Query 030661
Match_columns 173
No_of_seqs 194 out of 1505
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h05_A Uncharacterized protein 100.0 9.2E-36 3.2E-40 237.3 5.6 131 19-158 1-147 (177)
2 1yum_A 'probable nicotinate-nu 100.0 2.3E-32 7.9E-37 226.7 11.9 122 20-145 22-155 (242)
3 2h29_A Probable nicotinate-nuc 100.0 1.6E-31 5.3E-36 212.6 9.6 122 20-145 2-134 (189)
4 1kam_A Deamido-NAD(+), nicotin 100.0 1.4E-30 4.9E-35 207.8 14.4 124 19-146 6-140 (194)
5 1k4m_A NAMN adenylyltransferas 100.0 1.2E-30 4.2E-35 211.1 9.4 123 21-147 3-137 (213)
6 1nup_A FKSG76; NAD biosynthesi 100.0 8.3E-31 2.8E-35 218.1 7.8 124 20-148 5-171 (252)
7 2qtr_A Nicotinate (nicotinamid 100.0 8.7E-30 3E-34 201.3 11.6 123 19-145 1-134 (189)
8 1kqn_A Nmnat, nicotinamide mon 100.0 3.1E-30 1.1E-34 218.2 7.9 129 15-148 2-192 (279)
9 3f3m_A Phosphopantetheine aden 99.9 2E-23 6.8E-28 165.0 11.4 93 20-126 2-97 (168)
10 1vlh_A Phosphopantetheine aden 99.9 3.4E-23 1.2E-27 163.4 10.5 92 22-130 13-104 (173)
11 3nbk_A Phosphopantetheine aden 99.9 9.2E-22 3.1E-26 157.0 11.8 124 17-156 18-155 (177)
12 3nd5_A Phosphopantetheine aden 99.9 1.6E-21 5.5E-26 154.5 10.9 85 19-118 1-86 (171)
13 1qjc_A Phosphopantetheine aden 99.8 1.3E-20 4.5E-25 144.4 11.5 91 23-127 3-96 (158)
14 1o6b_A Phosphopantetheine aden 99.8 3.5E-20 1.2E-24 144.3 11.6 92 19-125 1-95 (169)
15 1od6_A PPAT, phosphopantethein 99.8 3.5E-20 1.2E-24 142.5 11.4 83 24-118 3-85 (160)
16 4f3r_A Phosphopantetheine aden 99.8 2.6E-20 8.7E-25 146.3 8.6 124 18-157 3-140 (162)
17 3k9w_A Phosphopantetheine aden 99.8 2.2E-19 7.6E-24 144.1 12.1 134 8-156 10-157 (187)
18 1f9a_A Hypothetical protein MJ 99.8 2.1E-18 7.2E-23 134.7 10.1 67 23-95 2-70 (168)
19 3nv7_A Phosphopantetheine aden 99.8 2.5E-18 8.5E-23 134.5 9.2 119 19-156 1-137 (157)
20 1ej2_A Nicotinamide mononucleo 99.7 1.4E-17 4.7E-22 131.4 8.0 71 23-99 5-80 (181)
21 1coz_A Protein (glycerol-3-pho 99.7 6.3E-18 2.2E-22 125.9 5.6 119 21-156 2-125 (129)
22 2b7l_A Glycerol-3-phosphate cy 99.7 9.4E-18 3.2E-22 125.6 6.1 122 21-157 2-126 (132)
23 3do8_A Phosphopantetheine aden 99.7 9.4E-18 3.2E-22 129.8 5.7 73 24-99 3-77 (148)
24 2qjt_B Nicotinamide-nucleotide 99.7 3.3E-17 1.1E-21 139.2 8.0 89 19-113 6-98 (352)
25 1lw7_A Transcriptional regulat 99.7 2.2E-17 7.4E-22 142.1 5.9 81 21-106 3-89 (365)
26 1jhd_A Sulfate adenylyltransfe 99.7 8.8E-17 3E-21 141.9 9.5 127 10-146 183-334 (396)
27 2qjo_A Bifunctional NMN adenyl 99.6 2E-16 6.7E-21 133.5 8.1 72 19-97 6-80 (341)
28 1v47_A ATP sulfurylase; produc 99.6 5.7E-16 1.9E-20 134.8 8.6 127 9-147 145-293 (349)
29 3hl4_A Choline-phosphate cytid 99.3 3.1E-12 1.1E-16 105.9 6.2 133 19-159 74-211 (236)
30 3glv_A Lipopolysaccharide core 99.1 3.8E-11 1.3E-15 91.3 3.8 69 20-94 2-71 (143)
31 3elb_A Ethanolamine-phosphate 99.0 9.2E-11 3.2E-15 101.7 4.2 124 17-154 194-331 (341)
32 3elb_A Ethanolamine-phosphate 99.0 1.6E-10 5.6E-15 100.1 5.5 125 18-157 5-138 (341)
33 2x0k_A Riboflavin biosynthesis 98.2 1.5E-06 5.1E-11 75.0 6.7 74 24-100 18-97 (338)
34 1r6x_A ATP:sulfate adenylyltra 97.7 0.00013 4.3E-09 64.4 8.7 106 20-137 188-316 (395)
35 3gmi_A UPF0348 protein MJ0951; 97.6 0.00015 5.1E-09 63.1 7.7 60 20-85 52-112 (357)
36 1g8f_A Sulfate adenylyltransfe 97.5 0.00026 9E-09 64.1 8.9 116 10-137 179-317 (511)
37 1mrz_A Riboflavin kinase/FMN a 97.5 3E-05 1E-09 65.7 1.8 66 25-97 3-74 (293)
38 3op1_A Macrolide-efflux protei 97.3 0.00079 2.7E-08 57.4 8.6 71 26-99 25-103 (308)
39 2ejc_A Pantoate--beta-alanine 96.5 0.0044 1.5E-07 52.2 6.1 61 20-85 22-85 (280)
40 2gks_A Bifunctional SAT/APS ki 96.2 0.0076 2.6E-07 54.6 6.5 70 20-98 164-236 (546)
41 1m8p_A Sulfate adenylyltransfe 96.1 0.0079 2.7E-07 54.9 6.3 72 11-91 182-253 (573)
42 3cr8_A Sulfate adenylyltranfer 93.7 0.2 6.8E-06 45.5 8.0 72 10-90 154-225 (552)
43 3ag6_A Pantothenate synthetase 90.0 0.83 2.8E-05 38.3 7.1 50 33-85 34-86 (283)
44 1v8f_A Pantoate-beta-alanine l 89.1 1 3.4E-05 37.7 7.0 50 33-85 28-80 (276)
45 1x6v_B Bifunctional 3'-phospho 87.9 0.95 3.3E-05 41.8 6.6 80 11-99 404-493 (630)
46 3cov_A Pantothenate synthetase 87.6 0.93 3.2E-05 38.3 5.9 50 33-85 44-97 (301)
47 3inn_A Pantothenate synthetase 87.0 1.8 6E-05 36.9 7.2 59 20-85 43-106 (314)
48 3uk2_A Pantothenate synthetase 82.9 1.9 6.4E-05 36.2 5.4 61 20-85 22-85 (283)
49 3q12_A Pantoate--beta-alanine 79.1 1.8 6E-05 36.5 4.0 50 33-85 36-88 (287)
50 3n8h_A Pantothenate synthetase 73.0 2.2 7.6E-05 35.4 3.0 61 20-85 24-87 (264)
51 3mxt_A Pantothenate synthetase 65.6 7.4 0.00025 32.6 4.7 49 33-85 36-87 (285)
52 2d5b_A Methionyl-tRNA syntheta 49.2 20 0.00069 31.2 4.9 40 19-59 1-49 (500)
53 4fo5_A Thioredoxin-like protei 39.7 76 0.0026 21.6 5.9 41 18-58 31-71 (143)
54 3sp1_A Cysteinyl-tRNA syntheta 39.4 43 0.0015 29.9 5.5 38 21-59 42-87 (501)
55 3lp8_A Phosphoribosylamine-gly 35.5 39 0.0013 29.0 4.5 44 9-58 11-54 (442)
56 3c8z_A Cysteinyl-tRNA syntheta 35.4 22 0.00075 30.5 2.8 40 19-59 37-84 (414)
57 3kfl_A Methionyl-tRNA syntheta 34.6 14 0.00048 33.1 1.5 51 8-59 10-72 (564)
58 3i12_A D-alanine-D-alanine lig 34.3 68 0.0023 26.5 5.7 41 19-60 3-43 (364)
59 3erw_A Sporulation thiol-disul 33.6 1E+02 0.0036 20.4 5.8 41 18-58 33-73 (145)
60 3hdc_A Thioredoxin family prot 33.2 1.1E+02 0.0039 21.1 6.1 42 19-60 41-82 (158)
61 3ixr_A Bacterioferritin comigr 31.0 1.2E+02 0.0041 21.9 6.1 38 20-57 52-90 (179)
62 3raz_A Thioredoxin-related pro 30.8 1.3E+02 0.0044 20.6 6.0 41 18-58 23-63 (151)
63 1li5_A Cysrs, cysteinyl-tRNA s 30.5 40 0.0014 29.4 3.8 39 20-59 21-67 (461)
64 2v1m_A Glutathione peroxidase; 29.9 1E+02 0.0035 21.4 5.3 41 19-59 31-71 (169)
65 3eyt_A Uncharacterized protein 29.9 1E+02 0.0035 21.1 5.3 44 18-61 27-71 (158)
66 3e5n_A D-alanine-D-alanine lig 29.8 88 0.003 26.2 5.7 52 8-61 12-63 (386)
67 3k3p_A D-alanine--D-alanine li 29.5 85 0.0029 26.4 5.6 42 19-61 37-78 (383)
68 3fw2_A Thiol-disulfide oxidore 29.2 1.4E+02 0.0047 20.4 6.0 41 18-58 32-75 (150)
69 2a33_A Hypothetical protein; s 28.5 62 0.0021 25.4 4.2 39 18-56 11-49 (215)
70 1i5g_A Tryparedoxin II; electr 27.6 1.4E+02 0.0049 20.1 5.8 41 18-58 27-68 (144)
71 3gl3_A Putative thiol:disulfid 26.9 1.4E+02 0.0048 20.1 5.6 41 18-58 27-67 (152)
72 3drn_A Peroxiredoxin, bacterio 26.6 1.1E+02 0.0038 21.4 5.1 37 22-58 32-69 (161)
73 2dlc_X Tyrosyl-tRNA synthetase 26.5 34 0.0012 29.4 2.5 49 7-58 26-79 (394)
74 3kij_A Probable glutathione pe 26.3 1.8E+02 0.0061 20.7 9.2 44 19-62 38-81 (180)
75 3tqo_A Cysteinyl-tRNA syntheta 26.1 1.1E+02 0.0039 26.8 5.9 40 20-60 24-71 (462)
76 3or5_A Thiol:disulfide interch 26.1 1.6E+02 0.0054 20.1 6.0 40 19-58 34-73 (165)
77 3dah_A Ribose-phosphate pyroph 25.9 2.8E+02 0.0097 23.0 8.7 81 5-85 39-124 (319)
78 3h99_A Methionyl-tRNA syntheta 25.3 1E+02 0.0035 27.2 5.5 43 15-59 13-64 (560)
79 3ztl_A Thioredoxin peroxidase; 25.3 1.3E+02 0.0043 22.8 5.5 40 19-58 69-109 (222)
80 4fu0_A D-alanine--D-alanine li 25.2 1.2E+02 0.0042 24.8 5.7 43 19-62 3-45 (357)
81 1jfu_A Thiol:disulfide interch 25.1 1.5E+02 0.0051 21.0 5.6 41 19-59 60-100 (186)
82 2bmx_A Alkyl hydroperoxidase C 25.0 1.3E+02 0.0045 21.9 5.4 41 19-59 45-86 (195)
83 3djh_A Macrophage migration in 24.8 26 0.00087 24.4 1.2 11 23-33 46-56 (114)
84 3foj_A Uncharacterized protein 24.8 1.5E+02 0.0051 19.3 5.8 51 4-60 40-90 (100)
85 3hcz_A Possible thiol-disulfid 24.5 81 0.0028 21.1 3.8 41 18-58 30-70 (148)
86 2lrn_A Thiol:disulfide interch 24.5 1.7E+02 0.0058 19.9 5.8 40 19-58 29-68 (152)
87 3qhp_A Type 1 capsular polysac 24.3 80 0.0027 21.8 3.9 25 21-46 2-26 (166)
88 3kcm_A Thioredoxin family prot 24.3 1.7E+02 0.0058 19.8 6.3 41 18-58 27-67 (154)
89 2rli_A SCO2 protein homolog, m 24.1 1.6E+02 0.0055 20.3 5.5 44 19-62 26-74 (171)
90 3en0_A Cyanophycinase; serine 23.9 1.9E+02 0.0064 23.7 6.5 38 19-59 26-65 (291)
91 1o73_A Tryparedoxin; electron 23.8 1.7E+02 0.0057 19.6 5.8 40 18-57 27-67 (144)
92 2p31_A CL683, glutathione pero 23.7 1.5E+02 0.005 21.3 5.3 41 19-59 49-89 (181)
93 2pn8_A Peroxiredoxin-4; thiore 23.5 1.3E+02 0.0043 22.7 5.1 40 19-58 48-88 (211)
94 1o8x_A Tryparedoxin, TRYX, TXN 23.4 1.8E+02 0.006 19.7 5.8 41 18-58 27-68 (146)
95 2qq6_A Mandelate racemase/muco 23.0 3.3E+02 0.011 22.7 9.8 112 26-156 183-304 (410)
96 2obi_A PHGPX, GPX-4, phospholi 23.0 1.5E+02 0.0052 21.1 5.3 41 19-59 47-87 (183)
97 2kwa_A Kinase A inhibitor; bac 22.7 1.6E+02 0.0056 19.8 5.1 41 21-61 16-57 (101)
98 2ggt_A SCO1 protein homolog, m 22.7 1.7E+02 0.0058 20.0 5.4 44 19-62 23-71 (164)
99 2lrt_A Uncharacterized protein 22.6 1.6E+02 0.0053 20.4 5.2 40 19-58 35-74 (152)
100 3eme_A Rhodanese-like domain p 22.5 1.7E+02 0.0057 19.1 5.4 51 4-60 40-90 (103)
101 3lor_A Thiol-disulfide isomera 22.4 1.6E+02 0.0055 20.0 5.2 42 19-60 30-72 (160)
102 4dlp_A Aminoacyl-tRNA syntheta 21.8 54 0.0019 28.8 3.0 37 22-59 26-71 (536)
103 3cmi_A Peroxiredoxin HYR1; thi 21.4 1.3E+02 0.0045 21.2 4.6 40 19-59 32-71 (171)
104 4evm_A Thioredoxin family prot 21.4 1.7E+02 0.0059 18.8 5.6 40 18-58 21-60 (138)
105 1we0_A Alkyl hydroperoxide red 21.2 1.3E+02 0.0045 21.6 4.7 41 19-59 31-72 (187)
106 2p5q_A Glutathione peroxidase 21.1 1.9E+02 0.0064 19.9 5.3 43 19-61 32-74 (170)
107 1ydh_A AT5G11950; structural g 20.9 1E+02 0.0035 24.2 4.1 31 19-49 8-38 (216)
108 2f9s_A Thiol-disulfide oxidore 20.6 1.8E+02 0.0062 19.6 5.1 41 18-58 25-65 (151)
109 2csx_A Methionyl-tRNA syntheta 20.5 1E+02 0.0034 26.7 4.4 29 31-60 18-52 (497)
110 1e4e_A Vancomycin/teicoplanin 20.3 1.8E+02 0.0061 23.4 5.7 43 19-62 3-45 (343)
No 1
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=100.00 E-value=9.2e-36 Score=237.28 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=108.1
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC--CeEEee
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD--FIMVDP 96 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~--~i~v~~ 96 (173)
|+++ ++|||||||||+||+.+++ |++.+ |+|+|+|+..+|. |++.+++++|++|+++|+++++ ++.|++
T Consensus 1 M~~i-gi~gGsFdPih~GHl~i~~-a~~~~--d~v~~~p~~~~~~-----k~~~~~~~~R~~m~~~a~~~~~~~~~~v~~ 71 (177)
T 3h05_A 1 MKKI-AIFGSAFNPPSLGHKSVIE-SLSHF--DLVLLEPSIAHAW-----GKNMLDYPIRCKLVDAFIKDMGLSNVQRSD 71 (177)
T ss_dssp CCEE-EEEEECCSSCCHHHHHHHT-TCTTS--SEEEEEECC------------CCCHHHHHHHHHHHHHHHCCTTEEECC
T ss_pred CcEE-EEEEeccchhhHHHHHHHH-HHHHC--CEEEEEECCCCCC-----CCCCCCHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3455 4679999999999999998 77766 9999999986654 3568999999999999999874 899999
Q ss_pred cccc--CCc-ccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCCchHHHHHHHHHH
Q 030661 97 WEAN--QSG-YQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCMSVSLCLIYLIFH 158 (173)
Q Consensus 97 ~E~~--~~~-~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~~~~~~~~~~~~ 158 (173)
+|.+ +++ +|||++||++|+++|| +|++.+|++|+ ++|+++|+++|+.|...+|.+.|-..+.
