 455568999999999999875 554 5666778864321 122356667777777765
No 88
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=58.51 E-value=26 Score=32.12 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=37.9
Q ss_pred CcCChhhHHHHHHHHHHHHhhC---CCc-EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 28 GSFNPPTFMHLRMFELARDTLN---SEG-YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 28 GSFdP~H~GHl~ia~~a~~~l~---ld~-v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
--=||+|+||--+++...+.+- ... |.++ .|.. .+.|.+-.+...|+..-...++.
T Consensus 422 qlrnpvhnghallm~dt~~~ll~~g~k~pvlll----hplg-gwtkdddvpl~~rmkqh~avl~e 481 (627)
T KOG4238|consen 422 QLRNPVHNGHALLMQDTRRRLLERGYKHPVLLL----HPLG-GWTKDDDVPLDWRMKQHAAVLEE 481 (627)
T ss_pred eecCccccchhhHhHhHHHHHHHhcccCceEEE----ecCC-CCccCCCccchhhhHHHHHHHHh
Confidence 4459999999999998877662 222 4332 3432 23456778888998887777764
No 89
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=52.92 E-value=21 Score=29.86 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=33.3
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHH-HHHHHHhhCCCcEEEEecccCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRM-FELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~i-a~~a~~~l~ld~v~vvp~~~~P 62 (173)
++.+|.+....+++++ ||.++|-+.+-.-. +...++.+..|.-.+-+++.++
T Consensus 126 i~~~l~~~~~~~vill-GG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~ 178 (252)
T PRK10681 126 TFLALQEKPHCRAILC-GGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHV 178 (252)
T ss_pred HHHHHhhCCCCEEEEE-CcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecC
Confidence 3445543333456654 99999987554433 3567788888987666666655
No 90
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=50.85 E-value=76 Score=23.81 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=42.4
Q ss_pred CCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 17 ~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
++..-|-+-..|+.||.|.-| |++. |.|.|+|+.|...-.. ...+..-.+.|+++++..++.
T Consensus 27 ~~vriIrvpC~Grv~~~~il~------Af~~-GADGV~V~gC~~g~Ch---~~~Gn~~a~~Rv~~~k~~L~~ 88 (124)
T PF02662_consen 27 PNVRIIRVPCSGRVDPEFILR------AFEK-GADGVLVAGCHPGDCH---YREGNYRAEKRVERLKKLLEE 88 (124)
T ss_pred CCeEEEEccCCCccCHHHHHH------HHHc-CCCEEEEeCCCCCCCC---cchhhHHHHHHHHHHHHHHHH
Confidence 333444466799999987644 5554 6899999888532221 124556678999999999876
No 91
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=50.31 E-value=1e+02 Score=22.84 Aligned_cols=80 Identities=13% Similarity=0.046 Sum_probs=39.1
Q ss_pred CChhhhhcccccCCcceEEEEecCcCChhhHHH--HHHHHHHHHhhCCCcEEEEecccCCCCcccc-cCCCCCHHHHHHH
Q 030661 5 LPLEKLSLESKTQGKTYVVLVATGSFNPPTFMH--LRMFELARDTLNSEGYCVIGGYMSPVNDAYK-KRGLISAEHRINL 81 (173)
Q Consensus 5 ~p~~~~~~~~~~~~~~~ii~lfGGSFdP~H~GH--l~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K~~~~s~~~Rl~M 81 (173)
||-+.+.-+++..-+.+-+.+...+.+|++.-. +.++-.|++..+.++|.+|.-|.+-.++... ....++...=.+|
T Consensus 32 F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~l 111 (116)
T PF13793_consen 32 FPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKL 111 (116)
T ss_dssp -TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHH
T ss_pred cCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHH
Confidence 555555555653333333444477778865444 4455666777788888777666655544211 1124555555566
Q ss_pred HHH
Q 030661 82 CNL 84 (173)
Q Consensus 82 l~l 84 (173)
++.
