Query 030662
Match_columns 173
No_of_seqs 287 out of 2079
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 1.2E-22 4.1E-27 169.6 18.0 78 5-83 100-185 (437)
2 2dgu_A Heterogeneous nuclear r 99.9 2.6E-22 8.9E-27 135.9 12.2 82 3-85 7-88 (103)
3 2dnq_A RNA-binding protein 4B; 99.9 4.5E-22 1.5E-26 131.5 10.8 81 2-83 3-83 (90)
4 2kvi_A Nuclear polyadenylated 99.9 3.3E-22 1.1E-26 133.9 9.2 81 2-83 5-86 (96)
5 1x4c_A Splicing factor, argini 99.9 1.8E-21 6.1E-26 133.0 12.8 76 5-81 13-94 (108)
6 4fxv_A ELAV-like protein 1; RN 99.9 6.5E-22 2.2E-26 133.5 9.4 73 6-79 18-98 (99)
7 2dgt_A RNA-binding protein 30; 99.9 1.6E-21 5.5E-26 129.4 11.1 80 3-83 6-85 (92)
8 2fy1_A RNA-binding motif prote 99.9 2.8E-21 9.7E-26 133.8 12.2 82 1-83 1-89 (116)
9 2dnp_A RNA-binding protein 14; 99.9 1.5E-21 5.2E-26 129.0 10.3 80 3-83 5-84 (90)
10 3ex7_B RNA-binding protein 8A; 99.9 1.4E-21 4.6E-26 136.8 10.0 80 4-84 19-106 (126)
11 2cpd_A Apobec-1 stimulating pr 99.9 3.9E-21 1.3E-25 129.2 11.5 78 4-82 12-91 (99)
12 1x4a_A Splicing factor, argini 99.9 3.9E-21 1.3E-25 131.3 11.5 79 3-82 18-101 (109)
13 2cqi_A Nucleolysin TIAR; RNA r 99.9 6.4E-21 2.2E-25 128.9 11.6 82 2-84 10-97 (103)
14 2cq3_A RNA-binding protein 9; 99.9 1.2E-20 4.1E-25 127.5 12.7 81 3-84 11-97 (103)
15 1whw_A Hypothetical protein ri 99.9 9.4E-21 3.2E-25 127.1 12.0 81 2-83 3-91 (99)
16 2xnq_A Nuclear polyadenylated 99.9 5E-21 1.7E-25 128.5 10.5 77 3-80 18-95 (97)
17 1wf1_A RNA-binding protein RAL 99.9 3.9E-21 1.3E-25 131.6 9.9 76 6-82 26-102 (110)
18 2dnz_A Probable RNA-binding pr 99.9 1.1E-20 3.7E-25 125.8 11.7 79 4-83 2-88 (95)
19 3r27_A HnRNP L, heterogeneous 99.9 3.7E-21 1.3E-25 129.7 9.4 78 3-81 17-98 (100)
20 2dgx_A KIAA0430 protein; RRM d 99.8 5.3E-21 1.8E-25 128.0 10.0 80 3-83 5-93 (96)
21 2dgs_A DAZ-associated protein 99.8 1.4E-20 4.7E-25 126.4 12.1 80 3-84 6-93 (99)
22 3s8s_A Histone-lysine N-methyl 99.8 4.7E-21 1.6E-25 131.6 9.8 76 4-80 3-86 (110)
23 2cqh_A IGF-II mRNA-binding pro 99.8 3.7E-21 1.3E-25 127.8 8.9 81 2-83 3-86 (93)
24 1x4d_A Matrin 3; structural ge 99.8 4.4E-21 1.5E-25 130.1 9.4 78 4-82 12-94 (102)
25 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 3.9E-25 128.0 11.4 80 3-83 11-98 (105)
26 1wex_A Hypothetical protein (r 99.8 8.7E-21 3E-25 129.1 10.7 81 3-84 11-95 (104)
27 2d9p_A Polyadenylate-binding p 99.8 9.9E-21 3.4E-25 128.0 10.8 80 3-83 11-96 (103)
28 1x5s_A Cold-inducible RNA-bind 99.8 8.7E-21 3E-25 127.9 10.4 80 3-83 8-95 (102)
29 2cq1_A PTB-like protein L; RRM 99.8 2E-20 6.8E-25 126.6 12.2 81 3-84 11-95 (101)
30 2dnm_A SRP46 splicing factor; 99.8 7.1E-21 2.4E-25 128.7 9.9 80 3-83 9-96 (103)
31 3beg_B Splicing factor, argini 99.8 3.6E-21 1.2E-25 133.1 8.6 73 6-79 15-93 (115)
32 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.9E-21 2.4E-25 128.4 9.8 81 3-84 8-96 (102)
33 2cq0_A Eukaryotic translation 99.8 9.8E-21 3.3E-25 128.0 10.5 79 4-83 12-98 (103)
34 1x5t_A Splicing factor 3B subu 99.8 8.5E-21 2.9E-25 126.5 10.0 79 4-83 2-89 (96)
35 1sjq_A Polypyrimidine tract-bi 99.8 3.1E-21 1.1E-25 131.3 7.9 80 3-83 12-95 (105)
36 1h2v_Z 20 kDa nuclear CAP bind 99.8 9.4E-21 3.2E-25 137.3 10.9 78 4-82 36-121 (156)
37 2dgo_A Cytotoxic granule-assoc 99.8 2.6E-20 8.9E-25 128.3 12.5 82 3-85 11-100 (115)
38 2jvo_A Nucleolar protein 3; nu 99.8 6.2E-21 2.1E-25 130.5 9.2 79 3-82 27-105 (108)
39 1why_A Hypothetical protein ri 99.8 1.2E-20 4.3E-25 126.2 10.3 79 3-82 13-95 (97)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-20 5.1E-25 133.6 11.3 79 4-83 39-125 (139)
41 4a8x_A RNA-binding protein wit 99.8 2.3E-20 7.7E-25 122.4 10.9 77 5-82 2-87 (88)
42 4f25_A Polyadenylate-binding p 99.8 9E-21 3.1E-25 131.0 9.3 76 6-82 4-85 (115)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.1E-20 7.1E-25 121.9 10.1 75 3-78 3-85 (85)
44 2cpj_A Non-POU domain-containi 99.8 2.1E-20 7.1E-25 125.6 10.3 79 4-83 12-92 (99)
45 2dgv_A HnRNP M, heterogeneous 99.8 1.6E-20 5.3E-25 124.3 9.1 80 3-83 4-89 (92)
46 2ad9_A Polypyrimidine tract-bi 99.8 1.4E-20 4.9E-25 130.8 9.3 81 3-84 27-111 (119)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-20 4.8E-25 123.2 8.7 76 4-80 3-86 (87)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-20 1.1E-24 125.8 10.6 79 4-83 12-100 (105)
49 2cqd_A RNA-binding region cont 99.8 9.6E-20 3.3E-24 125.7 13.1 78 3-82 13-98 (116)
50 2cpz_A CUG triplet repeat RNA- 99.8 1.6E-20 5.6E-25 129.4 9.2 79 4-83 22-108 (115)
51 2do4_A Squamous cell carcinoma 99.8 3.1E-20 1.1E-24 124.9 10.3 79 3-82 13-98 (100)
52 2e5h_A Zinc finger CCHC-type a 99.8 3.3E-20 1.1E-24 123.2 10.3 74 4-78 13-94 (94)
53 1x4h_A RNA-binding protein 28; 99.8 4.6E-20 1.6E-24 126.1 11.2 80 3-83 11-104 (111)
54 2wbr_A GW182, gawky, LD47780P; 99.8 1.4E-20 4.7E-25 123.4 8.2 73 5-78 5-79 (89)
55 2cpf_A RNA binding motif prote 99.8 3.2E-20 1.1E-24 124.3 10.2 79 4-83 2-91 (98)
56 2cph_A RNA binding motif prote 99.8 4.7E-20 1.6E-24 125.3 11.1 80 3-83 11-100 (107)
57 2x1f_A MRNA 3'-END-processing 99.8 3.2E-20 1.1E-24 124.0 10.0 75 6-81 1-83 (96)
58 2do0_A HnRNP M, heterogeneous 99.8 1.1E-19 3.6E-24 125.0 12.8 79 3-82 11-96 (114)
59 2dhg_A TRNA selenocysteine ass 99.8 1.9E-20 6.6E-25 126.6 8.8 80 3-83 5-93 (104)
60 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-20 4.3E-25 129.7 8.0 77 4-81 25-106 (111)
61 2div_A TRNA selenocysteine ass 99.8 2.1E-20 7.1E-25 125.4 8.6 79 2-81 4-95 (99)
62 1wi8_A EIF-4B, eukaryotic tran 99.8 6.8E-20 2.3E-24 124.1 11.1 77 4-83 12-97 (104)
63 1x4f_A Matrin 3; structural ge 99.8 1.3E-20 4.3E-25 129.8 7.4 78 4-82 22-104 (112)
64 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-20 1.3E-24 120.6 9.4 75 3-78 8-85 (85)
65 3md1_A Nuclear and cytoplasmic 99.8 4E-20 1.4E-24 120.0 9.3 74 7-81 1-82 (83)
66 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-20 1.3E-24 125.6 9.6 80 3-83 9-99 (106)
67 1p27_B RNA-binding protein 8A; 99.8 2.9E-20 9.8E-25 126.2 9.0 77 5-82 21-105 (106)
68 1x4g_A Nucleolysin TIAR; struc 99.8 4.7E-20 1.6E-24 126.0 10.1 79 4-83 22-102 (109)
69 1oo0_B CG8781-PA, drosophila Y 99.8 4.4E-20 1.5E-24 126.2 9.9 77 5-82 24-108 (110)
70 2cpe_A RNA-binding protein EWS 99.8 4.7E-20 1.6E-24 126.6 10.0 80 3-83 11-106 (113)
71 1nu4_A U1A RNA binding domain; 99.8 4.7E-20 1.6E-24 123.2 9.6 79 2-81 3-90 (97)
72 2lxi_A RNA-binding protein 10; 99.8 1E-20 3.4E-25 125.6 6.0 75 7-82 1-85 (91)
73 3ulh_A THO complex subunit 4; 99.8 5.7E-20 1.9E-24 124.9 9.6 75 3-78 25-106 (107)
74 2fc9_A NCL protein; structure 99.8 8.8E-20 3E-24 122.8 10.4 79 3-82 11-93 (101)
75 2cqc_A Arginine/serine-rich sp 99.8 2.9E-20 9.8E-25 123.6 7.8 76 3-79 11-94 (95)
76 2err_A Ataxin-2-binding protei 99.8 5.1E-20 1.7E-24 126.0 9.1 77 3-80 25-107 (109)
77 2kxn_B Transformer-2 protein h 99.8 2.7E-20 9.1E-25 131.3 7.9 79 3-82 42-128 (129)
78 2dng_A Eukaryotic translation 99.8 1.2E-19 4E-24 122.7 10.8 77 4-83 12-96 (103)
79 2e5j_A Methenyltetrahydrofolat 99.8 4E-20 1.4E-24 123.8 8.3 76 4-81 16-95 (97)
80 2a3j_A U1 small nuclear ribonu 99.8 6.7E-20 2.3E-24 128.9 9.7 78 3-81 25-111 (127)
81 2la4_A Nuclear and cytoplasmic 99.8 3.4E-20 1.2E-24 124.9 7.4 75 4-79 24-100 (101)
82 2cpx_A Hypothetical protein FL 99.8 7.3E-20 2.5E-24 125.9 9.2 80 4-84 22-109 (115)
83 2cpi_A CCR4-NOT transcription 99.8 5.9E-20 2E-24 126.0 8.7 77 4-81 12-102 (111)
84 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.9E-20 2.3E-24 134.1 9.5 78 5-83 70-155 (165)
85 2fc8_A NCL protein; structure 99.8 1.3E-19 4.6E-24 122.1 10.0 79 3-82 11-94 (102)
86 2la6_A RNA-binding protein FUS 99.8 9.4E-20 3.2E-24 122.3 9.0 75 3-78 9-99 (99)
87 1x5p_A Negative elongation fac 99.8 3.9E-19 1.3E-23 118.9 11.7 77 4-83 12-90 (97)
88 2khc_A Testis-specific RNP-typ 99.8 9.5E-20 3.3E-24 126.0 8.9 74 4-78 37-118 (118)
89 2lkz_A RNA-binding protein 5; 99.8 5.4E-20 1.8E-24 123.2 7.4 76 3-79 5-94 (95)
90 2dh8_A DAZ-associated protein 99.8 4.9E-20 1.7E-24 124.9 7.2 79 3-83 12-98 (105)
91 2ywk_A Putative RNA-binding pr 99.8 5.9E-20 2E-24 122.2 7.5 76 3-79 12-94 (95)
92 3ns6_A Eukaryotic translation 99.8 3.7E-20 1.3E-24 124.8 6.5 76 4-80 3-93 (100)
93 1whx_A Hypothetical protein ri 99.8 1.1E-19 3.8E-24 124.8 8.9 75 6-81 9-85 (111)
94 2hvz_A Splicing factor, argini 99.8 6.1E-20 2.1E-24 123.6 7.5 74 8-82 1-77 (101)
95 2jrs_A RNA-binding protein 39; 99.8 1.1E-19 3.9E-24 124.2 8.9 78 3-81 22-107 (108)
96 2cq2_A Hypothetical protein LO 99.8 1.8E-19 6.1E-24 124.2 9.3 79 3-82 21-108 (114)
97 2cqp_A RNA-binding protein 12; 99.8 8.2E-20 2.8E-24 122.3 7.0 76 4-80 12-95 (98)
98 3p5t_L Cleavage and polyadenyl 99.8 2E-20 6.7E-25 123.7 3.9 75 8-83 2-86 (90)
99 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-19 9.1E-24 123.2 9.5 78 3-81 4-86 (115)
100 2rs2_A Musashi-1, RNA-binding 99.8 4.1E-19 1.4E-23 121.5 10.3 79 3-83 21-107 (109)
101 1fjc_A Nucleolin RBD2, protein 99.8 1.3E-19 4.6E-24 120.8 7.6 79 3-82 12-93 (96)
102 2dis_A Unnamed protein product 99.8 3.4E-19 1.2E-23 121.5 9.5 79 3-82 4-94 (109)
103 2kt5_A RNA and export factor-b 99.8 5.1E-19 1.7E-23 123.5 10.4 79 4-83 32-117 (124)
104 3ucg_A Polyadenylate-binding p 99.8 2.9E-19 1E-23 117.3 8.7 74 6-81 5-86 (89)
105 1s79_A Lupus LA protein; RRM, 99.8 1.9E-19 6.4E-24 122.2 7.7 74 4-79 8-88 (103)
106 1x4b_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 122.1 9.8 74 7-82 27-108 (116)
107 2dgw_A Probable RNA-binding pr 99.8 6.8E-19 2.3E-23 116.3 10.0 76 3-81 6-88 (91)
108 2ek1_A RNA-binding protein 12; 99.8 7.2E-20 2.5E-24 121.8 5.2 75 4-79 12-94 (95)
109 3zzy_A Polypyrimidine tract-bi 99.8 4.2E-19 1.4E-23 125.0 9.4 75 6-81 27-107 (130)
110 2diu_A KIAA0430 protein; struc 99.8 2.6E-19 8.8E-24 118.5 7.6 78 2-82 3-86 (96)
111 2lea_A Serine/arginine-rich sp 99.8 1.5E-19 5.1E-24 128.4 6.9 79 4-83 44-130 (135)
112 2kn4_A Immunoglobulin G-bindin 99.8 7.1E-19 2.4E-23 127.4 10.7 78 5-83 68-153 (158)
113 2nlw_A Eukaryotic translation 99.8 3.8E-19 1.3E-23 120.8 8.4 75 5-80 13-100 (105)
114 3s7r_A Heterogeneous nuclear r 99.8 6.7E-19 2.3E-23 115.3 9.3 73 3-77 7-87 (87)
115 1wg5_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 117.4 11.5 76 4-81 12-95 (104)
116 3n9u_C Cleavage and polyadenyl 99.8 4.1E-19 1.4E-23 129.1 8.8 74 6-80 54-137 (156)
117 1sjr_A Polypyrimidine tract-bi 99.8 4.3E-19 1.5E-23 129.4 8.8 75 6-81 45-125 (164)
118 2e5g_A U6 snRNA-specific termi 99.8 1.3E-18 4.5E-23 115.7 10.5 78 3-82 4-84 (94)
119 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4.1E-23 117.6 10.4 76 4-82 12-95 (103)
120 1p1t_A Cleavage stimulation fa 99.8 2.8E-19 9.5E-24 120.8 7.2 77 5-82 6-90 (104)
121 1wez_A HnRNP H', FTP-3, hetero 99.8 1E-18 3.5E-23 118.3 9.8 76 3-81 11-93 (102)
122 2i2y_A Fusion protein consists 99.8 4.6E-19 1.6E-23 127.5 8.5 77 4-81 70-149 (150)
123 2cq4_A RNA binding motif prote 99.8 4E-19 1.4E-23 122.2 7.6 73 7-81 25-105 (114)
124 1wg1_A KIAA1579 protein, homol 99.8 5.8E-19 2E-23 116.1 7.9 75 5-81 3-79 (88)