T Consensus 72 ~E~~l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~ 147 (177)
T 3h05_A 72 LEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEKVKIRSTDIRNALI 147 (177)
T ss_dssp HHHHHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHHSEEEECCCSSCCCHHHHHHHHH
T ss_pred hhhhcccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcccchhHHHHHHhCCEEEEcCCCCCcHHHHHHHHH
Confidence 9987 666 9999999999999998 79999999999 9999999999999977777777665554
No 2
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.98 E-value=2.3e-32 Score=226.71 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=113.3
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
++.+++|||||||+|+||+.++++|++.+++|+|+|+|+..+|+|. ...+++++|++|+++|+++.+++.|++||+
T Consensus 22 ~~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~K~----~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~ 97 (242)
T 1yum_A 22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRE----TPQVSAAQRLAMVERAVAGVERLTVDPREL 97 (242)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGGS----CTTCCHHHHHHHHHHHHTTCTTEEECCGGG
T ss_pred CceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCCCC----CCCCCHHHHHHHHHHHhcCCCeEEEeeeee
Confidence 3444567999999999999999999999999999999999888753 467999999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHc-C---------CcccCCccchH--HHhcCCccEEEEecC
Q 030661 100 NQSGYQRTLTVLSRVKNFL-I---------EAGLISTGKKQ--NYIFPPCSASVELSC 145 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~-p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~ 145 (173)
++++++||++||++++++| | +|++.+|++|+ ++|++.|+++|+.|.
T Consensus 98 ~~~~~sytvdtl~~l~~~~~p~~~~~fI~G~D~l~~l~~W~~~~~i~~~~~~vv~~R~ 155 (242)
T 1yum_A 98 QRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRP 155 (242)
T ss_dssp GSSSSCCHHHHHHHHHHHSCTTCEEEEEEEHHHHTTGGGSTTGGGSTTTCEEEEEECS
T ss_pred cCCCCCCHHHHHHHHHHHhCCCCcEEEEEehhHhhhhhhhcCHHHHHhhCcEEEEECC
Confidence 9999999999999999999 6 79999999999 999999999999998
No 3
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.97 E-value=1.6e-31 Score=212.57 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=112.6
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
++++ ++||||||+|+||+.+++.|.+.+++|+++|+|+..+|+|.. +..++.++|++|+++|+++.+++.|+++|+
T Consensus 2 ~~~~-v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~ 77 (189)
T 2h29_A 2 KKIV-LYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKH---HDFIDVQHRLTMIQMIIDELGFGDICDDEI 77 (189)
T ss_dssp EEEE-EEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCC---CSSCCCHHHHHHHHHHHHHHTCCEECCHHH
T ss_pred ceEE-EEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCCcC---CCCCCHHHHHHHHHHHHcCCCCEEEehHHh
Confidence 4554 579999999999999999999999999999999999888752 457899999999999999999999999999
Q ss_pred cCCcccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecC
Q 030661 100 NQSGYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSC 145 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~ 145 (173)
++++++||++||+++++.|| +|++.++++|+ ++|++.|+++|+.|.
T Consensus 78 ~~~~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~~~~W~~~~~i~~~~~~~v~~R~ 134 (189)
T 2h29_A 78 KRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRD 134 (189)
T ss_dssp HHCSBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGGGSTTHHHHHHHCEEEEECCS
T ss_pred cCCCCCCHHHHHHHHHHHCCCCcEEEEEecchhhhhccccCHHHHHhhCcEEEEECC
Confidence 99999999999999999998 68999999999 999999999999997
No 4
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.97 E-value=1.4e-30 Score=207.78 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=107.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
|+++ +++||||||+|+||+.+++.|.+.+++|+++|+|+..+|+|.. +..++.++|++|+++|+++.+++.|++||
T Consensus 6 m~~~-~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e 81 (194)
T 1kam_A 6 SKKI-GIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQN---EDYTDSFHRVEMLKLAIQSNPSFKLELVE 81 (194)
T ss_dssp CCEE-EEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEECCGG
T ss_pred CcEE-EEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCcCC---cCCCCHHHHHHHHHHHHcCCCCeEEeHHH
Confidence 4455 4579999999999999999999999999999999988887642 46899999999999999999999999999
Q ss_pred ccCCcccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecCC
Q 030661 99 ANQSGYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSCM 146 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~ 146 (173)
.++++++||++||++++.+|| .|++.+|++|+ ++|++.|+++|+.|..
T Consensus 82 ~~~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~W~~~e~i~~~~~~~v~~R~g 140 (194)
T 1kam_A 82 MEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQFIGVKRPG 140 (194)
T ss_dssp GSTTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCCCCHHHHHHHHHSEEEEEECSS
T ss_pred hcCCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhccccCHHHHHHhCcEEEEECCC
Confidence 999999999999999999987 78999999999 9999999999999963
No 5
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.97 E-value=1.2e-30 Score=211.10 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=112.9
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
++++++||||||+|+||+.++++|.+.+++|+|+|+|+..+|+|. +..++.++|++|+++++++.+++.|++||.+
T Consensus 3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~ 78 (213)
T 1k4m_A 3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRP----QPEANSVQRKHMLELAIADKPLFTLDERELK 78 (213)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSC----CCSSCHHHHHHHHHHHHTTCTTEEECCHHHH
T ss_pred eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHhccCCCEEEeHHHhc
Confidence 453567999999999999999999999999999999998888864 3589999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHc-C---------CcccCCccchH--HHhcCCccEEEEecCCc
Q 030661 101 QSGYQRTLTVLSRVKNFL-I---------EAGLISTGKKQ--NYIFPPCSASVELSCMS 147 (173)
Q Consensus 101 ~~~~syT~~TL~~lk~~~-p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~~~ 147 (173)
+++++||++|++++++++ | .|++.+|++|+ ++|++.|+++|+.|...
T Consensus 79 ~~~~s~t~~~l~~l~~~~~~~~~~~~i~G~D~~~~l~~W~~~~~i~~~~~~vv~~R~~~ 137 (213)
T 1k4m_A 79 RNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGY 137 (213)
T ss_dssp CSSCCCHHHHHHHHHHHHCTTSCEEEEEEHHHHHHGGGSTTHHHHHHHCEEEEECCTTC
T ss_pred CCCCCcHHHHHHHHHHHhCCCCcEEEEEehhhhhhhhccCCHHHHHhhCcEEEEECCCC
Confidence 999999999999999985 5 68899999999 99999999999999875
No 6
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.96 E-value=8.3e-31 Score=218.06 Aligned_cols=124 Identities=35% Similarity=0.418 Sum_probs=109.0
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCc------EEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeE
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEG------YCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIM 93 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~------v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~ 93 (173)
.+++++|||||||||+||+.+++.|.+.++.|+ ++|+|+..+|+ |+..++.++|++|+++|++++++|.
T Consensus 5 ~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~-----k~~~~~~~~R~~m~~~ai~~~~~~~ 79 (252)
T 1nup_A 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYG-----KKDLAASHHRVAMARLALQTSDWIR 79 (252)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCS-----SSCCCCHHHHHHHHHHHGGGCSSEE
T ss_pred CceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCccc-----CCCCCCHHHHHHHHHHHhcCCCceE
Confidence 345667899999999999999999999998774 46666665554 3468999999999999999999999
Q ss_pred EeeccccCCcccchHHHHHHHHHHc------------------------------CCcccCCcc---chH----HHhcCC
Q 030661 94 VDPWEANQSGYQRTLTVLSRVKNFL------------------------------IEAGLISTG---KKQ----NYIFPP 136 (173)
Q Consensus 94 v~~~E~~~~~~syT~~TL~~lk~~~------------------------------p~D~l~~l~---~W~----e~L~~~ 136 (173)
|++||+.+++++||++||++++++| ++|++.+|+ +|+ ++|++.
T Consensus 80 v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~fiiGaD~l~~l~~p~~W~~~~~~~i~~~ 159 (252)
T 1nup_A 80 VDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEK 159 (252)
T ss_dssp ECCHHHHSSSCCCHHHHHHHHHHHHC--------------------CCCEEEEEEEHHHHHHTTSTTTSCHHHHHHHHHH
T ss_pred eehHHhcCCCCCCHHHHHHHHHHHHhhccccccccccccccccCCCCCceEEEEEecchHhHCCCcCccCcchHHHHHhh
Confidence 9999999999999999999999988 378999999 797 679999
Q ss_pred ccEEEEecCCch
Q 030661 137 CSASVELSCMSV 148 (173)
Q Consensus 137 ~~~vV~~r~~~~ 148 (173)
|+++|+.|+.+.
T Consensus 160 ~~lvv~~R~g~~ 171 (252)
T 1nup_A 160 FGLVCVGRVSHD 171 (252)
T ss_dssp TCEEEECCTTCC
T ss_pred CcEEEEECCCCC
Confidence 999999998765
No 7
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.96 E-value=8.7e-30 Score=201.26 Aligned_cols=123 Identities=16% Similarity=0.177 Sum_probs=111.3
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
|+++ +++||||||+|+||+.++++|.+.+++|+|+|+|+..+|+|.. +..++.++|++|+++++++.+++.|++||
T Consensus 1 m~~i-~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~~~v~v~~~e 76 (189)
T 2qtr_A 1 MRKI-GIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLELATEAEEHFSICLEE 76 (189)
T ss_dssp CCEE-EEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCTT---SCCCCHHHHHHHHHHHHTTCTTEEECCTG
T ss_pred CCeE-EEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCccC---CCCCCHHHHHHHHHHHhCCCCCEEEehHH
Confidence 3455 4679999999999999999999999999999999988888752 46899999999999999999999999999
Q ss_pred ccCCcccchHHHHHHHHHHcC---------CcccCCccchH--HHhcCCccEEEEecC
Q 030661 99 ANQSGYQRTLTVLSRVKNFLI---------EAGLISTGKKQ--NYIFPPCSASVELSC 145 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p---------~D~l~~l~~W~--e~L~~~~~~vV~~r~ 145 (173)
.++.+++||++|+++++.++| .|++.++++|+ ++|++.++++|+.|.
T Consensus 77 ~~~~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~w~~~~~l~~~~~~~v~~r~ 134 (189)
T 2qtr_A 77 LSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARP 134 (189)
T ss_dssp GGSCSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGGSTTHHHHTTTCEEEEECCT
T ss_pred hcCCCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhhhhccCCHHHHHHhCCEEEEECC
Confidence 999999999999999999997 58889999999 999999999999885
No 8
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.96 E-value=3.1e-30 Score=218.16 Aligned_cols=129 Identities=36% Similarity=0.435 Sum_probs=109.5
Q ss_pred ccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCc---E---EEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 15 KTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEG---Y---CVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 15 ~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~---v---~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
+++.+.+.+++|||||||||+||+.+++.|++.+++|+ | +|+|+..+|+ |+..+++++|++|+++|+++
T Consensus 2 ~~~~~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~-----K~~l~s~~~R~~ml~~ai~~ 76 (279)
T 1kqn_A 2 ENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYK-----KKGLIPAYHRVIMAELATKN 76 (279)
T ss_dssp ----CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGC-----CTTCCCHHHHHHHHHHHTTT
T ss_pred CCCCCCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCcc-----ccCCCCHHHHHHHHHHHhcC
Confidence 35667777888999999999999999999999998775 5 5566655554 45689999999999999999
Q ss_pred CCCeEEeeccccCCcccchHHHHHHHHHHc--------------------------------------C-----------
Q 030661 89 SDFIMVDPWEANQSGYQRTLTVLSRVKNFL--------------------------------------I----------- 119 (173)
Q Consensus 89 ~~~i~v~~~E~~~~~~syT~~TL~~lk~~~--------------------------------------p----------- 119 (173)
.+++.|++||.++.+++||++||++|+++| |
T Consensus 77 ~~~~~v~~~E~~~~~~syTidtL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~G 156 (279)
T 1kqn_A 77 SKWVEVDTWESLQKEWKETLKVLRHHQEKLEASDCDHQQNSPTLERPGRKRKWTETQDSSQKKSLEPKTKAVPKVKLLCG 156 (279)
T ss_dssp CSSEEECCTGGGCSSCCCHHHHHHHHHHHHTC--------------------------------------CCCEEEEEEE
T ss_pred CCcEEEeccccccCCCCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 999999999999999999999999999988 3
Q ss_pred CcccCCcc---chH----HHhcCCccEEEEecCCch
Q 030661 120 EAGLISTG---KKQ----NYIFPPCSASVELSCMSV 148 (173)
Q Consensus 120 ~D~l~~l~---~W~----e~L~~~~~~vV~~r~~~~ 148 (173)
+|++.+|+ +|+ ++|++.|+|+|+.|.-..
T Consensus 157 aD~l~~~~~p~~W~~~~~e~il~~~~lvv~~R~g~~ 192 (279)
T 1kqn_A 157 ADLLESFAVPNLWKSEDITQIVANYGLICVTRAGND 192 (279)
T ss_dssp HHHHHHTTSTTTSCHHHHHHHHHHTCEEEEESCHHH
T ss_pred hhhHhhCcCccccCcchHHHHHhhCcEEEEeCCCCC
Confidence 57888898 797 699999999999998643
No 9
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.90 E-value=2e-23 Score=165.00 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=77.1
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccc
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEA 99 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~ 99 (173)
++.+++|||||||+|+||+.++++|++.+ |+|+|+|+. +|+ |+..++.++|++|+++|+++.+++.|++||
T Consensus 2 ~~ki~i~~GsFDPiH~GHl~i~~~a~~~~--d~viv~v~~-~p~-----K~~~~~~~~R~~ml~~a~~~~~~v~v~~~e- 72 (168)
T 3f3m_A 2 EHTIAVIPGSFDPITYGHLDIIERSTDRF--DEIHVCVLK-NSK-----KEGTFSLEERMDLIEQSVKHLPNVKVHQFS- 72 (168)
T ss_dssp CCCEEEEEECCTTCCHHHHHHHHHHGGGS--SEEEEEECC-----------CCSCHHHHHHHHHHHTTTCTTEEEEECC-
T ss_pred CceEEEEEEEcCcCCHHHHHHHHHHHHhC--CEEEEEEcC-CCC-----CCCCCCHHHHHHhHHHHhcCCCCEEEEEcC-
Confidence 33455679999999999999999999998 899999985 564 357899999999999999999999999998
Q ss_pred cCCcccchHHHHHHHHHHc---CCcccCCc
Q 030661 100 NQSGYQRTLTVLSRVKNFL---IEAGLIST 126 (173)
Q Consensus 100 ~~~~~syT~~TL~~lk~~~---p~D~l~~l 126 (173)
+||++|+++++..+ +.|++.++
T Consensus 73 -----~~tvd~~~~l~~~~~I~G~d~~~d~ 97 (168)
T 3f3m_A 73 -----GLLVDYCEQVGAKTIIRGLRAVSDF 97 (168)
T ss_dssp -----SCHHHHHHHHTCCEEEEEECTTCCH
T ss_pred -----CCHHHHHHHcCCCEEEEcCCchhhh
Confidence 39999999987765 36777663
No 10
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.89 E-value=3.4e-23 Score=163.39 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=79.3
Q ss_pred EEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccC
Q 030661 22 VVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQ 101 (173)
Q Consensus 22 ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~ 101 (173)
.+++|||||||+|+||+.++++|++.+ |+|+|+|+..++ |++.++.++|++|+++|+++.+++.|+++|
T Consensus 13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~--D~viv~v~~~~~------kk~~~~~~~R~~ml~~a~~~~~~v~v~~~e--- 81 (173)
T 1vlh_A 13 MKAVYPGSFDPITLGHVDIIKRALSIF--DELVVLVTENPR------KKCMFTLEERKKLIEEVLSDLDGVKVDVHH--- 81 (173)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEECCTT------CCCSSCHHHHHHHHHHHTTTCTTEEEEEEC---
T ss_pred eEEEEEEEECcCcHHHHHHHHHHHHHC--CEEEEEEeCCCC------CCCCCCHHHHHHHHHHHhcCCCCEEEecCc---
Confidence 356789999999999999999999998 999999988533 347899999999999999999999999998
Q ss_pred CcccchHHHHHHHHHHcCCcccCCccchH
Q 030661 102 SGYQRTLTVLSRVKNFLIEAGLISTGKKQ 130 (173)
Q Consensus 102 ~~~syT~~TL~~lk~~~p~D~l~~l~~W~ 130 (173)
+ ||++|+++++..+ -+..+++|+
T Consensus 82 -~--~tvd~l~~l~~~~---~i~gl~~w~ 104 (173)
T 1vlh_A 82 -G--LLVDYLKKHGIKV---LVRGLRAVT 104 (173)
T ss_dssp -S--CHHHHHHHHTCCE---EEEEECTTS
T ss_pred -c--hHHHHHHHhCCCe---EEeCCCccc
Confidence 2 9999999987665 335667776
No 11
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.87 E-value=9.2e-22 Score=156.98 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEee
Q 030661 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDP 96 (173)
Q Consensus 17 ~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~ 96 (173)
+.+++++ +|||||||+|+||+.++++|++.+ |+|+|+|+. +|. |++.++.++|++|+++++++.++++|++
T Consensus 18 ~~~mki~-i~~GsFDPiH~GHl~ii~~A~~~~--D~Viv~v~~-np~-----K~~~~s~eeR~~mv~~a~~~~~~v~V~~ 88 (177)
T 3nbk_A 18 GSHMTGA-VCPGSFDPVTLGHVDIFERAAAQF--DEVVVAILV-NPA-----KTGMFDLDERIAMVKESTTHLPNLRVQV 88 (177)
T ss_dssp --CCCEE-EEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECC-CTT-----SCCSSCHHHHHHHHHHHCTTCTTEEEEE
T ss_pred CCCCEEE-EEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEEcC-CCC-----CCCCCCHHHHHHHHHHHhCCCCCEEEEe
Confidence 3445665 579999999999999999999998 999999984 564 4578999999999999999999999999
Q ss_pred ccccCCcccchHHHHHHHHHHcCCcccCCccchH---------HHhcCCccEEEEec-----CCchHHHHHHHH
Q 030661 97 WEANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---------NYIFPPCSASVELS-----CMSVSLCLIYLI 156 (173)
Q Consensus 97 ~E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---------e~L~~~~~~vV~~r-----~~~~~~~~~~~~ 156 (173)
|| .||+++++.+...+=-=.+.+...|. ..+ ..+..|.+.. ..|+|.+++...