T Consensus 112 L~~ 114 (116)
T PF13793_consen 112 LSA 114 (116)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 92
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=48.12 E-value=97 Score=27.60 Aligned_cols=42 Identities=7% Similarity=-0.037 Sum_probs=28.2
Q ss_pred HHHHHHHHHHc-C----CcccCCccchH---HHhcCC--ccEEEEecCCchH
Q 030661 108 LTVLSRVKNFL-I----EAGLISTGKKQ---NYIFPP--CSASVELSCMSVS 149 (173)
Q Consensus 108 ~~TL~~lk~~~-p----~D~l~~l~~W~---e~L~~~--~~~vV~~r~~~~~ 149 (173)
++-|+++.+.- | ...+.+++.|. +.|.+. -+++++.||++++
T Consensus 215 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~y 266 (360)
T PRK12595 215 FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTY 266 (360)
T ss_pred HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCC
Confidence 45566555443 2 34457899999 666542 3699999999864
No 93
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=44.28 E-value=28 Score=29.08 Aligned_cols=49 Identities=12% Similarity=0.055 Sum_probs=30.6
Q ss_pred hhhcccccCCcceEEEEecCcCChhh---HHHHHHHHHHHHhhCCCcEEEEecccC
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPT---FMHLRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H---~GHl~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
.++..|.+.+...+++ .||.++|-. .|.. + ..++.+..|...+-.++++
T Consensus 125 ~ia~~l~~~~~~~v~l-~GG~~~~~~~~~~G~~--~-~~l~~~~~d~aFig~~gi~ 176 (251)
T PRK13509 125 PLANYLIDQEHDSVII-MGGQYNKSQSITLSPQ--G-SENSLYAGHWMFTSGKGLT 176 (251)
T ss_pred HHHHHHHhCCCCEEEE-ECCeEcCCcceeECHH--H-HHHHhCcCCEEEECCCcCC
Confidence 3455554333345655 499999985 5663 3 5678888888755444443
No 94
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=41.89 E-value=1e+02 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.7
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
--++.++.++..|.-..++.-++++.+.++-+.+.++...
T Consensus 27 ~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 27 PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 3444555555999999999999999988876677766443
No 95
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=40.20 E-value=51 Score=27.60 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=31.8
Q ss_pred hhccccc-CCcceEEEEecCcCChhhHHHH-HHHHHHHHhhCCCcEEEEecccCC
Q 030661 10 LSLESKT-QGKTYVVLVATGSFNPPTFMHL-RMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 10 ~~~~~~~-~~~~~ii~lfGGSFdP~H~GHl-~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
++.+|.+ +....+++ .||.++|-..+-. ..+..+++.+..|...+-.++.++
T Consensus 125 ia~~l~~~~~~~~v~l-~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~ 178 (256)
T PRK10434 125 IVNALSELDNEQTILM-PGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDL 178 (256)
T ss_pred HHHHHhhCCCCCEEEE-ECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecC
Confidence 4555543 22235665 5999999764322 234577788888987665555544
No 96
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=36.76 E-value=92 Score=30.04 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=54.3
Q ss_pred ecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC-----CCeEEeeccc-
Q 030661 26 ATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS-----DFIMVDPWEA- 99 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~-----~~i~v~~~E~- 99 (173)
-=|-|-|...|+..++...++.- .+ |+. .|.... ..=..++.+++.++++.-++++ .++.+...+.