125 2jwn_A Embryonic polyadenylate 99.8 9.6E-19 3.3E-23 121.9 9.5 74 7-82 36-117 (124)
126 1x5o_A RNA binding motif, sing 99.8 1.3E-18 4.5E-23 119.5 9.9 76 4-80 22-112 (114)
127 2e5i_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 122.0 9.7 76 5-81 21-103 (124)
128 1x4e_A RNA binding motif, sing 99.8 1.2E-19 4.1E-24 118.4 4.4 73 4-77 2-82 (85)
129 2cpy_A RNA-binding protein 12; 99.8 7.8E-19 2.7E-23 121.0 8.6 76 4-81 12-95 (114)
130 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-18 3.6E-23 123.8 9.6 73 4-77 60-140 (140)
131 2m2b_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 125.8 6.4 77 4-82 20-110 (131)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.5E-19 1.6E-23 119.4 6.9 75 4-81 16-99 (100)
133 1fj7_A Nucleolin RBD1, protein 99.8 1.3E-19 4.3E-24 122.1 3.6 77 4-82 14-97 (101)
134 2krb_A Eukaryotic translation 99.8 7.2E-19 2.5E-23 113.8 6.9 67 7-74 1-80 (81)
135 3egn_A RNA-binding protein 40; 99.8 6.5E-19 2.2E-23 125.8 7.3 79 4-83 42-133 (143)
136 2db1_A Heterogeneous nuclear r 99.8 7.9E-19 2.7E-23 121.8 7.4 75 4-80 14-98 (118)
137 2f3j_A RNA and export factor b 99.8 1.2E-18 4.3E-23 129.0 8.9 77 4-81 85-168 (177)
138 3q2s_C Cleavage and polyadenyl 99.8 7.2E-19 2.5E-23 135.2 7.4 74 6-80 67-150 (229)
139 2mss_A Protein (musashi1); RNA 99.8 5.9E-19 2E-23 112.4 5.8 67 9-77 1-75 (75)
140 1wel_A RNA-binding protein 12; 99.8 3.5E-19 1.2E-23 124.4 5.1 75 4-80 22-104 (124)
141 2lcw_A RNA-binding protein FUS 99.6 3.6E-20 1.2E-24 127.9 0.0 79 3-82 3-97 (116)
142 2bz2_A Negative elongation fac 99.8 2E-18 7E-23 120.3 8.9 76 4-82 36-113 (121)
143 2e44_A Insulin-like growth fac 99.8 2E-18 7E-23 115.0 8.5 76 5-81 13-93 (96)
144 3tyt_A Heterogeneous nuclear r 99.8 3.4E-18 1.2E-22 129.3 10.3 76 5-81 2-81 (205)
145 2ki2_A SS-DNA binding protein 99.8 3.3E-19 1.1E-23 117.5 4.0 73 8-82 2-82 (90)
146 2hgl_A HNRPF protein, heteroge 99.8 1.4E-18 4.9E-23 123.5 6.9 75 4-80 41-125 (136)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.3E-19 3.2E-23 111.9 5.4 68 8-77 1-76 (77)
148 1wf0_A TDP-43, TAR DNA-binding 99.8 2.6E-18 8.9E-23 112.8 7.7 76 4-82 2-80 (88)
149 3d2w_A TAR DNA-binding protein 99.7 6.6E-18 2.2E-22 111.5 9.4 75 3-82 7-86 (89)
150 2hgn_A Heterogeneous nuclear r 99.7 7.6E-19 2.6E-23 125.4 4.9 75 5-82 44-125 (139)
151 2dnn_A RNA-binding protein 12; 99.7 2.8E-18 9.6E-23 117.6 7.2 71 7-80 16-93 (109)
152 2hzc_A Splicing factor U2AF 65 99.7 4.6E-18 1.6E-22 111.1 7.9 70 4-75 3-85 (87)
153 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-18 5.2E-23 118.2 5.4 76 3-80 7-92 (107)
154 4f02_A Polyadenylate-binding p 99.7 1.1E-17 3.7E-22 126.8 9.2 76 4-80 12-95 (213)
155 3u1l_A PRE-mRNA-splicing facto 99.7 7.8E-18 2.7E-22 130.0 7.7 78 4-82 131-231 (240)
156 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.9E-22 125.7 9.1 74 6-80 102-181 (213)
157 1b7f_A Protein (SXL-lethal pro 99.7 3.6E-17 1.2E-21 118.5 10.2 75 6-81 2-84 (168)
158 1iqt_A AUF1, heterogeneous nuc 99.7 3.4E-18 1.2E-22 108.8 4.2 67 9-77 1-75 (75)
159 3md3_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 118.2 9.5 75 4-79 84-166 (166)
160 2hgm_A HNRPF protein, heteroge 99.7 2.3E-17 8E-22 115.7 7.7 74 4-80 39-121 (126)
161 2qfj_A FBP-interacting repress 99.7 4.9E-17 1.7E-21 122.4 10.0 78 5-83 123-208 (216)
162 1fxl_A Paraneoplastic encephal 99.7 5E-17 1.7E-21 117.3 9.5 75 6-81 1-83 (167)
163 2dit_A HIV TAT specific factor 99.7 1.7E-16 5.7E-21 108.9 11.2 78 3-81 11-103 (112)
164 2dha_A FLJ20171 protein; RRM d 99.7 1.4E-17 4.7E-22 116.5 5.6 74 5-80 21-105 (123)
165 3pgw_A U1-A; protein-RNA compl 99.7 8.2E-17 2.8E-21 126.3 10.6 75 4-79 204-282 (282)
166 3pgw_A U1-A; protein-RNA compl 99.7 1E-16 3.4E-21 125.8 11.0 78 3-81 5-91 (282)
167 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.5E-22 112.3 4.9 75 5-82 7-88 (102)
168 1l3k_A Heterogeneous nuclear r 99.7 7.8E-17 2.7E-21 119.6 9.4 78 5-84 102-187 (196)
169 2yh0_A Splicing factor U2AF 65 99.7 7.5E-17 2.6E-21 119.8 8.8 77 5-82 112-196 (198)
170 2adc_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 123.7 8.2 77 4-81 31-111 (229)
171 3md3_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 115.6 8.5 74 8-82 1-81 (166)
172 2dnl_A Cytoplasmic polyadenyla 99.7 9.4E-17 3.2E-21 110.4 7.2 71 3-77 4-85 (114)
173 2g4b_A Splicing factor U2AF 65 99.7 1.3E-16 4.6E-21 116.0 8.1 72 5-77 92-171 (172)
174 1fje_B Nucleolin RBD12, protei 99.7 1.5E-16 5.1E-21 116.3 8.4 75 5-80 97-174 (175)
175 2adc_A Polypyrimidine tract-bi 99.7 2.7E-16 9.3E-21 120.3 10.1 75 5-80 149-228 (229)
176 1l3k_A Heterogeneous nuclear r 99.7 1.7E-16 5.8E-21 117.7 8.7 77 3-81 9-93 (196)
177 2cjk_A Nuclear polyadenylated 99.7 9.4E-17 3.2E-21 116.2 6.9 73 6-80 86-166 (167)
178 1qm9_A Polypyrimidine tract-bi 99.7 1.9E-16 6.3E-21 118.1 8.5 75 5-80 118-197 (198)
179 2pe8_A Splicing factor 45; RRM 99.7 3.8E-16 1.3E-20 106.2 8.9 75 4-79 5-93 (105)
180 1b7f_A Protein (SXL-lethal pro 99.7 4.3E-16 1.5E-20 112.7 9.3 72 5-77 87-168 (168)
181 3nmr_A Cugbp ELAV-like family 99.7 2.7E-16 9.2E-21 114.4 8.2 73 5-78 93-175 (175)
182 2qfj_A FBP-interacting repress 99.6 3.9E-16 1.3E-20 117.4 8.6 74 6-80 27-108 (216)
183 1qm9_A Polypyrimidine tract-bi 99.6 2.1E-16 7.3E-21 117.8 7.1 75 6-81 2-80 (198)
184 3sde_A Paraspeckle component 1 99.6 4.3E-16 1.5E-20 121.5 8.6 74 5-79 20-95 (261)
185 2voo_A Lupus LA protein; RNA-b 99.6 7.9E-16 2.7E-20 115.3 8.7 71 7-79 109-186 (193)
186 1fxl_A Paraneoplastic encephal 99.6 8.8E-16 3E-20 110.7 8.5 72 5-77 86-167 (167)
187 3tht_A Alkylated DNA repair pr 99.6 1.2E-15 4E-20 123.5 9.5 75 3-78 14-97 (345)
188 2g4b_A Splicing factor U2AF 65 99.6 9.7E-16 3.3E-20 111.4 8.3 75 5-81 2-89 (172)
189 3tyt_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 116.9 7.2 72 5-77 121-204 (205)
190 3nmr_A Cugbp ELAV-like family 99.6 1.7E-15 5.9E-20 110.1 8.8 75 6-81 2-89 (175)
191 2yh0_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 112.8 8.4 75 5-81 2-89 (198)
192 3smz_A Protein raver-1, ribonu 99.6 2.6E-15 8.8E-20 117.9 9.2 78 4-82 181-266 (284)
193 2ghp_A U4/U6 snRNA-associated 99.6 2.5E-15 8.5E-20 118.4 9.0 75 4-80 207-291 (292)
194 2cjk_A Nuclear polyadenylated 99.6 1.9E-15 6.4E-20 109.3 7.6 71 6-79 2-80 (167)
195 1fje_B Nucleolin RBD12, protei 99.6 3.9E-16 1.3E-20 114.0 3.7 77 3-81 9-92 (175)
196 3smz_A Protein raver-1, ribonu 99.6 5.3E-15 1.8E-19 116.1 10.2 72 5-78 20-93 (284)
197 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.6E-14 5.3E-19 97.3 11.0 75 6-83 9-93 (100)
198 2j8a_A Histone-lysine N-methyl 99.6 4E-15 1.4E-19 103.9 6.3 70 8-78 3-94 (136)
199 3v4m_A Splicing factor U2AF 65 99.6 1.9E-14 6.5E-19 97.7 9.0 77 4-80 2-97 (105)
200 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-14 4.2E-19 114.4 8.8 76 6-82 116-199 (292)
201 3s6e_A RNA-binding protein 39; 99.5 4.1E-14 1.4E-18 97.4 9.7 76 3-79 3-92 (114)
202 3ue2_A Poly(U)-binding-splicin 99.5 5.1E-14 1.7E-18 97.6 8.7 75 5-79 18-108 (118)
203 1jmt_A Splicing factor U2AF 35 99.5 4.1E-15 1.4E-19 100.9 2.8 65 12-77 20-103 (104)
204 3sde_A Paraspeckle component 1 99.5 2.3E-14 8E-19 111.6 7.4 76 5-81 94-180 (261)
205 2dnr_A Synaptojanin-1; RRM dom 99.5 1.7E-13 5.9E-18 89.8 8.7 79 3-83 3-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.5 4.7E-13 1.6E-17 92.8 10.4 76 2-78 13-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 1.2E-11 4.2E-16 81.4 4.5 73 4-78 12-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.2E-09 4E-14 82.9 6.7 60 20-79 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 3.1E-08 1.1E-12 66.6 7.6 69 6-75 20-95 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.4 1E-05 3.4E-10 53.8 11.1 76 3-80 4-84 (104)
211 1wey_A Calcipressin 1; structu 98.3 1.4E-06 4.8E-11 58.1 6.8 74 6-80 4-84 (104)
212 1whv_A Poly(A)-specific ribonu 98.1 1.8E-05 6E-10 52.1 7.5 55 7-63 16-70 (100)
213 1wwh_A Nucleoporin 35, nucleop 98.0 1.8E-05 6.1E-10 54.1 7.4 69 6-77 23-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.8 1.9E-05 6.4E-10 52.1 4.4 54 8-63 7-60 (101)
215 3p3d_A Nucleoporin 53; structu 97.7 8.4E-05 2.9E-09 51.5 5.7 71 5-78 5-97 (132)
216 1uw4_A UPF3X; nonsense mediate 97.5 0.0004 1.4E-08 45.2 6.9 70 8-78 2-86 (91)
217 2l08_A Regulator of nonsense t 97.0 0.0041 1.4E-07 40.8 7.3 71 7-78 9-94 (97)
218 3pq1_A Poly(A) RNA polymerase; 96.8 0.00043 1.5E-08 57.8 1.9 53 7-61 53-108 (464)
219 2i2y_A Fusion protein consists 96.2 0.00058 2E-08 48.0 -0.5 38 41-79 12-50 (150)
220 2g0c_A ATP-dependent RNA helic 95.7 0.018 6.2E-07 35.7 4.8 69 9-78 2-75 (76)
221 3d45_A Poly(A)-specific ribonu 95.6 0.033 1.1E-06 47.1 7.2 56 7-64 440-495 (507)
222 2kn4_A Immunoglobulin G-bindin 95.2 0.0061 2.1E-07 42.9 1.5 25 41-65 12-36 (158)
223 4eyt_A Telomerase associated p 93.4 0.56 1.9E-05 30.2 7.5 71 4-75 9-86 (129)
224 3pgw_S U1-70K; protein-RNA com 88.9 1.1 3.8E-05 36.9 6.9 23 49-73 148-170 (437)
225 3ts2_A Protein LIN-28 homolog 81.0 0.41 1.4E-05 33.6 0.7 29 22-50 1-29 (148)
226 4e8u_A Putative uncharacterize 77.2 3.6 0.00012 29.5 4.6 50 9-59 14-80 (172)
227 3lpe_A Putative transcription 68.7 17 0.00057 23.0 5.9 56 8-65 10-73 (92)
228 3fry_A Probable copper-exporti 63.8 12 0.00043 21.6 4.4 53 7-61 6-60 (73)
229 2e5p_A Protein PHF1, PHD finge 58.9 5.8 0.0002 23.7 2.0 19 33-51 28-46 (68)
230 2cu1_A Mitogen-activated prote 58.1 35 0.0012 22.1 5.8 64 17-81 25-89 (103)
231 1opz_A Potential copper-transp 56.7 24 0.00082 19.7 6.5 60 1-61 1-66 (76)
232 2m0o_A PHD finger protein 1; t 54.5 7.4 0.00025 23.9 2.0 20 33-52 45-64 (79)
233 3dxs_X Copper-transporting ATP 49.0 35 0.0012 19.4 5.3 53 8-61 4-62 (74)
234 3h7h_B Transcription elongatio 48.3 25 0.00086 22.9 4.1 33 34-66 40-75 (106)
235 2eqj_A Metal-response element- 48.3 11 0.00037 22.5 2.0 19 33-51 32-50 (66)
236 4a4j_A Pacszia, cation-transpo 46.2 23 0.00079 19.8 3.4 53 8-61 4-61 (69)
237 2e5q_A PHD finger protein 19; 44.0 4.9 0.00017 23.7 0.0 19 33-51 26-44 (63)
238 2exu_A Transcription initiatio 42.5 26 0.00088 25.7 3.7 33 35-67 139-174 (200)
239 2lsl_A Telomerase associated p 48.4 5.3 0.00018 25.9 0.0 23 41-63 76-98 (137)
240 2npt_B Mitogen-activated prote 42.1 34 0.0012 21.9 3.8 48 17-64 37-85 (100)
241 2lea_A Serine/arginine-rich sp 40.3 5.9 0.0002 26.6 0.0 27 43-69 5-31 (135)
242 2jrh_A Mitogen-activated prote 40.1 38 0.0013 21.4 3.7 62 17-79 21-83 (94)
243 2g9o_A Copper-transporting ATP 38.6 63 0.0021 19.3 4.9 54 8-62 5-64 (90)
244 4hcz_A PHD finger protein 1; p 38.1 20 0.00069 20.7 2.0 20 33-52 22-41 (58)
245 3j21_T 50S ribosomal protein L 37.5 59 0.002 20.3 4.4 43 19-61 33-82 (86)
246 2c60_A Human mitogen-activated 36.9 37 0.0013 22.1 3.4 48 17-64 48-96 (111)
247 1yg0_A COP associated protein; 36.3 51 0.0017 17.6 5.4 52 9-61 4-60 (66)
248 2k5n_A Putative cold-shock pro 33.3 24 0.00084 21.3 2.0 46 33-79 5-53 (74)