T Consensus 89 ~e------~l~vd~~~~~~a~~ivrGlr~~~Dfeye~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~ 155 (177)
T 3nbk_A 89 GH------GLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAM 155 (177)
T ss_dssp CC------SCHHHHHHHTTCCEEEEEECTTCCHHHHHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHH
T ss_pred cC------chHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHH
Confidence 98 49999988644322101122333443 235 5666666542 356666666543
No 12
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.86 E-value=1.6e-21 Score=154.46 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=70.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEE-eec
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV-DPW 97 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v-~~~ 97 (173)
|++++ +|||||||+|+||+.++++|++.+ |+|+|+|+ .+|+ |++.++.++|++|+++|+++.+++.| +++
T Consensus 1 Mm~i~-i~~GsFDPiH~GHl~i~~~a~~~~--D~viv~v~-~~~~-----K~~~~~~~~R~~ml~~a~~~~~~v~v~~~~ 71 (171)
T 3nd5_A 1 MRKIA-LFPGSFDPMTNGHLNLIERSAKLF--DEVIIGVF-INTS-----KQTLFTPEEKKYLIEEATKEMPNVRVIMQE 71 (171)
T ss_dssp CCCEE-EEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEE-C-----------CCCHHHHHHHHHHHHTTCTTEEEEEEC
T ss_pred CCeEE-EEEEEccccCHHHHHHHHHHHHHC--CCeEEEEe-cCCC-----CCCCCCHHHHHHHHHHHHccCCCEEEeeCC
Confidence 45665 579999999999999999999998 89999985 4564 35789999999999999999999999 999
Q ss_pred cccCCcccchHHHHHHHHHHc
Q 030661 98 EANQSGYQRTLTVLSRVKNFL 118 (173)
Q Consensus 98 E~~~~~~syT~~TL~~lk~~~ 118 (173)
| +||++|+++++..+
T Consensus 72 e------~~tvd~~~~l~~~~ 86 (171)
T 3nd5_A 72 T------QLTVESAKSLGANF 86 (171)
T ss_dssp S------SCHHHHHHHHTCCE
T ss_pred C------CcHHHHHHHCCCCE
Confidence 8 69999999886554
No 13
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.84 E-value=1.3e-20 Score=144.43 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=74.7
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCC
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQS 102 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~ 102 (173)
++++||||||+|+||+.++++|.+.+ |+++++|+. +|+| +..+++++|++|+++|+.+.+++.|+++|
T Consensus 3 i~i~~GsFDpvH~GH~~l~~~a~~~~--d~v~v~~~~-~p~k-----~~~~~~~~R~~ml~~a~~~~~~v~v~~~~---- 70 (158)
T 1qjc_A 3 RAIYPGTFDPITNGHIDIVTRATQMF--DHVILAIAA-SPSK-----KPMFTLEERVALAQQATAHLGNVEVVGFS---- 70 (158)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEES-CCSS-----CCSSCHHHHHHHHHHHTTTCTTEEEEEEC----
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhC--CEEEEEECC-CCCC-----CCCCCHHHHHHHHHHHHhcCCCeEEcccc----
Confidence 34679999999999999999999987 899999987 5654 46799999999999999999999999998
Q ss_pred cccchHHHHHHHHHHc---CCcccCCcc
Q 030661 103 GYQRTLTVLSRVKNFL---IEAGLISTG 127 (173)
Q Consensus 103 ~~syT~~TL~~lk~~~---p~D~l~~l~ 127 (173)
+||++||++++..+ +.|.+.++.
T Consensus 71 --~~~~~~l~~l~~~~~v~G~d~~~~~~ 96 (158)
T 1qjc_A 71 --DLMANFARNQHATVLIRGLRAVADFE 96 (158)
T ss_dssp --SCHHHHHHHTTCCEEEEECCTTCCHH
T ss_pred --hHHHHHHHHcCCCEEEEeccchhhhH
Confidence 38999987765333 155554444
No 14
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.83 E-value=3.5e-20 Score=144.25 Aligned_cols=92 Identities=21% Similarity=0.191 Sum_probs=75.6
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
|++++ ++||||||+|+||+.++++|.+.+ |+++|+|+. +|.| +..++.++|++|+++++++.+++.|+++|
T Consensus 1 m~~i~-i~~GsFDpvH~GH~~li~~a~~~~--d~v~v~~~~-~p~k-----~~l~~~~~R~~ml~~a~~~~~~v~v~~~e 71 (169)
T 1o6b_A 1 MASIA-VCPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVLN-NSSK-----KPLFSVEERCELLREVTKDIPNITVETSQ 71 (169)
T ss_dssp -CCEE-EEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECC-CCSS-----CCSSCHHHHHHHHHHHHTTCTTEEEEECS
T ss_pred CCcEE-EEEEeeCCCCHHHHHHHHHHHHhC--CEEEEEECC-CCcc-----CCCCCHHHHHHHHHHHHhcCCCEEEcccc
Confidence 34555 579999999999999999999998 899999884 5654 46899999999999999999999999998
Q ss_pred ccCCcccchHHHHHHHHHHc---CCcccCC
Q 030661 99 ANQSGYQRTLTVLSRVKNFL---IEAGLIS 125 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~---p~D~l~~ 125 (173)
+||++|++.++..+ ..|.+.+
T Consensus 72 ------~~~~~~l~~l~~~~~i~G~d~~~~ 95 (169)
T 1o6b_A 72 ------GLLIDYARRKNAKAILRGLRAVSD 95 (169)
T ss_dssp ------SCHHHHHHHTTCSEEEEEECSGGG
T ss_pred ------hHHHHHHHHcCCCEEEEcCccccc
Confidence 69999998776443 2565543
No 15
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.83 E-value=3.5e-20 Score=142.49 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=69.5
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
+++||||||+|+||+.++++|.+.+ |+++++|+ .+|+|.. ...++.++|++|+++++++.+++.|+++| +
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~~~-~~p~k~~---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e----~ 72 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLF--EKVTVAVL-ENPSKRG---QYLFSAEERLAIIREATAHLANVEAATFS----G 72 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEE-CC--------CCSSCHHHHHHHHHHHTTTCTTEEEEEEC----S
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHC--CEEEEEEc-CCCCCCC---CCCCCHHHHHHHHHHHhcCCCCEEEEecC----c
Confidence 5679999999999999999999987 89999998 6676531 36899999999999999999999999998 2
Q ss_pred ccchHHHHHHHHHHc
Q 030661 104 YQRTLTVLSRVKNFL 118 (173)
Q Consensus 104 ~syT~~TL~~lk~~~ 118 (173)
||++|+++++..+
T Consensus 73 --~~~~~l~~l~~~~ 85 (160)
T 1od6_A 73 --LLVDFVRRVGAQA 85 (160)
T ss_dssp --CHHHHHHHTTCSE
T ss_pred --hHHHHHHHcCCCE
Confidence 9999998776554
No 16
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.82 E-value=2.6e-20 Score=146.30 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=82.9
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
+|++++ +|||||||+|+||+.++++|++.+ |+|+|+++ .+|. |++.++.++|++|+++++++ +++.|+.|
T Consensus 3 ~mm~i~-i~~GsFDPiH~GHl~li~~A~~~~--d~viv~v~-~~~~-----K~~~~~~~~R~~m~~~~~~~-~~v~V~~~ 72 (162)
T 4f3r_A 3 AMKPIA-IYPGTFDPLTNGHVDIIERALPLF--NKIIVACA-PTSR-----KDPHLKLEERVNLIADVLTD-ERVEVLPL 72 (162)
T ss_dssp --CCEE-EEEECCTTCCHHHHHHHHHHGGGC--SEEEEEEC-CC-----------CCHHHHHHHHHHHCCC-TTEEEEEC
T ss_pred CceEEE-EEEEEcCCCCHHHHHHHHHHHHHC--CcEEEEEe-cCCc-----cCCCCCHHHHHHHHHHhhCC-CCEEEEec
Confidence 456665 569999999999999999999998 89999888 4564 45789999999999999998 99999998
Q ss_pred cccCCcccchHHHHHHHHHHc---CCcccCCccchH------HHhcCCccEEEEecCC-----chHHHHHHHHH
Q 030661 98 EANQSGYQRTLTVLSRVKNFL---IEAGLISTGKKQ------NYIFPPCSASVELSCM-----SVSLCLIYLIF 157 (173)
Q Consensus 98 E~~~~~~syT~~TL~~lk~~~---p~D~l~~l~~W~------e~L~~~~~~vV~~r~~-----~~~~~~~~~~~ 157 (173)
| .+++++++.+...+ +.|++.+++.+. +.+-..+..+.+.+.. |||.++....+
T Consensus 73 ~------~l~~~~~~~~~~~~~v~G~r~~~Df~~e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~ 140 (162)
T 4f3r_A 73 T------GLLVDFAKTHQANFILRGLRAVSDFDYEFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTL 140 (162)
T ss_dssp C------SCHHHHHHHTTCCEEEEEECSHHHHHHHHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHT
T ss_pred c------chHHHHHHHcCCCEEEECCCchhhhhhHHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHc
Confidence 7 26677665432111 033333333322 2454567777766653 56655555443
No 17
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.81 E-value=2.2e-19 Score=144.08 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred hhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhc
Q 030661 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACK 87 (173)
Q Consensus 8 ~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~ 87 (173)
++|-+|++.+.|+++++ +||||||+|+||+.++++|++.+ |+++++++. +| .|+.+++.++|++|++.+++
T Consensus 10 ~~~~~~~~~~~~mki~v-~~GsFDpiH~GHl~li~~A~~~~--d~viv~v~~-~p-----~K~~l~s~eeR~~ml~~~~~ 80 (187)
T 3k9w_A 10 GTLEAQTQGPGSMVVAV-YPGTFDPLTRGHEDLVRRASSIF--DTLVVGVAD-SR-----AKKPFFSLEERLKIANEVLG 80 (187)
T ss_dssp ----------CCCCEEE-EEECCTTCCHHHHHHHHHHHHHS--SEEEEEEEC-CG-----GGCCSSCHHHHHHHHHHHHT
T ss_pred chhhhhhcccCCcEEEE-EEEeCCcCcHHHHHHHHHHHHHC--CcEEEEEec-CC-----ccCCCCCHHHHHHHHHHHhc
Confidence 56788999888888765 69999999999999999999997 889888764 34 34678999999999999999
Q ss_pred CCCCeEEeeccccCCcccchHHHHHHHHHHc---CCcccCCcc------chHHHhcCCccEEEEecC-----CchHHHHH
Q 030661 88 SSDFIMVDPWEANQSGYQRTLTVLSRVKNFL---IEAGLISTG------KKQNYIFPPCSASVELSC-----MSVSLCLI 153 (173)
Q Consensus 88 ~~~~i~v~~~E~~~~~~syT~~TL~~lk~~~---p~D~l~~l~------~W~e~L~~~~~~vV~~r~-----~~~~~~~~ 153 (173)
+.+++.|.+|+ .++.++++.++..+ +.|++.+++ .+.+.+-..+..+.+.+. .|+|.+|.
T Consensus 81 ~v~~v~v~~f~------~~~~d~l~~l~~~~iv~G~r~~~Df~~E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe 154 (187)
T 3k9w_A 81 HYPNVKVMGFT------GLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVRE 154 (187)
T ss_dssp TCTTEEEEEES------SCHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHH
T ss_pred cCCcEEEEech------hhHHHHHHHcCCCEEEECCCcccccchHHHHHHHHHHhCCCCcEEEEecccccccccHHHHHH
Confidence 99999999986 47888776553322 144444433 011344445666666543 46666665
Q ss_pred HHH
Q 030661 154 YLI 156 (173)
Q Consensus 154 ~~~ 156 (173)
...
T Consensus 155 ~~~ 157 (187)
T 3k9w_A 155 IAQ 157 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 18
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.76 E-value=2.1e-18 Score=134.66 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=56.3
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEE-ecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC-CeEEe
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD-FIMVD 95 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vv-p~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~-~i~v~ 95 (173)
+++|||||||+|+||+.++++|.+.+ |+|+|+ |+..+|++. +..++.++|++|+++++++.+ ++.+.
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~~~----~~~~~~~~R~~m~~~~~~~~~~~v~v~ 70 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQKSHTL----ENPFTAGERILMITQSLKDYDLTYYPI 70 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSS----SCCSCHHHHHHHHHHHHTTSSCEEEEE
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC--CeEEEEEcCCCCCCCC----CCCCCHHHHHHHHHHHHhcCCCceEEE
Confidence 35789999999999999999999985 899885 588777763 456799999999999999987 66543
No 19
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.75 E-value=2.5e-18 Score=134.45 Aligned_cols=119 Identities=18% Similarity=0.158 Sum_probs=83.9
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
|++++ +|||||||+|+||+.++++|++.+ |+|+|+++ .+|+ |++.++.++|++|++.++++.+++.|+.|+
T Consensus 1 Mm~i~-i~~GsFDPiH~GHl~ii~~A~~~~--D~viv~v~-~~~~-----K~~~~~~~eR~~ml~~a~~~~~~v~v~~~~ 71 (157)
T 3nv7_A 1 MQKVG-IYPGTFDPVTNGHIDIIHRSSELF--EKLIVAVA-HSSA-----KNPMFSLDERLKMIQLATKSFKNVECVAFE 71 (157)
T ss_dssp --CEE-EEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEE-CCGG-----GCCSSCHHHHHHHHHHHHTTSTTEEEEEEC
T ss_pred CCEEE-EEEEEcCCCCHHHHHHHHHHHHhC--CceEEEEc-cCCC-----CCCCCCHHHHHHHHHHHhcCCCcEEEEecC
Confidence 45655 579999999999999999999997 89987764 3453 467899999999999999999999998885
Q ss_pred ccCCcccchHHHHHHHHHHcCCccc----CCccchH---------HHhcCCccEEEEecC-----CchHHHHHHHH
Q 030661 99 ANQSGYQRTLTVLSRVKNFLIEAGL----ISTGKKQ---------NYIFPPCSASVELSC-----MSVSLCLIYLI 156 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p~D~l----~~l~~W~---------e~L~~~~~~vV~~r~-----~~~~~~~~~~~ 156 (173)
. .+++ .+++. ..|.+ .+...|. ..|...+..+.+.+. .|+|.++....