T Consensus 141 wrge~~p~~~~e~~~i~~~l~~e---~f---~~~-~~~~~~-~~~~~l~~~eq~~~l~~rl~~ys~k~y~k~~~~~~~~~ 212 (621)
T cd05535 141 WRGEYFPASRGEYERIKQQLESE---KF---PPL-FPGGPP-KSFHELSPEEQAEELKKRLKDYSRKVYKKTHVTKEEER 212 (621)
T ss_pred eeecccCCCHHHHHHHHHHHHhc---cc---CCc-CCCCCC-cchhhCCHHHHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence 46899999999999999888753 21 111 222211 0013578889999988877763 2333333222
Q ss_pred ----cCCcccchHHHHHHHHHH
Q 030661 100 ----NQSGYQRTLTVLSRVKNF 117 (173)
Q Consensus 100 ----~~~~~syT~~TL~~lk~~ 117 (173)
-|-+.++-+||++.|+.+
T Consensus 213 ~~~vCqrEn~Fyvdtvr~Frdr 234 (621)
T cd05535 213 STTICQRENPFYVDTVRAFRDR 234 (621)
T ss_pred eeeeEeccCCcHHhhHHHHHHH
Confidence 255678999999999966
No 97
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=35.25 E-value=48 Score=27.53 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=32.1
Q ss_pred hhcccccCCcceEEEEecCcCChhh---HHHHHHHHHHHHhhCCCcEEEEecccCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPT---FMHLRMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H---~GHl~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
++..|.+...-.+++ .||.++|-. .|+. +...++.+..|...+-.++.++
T Consensus 126 ia~~l~~~~~~~vil-~GG~~~~~~~~~~G~~--a~~~l~~~~~d~afis~~gi~~ 178 (240)
T PRK10411 126 ICQELGKRERIQLIS-SGGTLERKYGCYVNPS--LISQLKSLEIDLFIFSCEGIDS 178 (240)
T ss_pred HHHHHhcCCCCEEEE-ECCEEeCCCCceECHH--HHHHHHhcCCCEEEEeceeECC
Confidence 444554322245554 599999976 4543 4667788888988666666655
No 98
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.18 E-value=2.6e+02 Score=24.60 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=49.4
Q ss_pred CChhhhhcccccCCcceEEEEecCcCChh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-c-CCCCCHHHHHH
Q 030661 5 LPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHRIN 80 (173)
Q Consensus 5 ~p~~~~~~~~~~~~~~~ii~lfGGSFdP~--H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K-~~~~s~~~Rl~ 80 (173)
||-+.+.-+++..-+.+-+.+.+...+|+ +.-.+-++-.|++..+..+|.+|.-|.+..++... + ....+...-.+
T Consensus 41 FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ 120 (332)
T PRK00553 41 FADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVAD 120 (332)
T ss_pred CCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHH
Confidence 55555555554333334454546666676 45566677778888888888666556655544211 1 23677778888
Q ss_pred HHHHH
Q 030661 81 LCNLA 85 (173)
Q Consensus 81 Ml~la 85 (173)
|++.+
T Consensus 121 ll~~~ 125 (332)
T PRK00553 121 LLTKA 125 (332)
T ss_pred HHHhc
Confidence 88765
No 99
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=32.16 E-value=1.3e+02 Score=27.16 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=60.5
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
+.+++| ||- -+| .|+..|...++.+-+.+-|+..+|...--...-...+++..+..+++-+. + |-+||.
T Consensus 2 ~tvgIl-GGG----QLg--rMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~-D---ViT~Ef 70 (375)
T COG0026 2 KTVGIL-GGG----QLG--RMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKC-D---VITYEF 70 (375)
T ss_pred CeEEEE-cCc----HHH--HHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhC-C---EEEEee
Confidence 456665 652 133 46666777788765555556666644310111123334455555555433 2 667887
Q ss_pred cCCcccchHHHHHHHHHHcC----CcccC-CccchH-HHhcCCccEEEEecCCchHHHHHHHHH
Q 030661 100 NQSGYQRTLTVLSRVKNFLI----EAGLI-STGKKQ-NYIFPPCSASVELSCMSVSLCLIYLIF 157 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~p----~D~l~-~l~~W~-e~L~~~~~~vV~~r~~~~~~~~~~~~~ 157 (173)
+.- ..++|..+.+..+ .|.|. .-++|. ++.++.+.+-|.+=++.-+...+-.++
T Consensus 71 E~V----~~~aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~ 130 (375)
T COG0026 71 ENV----PAEALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAA 130 (375)
T ss_pred ccC----CHHHHHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHH
Confidence 652 2456666665543 34332 224555 555555555444444433333333333
No 100
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=31.88 E-value=1.1e+02 Score=26.93 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=34.1
Q ss_pred CHHHHHHHHHH--------Hhc-----CCCCeEEeeccccCCcccchHHHHHHHHHHcC
Q 030661 74 SAEHRINLCNL--------ACK-----SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLI 119 (173)
Q Consensus 74 s~~~Rl~Ml~l--------ai~-----~~~~i~v~~~E~~~~~~syT~~TL~~lk~~~p 119 (173)
+.+.|+++++. .++ +...+-++..=..-.+..-|+++++.+|++++
T Consensus 161 t~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G 219 (308)
T PRK00979 161 SVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFG 219 (308)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcC
Confidence 99999999997 332 13466666554444567799999999999985
No 101
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=30.86 E-value=59 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=26.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV 63 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~ 63 (173)
.++|+. --|--=.|-||+.+++++.++- .+.||.-+.+|.