249 2xmw_A PACS-N, cation-transpor 32.9 62 0.0021 17.5 5.5 53 8-61 5-62 (71)
250 3swz_A Steroid 17-alpha-hydrox 32.6 78 0.0027 25.3 5.6 58 8-68 15-76 (494)
251 2kcm_A Cold shock domain famil 31.5 28 0.00094 21.1 2.0 47 33-79 3-54 (74)
252 2l3m_A Copper-ION-binding prot 31.3 67 0.0023 17.5 5.4 54 8-62 7-66 (71)
253 2okq_A Hypothetical protein YB 31.3 80 0.0027 21.7 4.5 37 25-61 50-109 (141)
254 3fut_A Dimethyladenosine trans 31.1 39 0.0013 25.6 3.3 28 7-36 110-137 (271)
255 3aqq_A Calcium-regulated heat 30.8 26 0.00088 24.3 2.0 21 32-52 64-84 (147)
256 1y3j_A Copper-transporting ATP 30.4 75 0.0026 17.8 4.8 54 8-62 5-64 (77)
257 1aw0_A Menkes copper-transport 30.4 64 0.0022 17.6 3.6 53 9-62 6-64 (72)
258 2lfv_A Protein DAMX; cell divi 36.5 11 0.00037 24.7 0.0 46 20-66 34-88 (106)
259 2e7g_A Putative ribosome-bindi 30.2 79 0.0027 21.1 4.4 32 32-63 43-79 (129)
260 1g6p_A Cold shock protein TMCS 29.8 25 0.00085 20.6 1.6 19 33-51 3-21 (66)
261 1q8l_A Copper-transporting ATP 29.6 85 0.0029 18.1 7.2 54 8-62 11-70 (84)
262 3uzu_A Ribosomal RNA small sub 29.6 19 0.00067 27.4 1.4 31 7-38 114-144 (279)
263 1cpz_A Protein (COPZ); copper 29.6 70 0.0024 17.1 7.1 53 8-61 2-60 (68)
264 2yh5_A DAPX protein, BAMC; lip 29.4 68 0.0023 21.4 4.0 48 6-54 12-60 (127)
265 1c9o_A CSPB, cold-shock protei 29.1 32 0.0011 20.1 2.0 20 33-52 4-23 (66)
266 1p6t_A Potential copper-transp 28.3 1.2E+02 0.0042 19.6 5.9 53 9-62 77-135 (151)
267 2od0_A Hypothetical protein VP 28.3 37 0.0013 21.7 2.4 21 20-40 4-24 (105)
268 1osd_A MERP, hypothetical prot 27.9 78 0.0027 17.2 6.4 53 9-62 6-64 (72)
269 3cam_A Cold-shock domain famil 27.9 35 0.0012 20.0 2.0 19 33-51 4-22 (67)
270 1h95_A CSD, Y-box binding prot 27.5 28 0.00096 21.2 1.6 19 33-51 11-29 (79)
271 2ofg_X Zinc-transporting ATPas 27.4 1.2E+02 0.004 19.0 7.2 54 8-62 10-69 (111)
272 3cjk_B Copper-transporting ATP 27.3 85 0.0029 17.3 5.8 53 9-62 5-63 (75)
273 3a0j_A Cold shock protein; OB- 26.9 33 0.0011 20.6 1.8 20 33-52 4-23 (73)
274 3p8b_B Transcription antitermi 26.2 63 0.0022 22.0 3.5 31 35-65 33-66 (152)
275 1kvi_A Copper-transporting ATP 26.2 93 0.0032 17.4 5.9 54 8-62 10-69 (79)
276 3i2z_B RNA chaperone, negative 24.9 42 0.0014 19.9 2.0 22 31-52 6-27 (71)
277 3u5e_X 60S ribosomal protein L 24.9 90 0.0031 21.5 3.9 42 19-60 89-137 (142)
278 2kt2_A Mercuric reductase; nme 24.9 90 0.0031 16.8 5.9 52 9-61 3-59 (69)
279 2cfx_A HTH-type transcriptiona 24.4 1.6E+02 0.0053 19.4 7.1 44 21-64 77-124 (144)
280 2gu3_A YPMB protein; APC1927, 24.2 67 0.0023 21.7 3.2 28 12-40 68-98 (136)
281 2lju_A Putative oxidoreductase 24.0 73 0.0025 20.8 3.2 21 45-66 62-82 (108)
282 1wvf_A 4-cresol dehydrogenase 23.7 34 0.0012 28.5 1.9 35 25-59 218-261 (520)
283 2ew9_A Copper-transporting ATP 23.7 1.1E+02 0.0039 19.6 4.4 52 9-61 83-140 (149)
284 1fvq_A Copper-transporting ATP 23.1 99 0.0034 16.7 4.7 53 9-62 5-62 (72)
285 4a17_R RPL23A, 60S ribosomal p 22.7 98 0.0034 21.5 3.8 42 19-60 97-145 (150)
286 2d8m_A DNA-repair protein XRCC 22.5 34 0.0012 22.7 1.4 53 6-60 24-78 (129)
287 3fle_A SE_1780 protein; struct 22.5 2.3E+02 0.0079 20.7 6.4 38 3-40 3-43 (249)
288 3tbg_A Cytochrome P450 2D6; mo 22.4 47 0.0016 26.3 2.5 48 11-60 20-70 (479)
289 2kyz_A Heavy metal binding pro 22.3 75 0.0026 17.3 2.8 51 9-61 4-56 (67)
290 1vq8_S 50S ribosomal protein L 22.2 90 0.0031 19.4 3.2 42 18-59 31-79 (85)
291 1wj6_A KIAA0049 protein, RSGI 22.2 1.3E+02 0.0043 19.4 4.0 64 9-78 27-94 (101)
292 3kiz_A Phosphoribosylformylgly 22.1 1E+02 0.0036 24.9 4.4 41 23-63 316-360 (394)
293 4id3_A DNA repair protein REV1 22.0 1.1E+02 0.0039 18.2 3.8 44 6-51 9-54 (92)
294 3l3e_A DNA topoisomerase 2-bin 21.7 1.1E+02 0.0036 19.3 3.7 53 6-60 17-74 (107)
295 1qyr_A KSGA, high level kasuga 21.7 60 0.002 24.2 2.8 27 8-35 91-117 (252)
296 3ulj_A LIN28B, DNA-binding pro 21.7 42 0.0014 21.1 1.6 17 33-49 11-27 (90)
297 1yjr_A Copper-transporting ATP 21.6 1.1E+02 0.0038 16.7 6.7 44 7-51 5-50 (75)
298 3iz5_X 60S ribosomal protein L 21.4 89 0.003 21.8 3.4 42 19-60 99-147 (152)
299 1ik9_C DNA ligase IV; DNA END 21.2 54 0.0018 16.9 1.7 15 18-32 20-34 (37)
300 4bby_A Alkyldihydroxyacetoneph 21.0 82 0.0028 27.1 3.8 46 17-62 352-408 (658)
301 3k9v_A 1,25-dihydroxyvitamin D 20.5 1.5E+02 0.0052 23.3 5.1 39 22-61 51-89 (482)
302 1mwy_A ZNTA; open-faced beta-s 20.3 1.2E+02 0.0041 16.6 6.9 53 9-62 6-62 (73)
303 3n9y_A Cholesterol SIDE-chain 20.2 1.6E+02 0.0054 23.3 5.2 38 23-61 36-73 (487)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.2e-22 Score=169.58 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |+.||+++|+++|++||.|+.|.| .+|||||+|.+.++|++||+.|||+.|.|+.|.|+|
T Consensus 100 ~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45689999999 899999999999999999999988 378999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
+++....
T Consensus 179 a~~~~~~ 185 (437)
T 3pgw_S 179 ERGRTVK 185 (437)
T ss_pred eCCCCCC
Confidence 9876543
No 2
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.89 E-value=2.6e-22 Score=135.94 Aligned_cols=82 Identities=26% Similarity=0.477 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|.|++++..
T Consensus 7 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 7 GMAKVKVLFVRNL-ANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCCEEEECC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3457799999999 899999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCC
Q 030662 83 ERD 85 (173)
Q Consensus 83 ~~~ 85 (173)
...
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 443
No 3
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=4.5e-22 Score=131.52 Aligned_cols=81 Identities=30% Similarity=0.473 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
....+.++|||+|| |.++++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++++.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 3 SGSSGMVKLFIGNL-PREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCSSCCEEEEEESC-CSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCCCeEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 45678899999999 89999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 030662 82 SE 83 (173)
Q Consensus 82 ~~ 83 (173)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 4
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.3e-22 Score=133.87 Aligned_cols=81 Identities=25% Similarity=0.559 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 2 ANQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
.+.++.++|||+|| |. .+++++|+++|++||.|..|.|++|||||+|.+.++|++||+.||+..|.|+.|.|++++..
T Consensus 5 ~~~~~~~~l~V~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 5 HNIPPKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ----CCEEEEEESS-TTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred ccCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45678999999999 88 99999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 030662 81 DSE 83 (173)
Q Consensus 81 ~~~ 83 (173)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 5
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=133.01 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeC-CeEEEEeCCHHHHHHHHHhcCCCeecC-----ceEEEEEee
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVD-----RVISVEYAL 78 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~i~g-----~~l~v~~a~ 78 (173)
...++|||+|| |+++++++|+++|++||+|..|.|.. |||||+|.+.++|++||+.||++.|.| +.|.|++|+
T Consensus 13 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45789999999 89999999999999999999999976 999999999999999999999999999 999999998
Q ss_pred cCC
Q 030662 79 KDD 81 (173)
Q Consensus 79 ~~~ 81 (173)
++.
T Consensus 92 ~~~ 94 (108)
T 1x4c_A 92 PRS 94 (108)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=133.45 Aligned_cols=73 Identities=22% Similarity=0.442 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
..++|||+|| |.++|+++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|+||
T Consensus 18 ~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4679999999 899999999999999999999988 3579999999999999999999999999999999999
Q ss_pred ec
Q 030662 78 LK 79 (173)
Q Consensus 78 ~~ 79 (173)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 7
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=129.36 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++++..
T Consensus 6 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 6 SGKASTKLHVGNI-SPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCCSSEEEEEESC-CSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 4567899999999 899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 030662 83 E 83 (173)
Q Consensus 83 ~ 83 (173)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=133.81 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=75.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 1 s~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
|.+..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 1 m~e~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 1 MVEADHPGKLFIGGL-NRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp CCTTCSCCEEEEECC-TTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 567888999999999 8999999999999999999999984 48999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 030662 74 VEYALKDDSE 83 (173)
Q Consensus 74 v~~a~~~~~~ 83 (173)
|++++++...
T Consensus 80 V~~a~~~~~~ 89 (116)
T 2fy1_A 80 VEQAKKPSFQ 89 (116)
T ss_dssp EEECCCSSCS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 9
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=128.96 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|.++++...
T Consensus 5 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 5 SSGNTWKIFVGNV-SAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SSCCSCCEEEESC-CTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 4567899999999 899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 030662 83 E 83 (173)
Q Consensus 83 ~ 83 (173)
.
T Consensus 84 ~ 84 (90)
T 2dnp_A 84 K 84 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.4e-21 Score=136.82 Aligned_cols=80 Identities=25% Similarity=0.481 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 19 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345779999999 8999999999999999999999983 7899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030662 76 YALKDDSER 84 (173)
Q Consensus 76 ~a~~~~~~~ 84 (173)
||+++....
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 999876543
No 11
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=129.15 Aligned_cols=78 Identities=31% Similarity=0.446 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccC--CCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY--GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~--G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..+.++|||+|| |..+++++|+++|++| |.|..|.+.++||||+|.+.++|++||+.||+..|.|+.|.|.|+++..