T Consensus 72 ~------l~~~---~~~~~-~~~~ivrG~r~~~D~~ye~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~ 137 (157)
T 3nv7_A 72 G------LLAY---LAKEY-HCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIA 137 (157)
T ss_dssp S------CHHH---HHHHT-TCCCBCCCCSCCCCHHHHHHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHH
T ss_pred c------hHHH---HHHHc-CCCEEEECCcccchhhhhHHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHH
Confidence 2 2333 33333 34543 3347776 245556666665553 55666665443
No 20
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.71 E-value=1.4e-17 Score=131.42 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred EEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEE-ecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC----CeEEeec
Q 030661 23 VLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI-GGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD----FIMVDPW 97 (173)
Q Consensus 23 i~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vv-p~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~----~i~v~~~ 97 (173)
++++||||||+|+||+.++++|.+.+ |+++++ |+..+|++. +..++.++|++|++.++.+.+ ++.|..+
T Consensus 5 ~~i~~G~Fdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~~~----~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~ 78 (181)
T 1ej2_A 5 RGLLVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSHSI----RDPFTAGERVMMLTKALSENGIPASRYYIIPV 78 (181)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCSSS----SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred EEEEEEEcCCcCHHHHHHHHHHHHhC--CeeEEEECCCCCCcCC----CCCCCHHHHHHHHHHHHhhCCCCCCcEEEEec
Confidence 45679999999999999999999985 888885 477777763 457899999999999998764 6666655
Q ss_pred cc
Q 030661 98 EA 99 (173)
Q Consensus 98 E~ 99 (173)
+.
T Consensus 79 d~ 80 (181)
T 1ej2_A 79 QD 80 (181)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 21
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.71 E-value=6.3e-18 Score=125.93 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=87.3
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC--CCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS--PVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~--P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
+++ ++||+|||+|+||+.++++|.+.+ |+++++++..+ |++ .+....+.++|++|++ +++..+++.+
T Consensus 2 ~~~-~~~G~FDp~H~GH~~li~~a~~~~--d~~~v~v~~~~~~~~~---~~~~l~~~~eR~~~l~-~~~~~d~v~~---- 70 (129)
T 1coz_A 2 KKV-ITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNLQK---QKKAYHSYEHRKLILE-TIRYVDEVIP---- 70 (129)
T ss_dssp CEE-EEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHHHH---TCCCSSCHHHHHHHHT-TBTTCCEEEE----
T ss_pred cEE-EEEEeCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHhcC---CCCCCCCHHHHHHHHH-hcCCCCEEEe----
Confidence 444 569999999999999999999987 88989988743 222 2356899999999999 7776666543
Q ss_pred ccCCcccchHHHHHHHHHHcCCcccCCccchH---HHhcCCccEEEEecCCchHHHHHHHH
Q 030661 99 ANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---NYIFPPCSASVELSCMSVSLCLIYLI 156 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---e~L~~~~~~vV~~r~~~~~~~~~~~~ 156 (173)
+.+|+ ++++.+++ +..|.+.....|. +.|.+.+.++++++...+|+++|-..
T Consensus 71 ----~~~~~-~~~~~l~~-~~~~~iv~G~D~~~~~~~L~~~~~v~~~~~~~~iSST~IR~~ 125 (129)
T 1coz_A 71 ----EKNWE-QKKQDIID-HNIDVFVMGDDWEGKFDFLKDQCEVVYLPRTEGISTTKIKEE 125 (129)
T ss_dssp ----ECCST-THHHHHHH-TTCSEEEEEGGGTTTTGGGTTTSEEEEECCCTTCCHHHHHHT
T ss_pred ----CCCHH-HHHHHHHH-hCCcEEEECCCCCCcHHHHHhCCeEEEcCCCCCcCHHHHHHH
Confidence 24455 66777654 3444554445564 67888899999999877777776544
No 22
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.71 E-value=9.4e-18 Score=125.59 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=79.8
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecccc
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEAN 100 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~ 100 (173)
+++ +++|+|||+|+||+.++++|.+.+ |+++++++..++.. .+.+..+.+.++|++|++ ++...+++.+
T Consensus 2 ~~~-~~~G~FDp~H~GH~~li~~a~~~~--~~~~v~v~~~~~~~-~~~~~~l~~~~eR~~~l~-~~~~~d~v~~------ 70 (132)
T 2b7l_A 2 KRV-ITYGTYDLLHYGHIELLRRAREMG--DYLIVALSTDEFNQ-IKHKKSYYDYEQRKMMLE-SIRYVDLVIP------ 70 (132)
T ss_dssp CEE-EEEECCCSCCHHHHHHHHHHHHTS--SEEEEEEECHHHHH-HTTCCCSSCHHHHHHHHH-TBTTCCEEEE------
T ss_pred eEE-EEeeecCcCCHHHHHHHHHHHHhC--CcEEEEEECCHHHh-ccCCCCCCCHHHHHHHHH-hcCCCCEEEE------
Confidence 444 569999999999999999999987 67888888754211 112356899999999999 7876676655
Q ss_pred CCcccchHHHHHHHHHHcCCcccCCccchH---HHhcCCccEEEEecCCchHHHHHHHHH
Q 030661 101 QSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---NYIFPPCSASVELSCMSVSLCLIYLIF 157 (173)
Q Consensus 101 ~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---e~L~~~~~~vV~~r~~~~~~~~~~~~~ 157 (173)
+.+|+ ++++.+++..+ |.+.....|. +.|.+.+.++++++...+|+++|-..+
T Consensus 71 --~~~~~-~~~~~~~~~~~-~~iv~G~D~~~~~~~L~~~~~v~~i~~~~~iSST~IR~~i 126 (132)
T 2b7l_A 71 --EKGWG-QKEDDVEKFDV-DVFVMGHDWEGEFDFLKDKCEVIYLKRTEGISTTKIKQEL 126 (132)
T ss_dssp --ECCGG-GHHHHHHHTTC-CEEEECGGGTTTTGGGTTTSEEEECSSCC-----------
T ss_pred --CCChH-HHHHHHHHcCC-CEEEECCCCcCcHHHHHhCCEEEEECCCCCcCHHHHHHHH
Confidence 45666 77777766554 3333333333 566677889999887777777776544
No 23
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.70 E-value=9.4e-18 Score=129.79 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=60.3
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHh-cCC-CCeEEeeccc
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLAC-KSS-DFIMVDPWEA 99 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai-~~~-~~i~v~~~E~ 99 (173)
++|||||||+|+||+.++++|++. ++|+|+|+|+..+|++.. ++...++++|++|+++|+ ++. +.+.+...+-
T Consensus 3 ~i~gGtFDPiH~GHl~l~~~a~~~-~~d~viv~v~~~~~~~k~--~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D 77 (148)
T 3do8_A 3 VALGGTFEPLHEGHKKLIDVAIKL-GGRDITIGVTSDRMARAR--IRSVLPFAIRAENVKRYVMRKYGFEPEIVKITN 77 (148)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHHH-HTTCEEEEEECHHHHHHH--SCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECS
T ss_pred EEEEeeCCCCCHHHHHHHHHHHHh-CCCEEEEEECCCcccccc--CCCCCCHHHHHHHHHHHHhcccCCcEEEEeecC
Confidence 357999999999999999999998 679999999998886321 257899999999999999 764 4677766653
No 24
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.69 E-value=3.3e-17 Score=139.23 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=68.7
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC----CCeEE
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS----DFIMV 94 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~----~~i~v 94 (173)
|+++ ++|||||||+|+||+.++++|++.+ |+++|+++..+|.+. |+..+++++|++|+++++++. +++.+
T Consensus 6 ~~~~-~i~~GtFdP~h~GHl~~~~~a~~~~--d~~~~~v~~~~~~~~---~~~~~~~~~R~~m~~~~~~~~~~~~~~~~~ 79 (352)
T 2qjt_B 6 MYDI-SVFIGRFQPFHKGHLHNIIIALQNS--KKVIINIGSCFNTPN---IKNPFSFEQRKQMIESDLQVAGIDLDTVVI 79 (352)
T ss_dssp CEEE-EEEEECCTTCCHHHHHHHHHHHHSE--EEEEEEEEEESCCCC---SSSCSCHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred cccE-EEEEEecCCCChHHHHHHHHHHHhC--CcEEEEECCCCCCcc---cCCCCCHHHHHHHHHHHhccccCccceEEE
Confidence 4455 4679999999999999999999997 898888888776554 466799999999999999754 57777
Q ss_pred eeccccCCcccchHHHHHH
Q 030661 95 DPWEANQSGYQRTLTVLSR 113 (173)
Q Consensus 95 ~~~E~~~~~~syT~~TL~~ 113 (173)
..++....+....++.++.
T Consensus 80 ~~~~d~~~~~~~~~~~~~~ 98 (352)
T 2qjt_B 80 EPLADYFYQEQKWQDELRK 98 (352)
T ss_dssp EEEECCTTCHHHHHHHHHH
T ss_pred EEcCCCcCChHHHHHHHHH
Confidence 7766543445556665443
No 25
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.68 E-value=2.2e-17 Score=142.11 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=66.6
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCC-----CcccccCCCCCHHHHHHHHHHHhcCCCC-eEE
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPV-----NDAYKKRGLISAEHRINLCNLACKSSDF-IMV 94 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~-----k~~~~K~~~~s~~~Rl~Ml~lai~~~~~-i~v 94 (173)
++ ++|||||||+|+||+.++++|++.+ |+|+|+|+..+|+ |.... +..++.++|++|+++++++.++ ++|
T Consensus 3 ~~-~i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~-~~~~~~~~R~~m~~~~~~~~~~~~~v 78 (365)
T 1lw7_A 3 KV-GVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKM-KRMPTVQDRLRWMQQIFKYQKNQIFI 78 (365)
T ss_dssp CE-EEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTC-SSCCCHHHHHHHHHHHTSTTTTTEEE
T ss_pred cE-EEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCCcccccccccccc-CCCCCHHHHHHHHHHHhhcCCCcEEE
Confidence 44 4579999999999999999999986 9999999988775 22101 3359999999999999999998 999
Q ss_pred eeccccCCcccc
Q 030661 95 DPWEANQSGYQR 106 (173)
Q Consensus 95 ~~~E~~~~~~sy 106 (173)
+.+|.. ..++|
T Consensus 79 ~~~~~~-~~~~y 89 (365)
T 1lw7_A 79 HHLVED-GIPSY 89 (365)
T ss_dssp EEEECS-SSCCT
T ss_pred EEeccC-CCCCC
Confidence 999875 44553
No 26
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.68 E-value=8.8e-17 Score=141.93 Aligned_cols=127 Identities=16% Similarity=0.059 Sum_probs=101.5
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
+++.+...+-+++++ ||||||+|+||+.+++.|++.+++|+|+|+|... |+| .+.++.+.|++|++++++++
T Consensus 183 ~R~~f~~~gw~~Vva--fqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g-~~K-----~~di~~~~R~~~~~~~~~~~ 254 (396)
T 1jhd_A 183 IRNEIKEHGWSKVVA--FQTRNPMHRAHEELCRMAMESLDADGVVVHMLLG-KLK-----KGDIPAPVRDAAIRTMAEVY 254 (396)
T ss_dssp HHHHHHHHTCSSEEE--EEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEEC-CCC-----TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEE--eccCCCCchHHHHHHHHHHHHcCCCeEEEEECCC-CCC-----CCCCCHHHHHHHHHHHHHhc
Confidence 344444333345655 8999999999999999999999999999999975 554 46699999999999999984
Q ss_pred -CC----eEEeeccccCCcccchHHHHHH-HHHHcC-------Cccc--CCccchH--HHhcCC--------ccEEEEec
Q 030661 90 -DF----IMVDPWEANQSGYQRTLTVLSR-VKNFLI-------EAGL--ISTGKKQ--NYIFPP--------CSASVELS 144 (173)
Q Consensus 90 -~~----i~v~~~E~~~~~~syT~~TL~~-lk~~~p-------~D~l--~~l~~W~--e~L~~~--------~~~vV~~r 144 (173)
|. +.+.++|.+..|++||+ +.. +++.|. .|.. .++..|+ ++|++. +.++++.|
T Consensus 255 ~p~~~v~l~~~p~~m~~aGPreai--lhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~il~~~~~~~~l~i~iv~~~~ 332 (396)
T 1jhd_A 255 FPPNTVMVTGYGFDMLYAGPREAV--LHAYFRQNMGATHFIIGRDHAGVGDYYGAFDAQTIFDDEVPEGAMEIEIFRADH 332 (396)
T ss_dssp SCTTCEEEEEEECCCCCCTHHHHH--HHHHHHHHTTCSEEEECTTTTCCTTCSCTTHHHHHHHHTSCTTSCSCEEEECCC
T ss_pred CCCcceEEEechHHhhcCCchHHH--HHHHHHHcCCCcEEEECCCCCCccccCCcchHHHHHHhcccccccceeEEeccc
Confidence 66 78888999999999998 433 555664 6875 7899999 888885 68888887
Q ss_pred CC
Q 030661 145 CM 146 (173)
Q Consensus 145 ~~ 146 (173)
..
T Consensus 333 ~~ 334 (396)
T 1jhd_A 333 TA 334 (396)
T ss_dssp EE
T ss_pred ce
Confidence 53
No 27
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.65 E-value=2e-16 Score=133.50 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEE-EecccCCCCcccccCCCCCHHHHHHHHHHHhcCC--CCeEEe
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCV-IGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS--DFIMVD 95 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~v-vp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~--~~i~v~ 95 (173)
|+++ ++|||||||+|+||+.++++|++.+ |++++ |++..+|++. +..+++++|++|+++++.+. +++.+-
T Consensus 6 ~~~~-~i~~G~FdP~H~GH~~li~~a~~~~--d~v~v~v~~~~~p~~~----~~~~~~~~R~~m~~~~~~~~~~~~~~~i 78 (341)
T 2qjo_A 6 KYQY-GIYIGRFQPFHLGHLRTLNLALEKA--EQVIIILGSHRVAADT----RNPWRSPERMAMIEACLSPQILKRVHFL 78 (341)
T ss_dssp SEEE-EEEEECCTTCCHHHHHHHHHHHHHE--EEEEEEEEEETCCCCS----SSCSCHHHHHHHHHTTSCHHHHTTEEEE
T ss_pred eeeE-EEEEEEeCCCCHHHHHHHHHHHHhC--CeEEEEECCcccCCCC----CCCCCHHHHHHHHHHHhhhccCCeEEEE
Confidence 3455 4579999999999999999999998 88875 7777677653 55689999999999999876 445444
Q ss_pred ec
Q 030661 96 PW 97 (173)
Q Consensus 96 ~~ 97 (173)
.+
T Consensus 79 ~~ 80 (341)
T 2qjo_A 79 TV 80 (341)
T ss_dssp EE
T ss_pred EC
Confidence 33
No 28
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.63 E-value=5.7e-16 Score=134.76 Aligned_cols=127 Identities=11% Similarity=-0.008 Sum_probs=100.4
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
.+++.....+-+++++ .|||||+|+||..+++.|++. +|.|+++|... |+| .+.++.+.|++|+++++++
T Consensus 145 e~r~~f~~~gw~~Vva--fqTrNPiHrgH~~l~~~ale~--~d~vll~P~~g-~~K-----~~d~~~~~R~~~~~~~i~~ 214 (349)
T 1v47_A 145 EVRAFFRQRGWRKVVA--FQTRNAPHRAHEYLIRLGLEL--ADGVLVHPILG-AKK-----PDDFPTEVIVEAYQALIRD 214 (349)
T ss_dssp HHHHHHHHTTCCSEEE--EEESSCCCHHHHHHHHHHHHH--SSEEEEEEBCS-CCC-----TTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEE--eecCCCCchHHHHHHHHHHHh--CCcEEEEECCC-CCC-----CCCCCHHHHHHHHHHHHhh
Confidence 3444444333356666 599999999999999999997 49999999864 444 5669999999999999998
Q ss_pred C-CC----eEEeeccccCCcccchHHHHHH-HHHHcC-------Cccc--CCccchH--HHhcCCc-----cEEEEecCC
Q 030661 89 S-DF----IMVDPWEANQSGYQRTLTVLSR-VKNFLI-------EAGL--ISTGKKQ--NYIFPPC-----SASVELSCM 146 (173)
Q Consensus 89 ~-~~----i~v~~~E~~~~~~syT~~TL~~-lk~~~p-------~D~l--~~l~~W~--e~L~~~~-----~~vV~~r~~ 146 (173)
+ |. +.+..+|.+..|++||+ +.. +++.|+ .|.. .++..|+ ++|++.+ .++++.|..