T Consensus 23 g~tIgf--VPTMG~LHeGH~SLvrqs~~~~---~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 23 GETIGF--VPTMGCLHEGHASLVRQSVKEN---TYTVVSIFVNPS 62 (283)
T ss_pred CCeEEE--ecccccccccHHHHHHHHHhhC---ceEEEEEEechh
Confidence 344543 3556668999999999998875 344444455553
No 102
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=30.85 E-value=1.5e+02 Score=22.53 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=32.0
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
+.+.++++|.+++.|...-.+.-+..+.+.+.-+++.|+.....+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 456788888999999987777777777777754467666544333
No 103
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=30.18 E-value=1.8e+02 Score=20.91 Aligned_cols=39 Identities=21% Similarity=0.096 Sum_probs=29.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
..++.+|.+++.|+=..++.-+....+.+.-+.+.++..
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 344555689999999999988888888876456666543
No 104
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=30.08 E-value=1.7e+02 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=22.2
Q ss_pred cEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 52 GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 52 ~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
-++++|+.+||. ....+.+.|.+++++|-+.
T Consensus 214 ~i~~~p~p~NPT------G~~~s~~~~~~l~~la~~~ 244 (431)
T PRK15481 214 AVILTPRAHNPT------GCSLSARRAAALRNLLARY 244 (431)
T ss_pred EEEECCCCCCCC------CccCCHHHHHHHHHHHHhc
Confidence 355556777775 3468889999999988655
No 105
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=28.88 E-value=1.2e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=18.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARD 46 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~ 46 (173)
.++++++||++.+- .|.-.+++.+.+
T Consensus 202 ~~~ilv~~G~lg~~-k~~~~li~~~~~ 227 (391)
T PRK13608 202 KQTILMSAGAFGVS-KGFDTMITDILA 227 (391)
T ss_pred CCEEEEECCCcccc-hhHHHHHHHHHh
Confidence 45677789999964 566667766544
No 106
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=28.81 E-value=1.3e+02 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
++.++.|-|=||- +-|+.+.+...+.++-+.-+++|-+
T Consensus 185 ~ltILvGNSgd~s-NnHieaL~~L~~~~~~~~kIivPLs 222 (360)
T PF07429_consen 185 KLTILVGNSGDPS-NNHIEALEALKQQFGDDVKIIVPLS 222 (360)
T ss_pred ceEEEEcCCCCCC-ccHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444459999986 8899999998888874443455543
No 107
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=28.57 E-value=79 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=26.4
Q ss_pred ceEEEEecCc--CChhhHHHHHH------HHHHHHhhCCCcEEEEecc
Q 030661 20 TYVVLVATGS--FNPPTFMHLRM------FELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 20 ~~ii~lfGGS--FdP~H~GHl~i------a~~a~~~l~ld~v~vvp~~ 59 (173)
.++.++.||- +|++|+||..- +.+.++..| .+|.+|-+.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G-~~V~~v~Ni 66 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLK-YNVNYAMNI 66 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcC-CceEEEEec
Confidence 4677776775 99999999874 444556555 457775444
No 108
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.43 E-value=68 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.116 Sum_probs=26.6
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+++++-|||+||-|-=--.-|.+|.+. +.|-+ +..+