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 12 MSSVKILYVRNL-MLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp SSCCCEEEEESC-CTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred cCCcCEEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 456789999999 8999999999999999 9999999999999999999999999999999999999999999998765
Q ss_pred C
Q 030662 82 S 82 (173)
Q Consensus 82 ~ 82 (173)
.
T Consensus 91 ~ 91 (99)
T 2cpd_A 91 K 91 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=131.33 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.| .++||||+|.+.++|++||+.||+..|.|+.|.|+|+
T Consensus 18 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNL-PPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456789999999 899999999999999999999998 3689999999999999999999999999999999999
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
++...
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 13
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=128.90 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
.+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 10 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNL-SRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCC-CccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34567899999999 8999999999999999999999984 5899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030662 76 YALKDDSER 84 (173)
Q Consensus 76 ~a~~~~~~~ 84 (173)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999866543
No 14
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=127.52 Aligned_cols=81 Identities=31% Similarity=0.509 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESC-CTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999 8999999999999999999999984 78999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 030662 77 ALKDDSER 84 (173)
Q Consensus 77 a~~~~~~~ 84 (173)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99876543
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.4e-21 Score=127.10 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
....+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 3 SGSSGSGRLFVRNL-SYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCCCSCEEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 45678899999999 899999999999999999999998 358999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 030662 74 VEYALKDDSE 83 (173)
Q Consensus 74 v~~a~~~~~~ 83 (173)
|.+++++...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999987653
No 16
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=5e-21 Score=128.52 Aligned_cols=77 Identities=23% Similarity=0.555 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 3 NQRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
..++.++|||+|| |. ++++++|+++|++||.|..|.|++|||||+|.+.++|++|++.|||..|.|+.|.|++++..
T Consensus 18 ~~~~~~~l~V~nL-p~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNL-PLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESC-CSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4567899999999 87 99999999999999999999999999999999999999999999999999999999999764
No 17
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.85 E-value=3.9e-21 Score=131.61 Aligned_cols=76 Identities=20% Similarity=0.404 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 6 PTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 6 ~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
+.++|||+|| |.+ +++++|+++|++||.|..|.|.++||||+|.+.++|++||+.||+..|.|+.|.|++++....
T Consensus 26 ~~~~l~V~nl-~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNL-NTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSC-CCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4589999999 889 999999999999999999999999999999999999999999999999999999999986544
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=125.82 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 2 ~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 2 SSGSSGLYVGSL-HFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 467899999999 8999999999999999999999882 5799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
+++++...
T Consensus 81 ~a~~~~~~ 88 (95)
T 2dnz_A 81 HVTERLDG 88 (95)
T ss_dssp ESSCCCCC
T ss_pred EcccccCC
Confidence 99876543
No 19
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=129.70 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCe--ecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~l~v~~a~ 78 (173)
..+|+++|||+|| |..+++++|.++|++||.|..|.|. +|||||+|.+.++|++||+.|++.. |.|+.|.|+|++
T Consensus 17 ~~~ps~~l~V~NL-p~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGL-IDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4568999999999 8999999999999999999999884 8999999999999999999999875 789999999998
Q ss_pred cCC
Q 030662 79 KDD 81 (173)
Q Consensus 79 ~~~ 81 (173)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 20
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=127.98 Aligned_cols=80 Identities=24% Similarity=0.275 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEee-----CCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
...+.++|||+|| |+++++++|+ ++|++||+|..|.|. ++||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nL-~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 5 SSGNGADVQVSNI-DYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp CCSSCEEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4456789999999 8999999999 999999999999996 89999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 030662 74 VEYALKDDSE 83 (173)
Q Consensus 74 v~~a~~~~~~ 83 (173)
|++|++...+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=126.40 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+ ||+..|.|+.|.|
T Consensus 6 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGI-PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESC-CSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 4567899999999 899999999999999999999998 36899999999999999998 9999999999999
Q ss_pred EEeecCCCCC
Q 030662 75 EYALKDDSER 84 (173)
Q Consensus 75 ~~a~~~~~~~ 84 (173)
.+++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999776543
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=131.64 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..|.++|||+|| ++++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|+
T Consensus 3 ~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 568899999999 899999999999999999999988 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
++...
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 99654
No 23
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=127.77 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCC-eEEEEe-eCCeEEEEeCCHHHHHHHHHhcCC-CeecCceEEEEEee
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRI-RRNFAFVQFETQEEATKALESTDR-SKLVDRVISVEYAL 78 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~~-~~g~afV~f~~~~~a~~A~~~l~g-~~i~g~~l~v~~a~ 78 (173)
....+.++|||+|| |.++++++|+++|++||. |..+.+ .+|||||+|.+.++|++||+.||+ ..|.|+.|.|++++
T Consensus 3 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 3 SGSSGMNKLYIGNL-SPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCCCEEEECC-CTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 45677899999999 899999999999999999 665555 699999999999999999999999 99999999999998
Q ss_pred cCCCC
Q 030662 79 KDDSE 83 (173)
Q Consensus 79 ~~~~~ 83 (173)
++...
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 24
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=130.07 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCC--CeecCceEEEEEee
Q 030662 4 QRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 78 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~v~~a~ 78 (173)
..+.++|||+|| |+ .+++++|+++|++||.|..|.|. ++||||+|++.++|++||+.||+ ..|.|+.|.|++|+
T Consensus 12 ~~p~~~l~V~nL-p~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDF-QRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESC-CCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCC-CCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 457899999999 89 99999999999999999999985 58999999999999999999886 45999999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
..+.
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=127.98 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4567899999999 899999999999999999999998 3589999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 26
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=129.08 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCC--eecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRS--KLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~--~i~g~~l~v~~a~ 78 (173)
..+|+++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|++. .|.|+.|.|+|++
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGL-CESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESC-CSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3567899999999 8999999999999999999999884 799999999999999999988754 5899999999998
Q ss_pred cCCCCC
Q 030662 79 KDDSER 84 (173)
Q Consensus 79 ~~~~~~ 84 (173)
.+....
T Consensus 90 ~~~~~~ 95 (104)
T 1wex_A 90 SKRITR 95 (104)
T ss_dssp SSSCCC
T ss_pred CccccC
Confidence 766543
No 27
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=127.96 Aligned_cols=80 Identities=23% Similarity=0.463 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNL-DDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999 8999999999999999999999885 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9887654
No 28
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=127.94 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~v~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGL-SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESC-CTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3567899999999 899999999999999999999998 2579999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
+++++....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999987643
No 29
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=126.64 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhc--CCCeecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST--DRSKLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l--~g~~i~g~~l~v~~a~ 78 (173)
..+++++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.| ++..|.|+.|.|+|++
T Consensus 11 ~~~p~~~l~V~nL-p~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKL-PGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 3467899999999 8999999999999999999999885 699999999999999999977 4678999999999998
Q ss_pred cCCCCC
Q 030662 79 KDDSER 84 (173)
Q Consensus 79 ~~~~~~ 84 (173)
.+..+.
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 766543
No 30
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=128.68 Aligned_cols=80 Identities=34% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNL-TYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4567899999999 8999999999999999999999883 689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
++++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876543
No 31
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.85 E-value=3.6e-21 Score=133.07 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeC-CeEEEEeCCHHHHHHHHHhcCCCeecCce-----EEEEEeec
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR-NFAFVQFETQEEATKALESTDRSKLVDRV-----ISVEYALK 79 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~i~g~~-----l~v~~a~~ 79 (173)
..++|||+|| |+++++++|+++|++||+|..|.|.. |||||+|.+.++|++||+.||+++|+|+. |+|..+.+
T Consensus 15 ~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGL-PPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEEC-CSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4689999999 89999999999999999999999976 99999999999999999999999999988 66665554
No 32
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.9e-21 Score=128.43 Aligned_cols=81 Identities=27% Similarity=0.503 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESC-CSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3567899999999 899999999999999999999988 3689999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 030662 75 EYALKDDSER 84 (173)
Q Consensus 75 ~~a~~~~~~~ 84 (173)
.|++++....
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998876543
No 33
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.8e-21 Score=127.99 Aligned_cols=79 Identities=25% Similarity=0.494 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNL-SEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESC-CTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 557899999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
|++++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.5e-21 Score=126.55 Aligned_cols=79 Identities=27% Similarity=0.528 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEE-Ee--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
..+.++|||+|| |.++++++|+++|++||.|..| .| .+|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 2 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 2 SSGSSGIFIGNL-DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp CSCCCEEEEECC-CTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 457899999999 8999999999999999999888 77 2689999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
+++.++...
T Consensus 81 ~~a~~~~~~ 89 (96)
T 1x5t_A 81 SYAFKKDSK 89 (96)
T ss_dssp EESCCCCCC
T ss_pred EEecccCCC
Confidence 999876543
No 35
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-21 Score=131.25 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcC--CCeecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTD--RSKLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~--g~~i~g~~l~v~~a~ 78 (173)
...+.++|||+|| |+.+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|+ +..|.|+.|.|+||+
T Consensus 12 ~~~~~~~LfV~nL-p~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSC-CTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4678899999999 8999999999999999999999985 7999999999999999999886 478999999999998
Q ss_pred cCCCC
Q 030662 79 KDDSE 83 (173)
Q Consensus 79 ~~~~~ 83 (173)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76544
No 36
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=9.4e-21 Score=137.31 Aligned_cols=78 Identities=23% Similarity=0.410 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||+|..|.| .++||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 36 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNL-SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356799999999 899999999999999999999998 35799999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
||++...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.6e-20 Score=128.27 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 11 DTSNHFHVFVGDL-SPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CSTTCEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3457889999999 8999999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 030662 75 EYALKDDSERD 85 (173)
Q Consensus 75 ~~a~~~~~~~~ 85 (173)
.|++++.....
T Consensus 90 ~~a~~~~~~~~ 100 (115)
T 2dgo_A 90 NWATRKPPAPK 100 (115)
T ss_dssp EESSCCCCCSC
T ss_pred EEccCCCCCCc
Confidence 99987765443
No 38
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=6.2e-21 Score=130.54 Aligned_cols=79 Identities=30% Similarity=0.566 Sum_probs=73.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|.+|||||+|.+.++|++|++.|||..|.|+.|.|+++++...
T Consensus 27 ~~~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 27 GELSNTRLFVRPF-PLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp -CCSCSEEEECSS-CTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 3457899999999 899999999999999999999999999999999999999999999999999999999999987654
No 39
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=126.21 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeec--CceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLV--DRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~--g~~l~v~~a~ 78 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|. |+.|.|+|++
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGL-GPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECC-CSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3467899999999 8999999999999999999999995 679999999999999999999999999 9999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=133.63 Aligned_cols=79 Identities=23% Similarity=0.451 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 39 ~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYI-PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESC-STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456789999999 8999999999999999999999882 6899999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
++++....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=122.39 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe---------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|+
T Consensus 2 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRL-TRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 35689999999 899999999999999999999988 57899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
++.++.+
T Consensus 81 ~a~~~~~ 87 (88)
T 4a8x_A 81 AVLAPWP 87 (88)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=9e-21 Score=130.99 Aligned_cols=76 Identities=26% Similarity=0.476 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
...+|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|.++++
T Consensus 4 ~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCC-CCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4578999999 899999999999999999999988 368999999999999999999999999999999999986
Q ss_pred CCC
Q 030662 80 DDS 82 (173)
Q Consensus 80 ~~~ 82 (173)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=2.1e-20 Score=121.86 Aligned_cols=75 Identities=29% Similarity=0.561 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 3 ~~~~~~~l~V~nl-~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 3 MATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCCSSEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3568899999999 899999999999999999999988 4789999999999999999999999999999999
Q ss_pred EEee
Q 030662 75 EYAL 78 (173)
Q Consensus 75 ~~a~ 78 (173)
+||+
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 44
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=125.56 Aligned_cols=79 Identities=29% Similarity=0.425 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..+.++|||+|| |..+++++|+++|++||+|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|.|.|++++.
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNL-PPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 456789999999 8999999999999999999999985 6999999999999999999999999999999999998765
Q ss_pred CC
Q 030662 82 SE 83 (173)
Q Consensus 82 ~~ 83 (173)
..
T Consensus 91 ~~ 92 (99)
T 2cpj_A 91 SL 92 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 45
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=1.6e-20 Score=124.32 Aligned_cols=80 Identities=26% Similarity=0.367 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 4 GSSGACQIFVRNL-PFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSSCCEEEECSC-CTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999 8999999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
+++....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=130.79 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCC--CeecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~v~~a~ 78 (173)
..+++++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|++.++|++||+.|++ ..|.|+.|.|+||+
T Consensus 27 ~~~ps~~LfVgNL-p~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 27 AGVPSRVIHIRKL-PIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CSSCCSEEEEESC-CTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 3567899999999 8999999999999999999999985 79999999999999999998874 68999999999998
Q ss_pred cCCCCC
Q 030662 79 KDDSER 84 (173)
Q Consensus 79 ~~~~~~ 84 (173)
.+..+.
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 776543
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=123.23 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+..+|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+..|.|+.|.|+
T Consensus 3 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 3 LGSHFHVFVGDL-SPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp ---CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCceEEEEeCC-CCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 457789999999 8999999999999999999999882 5799999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
|++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99865
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=3.2e-20 Score=125.78 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecC---ceEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVD---RVIS 73 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g---~~l~ 73 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.| +.|.
T Consensus 12 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGML-NKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 356899999999 8999999999999999999999984 6899999999999999999999999988 9999
Q ss_pred EEEeecCCCC
Q 030662 74 VEYALKDDSE 83 (173)
Q Consensus 74 v~~a~~~~~~ 83 (173)
|.|++++...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999987654
No 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.6e-20 Score=125.67 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|++ .|.|+.|.|
T Consensus 13 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGL-PYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECC-CSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3457899999999 8999999999999999999999982 57999999999999999999998 899999999
Q ss_pred EEeecCCC
Q 030662 75 EYALKDDS 82 (173)
Q Consensus 75 ~~a~~~~~ 82 (173)
++++....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976543
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=1.6e-20 Score=129.39 Aligned_cols=79 Identities=20% Similarity=0.438 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHL-PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESC-CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 346789999999 8999999999999999999999882 4799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
|++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=124.87 Aligned_cols=79 Identities=19% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGL-PFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999 8999999999999999999999883 4899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
+++++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 52
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=123.19 Aligned_cols=74 Identities=28% Similarity=0.526 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
.++.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 13 ~~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESC-CTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 456789999999 8999999999999999999999982 5899999999999999999999999999999999
Q ss_pred Eee
Q 030662 76 YAL 78 (173)
Q Consensus 76 ~a~ 78 (173)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=126.13 Aligned_cols=80 Identities=30% Similarity=0.475 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcC------CCeec
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTD------RSKLV 68 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~------g~~i~ 68 (173)
+..+.++|||+|| |.++++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|| +..|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNL-SFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3457889999999 8999999999999999999999983 7899999999999999999999 99999
Q ss_pred CceEEEEEeecCCCC
Q 030662 69 DRVISVEYALKDDSE 83 (173)
Q Consensus 69 g~~l~v~~a~~~~~~ 83 (173)
|+.|.|.++.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 54
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.4e-20 Score=123.42 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
..+..|||+|| +..+++++|+++|.+||+|..+.| ++|||||+|.+.++|++|++.||+.+|.|+.|.|++|.