T Consensus 215 ~~p~~~~~l~~~p~~m~~aGPreai--lhaiirkn~G~t~fIVGrDhag~~~~y~~~~aq~i~~~~~~l~i~~v~~~~~~ 292 (349)
T 1v47_A 215 FLPQERVAFFGLATPMRYAGPKEAV--FHALVRKNFGATHFLVGRDHAGVGDFYDPYAAHRIFDRLPPLGIEIVKVGAVF 292 (349)
T ss_dssp HSCGGGEEECCBCSCCCCCTHHHHH--HHHHHHHHTTCSEEEECTTTTCSTTCSCTTHHHHGGGGSCCCSSEEEECCCEE
T ss_pred cCCCcceEEEechHHhhcCCcHHHH--HHHHHHHcCCCcEEEECcCCCCcccccCcccHHHHHHhhhhcCceEEeccccE
Confidence 6 76 66788888889999996 666 445554 6875 8999999 9999998 788877754
Q ss_pred c
Q 030661 147 S 147 (173)
Q Consensus 147 ~ 147 (173)
-
T Consensus 293 Y 293 (349)
T 1v47_A 293 H 293 (349)
T ss_dssp E
T ss_pred E
Confidence 3
No 29
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.29 E-value=3.1e-12 Score=105.94 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=81.8
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWE 98 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E 98 (173)
...+.++++|+|||+|.||+.++++|.+.++-|+++|..+. .++-..++..++.+.++|++|++ +++..+.+.+.
T Consensus 74 ~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~-D~~v~~~Kg~pi~s~eER~e~v~-~~k~VD~Vvv~--- 148 (236)
T 3hl4_A 74 ERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCS-DELTHNFKGFTVMNENERYDAVQ-HCRYVDEVVRN--- 148 (236)
T ss_dssp TSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECC-HHHHHHHTCCCSSCHHHHHHHHH-TBTTCSEEESS---
T ss_pred CCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcc-cHHHhhcCCCCCCCHHHHHHHHH-HhCCCCeEEEC---
Confidence 33444567999999999999999999998755777664442 23111111247899999999999 45555544431
Q ss_pred ccCCcccchHHHHHHHHHHcC---CcccCCc-cchH-HHhcCCccEEEEecCCchHHHHHHHHHHh
Q 030661 99 ANQSGYQRTLTVLSRVKNFLI---EAGLIST-GKKQ-NYIFPPCSASVELSCMSVSLCLIYLIFHK 159 (173)
Q Consensus 99 ~~~~~~syT~~TL~~lk~~~p---~D~l~~l-~~W~-e~L~~~~~~vV~~r~~~~~~~~~~~~~~~ 159 (173)
.....+.+.++.++-.+= .|..... ..+. +.+.+..-++.+.|+..+||+.|-.-+..
T Consensus 149 ---~p~~l~~d~i~~~~~d~Vv~GDd~~~~~~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~ 211 (236)
T 3hl4_A 149 ---APWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVR 211 (236)
T ss_dssp ---CCSSCCHHHHHHTTCCEEEEESSCCCCSSCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHH
T ss_pred ---CcCcCcHHHHHHcCCCEEEECCccccCCCchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHH
Confidence 112344455443321110 2211111 1222 66777788899999999888887655443
No 30
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.10 E-value=3.8e-11 Score=91.31 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc-CCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEE
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM-SPVNDAYKKRGLISAEHRINLCNLACKSSDFIMV 94 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~-~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v 94 (173)
|+++ +++|+|||+|.||+.++++|.+.. ++++++++.. +|.+ ..++.+.+.++|++|++. +...+.+.+
T Consensus 2 m~~v-~~~G~FD~vH~GH~~li~~a~~~~--~~~~v~v~~~~~~~~--~~~~~l~~~~eR~~~l~~-~~~vd~v~~ 71 (143)
T 3glv_A 2 MIRV-MATGVFDILHLGHIHYLKESKKLG--DELVVVVARDSTARN--NGKIPIFDENSRLALISE-LKVVDRAIL 71 (143)
T ss_dssp CCEE-EEEECCSSCCHHHHHHHHHHHTTS--SEEEEEECCHHHHHH--TTCCCSSCHHHHHHHHTT-BTTCSEEEE
T ss_pred ceEE-EEEeecCCCCHHHHHHHHHHHHhC--CCcEEEEECCcchhh--cCCCCCCCHHHHHHHHHh-cCCCCEEEE
Confidence 4555 469999999999999999999976 5666655432 1211 123578999999999986 443455544
No 31
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.04 E-value=9.2e-11 Score=101.67 Aligned_cols=124 Identities=15% Similarity=0.024 Sum_probs=73.9
Q ss_pred CCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCC--cEEEEecccCCC-Cccccc-CCCCCHHHHHHHHHHHhcCCCCe
Q 030661 17 QGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSE--GYCVIGGYMSPV-NDAYKK-RGLISAEHRINLCNLACKSSDFI 92 (173)
Q Consensus 17 ~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld--~v~vvp~~~~P~-k~~~~K-~~~~s~~~Rl~Ml~lai~~~~~i 92 (173)
|+..+.++++.|||||+|+||+.++++|.+.+ | +++|..+ .++. +...++ .++.+.++|++|++ +++..+++
T Consensus 194 ~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~--D~~~LiVgV~-~d~~v~~~Kg~~~pi~~~~ER~~~v~-~~~~vd~V 269 (341)
T 3elb_A 194 PQPGETVIYVAGAFDLFHIGHVDFLEKVHRLA--ERPYIIAGLH-FDQEVNHYKGKNYPIMNLHERTLSVL-ACRYVSEV 269 (341)
T ss_dssp CCTTCEEEEEEECCTTCCHHHHHHHHHHHTTS--SSEEEEEEEE-CHHHHHHHHCTTCCSSCHHHHHHHHH-TBTTCCEE
T ss_pred CCCCCEEEEEecccCCCCHHHHHHHHHHHHhC--CCCEEEEEEc-cCHhhHhhcCCCCCCCCHHHHHHHHH-HcCCCCCE
Confidence 33344556779999999999999999999987 7 5543222 2211 001011 47999999999999 57777777
Q ss_pred EEeeccccCCcccchHHHHHHHHHHcCCcccCCccch----------HHHhcCCccEEEEecCCchHHHHHH
Q 030661 93 MVDPWEANQSGYQRTLTVLSRVKNFLIEAGLISTGKK----------QNYIFPPCSASVELSCMSVSLCLIY 154 (173)
Q Consensus 93 ~v~~~E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W----------~e~L~~~~~~vV~~r~~~~~~~~~~ 154 (173)
.+... ..-+.+.++. +..|.+..-+.| |...-..--+..++|....||+.|-
T Consensus 270 ~v~~~------~~l~~~~~~~----~~~~~iv~G~d~~~~~~~g~d~y~~~k~~G~~~~i~~~~~~STt~ii 331 (341)
T 3elb_A 270 VIGAP------YAVTAELLSH----FKVDLVCHGKTEIIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIV 331 (341)
T ss_dssp EEEEC------SSCCHHHHHH----TTCSEEEECSSCCCCCTTSCCTTHHHHHHTCEEECCCSCCCCHHHHH
T ss_pred EECCC------CcchHHHHHh----cCCcEEEECCCCccccCCccchHHHHHhCCEEEEcCCCCCCCHHHHH
Confidence 76321 1133444433 333322222222 2122333456777888777777653
No 32
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=100.11 Aligned_cols=125 Identities=14% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
++++++ ++.|+|||+|.||+.++++|.+.. |+++|..+. .|.-...++..+.+.++|++|++. ++..+.+.+ +
T Consensus 5 ~~~~~v-~~~G~FD~lH~GH~~lL~~A~~l~--d~LiVgV~~-d~~v~~~K~~pi~s~eER~~~l~~-l~~VD~Vv~--f 77 (341)
T 3elb_A 5 RRAVRV-WCDGCYDMVHYGHSNQLRQARAMG--DYLIVGVHT-DEEIAKHKGPPVFTQEERYKMVQA-IKWVDEVVP--A 77 (341)
T ss_dssp CCCCEE-EEEECCCSCCHHHHHHHHHHHHTS--SEEEEEECC-HHHHHHHSSCCSSCHHHHHHHHHH-BTTCCEEEE--T
T ss_pred CCceEE-EEEeeCCCCCHHHHHHHHHHHHhC--CcCEEEeec-CHHHhccCCCCCCCHHHHHHHHHH-cCCCCEEEe--c
Confidence 344555 469999999999999999999987 777665443 232111122478999999999996 554444332 2
Q ss_pred cccCCcccchHHHHHHHHHHcCCcccCCccchH---------HHhcCCccEEEEecCCchHHHHHHHHH
Q 030661 98 EANQSGYQRTLTVLSRVKNFLIEAGLISTGKKQ---------NYIFPPCSASVELSCMSVSLCLIYLIF 157 (173)
Q Consensus 98 E~~~~~~syT~~TL~~lk~~~p~D~l~~l~~W~---------e~L~~~~~~vV~~r~~~~~~~~~~~~~ 157 (173)
+- ..-+.+-+ +++..|-+..-..|. +.+.+...++.++|..++||+.+..-.
T Consensus 78 ~~----~~~~~efi----~~~~~d~vV~G~D~~~g~~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri 138 (341)
T 3elb_A 78 AP----YVTTLETL----DKYNCDFCVHGNDITLTVDGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRM 138 (341)
T ss_dssp CC----SSCCHHHH----HHTTCSEEEECSCCCBCTTSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHH
T ss_pred CC----CCCHHHHH----HHhCCCEEEECCCCCCCCCCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHH
Confidence 11 01122223 355444332222332 344456889999999999988775443
No 33
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.25 E-value=1.5e-06 Score=75.02 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=48.0
Q ss_pred EEecCcCChhhHHHHHHHHHHHHhhCCC-cEEEEecccCCC-----CcccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 24 LVATGSFNPPTFMHLRMFELARDTLNSE-GYCVIGGYMSPV-----NDAYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 24 ~lfGGSFdP~H~GHl~ia~~a~~~l~ld-~v~vvp~~~~P~-----k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
++..|+||++|.||..++++|.+..... -..++.+. .|+ +.......+.+.++|+++++.+ +.+.+.+.+|
T Consensus 18 vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtF-dphP~~v~~~~~~~~~L~~~~eR~~ll~~~--gVD~v~v~~F 94 (338)
T 2x0k_A 18 AVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTF-DPHPVSVFLPRRAPLGITTLAERFALAESF--GIDGVLVIDF 94 (338)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEE-SSCHHHHHSTTCSCCBSSCHHHHHHHHHHT--TCSEEEEECT
T ss_pred EEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEe-cCCHHHHcCCccCCCCCCCHHHHHHHHHhc--CCCEEEEccc
Confidence 3458999999999999999998876321 12233333 232 1110013578999999999984 3566667677
Q ss_pred ccc
Q 030661 98 EAN 100 (173)
Q Consensus 98 E~~ 100 (173)
..+
T Consensus 95 ~~~ 97 (338)
T 2x0k_A 95 TRE 97 (338)
T ss_dssp TTS
T ss_pred cHH
Confidence 443
No 34
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=97.69 E-value=0.00013 Score=64.37 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=70.3
Q ss_pred ceEEEEecCcCChhhHHH-HHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCC--eEEe-
Q 030661 20 TYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDF--IMVD- 95 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GH-l~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~--i~v~- 95 (173)
.++++ ..|+||+|.|| ..+.+.|.+.. +.+++.|..- + .|.+-++.+.|++..+.+++++|. +.+.
T Consensus 188 ~~Vva--fqtrNP~HraH~e~~~r~a~e~~--~~lllhPlvG-~-----tK~~Dip~~vR~~~~~~~l~~yp~~~v~l~~ 257 (395)
T 1r6x_A 188 DRVVA--FQTRNPMHRAHRELTVRAAREAN--AKVLIHPVVG-L-----TKPGDIDHHTRVRVYQEIIKRYPNGIAFLSL 257 (395)
T ss_dssp CCEEE--ECCSSCCCHHHHHHHHHHHHHTT--CEEEECCBCS-B-----CCTTCCCHHHHHHHHHHHGGGSSTTCEEECC
T ss_pred CcEEE--eccCCCcchhhHHHHHHHHHHcC--CcEEEEECCC-C-----CCCCCCCHHHHHHHHHHHHHhCCCccEEEEe
Confidence 46666 47999999999 66666666643 6676655432 2 245679999999999999998764 4434
Q ss_pred -eccccCCcccchHHHHHH-HHHHcC-------CcccC--------CccchH--HHhcCCc
Q 030661 96 -PWEANQSGYQRTLTVLSR-VKNFLI-------EAGLI--------STGKKQ--NYIFPPC 137 (173)
Q Consensus 96 -~~E~~~~~~syT~~TL~~-lk~~~p-------~D~l~--------~l~~W~--e~L~~~~ 137 (173)
.+...-.||...+ +.. +++.|+ .|..- ++-.|+ ++|++.+
T Consensus 258 ~p~~mryAGPrEai--~HAiiRkN~GcthfIVGRDhAG~g~~~~~~d~Y~~~~aq~i~~~~ 316 (395)
T 1r6x_A 258 LPLAMRMSGDREAV--WHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESY 316 (395)
T ss_dssp BCCBCCCCHHHHHH--HHHHHHHHTTCSEEEECTTTTCCCBCTTSCBSSCTTHHHHHHHHH
T ss_pred cchhhhhcCcHHHH--HHHHHHHHcCCceEEECCCCCCCCCCCcccccCCcchHHHHHHhc
Confidence 4444456777665 444 577776 44332 555666 6766554
No 35
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00015 Score=63.06 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=40.3
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc-cCCCCcccccCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY-MSPVNDAYKKRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~-~~P~k~~~~K~~~~s~~~Rl~Ml~la 85 (173)
+++++. -|.|||+|+||..++++|.+ . +-+.+|.+. ..|... ....+.+.++|.+|+...
T Consensus 52 ~~~v~~-lG~FDg~H~GHq~lI~~a~~-~--~~~~~Vms~~~~~vqr--g~~~l~~~~~R~~~~~~~ 112 (357)
T 3gmi_A 52 DKIVCD-FTEYNPLHKGHKYALEKGKE-H--GIFISVLPGPLERSGR--GIPYFLNRYIRAEMAIRA 112 (357)
T ss_dssp CCEEEE-ECCCTTCCHHHHHHHHHHHT-S--SEEEEEECCTTSBCTT--SSBCSSCHHHHHHHHHHH
T ss_pred CCEEEE-EEecCccCHHHHHHHHHHHH-c--CCeEEEEcCchHHhcC--CCCcCCCHHHHHHHHHHC
Confidence 345544 69999999999999999999 2 433333321 100111 123678999999999886
No 36
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.55 E-value=0.00026 Score=64.07 Aligned_cols=116 Identities=16% Similarity=0.038 Sum_probs=75.8
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHH-HHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKS 88 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GH-l~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~ 88 (173)
+++.+....=+++++ ..|+||+|.|| ..+.+.|.+.. +.+++.|..- +. |.+-++.+.|++..+.++++
T Consensus 179 ~r~~f~~~gw~~v~a--fqtrnP~HraH~e~~~~~a~e~~--~~lll~pl~g-~~-----k~~di~~~~r~~~~~~~~~~ 248 (511)
T 1g8f_A 179 LRLEFQSRQWDRVVA--FQTRNPMHRAHRELTVRAAREAN--AKVLIHPVVG-LT-----KPGDIDHHTRVRVYQEIIKR 248 (511)
T ss_dssp HHHHHHHTTCCCEEE--EEESSCCCHHHHHHHHHHHHHHT--CEEEEEEBCS-BC-----STTCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCCCcEEE--EecCCCCchHHHHHHHHHHHHcC--CcEEEEECCC-CC-----CCCCCCHHHHHHHHHHHHHh
Confidence 334444322246666 46999999999 56666666643 6787776643 33 45669999999999999998
Q ss_pred CCC--eEE--eeccccCCcccchHHHHHH-HHHHcC-------CcccC--------CccchH--HHhcCCc
Q 030661 89 SDF--IMV--DPWEANQSGYQRTLTVLSR-VKNFLI-------EAGLI--------STGKKQ--NYIFPPC 137 (173)
Q Consensus 89 ~~~--i~v--~~~E~~~~~~syT~~TL~~-lk~~~p-------~D~l~--------~l~~W~--e~L~~~~ 137 (173)
+|. +.+ ..++..-.||...+ +.. +++.|+ .|..- ++-.|+ ++|++.+
T Consensus 249 yp~~~~~l~~~p~~m~yaGprea~--~hai~r~n~G~th~IvGrdhAg~g~~~~~~~~Y~~~~aq~i~~~~ 317 (511)
T 1g8f_A 249 YPNGIAFLSLLPLAMRMSGDREAV--WHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESY 317 (511)
T ss_dssp SCTTSEEECCBCCBCCCCHHHHHH--HHHHHHHHTTCSEEECCTTTTCCCBCTTSCBSSCTTHHHHHHHHT
T ss_pred CCcccEEEEecchhhhccCcHHHH--HHHHHHHhCCCceEEeCCCCCCCCCCCcccccCCcchHHHHHHhC
Confidence 764 333 45555556777665 444 577776 34332 555666 7776655
No 37
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=97.49 E-value=3e-05 Score=65.69 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=42.9
Q ss_pred EecCcCChhhHHHHHHHHHHHHhhC---CCcEEEEecccCCCC-c--ccccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 25 VATGSFNPPTFMHLRMFELARDTLN---SEGYCVIGGYMSPVN-D--AYKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 25 lfGGSFdP~H~GHl~ia~~a~~~l~---ld~v~vvp~~~~P~k-~--~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
+..|+||++|.||..++++|.+... +.-+.+ +. .|+- - ......+.+.++|++|++.+ . .+.+..|
T Consensus 3 vtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVv--tF-dphP~~l~~~~~~~l~~~~eR~~ll~~l-g---~~~v~~F 74 (293)
T 1mrz_A 3 VSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIY--TI-SYPPEYFLPDFPGLLMTVESRVEMLSRY-A---RTVVLDF 74 (293)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEE--EE-SSCGGGGSTTCCCBSSCHHHHHHHHTTT-S---CEEEECH
T ss_pred EEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEE--Ee-cCCHHHhCCCCCCCCCCHHHHHHHHHhC-C---CEEEEEh
Confidence 3479999999999999999987752 222322 21 2221 0 00124589999999999864 2 5555566
No 38
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.32 E-value=0.00079 Score=57.39 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=46.9
Q ss_pred ecCcCChhhHHHHHHHHHHHHhhCCCc-EEEEecccCCCCcc-------cccCCCCCHHHHHHHHHHHhcCCCCeEEeec
Q 030661 26 ATGSFNPPTFMHLRMFELARDTLNSEG-YCVIGGYMSPVNDA-------YKKRGLISAEHRINLCNLACKSSDFIMVDPW 97 (173)
Q Consensus 26 fGGSFdP~H~GHl~ia~~a~~~l~ld~-v~vvp~~~~P~k~~-------~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~ 97 (173)
.-|+||-+|.||..++++|.+...... -.+|-+ ..||-.. .....+.+.++|+++++.. +-+.+.+.+|
T Consensus 25 tiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~T-FdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l--GVD~v~~~~F 101 (308)
T 3op1_A 25 VLGYFDGIHKGHQELFRVANKAARKDLLPIVVMT-FNESPKIALEPYHPDLFLHILNPAERERKLKRE--GVEELYLLDF 101 (308)
T ss_dssp EESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEE-ESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH--TCCEEEEECC
T ss_pred EEecCCcccHHHHHHHHHHHHHHHhcCCceEEEE-ecCCHHHHhCccccCCcccCCCHHHHHHHHHHc--CCCEEEEecC
Confidence 469999999999999999988764322 122323 2343211 1124588999999999875 3556666666
Q ss_pred cc
Q 030661 98 EA 99 (173)
Q Consensus 98 E~ 99 (173)
..