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei-~ad~l-l~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEI-EADVL-LKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHh-CCcEE-EEec
Confidence 46788888999999987777777776664 44433 4433
No 109
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=28.41 E-value=38 Score=29.84 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=36.2
Q ss_pred hhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 8 ~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.++++-|+..+.+-+|=| +.+++..+=+.+.++..+++++++++|||+
T Consensus 41 ~~v~rlL~~Ar~~GiV~I---~i~~~~~~~~~Le~~L~~~fgL~~a~VVp~ 88 (321)
T COG2390 41 ATVSRLLAKAREEGIVKI---SINSPVEGCLELEQQLKERFGLKEAIVVPS 88 (321)
T ss_pred HHHHHHHHHHHHCCeEEE---EeCCCCcchHHHHHHHHHhcCCCeEEEEcC
Confidence 345555565555555544 566777888889999999999999999987
No 110
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=27.66 E-value=93 Score=29.02 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=25.0
Q ss_pred ceEEEEecC--cCChhhHHHHHH------HHHHHHhhCCCcEEEEec
Q 030661 20 TYVVLVATG--SFNPPTFMHLRM------FELARDTLNSEGYCVIGG 58 (173)
Q Consensus 20 ~~ii~lfGG--SFdP~H~GHl~i------a~~a~~~l~ld~v~vvp~ 58 (173)
.++.++.|| -+||+|+||..- +.+.++..| .+|.+|-+
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G-~~V~~v~N 67 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLG-YRVTHVMN 67 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 456555565 589999999864 444556555 45767653
No 111
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=27.45 E-value=2.3e+02 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=23.6
Q ss_pred CcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 51 EGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 51 d~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
+.++++|+.+||.. ...+.++|.++++.|-+.
T Consensus 173 ~~~~i~~~p~NPTG------~~~s~~~~~~l~~~a~~~ 204 (396)
T PRK09257 173 DVVLLHGCCHNPTG------ADLTPEQWDELAELLKER 204 (396)
T ss_pred CEEEEeCCCCCCCC------CCCCHHHHHHHHHHHHhC
Confidence 35667788777753 458889999999987554
No 112
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=27.36 E-value=3.7e+02 Score=23.15 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=48.1
Q ss_pred CChhhhhcccccCCcceEEEEecCcCChh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-c-CCCCCHHHHHH
Q 030661 5 LPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHRIN 80 (173)
Q Consensus 5 ~p~~~~~~~~~~~~~~~ii~lfGGSFdP~--H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K-~~~~s~~~Rl~ 80 (173)
||-+-..-+++..-+.+-+.+.+.+..|+ +.-.+.++-.|++..+..+|.+|.-|.+..++... + ....+...-.+
T Consensus 23 FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~ 102 (302)
T PLN02369 23 FADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVAN 102 (302)
T ss_pred CCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHH
Confidence 55555555554332333344446655453 55667778888888888888666556655544211 1 13667777788
Q ss_pred HHHHH
Q 030661 81 LCNLA 85 (173)
Q Consensus 81 Ml~la 85 (173)
|++.+
T Consensus 103 lL~~~ 107 (302)
T PLN02369 103 LITEA 107 (302)
T ss_pred HHHhc
Confidence 88764
No 113
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=27.30 E-value=3.3e+02 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=20.9
Q ss_pred cCChhhHHHHHHHHHHHHhh--CCCcEEEEeccc
Q 030661 29 SFNPPTFMHLRMFELARDTL--NSEGYCVIGGYM 60 (173)
Q Consensus 29 SFdP~H~GHl~ia~~a~~~l--~ld~v~vvp~~~ 60 (173)
|-+.+|.||+-.+..++..- +.+-+.+|+++.