T Consensus 5 ~~~~wL~VgNL-~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNL-TAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECC-CTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCC-CccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35678999999 789999999999999999999988 69999999999999999999999999999999999984
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=124.28 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-----------CCeEEEEeCCHHHHHHHHHhcCCCeecCceE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 72 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 2 s~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 2 SSGSSGLFIKNL-NFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 367899999999 8999999999999999999998883 3699999999999999999999999999999
Q ss_pred EEEEeecCCCC
Q 030662 73 SVEYALKDDSE 83 (173)
Q Consensus 73 ~v~~a~~~~~~ 83 (173)
.|.++++....
T Consensus 81 ~V~~a~~~~~~ 91 (98)
T 2cpf_A 81 EVRISERATKP 91 (98)
T ss_dssp EEECSSCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=125.28 Aligned_cols=80 Identities=29% Similarity=0.569 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---------CCeEEEEeCCHHHHHHHHHhc-CCCeecCceE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALEST-DRSKLVDRVI 72 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---------~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l 72 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.| |+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNI-PFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCC-CCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 3457899999999 8999999999999999999999982 679999999999999999999 9999999999
Q ss_pred EEEEeecCCCC
Q 030662 73 SVEYALKDDSE 83 (173)
Q Consensus 73 ~v~~a~~~~~~ 83 (173)
.|+|++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887554
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.2e-20 Score=123.97 Aligned_cols=75 Identities=20% Similarity=0.465 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
|+++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 1 P~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSI-PYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 5789999999 8999999999999999999999982 789999999999999999999999999999999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
+++.
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8764
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=124.95 Aligned_cols=79 Identities=27% Similarity=0.324 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+.++|||+|| |.++++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 11 ~~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANL-DYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 4567899999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
+++....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9976543
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=126.64 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhcc-CCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCe-ecCceEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEP-YGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSK-LVDRVIS 73 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~-~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~-i~g~~l~ 73 (173)
+..+.++|||+|| |.++++++|+++|++ ||.|..|.| .+|||||+|.+.++|++||+.||+.. |.|+.|.
T Consensus 5 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDL-TPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECC-CTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4567899999999 899999999999999 999999988 36899999999999999999999999 9999999
Q ss_pred EEEeecCCCC
Q 030662 74 VEYALKDDSE 83 (173)
Q Consensus 74 v~~a~~~~~~ 83 (173)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999876544
No 60
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.2e-20 Score=129.73 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEee----CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.....+|||+|| |+.+++++|+++|++|| +|..+.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++++
T Consensus 25 p~~~~~l~VgnL-p~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 25 PAKRYRITMKNL-PEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCCEEEEEECS-SCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 455679999999 89999999999999999 89999883 8999999999999999999999999999999999997
Q ss_pred cCC
Q 030662 79 KDD 81 (173)
Q Consensus 79 ~~~ 81 (173)
..+
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=125.41 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeE-EEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCce-
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL-HVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV- 71 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~-~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~- 71 (173)
....+.++|||+|| |.++++++|+++|++||.|. .|.|. +|||||+|.+.++|++||+.||+..|.|..
T Consensus 4 ~~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 4 GSSGMAASLWMGDL-EPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCSSSSEEEECSC-CTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCccEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 45678899999999 89999999999999999999 98882 489999999999999999999999999999
Q ss_pred ---EEEEEeecCC
Q 030662 72 ---ISVEYALKDD 81 (173)
Q Consensus 72 ---l~v~~a~~~~ 81 (173)
|.|.||++..
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999998654
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=124.10 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
..+.++|||+|| |.++++++|+++|++|| |..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESC-CSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 456789999999 89999999999999999 9999883 679999999999999999 89999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
++++++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999886544
No 63
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=129.75 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCC--CeecCceEEEEEee
Q 030662 4 QRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDR--SKLVDRVISVEYAL 78 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g--~~i~g~~l~v~~a~ 78 (173)
..++++|||+|| |++ +++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.|++ ..|.|+.|.|++|+
T Consensus 22 ~~p~~~l~V~NL-p~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNL-PHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESC-CCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCC-CCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567899999999 897 9999999999999999999984 79999999999999999998864 56999999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
....
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6654
No 64
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=120.65 Aligned_cols=75 Identities=24% Similarity=0.454 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhc-CCCeecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l~v~~a~ 78 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.| ++..|.|+.|.|+||+
T Consensus 8 ~~~~~~~l~V~~l-~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGL-GDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECC-TTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCC-CCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3456789999999 8999999999999999999999984 699999999999999999999 9999999999999985
No 65
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=4e-20 Score=119.98 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
+.+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.+++
T Consensus 1 t~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 468999999 8999999999999999999999883 6899999999999999999999999999999999998
Q ss_pred cCC
Q 030662 79 KDD 81 (173)
Q Consensus 79 ~~~ 81 (173)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.9e-20 Score=125.58 Aligned_cols=80 Identities=25% Similarity=0.418 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCee---cCce
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKL---VDRV 71 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i---~g~~ 71 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..+ .|+.
T Consensus 9 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQI-PRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESC-CTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3457889999999 8999999999999999999999983 58999999999999999999999988 8999
Q ss_pred EEEEEeecCCCC
Q 030662 72 ISVEYALKDDSE 83 (173)
Q Consensus 72 l~v~~a~~~~~~ 83 (173)
|.|.+++++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=126.23 Aligned_cols=77 Identities=26% Similarity=0.489 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|++
T Consensus 21 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGV-HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999 8999999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
|+++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 987653
No 68
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=125.96 Aligned_cols=79 Identities=18% Similarity=0.431 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.|+++..
T Consensus 22 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGI-ASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECC-SSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 456789999999 8999999999999999999999985 7999999999999999999999999999999999998765
Q ss_pred CC
Q 030662 82 SE 83 (173)
Q Consensus 82 ~~ 83 (173)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=4.4e-20 Score=126.19 Aligned_cols=77 Identities=22% Similarity=0.477 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 24 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999 8999999999999999999999983 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 998654
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=126.61 Aligned_cols=80 Identities=20% Similarity=0.239 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeE--------EEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--------HVRI--------RRNFAFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~--------~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~ 66 (173)
+..+.++|||+|| |..+++++|+++|++||.|. .|.| .+|||||+|.+.++|++||+.||+..
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGL-NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECC-CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3457899999999 89999999999999999998 5777 26899999999999999999999999
Q ss_pred ecCceEEEEEeecCCCC
Q 030662 67 LVDRVISVEYALKDDSE 83 (173)
Q Consensus 67 i~g~~l~v~~a~~~~~~ 83 (173)
|.|+.|.|.+++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 71
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=4.7e-20 Score=123.16 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEee-----CCeEEEEeCCHHHHHHHHHhcCCCeecCceE
Q 030662 2 ANQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 72 (173)
.+.+++++|||+|| |.++++++|+ ++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 3 ~~~~~~~~l~V~nL-p~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 3 PETRPNHTIYINNL-NEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp ---CCCSEEEEESC-CTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999 8999999999 999999999999884 7999999999999999999999999999999
Q ss_pred EEEEeecCC
Q 030662 73 SVEYALKDD 81 (173)
Q Consensus 73 ~v~~a~~~~ 81 (173)
.|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 72
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=125.63 Aligned_cols=75 Identities=24% Similarity=0.475 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcC-CCeecCceEEEEE
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI--------RRNFAFVQFETQEEATKALESTD-RSKLVDRVISVEY 76 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~-g~~i~g~~l~v~~ 76 (173)
+.+|||+|| |.++|+++|+++|++|| +|..|.| .+|||||+|.+.++|++||+.|+ +..|.|+.|.|++
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 468999999 89999999999999999 8998887 37899999999999999999874 5679999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
|.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=5.7e-20 Score=124.94 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 25 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467899999999 8999999999999999999999884 6899999999999999999999999999999999
Q ss_pred Eee
Q 030662 76 YAL 78 (173)
Q Consensus 76 ~a~ 78 (173)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 74
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-20 Score=122.84 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
...+.++|||+|| |.++++++|+++|++||.|..+.. .+|||||+|.+.++|++||+.||+..|.|+.|.|+|++
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 11 WSGESKTLVLSNL-SYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSCCCSEEEEESC-CTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 3457899999999 899999999999999998843322 47999999999999999999999999999999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-20 Score=123.65 Aligned_cols=76 Identities=36% Similarity=0.504 Sum_probs=70.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESC-CSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567889999999 8999999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeec
Q 030662 75 EYALK 79 (173)
Q Consensus 75 ~~a~~ 79 (173)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=126.03 Aligned_cols=77 Identities=34% Similarity=0.564 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
...+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|++
T Consensus 25 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNI-PFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESC-CTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECC-CCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3557899999999 8999999999999999999999984 79999999999999999999999999999999999
Q ss_pred eecC
Q 030662 77 ALKD 80 (173)
Q Consensus 77 a~~~ 80 (173)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9865
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=2.7e-20 Score=131.29 Aligned_cols=79 Identities=34% Similarity=0.560 Sum_probs=73.0
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+.++.++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 42 ~~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGL-SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETC-TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4567899999999 8999999999999999999999883 689999999999999999999999999999999
Q ss_pred EEeecCCC
Q 030662 75 EYALKDDS 82 (173)
Q Consensus 75 ~~a~~~~~ 82 (173)
+|++++++
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99987653
No 78
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=122.71 Aligned_cols=77 Identities=29% Similarity=0.479 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++|| |..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|+
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNL-PFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESC-CTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCC-CCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 456889999999 89999999999999997 9999883 579999999999999999 899999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
++++....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 79
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=123.78 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
....++|||+|| |.++++++|+++|++||.|. +.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|+++++
T Consensus 16 ~~~~~~l~V~nL-~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNL-PRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECC-CTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCC-CCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345789999999 89999999999999999986 444 489999999999999999999999999999999999987
Q ss_pred CC
Q 030662 80 DD 81 (173)
Q Consensus 80 ~~ 81 (173)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 80
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=128.95 Aligned_cols=78 Identities=14% Similarity=0.307 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEe-----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
...++++|||+|| ++.+++++|+ ++|++||.|..|.+ .+|||||+|.+.++|+.||+.|||..|.|+.|.
T Consensus 25 ~~~p~~~LfV~nL-~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNI-NPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSCCSEEEEESC-CTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3567899999999 8899998865 79999999999988 369999999999999999999999999999999
Q ss_pred EEEeecCC
Q 030662 74 VEYALKDD 81 (173)
Q Consensus 74 v~~a~~~~ 81 (173)
|.||+.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998654
No 81
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.4e-20 Score=124.88 Aligned_cols=75 Identities=17% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
....++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.|+++
T Consensus 24 ~~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNI-PHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESC-CTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCC-CcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 345789999999 899999999999999999999998 589999999999999999999999999999999999875
No 82
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=125.93 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCe----EEEEe----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i----~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|.+||.| ..+.+ .+|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNL-SPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECC-CTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456799999999 8999999999999999998 45555 37999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 030662 76 YALKDDSER 84 (173)
Q Consensus 76 ~a~~~~~~~ 84 (173)
|++++....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpx_A 101 FGKNKKQRS 109 (115)
T ss_dssp ECCCCSCCC
T ss_pred EccCCCCCC
Confidence 999876543
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=126.04 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHH---HhhccCCCeEEEEee-----------CCeEEEEeCCHHHHHHHHHhcCCCeecC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIK---RHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVD 69 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~---~~F~~~G~i~~~~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~i~g 69 (173)
..+.++|||+|| |+.+++++|+ ++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|
T Consensus 12 ~~~~~~l~V~nL-p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGL-SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEE-CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECC-CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 345789999999 8999999999 999999999999883 2699999999999999999999999999
Q ss_pred ceEEEEEeecCC
Q 030662 70 RVISVEYALKDD 81 (173)
Q Consensus 70 ~~l~v~~a~~~~ 81 (173)
+.|.|+||+++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 84
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=6.9e-20 Score=134.07 Aligned_cols=78 Identities=22% Similarity=0.476 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.|
T Consensus 70 ~~~~~l~V~nL-p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 70 VEGWILFVTSI-HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp C-CEEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999 8999999999999999999999883 58999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
+.++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9987653
No 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=122.07 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
...+.++|||+|| |.++++++|+++|+.|+.|..+.. .+|||||+|.+.++|++||+.||+..|.|+.|.|+|+
T Consensus 11 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 11 RSQPSKTLFVKGL-SEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSCCCSSEEEECC-CTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCC-CCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3467899999999 899999999999999976554433 2589999999999999999999999999999999999
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87654
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=9.4e-20 Score=122.34 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=69.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEee--------CCeEEEEeCCHHHHHHHHHhcCCCe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRIR--------RNFAFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~ 66 (173)
...+.++|||+|| |.++++++|+++|++||.|.. |.|. +|||||+|.+.++|++||+.|||..
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECC-CSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567899999999 899999999999999999998 7772 5799999999999999999999999
Q ss_pred ecCceEEEEEee
Q 030662 67 LVDRVISVEYAL 78 (173)
Q Consensus 67 i~g~~l~v~~a~ 78 (173)
|.|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999984
No 87
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=118.92 Aligned_cols=77 Identities=26% Similarity=0.426 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..+.++|||+|| ++++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|.|++++.
T Consensus 12 ~~~~~~l~V~n~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 346789999998 5899999999999999999998 48999999999999999999999999999999999998765
Q ss_pred CC
Q 030662 82 SE 83 (173)
Q Consensus 82 ~~ 83 (173)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=9.5e-20 Score=125.98 Aligned_cols=74 Identities=22% Similarity=0.468 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 37 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHL-PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECS-CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 456789999999 8999999999999999999999882 6899999999999999999999999999999999
Q ss_pred Eee
Q 030662 76 YAL 78 (173)
Q Consensus 76 ~a~ 78 (173)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 89
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=123.18 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCC--eEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCC----eec
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN--VLHVRI--------RRNFAFVQFETQEEATKALESTDRS----KLV 68 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~--i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~----~i~ 68 (173)
....-.+|||+|| |..+|+++|+++|++||. |..|.| ++|||||+|.+.++|++||+.||+. .|+
T Consensus 5 ~~~~m~tlfV~nL-~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 5 HHHHMDTIILRNI-APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp SSCCCCEEEEESC-CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred cCCccCEEEEeCC-CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 3456789999999 899999999999999995 567776 3789999999999999999999997 489
Q ss_pred CceEEEEEeec
Q 030662 69 DRVISVEYALK 79 (173)
Q Consensus 69 g~~l~v~~a~~ 79 (173)
|+.|.|+||+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999974
No 90
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=124.94 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGL-DWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4567899999999 8999999999999999999999883 47999999999999999998 999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=122.20 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+.++|||+|| |..+++++|+++|++||+|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 12 ~~~~~~~l~v~nl-p~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNL-EARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3456789999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred Eeec
Q 030662 76 YALK 79 (173)
Q Consensus 76 ~a~~ 79 (173)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9863
No 92
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=3.7e-20 Score=124.84 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCC------CCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecC
Q 030662 4 QRPTKTLFVINFDPI------RTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVD 69 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~------~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g 69 (173)
....++|||+|| |. .+++++|.++|++||.|..|.| ++|||||+|.+.++|++||+.|||..|.|
T Consensus 3 ~~~~~~vfV~nL-p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 3 LGSDQYIVVNGA-PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp SCGGGEEEEESC-CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCcCcEEEEeCC-CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 445789999999 99 9999999999999999999988 37999999999999999999999999999
Q ss_pred -ceEEEEEeecC
Q 030662 70 -RVISVEYALKD 80 (173)
Q Consensus 70 -~~l~v~~a~~~ 80 (173)
+.|.|.+|.+.