T Consensus 102 ~~ 103 (308)
T 3op1_A 102 SS 103 (308)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 39
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=96.48 E-value=0.0044 Score=52.17 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=41.1
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~---K~~~~s~~~Rl~Ml~la 85 (173)
++++.+ |+||=+|.||+.++++|.+.. |.+ |+.-..+|..-... .+...+.++|+++++.+
T Consensus 22 ~~V~~v--gtfdgLH~GH~sLI~~A~~~a--d~v-VVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~ 85 (280)
T 2ejc_A 22 KTIGFV--PTMGYLHEGHLSLVRRARAEN--DVV-VVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKE 85 (280)
T ss_dssp CCEEEE--EECSCCCHHHHHHHHHHHHHS--SEE-EEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTT
T ss_pred CEEEEE--cCCccccHHHHHHHHHHHHhC--CEE-EEEEeCChHHhcCCcccccCCCCHHHHHHHHHHC
Confidence 345544 799999999999999999986 433 33333355322111 13367889999999754
No 40
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.19 E-value=0.0076 Score=54.63 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=51.2
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC---CCeEEee
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS---DFIMVDP 96 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~---~~i~v~~ 96 (173)
++++++ =|+||+|.||..+++.|+...+ +.+.+.|..- + .|.+-++.+.|++..+.+++++ ..+.+..
T Consensus 164 ~~v~af--qtrnP~Hr~H~~l~~~a~~~~~-~~llv~p~~g-~-----~k~~di~~~~R~~~~~~~~~~~~p~~~v~~~~ 234 (546)
T 2gks_A 164 DKIVAF--QTRNPMHRVHEELTKRAMEKVG-GGLLLHPVVG-L-----TKPGDVDVYTRMRIYKVLYEKYYDKKKTILAF 234 (546)
T ss_dssp SCEEEE--CCSSCCCHHHHHHHHHHHHHHT-SEEEECCBCS-B-----CCTTSCCHHHHHHHHHHHHHHHSCTTTEEECB
T ss_pred CcEEEE--ecCCCCcHHHHHHHHHHHHhcC-CcEEEEeCcC-C-----CCCCCCCHHHHHHHHHHHHHhcCCCCcEEEee
Confidence 567774 6899999999999999987543 6777765432 2 2356699999999999998764 3455555
Q ss_pred cc
Q 030661 97 WE 98 (173)
Q Consensus 97 ~E 98 (173)
+.
T Consensus 235 ~p 236 (546)
T 2gks_A 235 LP 236 (546)
T ss_dssp BC
T ss_pred cC
Confidence 44
No 41
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.13 E-value=0.0079 Score=54.87 Aligned_cols=72 Identities=15% Similarity=0.016 Sum_probs=50.5
Q ss_pred hcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCC
Q 030661 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSD 90 (173)
Q Consensus 11 ~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~ 90 (173)
++.+....-.+++++ =|+||+|.||..+++.|+...+ +.+.+.|.. .+. |.+-++.+.|++..+.+++.+|
T Consensus 182 r~~~~~~gw~~v~af--qtrnP~Hr~H~~l~~~a~~~~~-~~llv~pl~-g~~-----k~~di~~~~R~~~~~~~~~~~p 252 (573)
T 1m8p_A 182 RVHFDKLGWSRVVAF--QTRNPMHRAHRELTVRAARSRQ-ANVLIHPVV-GLT-----KPGDIDHFTRVRAYQALLPRYP 252 (573)
T ss_dssp HHHHHHTTCCSEEEE--CCSSCCCHHHHHHHHHHHHHTT-CEEEECCBC-CCC-----CTTCHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHcCCCeEEEE--eeCCCcchhhHHHHHHHHHhcC-CcEEEEeCC-CCC-----CCCCCCHHHHHHHHHHHHHhCC
Confidence 333333333566664 6899999999999999988743 677665532 122 3566899999999999988765
Q ss_pred C
Q 030661 91 F 91 (173)
Q Consensus 91 ~ 91 (173)
.
T Consensus 253 ~ 253 (573)
T 1m8p_A 253 N 253 (573)
T ss_dssp T
T ss_pred C
Confidence 3
No 42
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.66 E-value=0.2 Score=45.49 Aligned_cols=72 Identities=4% Similarity=-0.203 Sum_probs=51.0
Q ss_pred hhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCC
Q 030661 10 LSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSS 89 (173)
Q Consensus 10 ~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~ 89 (173)
+++.+....-++++++ =|-||+|.||..+++.+....+ |.+.+.|..- + .|.+-++.+-|++-.+.+++.+
T Consensus 154 ~r~~~~~~gw~~v~af--qtrnp~Hrah~~~~~~~~~~~~-~~lll~pl~g-~-----~k~~d~~~~~r~~~~~~~~~~~ 224 (552)
T 3cr8_A 154 LRALFVRRGWRRIIAW--QARQPMHRAQYEFCLKSAIENE-ANLLLHPQVG-G-----DITEAPAYFGLVRSFLAIRDRF 224 (552)
T ss_dssp HHHHHHHTTCCSEEEE--CCSSCCCHHHHHHHHHHHHHTT-CEEEECCBCC-C-----CTTTCTTHHHHHHHHHHHGGGS
T ss_pred HHHHHHhcCCCceEEE--ecCCCCchHHHHHHHHHHHhcC-CeEEEEeccC-C-----CCCCCCCHHHHHHHHHHHHHhC
Confidence 3444443333567775 8999999999999988885543 6665544321 1 2567799999999999999987
Q ss_pred C
Q 030661 90 D 90 (173)
Q Consensus 90 ~ 90 (173)
|
T Consensus 225 p 225 (552)
T 3cr8_A 225 P 225 (552)
T ss_dssp C
T ss_pred C
Confidence 6
No 43
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=90.02 E-value=0.83 Score=38.30 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~---K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+.. | ..|+--..+|..-... .+...+.++++++++.+
T Consensus 34 lH~GH~~LI~~a~~~a--~-~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 34 LHDGHLTMVRESVSTN--D-ITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp CCHHHHHHHHHHHTTS--S-EEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhC--C-EEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 9999999999999876 4 3344334455321111 13477899999999876
No 44
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=89.15 E-value=1 Score=37.66 Aligned_cols=50 Identities=22% Similarity=0.091 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+.. +.+ |+--..+|..-.. ..+...+.++|+++++.+
T Consensus 28 lH~GH~~Li~~A~~~a--~~v-Vvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~ 80 (276)
T 1v8f_A 28 LHRGHLALVERARREN--PFV-VVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEA 80 (276)
T ss_dssp CCHHHHHHHHHHHHHC--SEE-EEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC--CEE-EEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhC
Confidence 9999999999999986 443 3333334432111 113478899999999875
No 45
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.93 E-value=0.95 Score=41.83 Aligned_cols=80 Identities=13% Similarity=-0.032 Sum_probs=54.5
Q ss_pred hcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCC------cEEEEecccCCCCcccccCCCCCHHHHHHHHHH
Q 030661 11 SLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSE------GYCVIGGYMSPVNDAYKKRGLISAEHRINLCNL 84 (173)
Q Consensus 11 ~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld------~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~l 84 (173)
++..+...=.+++++ =|-||+|.||-.|.+.|++.+. | .+.+-|-. -+ .|.+-++.+-|++-.+.
T Consensus 404 r~~f~~~gw~~Vvaf--qtrNP~HraHe~l~~~a~~~~~-d~g~~~~~lll~pl~-G~-----tk~~di~~~~r~~~~~~ 474 (630)
T 1x6v_B 404 KQKFKDMNADAVSAF--QLRNPVHNGHALLMQDTHKQLL-ERGYRRPVLLLHPLG-GW-----TKDDDVPLMWRMKQHAA 474 (630)
T ss_dssp HHHHHHTTCSEEEEE--EESSCCCHHHHHHHHHHHHHHH-HHTCSSEEEEEEEBC-SC-----CCTTSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEE--ecCCCccHHHHHHHHHHHHHHH-hhccCCCcEEEEeCc-CC-----CCCCCCCHHHHHHHHHH
Confidence 333343333567774 4899999999999999987532 3 36554433 22 24677999999999999
Q ss_pred HhcC--CC--CeEEeeccc
Q 030661 85 ACKS--SD--FIMVDPWEA 99 (173)
Q Consensus 85 ai~~--~~--~i~v~~~E~ 99 (173)
.++. .| .+.+.-+..
T Consensus 475 ~~~~~y~p~~~~~l~~~p~ 493 (630)
T 1x6v_B 475 VLEEGVLNPETTVVAIFPS 493 (630)
T ss_dssp HHHTTSSCGGGEEECCBCC
T ss_pred HHHcCCCCCcceEEeeccc
Confidence 9985 33 566666554
No 46
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=87.65 E-value=0.93 Score=38.34 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHH-hhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARD-TLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~-~l~ld~v~vvp~~~~P~k~~~~---K~~~~s~~~Rl~Ml~la 85 (173)
+|.||+.+++.|.+ .. | +.|+--..+|..-... .+...+.++++++++.+
T Consensus 44 LH~GH~sLI~~A~~~~a--~-~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~ 97 (301)
T 3cov_A 44 LHEGHLALVRAAKRVPG--S-VVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97 (301)
T ss_dssp CCHHHHHHHHHHHTSTT--E-EEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC--C-EEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 99999999999998 64 3 3344334555432111 12478899999999875
No 47
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=87.04 E-value=1.8 Score=36.91 Aligned_cols=59 Identities=15% Similarity=0.029 Sum_probs=40.9
Q ss_pred ceEEE--EecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 20 TYVVL--VATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~--lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
++|++ -.|| .|.||+.+++.|.+.. |.| ||.-+.||..-+. ..+...+.+..+++++.+
T Consensus 43 ~~IgfVPTMG~----LH~GHlsLi~~A~~~~--d~v-VVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 106 (314)
T 3inn_A 43 KKIGFVPTMGY----LHKGHLELVRRARVEN--DVT-LVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314)
T ss_dssp CCEEEEEECSS----CCHHHHHHHHHHHHHC--SEE-EEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT
T ss_pred CeEEEEcCCCc----cCHHHHHHHHHHHHhC--CEE-EEEECCChhhcCCCccccccCCCHHHHHHHHHhC
Confidence 34554 3454 9999999999999985 554 5555667753211 234567889999999876
No 48
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=82.92 E-value=1.9 Score=36.21 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=41.6
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
+++++ =.|..=.|.||+.+++.|.+.. |.+ |+--..+|..-.. ..+...+.++++++++.+
T Consensus 22 ~~ig~--VPTMG~LH~GH~sLi~~A~~~~--d~v-VvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~ 85 (283)
T 3uk2_A 22 NRTAF--VPTMGNLHEGHLSLMRLARQHG--DPV-VASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE 85 (283)
T ss_dssp SSCEE--EEECSSCCHHHHHHHHHHHTTC--SSE-EEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT
T ss_pred CeEEE--ECCCCcccHHHHHHHHHHHHhC--CEE-EEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc
Confidence 44554 4777789999999999999986 554 3333445542111 134578899999999865
No 49
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=79.07 E-value=1.8 Score=36.45 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
.|.||+.+++.|++.. |.| ||.-+.||..-+. ..+..-+.+.=+++++.+
T Consensus 36 LH~GHlsLv~~Ar~~~--d~v-VVSIFVNP~QF~~~EDl~~YPRtle~D~~~l~~~ 88 (287)
T 3q12_A 36 LHEGHMTLVDEAKTRA--DVV-VVTIFVNPLQFERPDDLAHYPRTLQEDCEKLTRH 88 (287)
T ss_dssp CCHHHHHHHHHHHTTS--SEE-EEEECCCGGGCSSHHHHHHSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhC--CEE-EEEeccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 9999999999999985 554 6666778863221 112456677778888776
No 50
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=73.05 E-value=2.2 Score=35.44 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=40.1
Q ss_pred ceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccc---cCCCCCHHHHHHHHHHH
Q 030661 20 TYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYK---KRGLISAEHRINLCNLA 85 (173)
Q Consensus 20 ~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~---K~~~~s~~~Rl~Ml~la 85 (173)
++++++ -|--=.|.||+.+++.|++.. |.| |+.-+.||..-+.. .+..-+.+.=+++++.+
T Consensus 24 ~~ig~V--PTMGaLH~GHlsLv~~Ar~~~--d~v-VVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (264)
T 3n8h_A 24 QKIGFV--PTMGALHNGHISLIKKAKSEN--DVV-IVSIFVNPTQFNNPNDYQTYPNQLQQDIQILASL 87 (264)
T ss_dssp SCEEEE--EECSSCCHHHHHHHHHHHHHC--SEE-EEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHT
T ss_pred CcEEEE--CCCcchhHHHHHHHHHHHHhC--CEE-EEEEccCcccCCCcchhhcCCCCHHHHHHHHHHC
Confidence 345543 444568999999999999986 544 66667777632211 12356677777888765
No 51
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=65.61 E-value=7.4 Score=32.59 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEecccCCCCccc---ccCCCCCHHHHHHHHHHH
Q 030661 33 PTFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAY---KKRGLISAEHRINLCNLA 85 (173)
Q Consensus 33 ~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~---~K~~~~s~~~Rl~Ml~la 85 (173)
.|.||+.+++.|++ . |.| ||.-+.||..-+. ..+..-+.+.=+++++.+
T Consensus 36 LH~GHlsLv~~Ar~-~--d~V-VVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 87 (285)
T 3mxt_A 36 LHDGHLSLVKHAKT-Q--DKV-IVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDN 87 (285)
T ss_dssp CCHHHHHHHHHHTT-S--SEE-EEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHh-C--CEE-EEEeccCccccCCchhhhcCCCCHHHHHHHHHHC
Confidence 89999999999998 4 655 5555667763221 123456778888888776
No 52
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=49.25 E-value=20 Score=31.15 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=24.4
Q ss_pred cceEEEEecCcC---ChhhHHHHHHH------HHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSF---NPPTFMHLRMF------ELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSF---dP~H~GHl~ia------~~a~~~l~ld~v~vvp~~ 59 (173)
|++...+.|.+. +|+|.||+.-. .+.....| .+|.++++.