T Consensus 43 T~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~t 76 (410)
T PRK13354 43 TAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFT 76 (410)
T ss_pred CCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 55568999988777765543 334466666655
No 114
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=25.86 E-value=3.1e+02 Score=25.64 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=54.5
Q ss_pred EEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEe----------eccccCCcccchHHHHHHHH-HHcC---
Q 030661 54 CVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVD----------PWEANQSGYQRTLTVLSRVK-NFLI--- 119 (173)
Q Consensus 54 ~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~----------~~E~~~~~~syT~~TL~~lk-~~~p--- 119 (173)
+-||++++|.. ..++.+.|-+.+++|=+ ++.+-|+ +|+-..+..+-+... +.|. ...|
T Consensus 208 YTIPTgqNPTG------~tls~errk~iy~LArK-yDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~-~~f~k~l~~sfl 279 (472)
T KOG0634|consen 208 YTIPTGQNPTG------NTLSLERRKKIYQLARK-YDFLIVEDDPYYFLQMNTYNPSLELESPAHSS-SMFLKSLVPSFL 279 (472)
T ss_pred EeCcCCCCCCC------CccCHHHHHHHHHHHHH-cCEEEEecCccceeeccccCCCccccCccccH-HHHHHhhcCCcc
Confidence 45667777753 35888899999998843 3333333 232322212222211 3333 3344
Q ss_pred ----------CcccCCcc------chH-------HHhcCCccEEEEecCCchHHHHHHHHHHhh
Q 030661 120 ----------EAGLISTG------KKQ-------NYIFPPCSASVELSCMSVSLCLIYLIFHKY 160 (173)
Q Consensus 120 ----------~D~l~~l~------~W~-------e~L~~~~~~vV~~r~~~~~~~~~~~~~~~~ 160 (173)
.|+|..+= .|. +.++..+.+.+-. +-..+..-.|..|++.
T Consensus 280 slDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~-pSg~sq~iv~a~l~~w 342 (472)
T KOG0634|consen 280 SLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSG-PSGFSQGIVYAMLKRW 342 (472)
T ss_pred cccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecC-cccccHHHHHHHHHHH
Confidence 34442221 454 7888888877665 6667777777777654
No 115
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=25.71 E-value=77 Score=26.79 Aligned_cols=52 Identities=4% Similarity=-0.063 Sum_probs=31.4
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHH-HHHHHHHHhhCCCcEEEEecccCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHL-RMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl-~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
++.+|...+...+++ .||.++|-+.+=. ..+...++.+..|...+-+++.++
T Consensus 140 ia~~l~~~~~~~v~l-lGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~ 192 (269)
T PRK09802 140 VANALLEAEGVELLM-TGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDL 192 (269)
T ss_pred HHHHHHhCCCCEEEE-ECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecC
Confidence 444554333345665 4999999864222 235566788888887665555543
No 116
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=23.91 E-value=44 Score=27.37 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=21.9
Q ss_pred ceEEEEecCcCChhhHHHHHH------HHHHHHhhCCCcEEEEecc
Q 030661 20 TYVVLVATGSFNPPTFMHLRM------FELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~i------a~~a~~~l~ld~v~vvp~~ 59 (173)
.++-+--..-++|+|.||+.- +.+..+..| .+|.++-+.
T Consensus 21 ~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G-~~V~~~~g~ 65 (213)
T cd00672 21 VTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLG-YKVRYVQNI 65 (213)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcC-CeeEEEeec
Confidence 344333334568899999753 334455555 457665543
No 117
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.84 E-value=2.3e+02 Score=18.87 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.5
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVIGG 58 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~-ld~v~vvp~ 58 (173)
+.+++.|.+|..|+-..-+..+.+..+.++ -+++.||..
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~V 41 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFV 41 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 456788999999999999999999988886 457777643
No 118
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=23.46 E-value=30 Score=25.66 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=8.5
Q ss_pred EEEecCcCChhh
Q 030661 23 VLVATGSFNPPT 34 (173)
Q Consensus 23 i~lfGGSFdP~H 34 (173)
+++ ||||||+-
T Consensus 50 aAi-GGTfd~~~ 60 (102)
T PF14034_consen 50 AAI-GGTFDTFR 60 (102)
T ss_pred HHH-hcCchHHH
Confidence 455 99999973
No 119
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=23.10 E-value=79 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=22.2
Q ss_pred ceEEEEecCcCC---hhhHHHHHH-------HHHHHHhhCCCcEEEEecc
Q 030661 20 TYVVLVATGSFN---PPTFMHLRM-------FELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 20 ~~ii~lfGGSFd---P~H~GHl~i-------a~~a~~~l~ld~v~vvp~~ 59 (173)
++...|.++-.. ++|+||+.- +.+..+..| .+|.++.+.