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999999753
No 93
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=124.80 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..++|||+|| |..+++++|+++|++||.|..|.| .++||||+|.+.++|++||+.|||..|.|+.|.|+||....
T Consensus 9 ~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNL-PAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4579999999 899999999999999999999998 57999999999999999999999999999999999998654
No 94
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=6.1e-20 Score=123.61 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCCC
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDDS 82 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~~ 82 (173)
++|||+|| |.++++++|+++|++||+|..|.| .+|||||+|.+.++|++|++.||+..|.|+.|.|+++++...
T Consensus 1 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNL-GTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECC-CSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999 899999999999999999999998 478999999999999999999999999999999999987653
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=124.18 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
...+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 22 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 22 GSAGPMRLYVGSL-HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp SCSSCEEEEEECC-CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3456789999999 8999999999999999999999883 579999999999999999999999999999999
Q ss_pred EEeecCC
Q 030662 75 EYALKDD 81 (173)
Q Consensus 75 ~~a~~~~ 81 (173)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998653
No 96
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=124.21 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCCCCCEEEE--cCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCee-----cCceEE
Q 030662 3 NQRPTKTLFV--INFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKL-----VDRVIS 73 (173)
Q Consensus 3 ~~~~~~~l~V--~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i-----~g~~l~ 73 (173)
...|+.+||| +|| ++++++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||.+| .|..|.
T Consensus 21 ~~~pt~~L~V~Ng~L-~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTG-GGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4567899999 779 8999999999999999999999884 78999999999999999999999988 688999
Q ss_pred EEEeecCCC
Q 030662 74 VEYALKDDS 82 (173)
Q Consensus 74 v~~a~~~~~ 82 (173)
|.+++..+.
T Consensus 100 v~~a~~~p~ 108 (114)
T 2cq2_A 100 LNFVEKVQW 108 (114)
T ss_dssp EEEESCCCC
T ss_pred EEecccCcc
Confidence 999986544
No 97
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.2e-20 Score=122.26 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
.+..++|||+|| |.++++++|+++|.+||.|..+.+ .+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 12 ~~~~~~l~v~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESC-CTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 445689999999 899999999999999999865443 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 98
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2e-20 Score=123.72 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=63.1
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
.+|||+|| |+++++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 2 ~~l~V~nL-~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESC-CTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCC-CCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999 89999999999999999 8988887 3679999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030662 78 LKDDSE 83 (173)
Q Consensus 78 ~~~~~~ 83 (173)
.+....
T Consensus 81 ~~~~~~ 86 (90)
T 3p5t_L 81 NKLEHH 86 (90)
T ss_dssp ------
T ss_pred CCCccc
Confidence 876543
No 99
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.7e-19 Score=123.17 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-----eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-----RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
...++++|||+|| |..+++++|.++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|.|+
T Consensus 4 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 4 PPEVNRILYIRNL-PYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CTTCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 3567899999999 899999999999999999999998 3689999999999999999999999999999999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 100
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=121.55 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=68.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.+ +..|.|+.|.|
T Consensus 21 ~~~~~~~lfV~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 4557889999999 8999999999999999999999982 689999999999999999986 59999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
.++.+....
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 101
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=120.77 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
...+.++|||+|| |..+++++|+++|++||.|..+.. .+|||||+|.+.++|++||+.||+..|.|+.|.|.++.+
T Consensus 12 ~~~~~~~l~V~nL-~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESC-CSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCC-CCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3456789999999 899999999999999999877732 478999999999999999999999999999999999987
Q ss_pred CCC
Q 030662 80 DDS 82 (173)
Q Consensus 80 ~~~ 82 (173)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 102
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=121.45 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCC-eEEEEee---------CCeEEEEeCCHHHHHHHHHhcC--CCeecCc
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN-VLHVRIR---------RNFAFVQFETQEEATKALESTD--RSKLVDR 70 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~-i~~~~~~---------~g~afV~f~~~~~a~~A~~~l~--g~~i~g~ 70 (173)
...+.++|||+|| |.++++++|+++|.+||. |..|.|. +|||||+|.+.++|++||+.|+ +..|.|+
T Consensus 4 ~s~~~~~l~V~nL-p~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 4 GSSGNCRLFIGGI-PKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CCCCSEEEEEECC-CTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred cccCCCEEEEeCC-CCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 3467889999999 899999999999999998 9999884 6899999999999999999996 5899999
Q ss_pred eEEEEEeecCCC
Q 030662 71 VISVEYALKDDS 82 (173)
Q Consensus 71 ~l~v~~a~~~~~ 82 (173)
.|.|+||++...
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 999999987654
No 103
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=123.46 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
..+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|++
T Consensus 32 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESC-CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456789999999 899999999999999999999988 368999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
|......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=2.9e-19 Score=117.34 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
..++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|+ .||+..|.|+.|.|.++
T Consensus 5 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 5 DARSIYVGNV-DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHTEEEEESC-CTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred cCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3579999999 8999999999999999999999882 679999999999999999 89999999999999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
++..
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 7653
No 105
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=122.24 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
..+.++|||+|| |.++|+++|.++|++||+|..|.|. +|||||+|.+.++|++||+ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~L-p~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECC-CTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECC-CCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 345689999999 8999999999999999999999983 6999999999999999999 899999999999999
Q ss_pred eec
Q 030662 77 ALK 79 (173)
Q Consensus 77 a~~ 79 (173)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 106
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=122.09 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.++|||+|| |.++++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|.+++
T Consensus 27 ~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGL-SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECC-TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 589999999 8999999999999999999999882 58999999999999999997 9999999999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=116.28 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=69.7
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
......+|||+|| |+++++++|+++|++| .|..|.|. +|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nL-p~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGA-PFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECC-CSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECC-CCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 3456789999999 8999999999999999 89998882 6799999999999999999 99999999999999
Q ss_pred EeecCC
Q 030662 76 YALKDD 81 (173)
Q Consensus 76 ~a~~~~ 81 (173)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 108
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=7.2e-20 Score=121.77 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
.++.++|||+|| |+++++++|+++|++||.|..+.+ .+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 12 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 12 KPGPTVIKVQNM-PFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ---CEEEEEECC-CTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 345789999999 899999999999999999875554 36899999999999999999999999999999999
Q ss_pred Eeec
Q 030662 76 YALK 79 (173)
Q Consensus 76 ~a~~ 79 (173)
++..
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 8753
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=4.2e-19 Score=124.99 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe---eCCe-EEEEeCCHHHHHHHHHhcCCCeecC--ceEEEEEeec
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 79 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~---~~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~l~v~~a~~ 79 (173)
+...|||+|| ++.+++++|+++|++||+|..|.| .+|| |||+|.+.++|++|++.|||..|.| ..|+|+|++.
T Consensus 27 ~VL~I~V~NL-~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 27 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp SEEEEEEESC-CSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred ceEEEEECCC-CCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3456779999 899999999999999999999988 3677 9999999999999999999999988 8999999987
Q ss_pred CC
Q 030662 80 DD 81 (173)
Q Consensus 80 ~~ 81 (173)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 110
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=118.54 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=69.8
Q ss_pred CCCCCCCE-EEEcCCCCCCCCHHH----HHHhhccC-CCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 2 ANQRPTKT-LFVINFDPIRTRERD----IKRHFEPY-GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 2 ~~~~~~~~-l~V~nL~p~~~~e~~----L~~~F~~~-G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+|+.| |||+|| |+.+++++ |+++|++| |+|..| ..|+|||+|.+.++|+.|++.|||..|.|+.|+|+
T Consensus 3 ~~~~p~~T~lYV~NL-~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 3 SGSSGCHTLLYVYNL-PANKDGKSVSNRLRRLSDNCGGKVLSI--TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSCCCSSEEEEEESC-CTTSCHHHHHHHHHHHHHTTTCCEEEC--CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCcceEEEEeCC-CCcCCHHHHHHHHHHHHHHcCCeeEEE--ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 45677888 899999 89999987 55899999 499988 45999999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
+|+....
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9987653
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.5e-19 Score=128.35 Aligned_cols=79 Identities=33% Similarity=0.461 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 44 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECC-CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345789999999 8999999999999999999999882 6799999999999999999999999999999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
|+++....
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 112
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=7.1e-19 Score=127.37 Aligned_cols=78 Identities=33% Similarity=0.476 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 68 ~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNL-TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESC-CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999 899999999999999999999998 368999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
+++....
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=120.82 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCC------CHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCc-e
Q 030662 5 RPTKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-V 71 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~------~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~ 71 (173)
...++|||+|| |+.+ ++++|.++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+ .
T Consensus 13 ~~~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESC-CCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCC-CcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 34689999999 8888 789999999999999999984 79999999999999999999999999998 9
Q ss_pred EEEEEeecC
Q 030662 72 ISVEYALKD 80 (173)
Q Consensus 72 l~v~~a~~~ 80 (173)
|.|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 114
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=6.7e-19 Score=115.28 Aligned_cols=73 Identities=29% Similarity=0.530 Sum_probs=66.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 7 ~~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGL-SWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 4567899999999 8999999999999999999999883 6799999999999999997 5888999999999
Q ss_pred EEe
Q 030662 75 EYA 77 (173)
Q Consensus 75 ~~a 77 (173)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 115
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=117.40 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |+.+++++|+++|.+||.|.. |.| .+|||||+|.+.++|++||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGL-PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999 899999999999999999987 766 379999999999999999997 9999999999999
Q ss_pred EeecCC
Q 030662 76 YALKDD 81 (173)
Q Consensus 76 ~a~~~~ 81 (173)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 116
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.1e-19 Score=129.08 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+|||+|| |+++++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 54 ~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4579999999 89999999999999999 9999988 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
+|.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99753
No 117
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=4.3e-19 Score=129.43 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee----CCeEEEEeCCHHHHHHHHHhcCCCeecC--ceEEEEEeec
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKLVD--RVISVEYALK 79 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~l~v~~a~~ 79 (173)
...+|||+|| ++.+++++|+++|++||+|..|.|. ++||||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 45 ~vl~l~VgNL-~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 45 PVLRIIVENL-FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEECSC-CSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred ceEEEEEeCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3456889999 8999999999999999999999982 5699999999999999999999999965 9999999987
Q ss_pred CC
Q 030662 80 DD 81 (173)
Q Consensus 80 ~~ 81 (173)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 118
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=115.68 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeC--C-eEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRR--N-FAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~--g-~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
.....++|||+|| |+++++++|+++|++||.|..|.+.+ + ||||+|.+.++|++||+ ||+..|.|+.|.|.++..
T Consensus 4 ~~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 4 GSSGLRSVFVSGF-PRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CCTTCCEEEEECC-CTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred ccCCCCEEEEECC-CCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4456789999999 89999999999999999999985421 2 99999999999999999 999999999999998876
Q ss_pred CCC
Q 030662 80 DDS 82 (173)
Q Consensus 80 ~~~ 82 (173)
...
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=117.60 Aligned_cols=76 Identities=29% Similarity=0.536 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |+.+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+ +++.|.|+.|.|.
T Consensus 12 ~~~~~~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 12 VQKTSDLIVLGL-PWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCEEEESC-CSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred cCCCCEEEEEcC-CCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 456789999999 8999999999999999999999882 5799999999999999998 4779999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987654
No 120
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-19 Score=120.82 Aligned_cols=77 Identities=25% Similarity=0.503 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nl-p~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNI-PYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESC-CTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCC-CCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35689999999 8999999999999999999999883 68999999999999999999999999999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
+.+...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987653
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=118.29 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=67.4
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+.++|||+|| |+++++++|+++|++||.| .|.| ++|||||+|.+.++|++||+ +|++.|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGL-PYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESC-CTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999 8999999999999999954 7777 36899999999999999995 79999999999999
Q ss_pred EeecCC
Q 030662 76 YALKDD 81 (173)
Q Consensus 76 ~a~~~~ 81 (173)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=4.6e-19 Score=127.54 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
..+.++|||+|| |+.+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.|.|++++
T Consensus 70 ~~~~~~l~V~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNL-GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESC-CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 346789999999 8999999999999999999999994 899999999999999999999999999999999999875
Q ss_pred C
Q 030662 81 D 81 (173)
Q Consensus 81 ~ 81 (173)
+
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=122.19 Aligned_cols=73 Identities=26% Similarity=0.458 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|.+++
T Consensus 25 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 25 ARTVFCMQL-AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HTEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 469999999 8999999999999999999999983 689999999999999999 899999999999999998
Q ss_pred cCC
Q 030662 79 KDD 81 (173)
Q Consensus 79 ~~~ 81 (173)
+..
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 124
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=5.8e-19 Score=116.11 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
...++|||+|| |.++++++|+++|++| .|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|+++....
T Consensus 3 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNL-PQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESC-CSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 46789999999 8999999999999999 9998887 58999999999999999999999999999999999997543
No 125
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=9.6e-19 Score=121.90 Aligned_cols=74 Identities=19% Similarity=0.412 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|| .||+..|.|+.|.|++++
T Consensus 36 ~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNV-DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEE-CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 579999999 8999999999999999999999882 689999999999999999 799999999999999998
Q ss_pred cCCC
Q 030662 79 KDDS 82 (173)
Q Consensus 79 ~~~~ 82 (173)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=119.49 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCee--------c
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKL--------V 68 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i--------~ 68 (173)
..+.++|||+|| |..+++++|+++|.+||.|..|.|. +|||||+|.+.++|++||+.|||..| .