T Consensus 1 m~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G-~~V~~~~g~ 49 (500)
T 2d5b_A 1 MEKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDG-YRTFFLTGT 49 (500)
T ss_dssp CCCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEE
T ss_pred CCCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCC-Cceeeeccc
Confidence 344555657776 89999999632 22223334 467777765
No 53
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=39.69 E-value=76 Score=21.59 Aligned_cols=41 Identities=5% Similarity=0.008 Sum_probs=32.1
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.+|..|+-...+..+..+.+.++-+.+.|+..
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~v 71 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSI 71 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEE
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEE
Confidence 34567888999999999888888888888876556766644
No 54
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=39.38 E-value=43 Score=29.94 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=25.5
Q ss_pred eEEEEecCcC--ChhhHHHHH------HHHHHHHhhCCCcEEEEecc
Q 030661 21 YVVLVATGSF--NPPTFMHLR------MFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 21 ~ii~lfGGSF--dP~H~GHl~------ia~~a~~~l~ld~v~vvp~~ 59 (173)
++.++.+|=. |++|+||.. ++.+.++..| -+|.++++.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~G-y~V~~v~ni 87 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLG-YKVNYAMNI 87 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEE
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcC-CceeEEeee
Confidence 5666667754 999999965 3445556666 457787754
No 55
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=35.49 E-value=39 Score=28.97 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=23.0
Q ss_pred hhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 9 KLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 9 ~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+|-+|-.+|.++|+.++ ||. -..| .++..+.+..+.++|++.|+
T Consensus 11 ~~~~~~~~p~~m~ilvl-G~g----gre~-ala~~l~~s~~v~~v~~~pg 54 (442)
T 3lp8_A 11 TLEAQTQGPGSMNVLVI-GSG----GREH-SMLHHIRKSTLLNKLFIAPG 54 (442)
T ss_dssp ---------CCEEEEEE-ECS----HHHH-HHHHHHTTCTTEEEEEEEEC
T ss_pred ceecccCCCCCCEEEEE-CCC----hHHH-HHHHHHHhCCCCCEEEEECC
Confidence 45555567888898887 665 2333 46666655555667777765
No 56
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=35.41 E-value=22 Score=30.53 Aligned_cols=40 Identities=5% Similarity=-0.020 Sum_probs=24.6
Q ss_pred cceEEEEecCcC--ChhhHHHHHHH------HHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSF--NPPTFMHLRMF------ELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSF--dP~H~GHl~ia------~~a~~~l~ld~v~vvp~~ 59 (173)
..++.++.+|-+ +|+|.||+.-+ .+.++..| -+|.++.+.
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G-~~V~~~~~~ 84 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG-HTVQYVQNV 84 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEE
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcC-CCEEeCCCC
Confidence 345555567766 89999999732 23344444 357666554
No 57
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=34.60 E-value=14 Score=33.11 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=22.6
Q ss_pred hhhhccccc---CCcceEEEEecCcCC---hhhHHHHHHH------HHHHHhhCCCcEEEEecc
Q 030661 8 EKLSLESKT---QGKTYVVLVATGSFN---PPTFMHLRMF------ELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 8 ~~~~~~~~~---~~~~~ii~lfGGSFd---P~H~GHl~ia------~~a~~~l~ld~v~vvp~~ 59 (173)
++|-+|+.. ++.++.+.+.+.+.+ |+|.||+.-+ .+.++..| .+|.++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-~~V~~~~g~ 72 (564)
T 3kfl_A 10 GTLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKG-EEVFVMTGT 72 (564)
T ss_dssp --------------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEE
T ss_pred chhhhhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcC-CcEEEecCc
Confidence 456667642 222334445466554 9999998632 22234445 457666554
No 58
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=34.33 E-value=68 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.074 Sum_probs=32.3
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~ 60 (173)
|+++++|||| .-+=|--=+.-+..+.+.+.-+++.+++...
T Consensus 3 ~~~v~vl~GG-~S~E~evSl~S~~~v~~al~~~~~~v~~i~i 43 (364)
T 3i12_A 3 KLRVGIVFGG-KSAEHEVSLQSAKNIVDAIDKTRFDVVLLGI 43 (364)
T ss_dssp CEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred ccEEEEEecc-CCCCccchHHHHHHHHHHHhhcCCeEEEEEE
Confidence 5688999888 7777888888889999988766666666554
No 59
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=33.62 E-value=1e+02 Score=20.40 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=31.7
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+=..-+..++...+.+.-+++.|+..
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v 73 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTV 73 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45677888899999998888888888888876556766644
No 60
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=33.17 E-value=1.1e+02 Score=21.10 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=32.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~ 60 (173)
.+.+++.|.++..|+=...+..++.+.+.+.-+++.|+....
T Consensus 41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~ 82 (158)
T 3hdc_A 41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNV 82 (158)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEEC
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeC
Confidence 356788889999999888888888888888656777765443
No 61
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=31.00 E-value=1.2e+02 Score=21.89 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=29.0
Q ss_pred ceEEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEe
Q 030661 20 TYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIG 57 (173)
Q Consensus 20 ~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp 57 (173)
+.++++|. +++.|+=...+.-++.+.+.++-+.+.|+.
T Consensus 52 k~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~ 90 (179)
T 3ixr_A 52 QWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLG 90 (179)
T ss_dssp SEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred CCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEE
Confidence 46777777 999999888888888888888655665553
No 62
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=30.81 E-value=1.3e+02 Score=20.57 Aligned_cols=41 Identities=5% Similarity=-0.025 Sum_probs=31.3
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+=...+..++.+.+.+.-+++.|+..
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v 63 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGI 63 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEE
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 44577888999999998888888888888775566766643
No 63
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=30.53 E-value=40 Score=29.43 Aligned_cols=39 Identities=15% Similarity=-0.029 Sum_probs=23.8
Q ss_pred ceEEEEecCcC--ChhhHHHHHHH------HHHHHhhCCCcEEEEecc
Q 030661 20 TYVVLVATGSF--NPPTFMHLRMF------ELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 20 ~~ii~lfGGSF--dP~H~GHl~ia------~~a~~~l~ld~v~vvp~~ 59 (173)
.++.++.+|-- +|+|.||+.-+ .+.++..| .+|.++-+.
T Consensus 21 ~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G-~~V~~v~~~ 67 (461)
T 1li5_A 21 GEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLG-YKLKYVRNI 67 (461)
T ss_dssp TEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHT-CEEEEEECB
T ss_pred CCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcC-CCEEEeecC
Confidence 44555556655 99999999732 23344445 467676443
No 64
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=29.91 E-value=1e+02 Score=21.35 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=31.0
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|.+|..|+=...+..++.+.+.++-+.+.|+...
T Consensus 31 gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~ 71 (169)
T 2v1m_A 31 GHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFP 71 (169)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 45678888999999988888888888887764457666544
No 65
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=29.88 E-value=1e+02 Score=21.13 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred CcceEEEEecCcCChhhHHH-HHHHHHHHHhhCCCcEEEEecccC
Q 030661 18 GKTYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GH-l~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
+.+.+++.|.++..|+=... +..++.+.+.++-+.+.|+.....
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~ 71 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV 71 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec
Confidence 34577788899999998887 778888888886567777755443
No 66
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=29.82 E-value=88 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=32.0
Q ss_pred hhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 030661 8 EKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 8 ~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
++|..|-.= +|+++++|||| .-+=|--=+.-+..+++.+.-+++.+++....
T Consensus 12 ~~~~~~~~m-~~~~v~vl~GG-~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~ 63 (386)
T 3e5n_A 12 ENLYFQGHM-RKIRVGLIFGG-KSAEHEVSLQSARNILDALDPQRFEPVLIGID 63 (386)
T ss_dssp ----------CCEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred ccchhhhhc-CCceEEEEecc-CCCCchhHHHHHHHHHHHhCccCCEEEEEEEC
Confidence 344444331 35688888888 77778777788888888887666766665543
No 67
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=29.48 E-value=85 Score=26.42 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=33.0
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
|+||++|||| ..+=|--=+.-+..+++.++-+++.+++-...
T Consensus 37 ~~~v~vl~GG-~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~ 78 (383)
T 3k3p_A 37 KETLVLLYGG-RSAERDVSVLSAESVMRAINYDNFLVKTYFIT 78 (383)
T ss_dssp CEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCeEEEEeCC-CCCcchHHHHHHHHHHHHhhhcCCEEEEEEec
Confidence 4578888888 77779888999999999997777766665543
No 68
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=29.17 E-value=1.4e+02 Score=20.38 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=31.3
Q ss_pred CcceEEEEecCcCChh--hHHHHHHHHHHHHhh-CCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPP--TFMHLRMFELARDTL-NSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~--H~GHl~ia~~a~~~l-~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+ -...+..+..+.+.+ +-+.+.|+..
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v 75 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGI 75 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 3457788889999999 888888888888888 5455766644
No 69
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=28.52 E-value=62 Score=25.45 Aligned_cols=39 Identities=15% Similarity=-0.058 Sum_probs=23.3
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEE
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVI 56 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vv 56 (173)
.+++.+++||||=++...-....|++..+.+....+.+|
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vV 49 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLV 49 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 345667778888876654446667666665543334344
No 70
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=27.57 E-value=1.4e+02 Score=20.07 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=30.6
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNS-EGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~l-d~v~vvp~ 58 (173)
+.+.+++.|.++..|+-...+..++.+.+.++- +.+.|+..
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v 68 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 345778889999999988888888888887753 45655543
No 71
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=26.88 E-value=1.4e+02 Score=20.15 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=30.1
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|.=...+..++...+.+.-+.+.|+..
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v 67 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAV 67 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 34577788899999998888877888877776444656543
No 72
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=26.65 E-value=1.1e+02 Score=21.39 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 22 VVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 22 ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+++.|. +++.|+=...+..+..+.+.++-+.+.||..
T Consensus 32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v 69 (161)
T 3drn_A 32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGV 69 (161)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEE
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 777788 9999998888888888888886445766543
No 73
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=26.47 E-value=34 Score=29.38 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=28.0
Q ss_pred hhhhhcccccCCcceEEEEecCcCCh---hhHHHHHHHHHHHHhh--CCCcEEEEec
Q 030661 7 LEKLSLESKTQGKTYVVLVATGSFNP---PTFMHLRMFELARDTL--NSEGYCVIGG 58 (173)
Q Consensus 7 ~~~~~~~~~~~~~~~ii~lfGGSFdP---~H~GHl~ia~~a~~~l--~ld~v~vvp~ 58 (173)
.+.|.+.|+. +..++.++ .| |+| +|.||+..+....... +.+-+.+|..
T Consensus 26 ~e~L~~~L~~-~~~p~~vy-~G-~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D 79 (394)
T 2dlc_X 26 PQIIKDVLEV-QKRHLKLY-WG-TAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLAD 79 (394)
T ss_dssp HHHHHHHHHT-SCSCCEEE-EE-ECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred HHHHHHHHHc-cCCCeEEE-EE-eCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 3556666653 23343333 34 777 8999998776554444 3333555555
No 74
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=26.28 E-value=1.8e+02 Score=20.74 Aligned_cols=44 Identities=9% Similarity=-0.039 Sum_probs=34.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
.+.+++.|++|..|+=...+..++.+.+.++-+.+.|+.....+
T Consensus 38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~ 81 (180)
T 3kij_A 38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQ 81 (180)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCC
T ss_pred CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCc
Confidence 35678889999999999999888999888875567776554444
No 75
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=26.15 E-value=1.1e+02 Score=26.81 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=25.8
Q ss_pred ceEEEEecC--cCChhhHHHHHHH------HHHHHhhCCCcEEEEeccc
Q 030661 20 TYVVLVATG--SFNPPTFMHLRMF------ELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 20 ~~ii~lfGG--SFdP~H~GHl~ia------~~a~~~l~ld~v~vvp~~~ 60 (173)
.++.++.+| -.|++|+||..-. .+.++..| .+|.++.+..
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~G-y~V~~v~n~d 71 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRG-YEVTFVRNIT 71 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEECBB
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcC-CceEEecCcC
Confidence 456555565 5789999998743 33344445 4677877654
No 76
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=26.14 E-value=1.6e+02 Score=20.12 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.3
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.+.+++.|.++..|+=...+..++...+.++-+.+.|+..
T Consensus 34 gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v 73 (165)
T 3or5_A 34 GKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGI 73 (165)
T ss_dssp TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 3567788899999998888888888888887555766644
No 77
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=25.93 E-value=2.8e+02 Score=22.95 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=46.9
Q ss_pred CChhhhhcccccCCcceEEEEecCcCChh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCccccc---CCCCCHHHHH
Q 030661 5 LPLEKLSLESKTQGKTYVVLVATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKK---RGLISAEHRI 79 (173)
Q Consensus 5 ~p~~~~~~~~~~~~~~~ii~lfGGSFdP~--H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K---~~~~s~~~Rl 79 (173)
||-+.+.-+++..-+.+-+.+...+..|+ |.--|-++-.|++..+..+|.+|.-|.+..++.... ...++...-.
T Consensus 39 F~dGE~~v~i~esvrg~dV~iiqs~~~p~nd~lmeLl~~idA~k~asA~rIt~ViPY~~YaRQDr~~~~~r~pisak~vA 118 (319)
T 3dah_A 39 FSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKVVA 118 (319)
T ss_dssp CTTSCEEEEECSCCBTCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTBSEEEEEESSCTTTTCCSCCTTCCCCCHHHHHH
T ss_pred CCCCCEEEEECCCcCCCeEEEEccCCCCCcHHHHHHHHHHHHHHHcCCcEEEEEccCccccccccccCCCCCCccHHHHH
Confidence 45555555554333333344446666666 555566777778888888887665565554442111 2246677777
Q ss_pred HHHHHH
Q 030661 80 NLCNLA 85 (173)
Q Consensus 80 ~Ml~la 85 (173)
+|+..+
T Consensus 119 ~ll~~~ 124 (319)
T 3dah_A 119 NMLEIA 124 (319)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888765
No 78
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=25.33 E-value=1e+02 Score=27.20 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=23.5
Q ss_pred ccCCcceEEEEecCcC---ChhhHHHHHHHHH------HHHhhCCCcEEEEecc
Q 030661 15 KTQGKTYVVLVATGSF---NPPTFMHLRMFEL------ARDTLNSEGYCVIGGY 59 (173)
Q Consensus 15 ~~~~~~~ii~lfGGSF---dP~H~GHl~ia~~------a~~~l~ld~v~vvp~~ 59 (173)
+++++.+..+. |+.. +|+|.||+.-+-. .....| .+|.++++.
T Consensus 13 ~~~~~~~~~v~-~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G-~~V~~~~g~ 64 (560)
T 3h99_A 13 MTQVAKKILVT-CASPYANGSIHLGHMLEHIQADVWVRYQRMRG-HEVNFICAD 64 (560)
T ss_dssp ----CCEEEEE-ECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEE
T ss_pred CCCCCCcEEEe-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHcC-CeEEEeeee
Confidence 34555565554 6655 5899999874322 233334 457777764
No 79
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=25.32 E-value=1.3e+02 Score=22.78 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=30.2
Q ss_pred cceEEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.+.+++.|. |++.|+=...+.-+.++.+.++-+.+.||..
T Consensus 69 Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~I 109 (222)
T 3ztl_A 69 GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIAC 109 (222)
T ss_dssp TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 356777778 7999998888888888888886455766643
No 80
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=25.23 E-value=1.2e+02 Score=24.78 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=25.9
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
++||++||||. -+=|-==+.-+..+++.++-+++.+++.+..+
T Consensus 3 kkkv~vl~GG~-S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~ 45 (357)
T 4fu0_A 3 NKKIAVIFGGN-STEYEVSLQSASAVFENINTNKFDIIPIGITR 45 (357)
T ss_dssp CEEEEEEEECS-STTHHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CCEEEEEECCC-ccchHHHHHHHHHHHHHHhHhCCEEEEEEEeC
Confidence 46788888884 22233223445667777766677777665443
No 81
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=25.11 E-value=1.5e+02 Score=21.05 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=30.8
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|.++..|+=...+..++.+.+.++-+++.|+...
T Consensus 60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~ 100 (186)
T 1jfu_A 60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAIN 100 (186)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEE
T ss_pred CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence 45678888999999888888888888888764567666443
No 82
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=25.04 E-value=1.3e+02 Score=21.87 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=31.1
Q ss_pred cceEEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|. +++.|+=...+..+..+.+.++-+.+.|+...
T Consensus 45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs 86 (195)
T 2bmx_A 45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVS 86 (195)
T ss_dssp TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEE
T ss_pred CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456788888 99999988888888888887764567666443
No 83
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=24.81 E-value=26 Score=24.35 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.6
Q ss_pred EEEecCcCChh
Q 030661 23 VLVATGSFNPP 33 (173)
Q Consensus 23 i~lfGGSFdP~ 33 (173)
-+.||||+||.