T Consensus 2 ~~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G-~~v~~~~g~ 50 (556)
T PRK12268 2 MMRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKG-NEVLFVSGS 50 (556)
T ss_pred CCcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcC-CceEecCcC
Confidence 333444566665 799999872 223233333 457776654
No 120
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=22.98 E-value=14 Score=29.25 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=19.3
Q ss_pred ChhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 030661 31 NPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 31 dP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
-|||.||-.+.+.|.- -+|+++|-..+
T Consensus 67 RPpHLGk~~ig~~aav----G~v~~~pP~~~ 93 (154)
T PF11909_consen 67 RPPHLGKQSIGRGAAV----GEVYYVPPIVN 93 (154)
T ss_pred CCCCCCcccccccccc----ceeEEeCchhh
Confidence 6999999999876543 46777765433
No 121
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=22.83 E-value=4.7e+02 Score=23.02 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=46.8
Q ss_pred CChh--hhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc-c-CCCCCHHHHHH
Q 030661 5 LPLE--KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHRIN 80 (173)
Q Consensus 5 ~p~~--~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K-~~~~s~~~Rl~ 80 (173)
||-+ .+.-+++..-+.+-+.+.+.+..|-+.--+-++-.|++..+..+|.+|.-|.+...+... + ....+...-.+
T Consensus 49 FpDGE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ 128 (326)
T PLN02297 49 FPDGFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLAR 128 (326)
T ss_pred CCCCCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHH
Confidence 5555 344333332233334443655556566666667778888888888766656655443211 1 24677777888
Q ss_pred HHHH
Q 030661 81 LCNL 84 (173)
Q Consensus 81 Ml~l 84 (173)
|++.
T Consensus 129 ll~~ 132 (326)
T PLN02297 129 ILSN 132 (326)
T ss_pred HHhc
Confidence 8876
No 122
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=22.29 E-value=1.8e+02 Score=23.80 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=29.2
Q ss_pred cCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 16 TQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 16 ~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
...+++++.++||+.-+.+.+....++++-+.+......|+.+
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tG 53 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITG 53 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 4556777777666665666778888888888876554545443
No 123
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=22.05 E-value=73 Score=22.74 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=22.5
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
..++.+ .+|++||++-- .-++.+.+.+.-.++..+.+.
T Consensus 34 ~~piL~-l~~~~Dp~TP~--~~a~~~~~~l~~s~lvt~~g~ 71 (103)
T PF08386_consen 34 APPILV-LGGTHDPVTPY--EGARAMAARLPGSRLVTVDGA 71 (103)
T ss_pred CCCEEE-EecCcCCCCcH--HHHHHHHHHCCCceEEEEecc
Confidence 344554 59999999743 335555566643455555443
No 124
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=21.67 E-value=76 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.1
Q ss_pred ecCcCChhhHHHHHHHHHHHHhh
Q 030661 26 ATGSFNPPTFMHLRMFELARDTL 48 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l 48 (173)
-|.||||...-|..++..|.+.-
T Consensus 183 ~G~SYNP~~edhqelL~~a~~~E 205 (387)
T PF07767_consen 183 PGQSYNPSFEDHQELLAKAVEKE 205 (387)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHH
Confidence 58999999999999999886653
No 125
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.41 E-value=5.3e+02 Score=22.22 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred CChhhhhcccccCCcceEEEEecCcCChhhHH--HHHHHHHHHHhhCCCcEEEEecccCCCCcccc-c-CCCCCHHHHHH
Q 030661 5 LPLEKLSLESKTQGKTYVVLVATGSFNPPTFM--HLRMFELARDTLNSEGYCVIGGYMSPVNDAYK-K-RGLISAEHRIN 80 (173)
Q Consensus 5 ~p~~~~~~~~~~~~~~~ii~lfGGSFdP~H~G--Hl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~-K-~~~~s~~~Rl~ 80 (173)
||-+.+.-+++.+-+.+-+.+...+..|++-- -+-++-.|++..+..+|.+|.-|.+...+... + ....+...-.+
T Consensus 21 F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~ 100 (304)
T PRK03092 21 FANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVAD 100 (304)
T ss_pred CCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHH
Confidence 56665555665333334344447666676443 34556667777888888766656655544211 1 23678888888
Q ss_pred HHHHH
Q 030661 81 LCNLA 85 (173)
Q Consensus 81 Ml~la 85 (173)
|++.+
T Consensus 101 lL~~~ 105 (304)
T PRK03092 101 LFKTA 105 (304)
T ss_pred HHHhc
Confidence 88865
No 126
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=21.39 E-value=1.2e+02 Score=27.82 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=19.2
Q ss_pred CcCChhhHHHHHH------HHHHHHhhCCCcEEEEecc
Q 030661 28 GSFNPPTFMHLRM------FELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 28 GSFdP~H~GHl~i------a~~a~~~l~ld~v~vvp~~ 59 (173)
.-.+|+|.||..- +.+.++..| .+|.++-+.