T Consensus 22 ~~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNL-PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESC-CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356789999999 8999999999999999999999883 57999999999999999999999999 5
Q ss_pred CceEEEEEeecC
Q 030662 69 DRVISVEYALKD 80 (173)
Q Consensus 69 g~~l~v~~a~~~ 80 (173)
++.|.|.||.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999854
No 127
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=122.02 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCE--EEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCe-EEEEeCCHHHHHHHHHhcCCCeecC--ceEEEEEe
Q 030662 5 RPTKT--LFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNF-AFVQFETQEEATKALESTDRSKLVD--RVISVEYA 77 (173)
Q Consensus 5 ~~~~~--l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~-afV~f~~~~~a~~A~~~l~g~~i~g--~~l~v~~a 77 (173)
+|+++ |||+|| ++.+++++|+++|++||.|..|.|. .|| |||+|.+.++|++|++.|||..|.| ..|.|++|
T Consensus 21 ~ps~vl~l~V~NL-~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNP-LYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESC-CSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCc-CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34555 578999 8999999999999999999999883 486 9999999999999999999999987 58999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-19 Score=118.40 Aligned_cols=73 Identities=18% Similarity=0.400 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 2 ~~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 2 SSGSSGLYIRGL-QPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCCEEEEESC-CTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 467899999999 8999999999999999999999882 6899999999999999999999999999988776
Q ss_pred Ee
Q 030662 76 YA 77 (173)
Q Consensus 76 ~a 77 (173)
++
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 129
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=120.97 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCe-EEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNV-LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i-~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+..+|||+|| |+.+++++|+++|++||.| ..|.| .+|||||+|.+.++|++||+. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNI-PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESC-CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCc-CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 456789999999 8999999999999999999 67777 479999999999999999987 9999999999999
Q ss_pred EeecCC
Q 030662 76 YALKDD 81 (173)
Q Consensus 76 ~a~~~~ 81 (173)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998654
No 130
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=123.78 Aligned_cols=73 Identities=30% Similarity=0.596 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+.++|||+|| |..+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|+
T Consensus 60 ~~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGL-AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECC-CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeC-CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 457899999999 899999999999999999999998 37899999999999999999999999999999999
Q ss_pred Ee
Q 030662 76 YA 77 (173)
Q Consensus 76 ~a 77 (173)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 131
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=125.80 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE--EEe--------eCCeEEEEeCCHHHHHHHHHhcCCC----eecC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--VRI--------RRNFAFVQFETQEEATKALESTDRS----KLVD 69 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--~~~--------~~g~afV~f~~~~~a~~A~~~l~g~----~i~g 69 (173)
..+.++|||+|| |+++++++|+++|++||.|.. |.| .+|||||+|.+. +|++||+.||+. .|.|
T Consensus 20 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 356789999999 899999999999999999966 776 379999999999 999999999999 9999
Q ss_pred ceEEEEEeecCCC
Q 030662 70 RVISVEYALKDDS 82 (173)
Q Consensus 70 ~~l~v~~a~~~~~ 82 (173)
+.|.|+++++...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987543
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=119.36 Aligned_cols=75 Identities=29% Similarity=0.468 Sum_probs=66.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
..+.++|||+|| |.++++++|+++|++|| |..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.|
T Consensus 16 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNL-PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCC-SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 456789999999 89999999999999999 9999982 689999999999999999 89999999999999
Q ss_pred EEeecCC
Q 030662 75 EYALKDD 81 (173)
Q Consensus 75 ~~a~~~~ 81 (173)
+++++..
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998653
No 133
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-19 Score=122.05 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
..+..+|||+|| |.++++++|+++|++||.|..+.+ .+|||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999 899999999999999997755222 48999999999999999999 999999999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=113.84 Aligned_cols=67 Identities=19% Similarity=0.359 Sum_probs=62.2
Q ss_pred CCEEEEcCCCCCCC------CHHHHHHhhccCCCeEEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCc-eEE
Q 030662 7 TKTLFVINFDPIRT------RERDIKRHFEPYGNVLHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR-VIS 73 (173)
Q Consensus 7 ~~~l~V~nL~p~~~------~e~~L~~~F~~~G~i~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~-~l~ 73 (173)
.++|||+|| |..+ ++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+ .|.
T Consensus 1 ~~~l~V~nL-p~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNV-PQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESC-CCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCC-CCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 368999999 8888 779999999999999999984 79999999999999999999999999999 887
Q ss_pred E
Q 030662 74 V 74 (173)
Q Consensus 74 v 74 (173)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=6.5e-19 Score=125.81 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEe-----eCCeEEEEeCCHHHHHHHHHhcCCCeecCc
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI-----RRNFAFVQFETQEEATKALESTDRSKLVDR 70 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 70 (173)
..++++|||+|| |+.+++++|.++|++||.|.. +.+ .+|||||+|.+.++|++||+.|||..|.|+
T Consensus 42 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNL-AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEE-CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 457899999999 899999999999999998765 332 378999999999999999999999999999
Q ss_pred eEEEEEeecCCCC
Q 030662 71 VISVEYALKDDSE 83 (173)
Q Consensus 71 ~l~v~~a~~~~~~ 83 (173)
.|.|.+|+....+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999876543
No 136
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=7.9e-19 Score=121.77 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
....++|||+|| |+++++++|+++|++||. |..|.| .+|||||+|.+.++|++||+ ||++.|.|+.|.
T Consensus 14 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGL-PWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESC-CTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999 899999999999999998 788877 36899999999999999999 999999999999
Q ss_pred EEEeecC
Q 030662 74 VEYALKD 80 (173)
Q Consensus 74 v~~a~~~ 80 (173)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999754
No 137
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=128.98 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
..+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|+|
T Consensus 85 ~~~~~~l~V~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNL-DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECC-CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999 8999999999999999999999983 68999999999999999999999999999999999
Q ss_pred eecCC
Q 030662 77 ALKDD 81 (173)
Q Consensus 77 a~~~~ 81 (173)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 138
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=7.2e-19 Score=135.24 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYG--NVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G--~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..++|||+|| ++++++++|+++|++|| .|+.|.| .+|||||+|.+.++|++||+.||++.|.|+.|.|.
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4678999999 89999999999999999 9999988 36899999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
+|++.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 99753
No 139
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=5.9e-19 Score=112.43 Aligned_cols=67 Identities=27% Similarity=0.494 Sum_probs=62.8
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++ ||+..|.|+.|.|++|
T Consensus 1 ~l~v~nl-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGL-SVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECC-CSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999 8999999999999999999999882 5899999999999999998 9999999999999875
No 140
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-19 Score=124.39 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-VRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+..+|||+|| |+++++++|+++|.+||.|.. +.| .+|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 22 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGL-PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECC-CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999 899999999999999999865 233 37899999999999999999 99999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99754
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-20 Score=127.89 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEe--------eCCeEEEEeCCHHHHHHHHHhcCCCe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH--------VRI--------RRNFAFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~--------~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~ 66 (173)
+..+.++|||+|| |.++++++|+++|++||.|.. |.| .+|||||+|.+.++|++||+.||+..
T Consensus 3 ~~~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 3 DNSDNNTIFVQGL-GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 4567899999999 899999999999999999987 666 36899999999999999999999999
Q ss_pred ecCceEEEEEeecCCC
Q 030662 67 LVDRVISVEYALKDDS 82 (173)
Q Consensus 67 i~g~~l~v~~a~~~~~ 82 (173)
|.|+.|.|++++++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999999987654
No 142
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=2e-18 Score=120.30 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
..+.++|||+|| ++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.|+++..
T Consensus 36 ~~~~~~lfVgnl---~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE---DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS---SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC---CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456889999998 48999999999999999999884 8999999999999999999999999999999999998765
Q ss_pred C
Q 030662 82 S 82 (173)
Q Consensus 82 ~ 82 (173)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=114.96 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEE-Eee----CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RIR----RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~~~----~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
...++|||+|| |.++++++|+++|++||.|..| .|. .+.|||+|.+.++|++||+.|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nl-p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNI-PPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEE-CSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34789999999 8999999999999999999999 463 34599999999999999999999999999999999987
Q ss_pred CC
Q 030662 80 DD 81 (173)
Q Consensus 80 ~~ 81 (173)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 144
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=3.4e-18 Score=129.32 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCC-CCCCHHHHHHhhccCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 5 RPTKTLFVINFDP-IRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 5 ~~~~~l~V~nL~p-~~~~e~~L~~~F~~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
.++++|||+|| + +.+++++|.++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.+++.+
T Consensus 2 ~~~~~l~V~nL-~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGL-DQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECC-CTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCC-CcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 46889999999 7 89999999999999999999998 3699999999999999999999999999999999999754
Q ss_pred C
Q 030662 81 D 81 (173)
Q Consensus 81 ~ 81 (173)
.
T Consensus 81 ~ 81 (205)
T 3tyt_A 81 A 81 (205)
T ss_dssp C
T ss_pred c
Confidence 3
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=3.3e-19 Score=117.49 Aligned_cols=73 Identities=23% Similarity=0.498 Sum_probs=64.9
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.+ |++|++.|||..|.|+.|.|++|.+
T Consensus 2 ~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNL-VYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEE-CTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCC-CCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999 8999999999999999999999883 689999999999 9999999999999999999999987
Q ss_pred CCC
Q 030662 80 DDS 82 (173)
Q Consensus 80 ~~~ 82 (173)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.4e-18 Score=123.47 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
....++|||+|| |+++|+++|+++|++||. |..|.| ++|||||+|.+.++|++||+ ||+..|.|+.|.
T Consensus 41 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGL-PWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESC-CTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999 899999999999999998 777777 36899999999999999999 999999999999
Q ss_pred EEEeecC
Q 030662 74 VEYALKD 80 (173)
Q Consensus 74 v~~a~~~ 80 (173)
|.++...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-19 Score=111.90 Aligned_cols=68 Identities=24% Similarity=0.418 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|+ ..|.|+.|.|++|
T Consensus 1 ~~l~v~nl-p~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGL-SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESC-CSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999 8999999999999999999998882 6899999999999999999999 9999999999987
No 148
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=112.83 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=64.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|+.. ...+.|..|.|.+++++
T Consensus 2 ~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 2 SSGSSGVFVGRC-TGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CSCCCEEEEESC-CSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 357899999999 8999999999999999999999994 79999999999999765321 34558999999998876
Q ss_pred CC
Q 030662 81 DS 82 (173)
Q Consensus 81 ~~ 82 (173)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 149
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=111.51 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=60.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCe--ecCceEEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSK--LVDRVISVEYA 77 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~--i~g~~l~v~~a 77 (173)
...+..+|||+|| |+++++++|+++|++||.|..|.|. +|||||+|.+.++|++ |++.. +.|..|.|.+|
T Consensus 7 ~~~~~~~l~V~~L-p~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRC-TEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ----CCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3467899999999 8999999999999999999999994 7999999999999984 45544 46999999999
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87643
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=7.6e-19 Score=125.35 Aligned_cols=75 Identities=28% Similarity=0.397 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
...++|||+|| |+++++++|+++|++|| |+.|.| ++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 44 ~~~~~lfV~nL-p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGL-PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSC-CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 45679999999 99999999999999999 668887 3789999999999999999 78999999999999998
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 151
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=117.57 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=65.2
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
..+|||+|| |+++++++|+++|++| .|..|.| .+|||||+|.+.++|++|| .||+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nL-p~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGM-PFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECC-CSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 468999999 9999999999999999 8988888 3799999999999999999 5899999999999988864
Q ss_pred C
Q 030662 80 D 80 (173)
Q Consensus 80 ~ 80 (173)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=4.6e-18 Score=111.08 Aligned_cols=70 Identities=29% Similarity=0.520 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCc
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDR 70 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~ 70 (173)
..+.++|||+|| |.++++++|+++|++| | .|..+.+. +|||||+|.+.++|++|+ .||+..|.|+
T Consensus 3 ~~~~~~l~V~nL-p~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 3 LGSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp SGGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 457789999999 8999999999999999 8 89999884 899999999999999999 9999999999
Q ss_pred eEEEE
Q 030662 71 VISVE 75 (173)
Q Consensus 71 ~l~v~ 75 (173)
.|.|+
T Consensus 81 ~l~V~ 85 (87)
T 2hzc_A 81 SLKIR 85 (87)
T ss_dssp ECEEE
T ss_pred EEEEe
Confidence 99986
No 153
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=118.18 Aligned_cols=76 Identities=18% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCC---eEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGN---VLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~---i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 72 (173)
+....++|||+|| |+++++++|+++|..||. |..|.| .+|||||+|.+.++|++||+ ||+..|.|+.|
T Consensus 7 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGL-PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECC-CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCC-CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3557889999999 899999999999999988 888887 37899999999999999999 99999999999
Q ss_pred EEEEeecC
Q 030662 73 SVEYALKD 80 (173)
Q Consensus 73 ~v~~a~~~ 80 (173)
.|.++.+.
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.1e-17 Score=126.80 Aligned_cols=76 Identities=21% Similarity=0.475 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..|.++|||+|| |.++++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.||+..+.|+.|.|.
T Consensus 12 ~~p~~tlfVgnL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDL-HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 457889999999 899999999999999999999988 25799999999999999999999999999999999
Q ss_pred EeecC
Q 030662 76 YALKD 80 (173)
Q Consensus 76 ~a~~~ 80 (173)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98754
No 155
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=7.8e-18 Score=129.99 Aligned_cols=78 Identities=27% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCC---------CHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCee-----
Q 030662 4 QRPTKTLFVINFDPIRT---------RERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKL----- 67 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~---------~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i----- 67 (173)
..++++|||+|| +..+ ++++|.++|++||+|..|.| .+|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL-~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGI-DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECT-TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCC-ChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 456789999999 7777 79999999999999999988 589999999999999999999999999
Q ss_pred -------cCceEEEEEeecCCC
Q 030662 68 -------VDRVISVEYALKDDS 82 (173)
Q Consensus 68 -------~g~~l~v~~a~~~~~ 82 (173)
.|..|.|.||+..+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TTGGGGGGSCCCEEEECC----
T ss_pred ccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.7e-17 Score=125.72 Aligned_cols=74 Identities=27% Similarity=0.479 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
...+|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.|||..|.|+.|.|.+|++
T Consensus 102 ~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCc-ccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3578999999 899999999999999999999988 378999999999999999999999999999999999986
Q ss_pred C
Q 030662 80 D 80 (173)
Q Consensus 80 ~ 80 (173)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 4
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.6e-17 Score=118.48 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+.++|||+|| |.++++++|.++|++||.|..|.| .+|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYL-PQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECC-CTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 6789999999 899999999999999999999988 3589999999999999999999999999999999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
.+..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8654
No 158
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=3.4e-18 Score=108.78 Aligned_cols=67 Identities=25% Similarity=0.447 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+|||+|| |.++++++|+++|++||+|..|.| .+|||||+|.+.++|++|++. ++..|.|+.|.|.+|
T Consensus 1 ~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGL-SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCC-CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5999999 899999999999999999999988 268999999999999999985 899999999999885
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.3e-17 Score=118.19 Aligned_cols=75 Identities=24% Similarity=0.479 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+..+|||+|| |..+++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 84 ~~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 84 SDDTFNLFVGDL-NVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CTTCEEEEEESC-CTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCceEEECCC-CCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 456789999999 8999999999999999999999883 5799999999999999999999999999999999
Q ss_pred Eeec
Q 030662 76 YALK 79 (173)
Q Consensus 76 ~a~~ 79 (173)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9863
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=2.3e-17 Score=115.71 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=65.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeE--EEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVL--HVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~--~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
..+..+|||+|| |+++++++|+++|++| .|+ .|.| ++|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnL-p~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGL-PFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECC-CTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCC-CCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 456789999999 9999999999999999 676 7877 379999999999999999985 779999999999
Q ss_pred EEeecC
Q 030662 75 EYALKD 80 (173)
Q Consensus 75 ~~a~~~ 80 (173)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=4.9e-17 Score=122.38 Aligned_cols=78 Identities=19% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+..+|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 123 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASV-HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECC-CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCC-CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45689999999 8999999999999999999999883 67999999999999999999999999999999999
Q ss_pred eecCCCC
Q 030662 77 ALKDDSE 83 (173)
Q Consensus 77 a~~~~~~ 83 (173)
+.++...