T Consensus 46 ~m~fgGs~~P~ 56 (114)
T 3djh_A 46 LMAFGGSSEPC 56 (114)
T ss_dssp EEEETTBCSSC
T ss_pred eEEEcCcCCCE
Confidence 35789999883
No 84
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=24.78 E-value=1.5e+02 Score=19.29 Aligned_cols=51 Identities=6% Similarity=-0.054 Sum_probs=29.6
Q ss_pred CCChhhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc
Q 030661 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~ 60 (173)
-+|...+...++.-.+.+.++++|++= .. -..+-..+...|. +|.++.++.
T Consensus 40 ~ip~~~l~~~~~~l~~~~~ivvyC~~g---~r--s~~a~~~L~~~G~-~v~~l~GG~ 90 (100)
T 3foj_A 40 TIPMNSIPDNLNYFNDNETYYIICKAG---GR--SAQVVQYLEQNGV-NAVNVEGGM 90 (100)
T ss_dssp ECCGGGGGGCGGGSCTTSEEEEECSSS---HH--HHHHHHHHHTTTC-EEEEETTHH
T ss_pred ECCHHHHHHHHHhCCCCCcEEEEcCCC---ch--HHHHHHHHHHCCC-CEEEecccH
Confidence 367888887776333444444557653 12 2344455666677 777776554
No 85
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=24.55 E-value=81 Score=21.14 Aligned_cols=41 Identities=12% Similarity=-0.088 Sum_probs=30.8
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+-...+..++.+.+.+.-+.+.|+..
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v 70 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAA 70 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 34567788899999998888888888888876444766644
No 86
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=24.53 E-value=1.7e+02 Score=19.92 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=30.0
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.+.+++.|.++..|+=...+..++.+.+.++-+.+.|+..
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v 68 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGV 68 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 4567788899999998777777888888776445766543
No 87
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=24.32 E-value=80 Score=21.85 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=18.2
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHH
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARD 46 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~ 46 (173)
+..++|-|+++| ..|+-.+++.+..
T Consensus 2 ~~~i~~~G~~~~-~Kg~~~li~a~~~ 26 (166)
T 3qhp_A 2 PFKIAMVGRYSN-EKNQSVLIKAVAL 26 (166)
T ss_dssp CEEEEEESCCST-TTTHHHHHHHHHT
T ss_pred ceEEEEEeccch-hcCHHHHHHHHHH
Confidence 455678999998 5888777766554
No 88
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=24.27 E-value=1.7e+02 Score=19.77 Aligned_cols=41 Identities=7% Similarity=0.104 Sum_probs=31.2
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+=...+..++.+.+.+.-+.+.|+..
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v 67 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCV 67 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 34577788899999988888888888888886556666544
No 89
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=24.07 E-value=1.6e+02 Score=20.35 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=31.3
Q ss_pred cceEEEEecCcCChh-hHHHHHHHHHHHHhhC----CCcEEEEecccCC
Q 030661 19 KTYVVLVATGSFNPP-TFMHLRMFELARDTLN----SEGYCVIGGYMSP 62 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~-H~GHl~ia~~a~~~l~----ld~v~vvp~~~~P 62 (173)
.+.+++.|.+|..|+ =...+..++++.+.++ .+++.|+.....|
T Consensus 26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~ 74 (171)
T 2rli_A 26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP 74 (171)
T ss_dssp TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS
T ss_pred CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC
Confidence 456788899999997 7777777777777773 2567766554444
No 90
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=23.89 E-value=1.9e+02 Score=23.69 Aligned_cols=38 Identities=5% Similarity=0.044 Sum_probs=25.1
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCC--CcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNS--EGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~l--d~v~vvp~~ 59 (173)
+-+++++ ||.-|.. +.-.+.+++.+..+- .+|.|||+.
T Consensus 26 ~g~l~ii-GGgedk~--~~~~i~~~~v~lagg~~~~I~~IptA 65 (291)
T 3en0_A 26 QPAILII-GGAEDKV--HGREILQTFWSRSGGNDAIIGIIPSA 65 (291)
T ss_dssp SCCEEEE-CSSCCSS--SCCHHHHHHHHHTTGGGCEEEEECTT
T ss_pred CceEEEE-ECCCCcc--ChHHHHHHHHHHcCCCCCeEEEEeCC
Confidence 3456665 9888743 334677777777754 478888765
No 91
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=23.82 E-value=1.7e+02 Score=19.58 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.4
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLN-SEGYCVIG 57 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~-ld~v~vvp 57 (173)
+.+.+++.|.++..|+-..-+..++.+.+.++ -+++.|+.
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~ 67 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVL 67 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 34577888999999998877777777777775 24565553
No 92
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=23.65 E-value=1.5e+02 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=30.9
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|.+|..|+=...+..++++.+.++-+.+.|+...
T Consensus 49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs 89 (181)
T 2p31_A 49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP 89 (181)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEE
Confidence 35678889999999988888888888887764457666443
No 93
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=23.50 E-value=1.3e+02 Score=22.68 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=29.0
Q ss_pred cceEEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.+.+++.|. +|+.|+=...+.-+.++.+.++-+.+.||..
T Consensus 48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~I 88 (211)
T 2pn8_A 48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVAC 88 (211)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEE
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346777888 9999987777777777777775456766643
No 94
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=23.35 E-value=1.8e+02 Score=19.68 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.5
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNS-EGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~l-d~v~vvp~ 58 (173)
+.+.+++.|.++..|+-...+..++.+.+.++- +++.|+..
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v 68 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFC 68 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEE
Confidence 345678889999999988888888888887752 45655533
No 95
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=23.05 E-value=3.3e+02 Score=22.72 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=61.6
Q ss_pred ecCcCChh--hHHHHHHHHHHHHhhCCCcEEEEecccCCCCcccccCCCCCHHHHHHHHHHHhcCCCCeEEeeccccCCc
Q 030661 26 ATGSFNPP--TFMHLRMFELARDTLNSEGYCVIGGYMSPVNDAYKKRGLISAEHRINLCNLACKSSDFIMVDPWEANQSG 103 (173)
Q Consensus 26 fGGSFdP~--H~GHl~ia~~a~~~l~ld~v~vvp~~~~P~k~~~~K~~~~s~~~Rl~Ml~lai~~~~~i~v~~~E~~~~~ 103 (173)
+||+|+|. -.--+.+++.+++.++-|--+.+ .. +...+.++=+++++. +++.+ +.-+| ++-
T Consensus 183 ~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~v-Da----------n~~~~~~~a~~~~~~-l~~~~---i~~iE--eP~ 245 (410)
T 2qq6_A 183 FWNGAISPREHEAMVARVAAVREAVGPEVEVAI-DM----------HGRFDIPSSIRFARA-MEPFG---LLWLE--EPT 245 (410)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEE-EC----------TTCCCHHHHHHHHHH-HGGGC---CSEEE--CCS
T ss_pred cCccccchhhHHHHHHHHHHHHHhcCCCCEEEE-EC----------CCCCCHHHHHHHHHH-HhhcC---CCeEE--CCC
Confidence 47789862 23356777777887874432222 11 233566666666665 44433 22223 344
Q ss_pred ccchHHHHHHHHHHcC-----CcccCCccchH-HHhc--CCccEEEEecCCchHHHHHHHH
Q 030661 104 YQRTLTVLSRVKNFLI-----EAGLISTGKKQ-NYIF--PPCSASVELSCMSVSLCLIYLI 156 (173)
Q Consensus 104 ~syT~~TL~~lk~~~p-----~D~l~~l~~W~-e~L~--~~~~~vV~~r~~~~~~~~~~~~ 156 (173)
+...++-++.+++..+ .+++.+ .|. ++++ ..|+++.+.-+..-+.++...+
T Consensus 246 ~~~d~~~~~~l~~~~~iPIa~dE~~~~--~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i 304 (410)
T 2qq6_A 246 PPENLDALAEVRRSTSTPICAGENVYT--RFDFRELFAKRAVDYVMPDVAKCGGLAEAKRI 304 (410)
T ss_dssp CTTCHHHHHHHHTTCSSCEEECTTCCS--HHHHHHHHHTTCCSEECCBHHHHTHHHHHHHH
T ss_pred ChhhHHHHHHHHhhCCCCEEeCCCcCC--HHHHHHHHHcCCCCEEecCccccCCHHHHHHH
Confidence 4566888888888654 334443 344 5555 3477777765554444444443
No 96
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=23.02 E-value=1.5e+02 Score=21.14 Aligned_cols=41 Identities=7% Similarity=-0.071 Sum_probs=31.3
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|.+|..|+=...+..++++.+.++-+.+.|+...
T Consensus 47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs 87 (183)
T 2obi_A 47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFP 87 (183)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 35678889999999988888888888888764457666543
No 97
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=22.74 E-value=1.6e+02 Score=19.75 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=28.5
Q ss_pred eEEEEecCcCChhhHHHHHHHHHHHHhhCCCcE-EEEecccC
Q 030661 21 YVVLVATGSFNPPTFMHLRMFELARDTLNSEGY-CVIGGYMS 61 (173)
Q Consensus 21 ~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v-~vvp~~~~ 61 (173)
-+.+=||...|+-.+..+.-+..+++.-....| -+||++.+
T Consensus 16 allVefg~~id~~~~~~v~al~~~L~~~~~~Gv~EiVPa~~S 57 (101)
T 2kwa_A 16 AMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTS 57 (101)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHHHHHHSCCTTEEEEEECSSE
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHccCCCCeEEeccCceE
Confidence 456668998999887766655666665555664 58998764
No 98
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=22.72 E-value=1.7e+02 Score=19.99 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred cceEEEEecCcCChh-hHHHHHHHHHHHHhhCC----CcEEEEecccCC
Q 030661 19 KTYVVLVATGSFNPP-TFMHLRMFELARDTLNS----EGYCVIGGYMSP 62 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~-H~GHl~ia~~a~~~l~l----d~v~vvp~~~~P 62 (173)
.+.+++.|++|..|+ =...+..++++.+.++- +++.|+.....|
T Consensus 23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~ 71 (164)
T 2ggt_A 23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP 71 (164)
T ss_dssp TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence 456788889999997 77777777777776642 467666544433
No 99
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=22.62 E-value=1.6e+02 Score=20.42 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=30.1
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
.+.+++.|.++..|+=...+..+..+.+.++-+.+.|+..
T Consensus 35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i 74 (152)
T 2lrt_A 35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQI 74 (152)
T ss_dssp GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEE
Confidence 3567888899999998888888888888775444766644
No 100
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=22.48 E-value=1.7e+02 Score=19.08 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=29.3
Q ss_pred CCChhhhhcccccCCcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEeccc
Q 030661 4 PLPLEKLSLESKTQGKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 4 ~~p~~~~~~~~~~~~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~ 60 (173)
-+|...+..++..-++.+.++++|.+=. --..+-..+...|. +|.++.++.
T Consensus 40 ~ip~~~l~~~~~~l~~~~~iv~yC~~g~-----rs~~a~~~L~~~G~-~v~~l~GG~ 90 (103)
T 3eme_A 40 LIPMDTIPDNLNSFNKNEIYYIVCAGGV-----RSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp ECCGGGGGGCGGGCCTTSEEEEECSSSS-----HHHHHHHHHHTTTC-EEEEETTHH
T ss_pred EcCHHHHHHHHHhCCCCCeEEEECCCCh-----HHHHHHHHHHHCCC-CeEEeCCCH
Confidence 3677788777753333444445576541 23344555666777 777776654
No 101
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=22.42 E-value=1.6e+02 Score=20.01 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=32.1
Q ss_pred cceEEEEecCcCChhhHHH-HHHHHHHHHhhCCCcEEEEeccc
Q 030661 19 KTYVVLVATGSFNPPTFMH-LRMFELARDTLNSEGYCVIGGYM 60 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GH-l~ia~~a~~~l~ld~v~vvp~~~ 60 (173)
.+.+++.|.++..|+-..+ +..++.+.+.++-+.+.|+....
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~ 72 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS 72 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence 4577888999999999886 88888888888655577765543
No 102
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=21.83 E-value=54 Score=28.84 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=22.7
Q ss_pred EEEEecCcC---ChhhHHHHHHH------HHHHHhhCCCcEEEEecc
Q 030661 22 VVLVATGSF---NPPTFMHLRMF------ELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 22 ii~lfGGSF---dP~H~GHl~ia------~~a~~~l~ld~v~vvp~~ 59 (173)
...+.|.+. +|+|.||+.-+ .+.++..| .+|.++.+.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G-~~V~~~~g~ 71 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNG-MDVYFLTGT 71 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEE
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcC-CcEEEecCc
Confidence 455567776 69999998643 22234444 457676654
No 103
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=21.40 E-value=1.3e+02 Score=21.19 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=29.9
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|.+|..|+=. -+..++.+.+.++-+.+.|+...
T Consensus 32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs 71 (171)
T 3cmi_A 32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFP 71 (171)
T ss_dssp TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEE
T ss_pred CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEE
Confidence 45678888999999988 88888888887764457666543
No 104
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=21.36 E-value=1.7e+02 Score=18.79 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=29.0
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|+++..|+=...+..++.+.+..+ +++.++..
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i 60 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG-DDYVVLTV 60 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT-TTEEEEEE
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 34567888999999998777777777777743 45655543
No 105
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=21.21 E-value=1.3e+02 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=29.5
Q ss_pred cceEEEEec-CcCChhhHHHHHHHHHHHHhhCCCcEEEEecc
Q 030661 19 KTYVVLVAT-GSFNPPTFMHLRMFELARDTLNSEGYCVIGGY 59 (173)
Q Consensus 19 ~~~ii~lfG-GSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~ 59 (173)
.+.+++.|. +++.|+=..++..++.+.+.++-+.+.|+...
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs 72 (187)
T 1we0_A 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVS 72 (187)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 356778888 99999977888777777777753456555443
No 106
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=21.06 E-value=1.9e+02 Score=19.91 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=31.4
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMS 61 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~ 61 (173)
.+.+++.|.++..|+=...+..++++.+.++-+.+.|+.....
T Consensus 32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d 74 (170)
T 2p5q_A 32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN 74 (170)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence 4567888899999987777777778877776444766654443
No 107
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.88 E-value=1e+02 Score=24.22 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=18.8
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLN 49 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ 49 (173)
+++.|++||||=.+..--+...|++..+.+.
T Consensus 8 ~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA 38 (216)
T 1ydh_A 8 RFRKICVFCGSHSGHREVFSDAAIELGNELV 38 (216)
T ss_dssp SCSEEEEECCSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHH
Confidence 4556777888766554445566666555553
No 108
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=20.62 E-value=1.8e+02 Score=19.65 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=28.9
Q ss_pred CcceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEec
Q 030661 18 GKTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGG 58 (173)
Q Consensus 18 ~~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~ 58 (173)
+.+.+++.|.++..|+=...+..++.+.+.++-+.+.|+..
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v 65 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAV 65 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence 34577888899999987777777777777765344666543
No 109
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=20.49 E-value=1e+02 Score=26.68 Aligned_cols=29 Identities=10% Similarity=-0.014 Sum_probs=17.6
Q ss_pred ChhhHHHHHHH--HHH----HHhhCCCcEEEEeccc
Q 030661 31 NPPTFMHLRMF--ELA----RDTLNSEGYCVIGGYM 60 (173)
Q Consensus 31 dP~H~GHl~ia--~~a----~~~l~ld~v~vvp~~~ 60 (173)
+|+|.||+.-. ..+ ....| ..|.++++.-
T Consensus 18 g~lHiGH~~~~~~~D~~~R~~r~~G-~~V~~~~g~D 52 (497)
T 2csx_A 18 DVPHLGHAYTTIAADTIARYYRLRD-YDVFFLTGTD 52 (497)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEEE
T ss_pred CccchhhHHHHHHHHHHHHHHHhcC-CceeeecccC
Confidence 78999998632 222 23334 4677777753
No 110
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=20.35 E-value=1.8e+02 Score=23.40 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=26.1
Q ss_pred cceEEEEecCcCChhhHHHHHHHHHHHHhhCCCcEEEEecccCC
Q 030661 19 KTYVVLVATGSFNPPTFMHLRMFELARDTLNSEGYCVIGGYMSP 62 (173)
Q Consensus 19 ~~~ii~lfGGSFdP~H~GHl~ia~~a~~~l~ld~v~vvp~~~~P 62 (173)
|+++++|+|| ..+=|--=+.-+..+.+.++-.++.+++...+|
T Consensus 3 ~~~v~vl~gG-~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~ 45 (343)
T 1e4e_A 3 RIKVAILFGG-CSEEHDVSVKSAIEIAANINKEKYEPLYIGITK 45 (343)
T ss_dssp CEEEEEEEEC-SSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECT
T ss_pred CcEEEEEeCC-CCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcC
Confidence 5678888777 444454444456667777765566666544443
Done!