T Consensus 32 tvy~~~HiGHar~~v~~Dvl~R~lr~~G-~~V~~v~~~ 68 (463)
T PRK00260 32 TVYDYAHIGHARSFVVFDVLRRYLRYLG-YKVTYVRNI 68 (463)
T ss_pred ccCCCcccccchhHHHHHHHHHHHHhcC-CceEEeecC
Confidence 4578999999763 333444445 457666553
No 127
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=21.15 E-value=4.9e+02 Score=22.45 Aligned_cols=129 Identities=11% Similarity=0.038 Sum_probs=72.0
Q ss_pred hhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhc
Q 030661 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACK 87 (173)
Q Consensus 8 ~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~ 87 (173)
.+|++.|+.+. +++..|.|||.. -++.+..|.+-++.=....+-. ..+-..+..+.++.++.++...+
T Consensus 5 ~~lr~~l~~~~----~~~~pg~~D~lS-------Ari~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~ 72 (290)
T TIGR02321 5 QALRAALDSGR----LFTAMAAHNPLV-------AKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIAS 72 (290)
T ss_pred HHHHHHHhCCC----CEEeccccCHHH-------HHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHh
Confidence 46777777432 334699999863 3445556777775433222211 11112457999999998887776
Q ss_pred CCCCeEEeeccccCCcccchHHHHHHHHHHcC-----Cccc------------CCccch---HHHh------cCCccEEE
Q 030661 88 SSDFIMVDPWEANQSGYQRTLTVLSRVKNFLI-----EAGL------------ISTGKK---QNYI------FPPCSASV 141 (173)
Q Consensus 88 ~~~~i~v~~~E~~~~~~syT~~TL~~lk~~~p-----~D~l------------~~l~~W---~e~L------~~~~~~vV 141 (173)
.-+-=-+-|.|.--+++.-...|++.+.+--- +|+. ..+-.. -++| -...+|+|
T Consensus 73 ~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I 152 (290)
T TIGR02321 73 TVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVV 152 (290)
T ss_pred ccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEE
Confidence 43211344666654444446667776654321 5652 112222 2222 23457999
Q ss_pred EecCCch
Q 030661 142 ELSCMSV 148 (173)
Q Consensus 142 ~~r~~~~ 148 (173)
..|+-+-
T Consensus 153 ~ARTDa~ 159 (290)
T TIGR02321 153 IARVEAL 159 (290)
T ss_pred EEEeccc
Confidence 9998875
No 128
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=20.06 E-value=55 Score=24.84 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=23.1
Q ss_pred CcceEEEEec-CcCChhhHHHHHHHHHHHHhhC-CCcEEEEecc
Q 030661 18 GKTYVVLVAT-GSFNPPTFMHLRMFELARDTLN-SEGYCVIGGY 59 (173)
Q Consensus 18 ~~~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~-ld~v~vvp~~ 59 (173)
....++++.| |+.=|.-..|- +.+..-..++ .-=|.|=||-
T Consensus 60 ~~~~vv~ltGvG~l~P~~R~h~-lL~~l~~~~~~~plv~FyPG~ 102 (126)
T PF08747_consen 60 DDRDVVFLTGVGSLFPFIRSHE-LLNNLQPKFGNVPLVVFYPGE 102 (126)
T ss_pred CCCcEEEEeCcchhcchhhHHH-HHHHHHHHhcCCeEEEECCce
Confidence 3355666655 78889988884 4444444442 2224454543
Done!