T Consensus 202 a~~~~~~ 208 (216)
T 2qfj_A 202 AVTPPMP 208 (216)
T ss_dssp CSSCSST
T ss_pred ecCCCCC
Confidence 9877543
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=5e-17 Score=117.35 Aligned_cols=75 Identities=20% Similarity=0.409 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 1 s~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYL-PQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCC-CCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 4689999999 8999999999999999999999882 389999999999999999999999999999999999
Q ss_pred ecCC
Q 030662 78 LKDD 81 (173)
Q Consensus 78 ~~~~ 81 (173)
.+..
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8654
No 163
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=108.90 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCCCEEEEcCCCCCCCC-----------HHHHHHhhccCCCeEEEEee----CCeEEEEeCCHHHHHHHHHhcCCCee
Q 030662 3 NQRPTKTLFVINFDPIRTR-----------ERDIKRHFEPYGNVLHVRIR----RNFAFVQFETQEEATKALESTDRSKL 67 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~-----------e~~L~~~F~~~G~i~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~i 67 (173)
...++++|+|.|| ..... +++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|
T Consensus 11 ~~~~s~~l~l~Nl-~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNM-FHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESS-CCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcC-CCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567899999999 44332 57999999999999999873 79999999999999999999999999
Q ss_pred cCceEEEEEeecCC
Q 030662 68 VDRVISVEYALKDD 81 (173)
Q Consensus 68 ~g~~l~v~~a~~~~ 81 (173)
.|+.|.|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999998754
No 164
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=116.47 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCe----EEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV----LHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i----~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
.+..+|||+|| |+++++++|+++|++||.| ..|.| ++|||||+|.+.++|++||+. |++.|.++.|.
T Consensus 21 ~~~~~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 45789999999 9999999999999999975 46666 368999999999999999986 99999999999
Q ss_pred EEEeecC
Q 030662 74 VEYALKD 80 (173)
Q Consensus 74 v~~a~~~ 80 (173)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=8.2e-17 Score=126.32 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCeec-CceEEEEEeec
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALK 79 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~v~~a~~ 79 (173)
..++++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|. |+.|.|.|++.
T Consensus 204 ~~~~~~l~v~nl-~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 204 NPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCCCEEEEeCC-CCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 446789999999 8999999999999999999999983 489999999999999999999999999 99999999873
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1e-16 Score=125.83 Aligned_cols=78 Identities=28% Similarity=0.546 Sum_probs=72.0
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHH----HhhccCCCeEEEEee-----CCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIK----RHFEPYGNVLHVRIR-----RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~----~~F~~~G~i~~~~~~-----~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
+..++++|||+|| |.++++++|+ ++|++||.|..|.|. +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 5 ~~~~~~~l~V~nl-p~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNL-NEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 5678999999999 8999999966 899999999999983 59999999999999999999999999999999
Q ss_pred EEEeecCC
Q 030662 74 VEYALKDD 81 (173)
Q Consensus 74 v~~a~~~~ 81 (173)
|.|++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 167
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.3e-17 Score=112.26 Aligned_cols=75 Identities=24% Similarity=0.463 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
.+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+ ++..|.|..|.|.++
T Consensus 7 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGI-DVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 35689999999 8999999999999999999999883 5899999999999999998 999999999999999
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87653
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=7.8e-17 Score=119.56 Aligned_cols=78 Identities=26% Similarity=0.392 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|.+
T Consensus 102 ~~~~~l~V~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGI-KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECC-TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 35689999999 8999999999999999999999883 67999999999999999986 79999999999999
Q ss_pred eecCCCCC
Q 030662 77 ALKDDSER 84 (173)
Q Consensus 77 a~~~~~~~ 84 (173)
|.++....
T Consensus 180 a~~k~~~~ 187 (196)
T 1l3k_A 180 ALSKQEMA 187 (196)
T ss_dssp CC------
T ss_pred cCChhHhc
Confidence 98876543
No 169
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=7.5e-17 Score=119.84 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
.+.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 112 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 56799999999 8999999999999999999999883 67999999999999999999999999999999999
Q ss_pred eecCCC
Q 030662 77 ALKDDS 82 (173)
Q Consensus 77 a~~~~~ 82 (173)
+++...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=6.8e-17 Score=123.67 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 4 QRPTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
.+++++|||+|| |. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.++..
T Consensus 31 ~~~~~~l~V~nL-p~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESC-CTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCC-CcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 457899999999 88 99999999999999999999995 79999999999999999999999999999999999986
Q ss_pred CC
Q 030662 80 DD 81 (173)
Q Consensus 80 ~~ 81 (173)
..
T Consensus 110 ~~ 111 (229)
T 2adc_A 110 QN 111 (229)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1e-16 Score=115.59 Aligned_cols=74 Identities=22% Similarity=0.471 Sum_probs=68.6
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+..|.|+.|.|.++...
T Consensus 1 R~l~V~nl-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNL-DKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEE-ETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCC-CCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 58999999 8999999999999999999999883 589999999999999999999999999999999999765
Q ss_pred CC
Q 030662 81 DS 82 (173)
Q Consensus 81 ~~ 82 (173)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 172
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.4e-17 Score=110.44 Aligned_cols=71 Identities=15% Similarity=0.336 Sum_probs=59.2
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-----------CCeEEEEeCCHHHHHHHHHhcCCCeecCce
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-----------RNFAFVQFETQEEATKALESTDRSKLVDRV 71 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 71 (173)
.....++|||+|| |+++++++|+++|++||+|. +.+. +|||||+|.+.++|++||+.|+ .++|..
T Consensus 4 ~~~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~ 79 (114)
T 2dnl_A 4 GSSGSRKVFVGGL-PPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKL 79 (114)
T ss_dssp SSSCCCCEEEECC-CTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEE
T ss_pred CCCCCCEEEEcCC-CCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcE
Confidence 4567899999999 89999999999999999998 6551 6899999999999999999983 356665
Q ss_pred EEEEEe
Q 030662 72 ISVEYA 77 (173)
Q Consensus 72 l~v~~a 77 (173)
|.+..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 555443
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.3e-16 Score=115.96 Aligned_cols=72 Identities=17% Similarity=0.345 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEY 76 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~ 76 (173)
....+|||+|| |..+++++|.++|++||.|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|.|+|
T Consensus 92 ~~~~~l~v~nl-p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGL-PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECC-CTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcC-CCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34689999999 8999999999999999999999882 57999999999999999999999999999999999
Q ss_pred e
Q 030662 77 A 77 (173)
Q Consensus 77 a 77 (173)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.5e-16 Score=116.25 Aligned_cols=75 Identities=24% Similarity=0.427 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecC
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKD 80 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~ 80 (173)
.+..+|||+|| |..+++++|+++|++||.|..+.. .+|||||+|.+.++|++|++.|||..|.|+.|.|.||.++
T Consensus 97 ~~~~~l~v~nl-p~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNL-SFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESC-CSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCC-CCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 35689999999 899999999999999999988722 4799999999999999999999999999999999999865
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.7e-16 Score=120.31 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeec-CceEEEEEeec
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALK 79 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~v~~a~~ 79 (173)
.++++|||+|| |..+++++|+++|++|| .|..|.| .+|||||+|.+.++|++||+.|||..|. |+.|.|.|+++
T Consensus 149 ~~~~~l~V~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 149 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSCSEEEEECC-CTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCCEEEEeCC-CccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 45799999999 89999999999999999 9999999 5799999999999999999999999999 99999999986
Q ss_pred C
Q 030662 80 D 80 (173)
Q Consensus 80 ~ 80 (173)
+
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.7e-16 Score=117.71 Aligned_cols=77 Identities=25% Similarity=0.499 Sum_probs=68.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
+..+.++|||+|| |.++++++|+++|++||.|..|.|. +|||||+|.+.++|++||+. ++..|.|+.|.|
T Consensus 9 ~~~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGL-SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456789999999 8999999999999999999999882 57999999999999999986 999999999999
Q ss_pred EEeecCC
Q 030662 75 EYALKDD 81 (173)
Q Consensus 75 ~~a~~~~ 81 (173)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987654
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9.4e-17 Score=116.24 Aligned_cols=73 Identities=19% Similarity=0.428 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+..+|||+|| |..+++++|.++|++||.|..|.|. +|||||+|.+.++|++|++ |++..|.|+.|.|.||
T Consensus 86 ~~~~l~V~nl-p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGI-GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEE-CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCC-CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3578999999 8999999999999999999999883 5799999999999999998 8999999999999999
Q ss_pred ecC
Q 030662 78 LKD 80 (173)
Q Consensus 78 ~~~ 80 (173)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=118.13 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeec-CceEEEEEeec
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLV-DRVISVEYALK 79 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~-g~~l~v~~a~~ 79 (173)
+++++|||+|| |..+++++|+++|++|| .|..|.| .+|||||+|.+.++|++|++.|||..|. |+.|.|.|+++
T Consensus 118 ~~~~~l~v~nl-~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNI-PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCC-CTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCC-CCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 56899999999 89999999999999999 9999998 4799999999999999999999999999 99999999986
Q ss_pred C
Q 030662 80 D 80 (173)
Q Consensus 80 ~ 80 (173)
+
T Consensus 197 ~ 197 (198)
T 1qm9_A 197 T 197 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=3.8e-16 Score=106.19 Aligned_cols=75 Identities=27% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCCCEEEEcCCCCC-----CCCHHHHHHhhccCCCeEEEEee---------CCeEEEEeCCHHHHHHHHHhcCCCeecC
Q 030662 4 QRPTKTLFVINFDPI-----RTRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVD 69 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~-----~~~e~~L~~~F~~~G~i~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~i~g 69 (173)
..++++|+|.|| .. +.++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~s~~l~l~Nm-~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 5 KCPTKVVLLRNM-VGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GSCCSEEEEESS-SCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEEcC-CChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468899999999 42 23689999999999999999882 5899999999999999999999999999
Q ss_pred ceEEEEEeec
Q 030662 70 RVISVEYALK 79 (173)
Q Consensus 70 ~~l~v~~a~~ 79 (173)
+.|.|.++..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999975
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=4.3e-16 Score=112.72 Aligned_cols=72 Identities=26% Similarity=0.466 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecC--ceEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVD--RVISV 74 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g--~~l~v 74 (173)
.+..+|||+|| |..+++++|.++|++||.|..+.|. +|||||+|.+.++|++|++.|||..|.| ..|.|
T Consensus 87 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNL-PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESC-CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCCEEEeCC-CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 46789999999 8999999999999999999999882 4799999999999999999999999987 99999
Q ss_pred EEe
Q 030662 75 EYA 77 (173)
Q Consensus 75 ~~a 77 (173)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=2.7e-16 Score=114.41 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeec---CceEEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLV---DRVISV 74 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~l~v 74 (173)
.+..+|||+|| |..+++++|+++|++||.|..|.| ++|||||+|.+.++|++|++.|||..+. ++.|.|
T Consensus 93 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMI-SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCC-CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 35789999999 899999999999999999999988 2679999999999999999999998875 489999
Q ss_pred EEee
Q 030662 75 EYAL 78 (173)
Q Consensus 75 ~~a~ 78 (173)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.9e-16 Score=117.44 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+.++|||+|| |.++++++|+++|++||.|..|.| .+|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 27 ~~~~l~V~nL-p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSI-YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECC-CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECC-CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3579999999 899999999999999999999988 3789999999999999999999999999999999887
Q ss_pred ecC
Q 030662 78 LKD 80 (173)
Q Consensus 78 ~~~ 80 (173)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 644
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=117.79 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCC-CCCHHHHHHhhccCCCeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 6 PTKTLFVINFDPI-RTRERDIKRHFEPYGNVLHVRIR---RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 6 ~~~~l~V~nL~p~-~~~e~~L~~~F~~~G~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
.+++|||+|| |. .+++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+..|.|+.|.|.++....
T Consensus 2 ~~~~l~v~nl-p~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 2 GNSVLLVSNL-NPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCEEEEECC-CSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCcEEEEeCC-CcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 3589999999 88 99999999999999999999984 7999999999999999999999999999999999998654
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.64 E-value=4.3e-16 Score=121.48 Aligned_cols=74 Identities=34% Similarity=0.499 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
.+.++|||+|| |.++|+++|.++|++||.|..|.|. +|||||+|.+.++|++||..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNL-PTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 44679999999 8999999999999999999999984 89999999999999999999999999999999999874
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=7.9e-16 Score=115.31 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=64.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
.++|||+|| |..+++++|+++|++||.|..|.|. +|||||+|.+.++|++||+.+ +..|.|+.|.|.+++.
T Consensus 109 ~~~l~V~nL-p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGF-PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECC-CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCC-CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 478999999 8999999999999999999999883 689999999999999999865 5699999999998764
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=8.8e-16 Score=110.72 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--------CCeEEEEeCCHHHHHHHHHhcCCCeecCce--EEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--------RNFAFVQFETQEEATKALESTDRSKLVDRV--ISV 74 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~--l~v 74 (173)
.+..+|||+|| |..+++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.|||..|.|+. |.|
T Consensus 86 ~~~~~l~v~nl-~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGL-PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCC-CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 35689999999 8999999999999999999999882 589999999999999999999999999965 888
Q ss_pred EEe
Q 030662 75 EYA 77 (173)
Q Consensus 75 ~~a 77 (173)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 187
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.62 E-value=1.2e-15 Score=123.49 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCCCCCEEEEcC--CCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeec---Cc--eEE
Q 030662 3 NQRPTKTLFVIN--FDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLV---DR--VIS 73 (173)
Q Consensus 3 ~~~~~~~l~V~n--L~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~---g~--~l~ 73 (173)
...|+.+|||+| | ++.+++++|+++|++||+|..|.| .+|||||+|.+.++|++||+.|||+++. |. .|.
T Consensus 14 ~~~ps~~l~VgN~gl-~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGL-GNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSG-GGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCC-CCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 467899999999 6 688999999999999999999988 5899999999999999999999999883 44 466
Q ss_pred EEEee
Q 030662 74 VEYAL 78 (173)
Q Consensus 74 v~~a~ 78 (173)
|.++.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 66663
No 188
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=9.7e-16 Score=111.36 Aligned_cols=75 Identities=27% Similarity=0.468 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCce
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRV 71 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 71 (173)
.+.++|||+|| |.++++++|+++|++| | .|..+.+ .+|||||+|.+.++|++|+ .||+..|.|+.
T Consensus 2 r~~~~l~V~nL-p~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESC-CTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCC-CcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 35789999999 8999999999999999 7 7777777 5899999999999999999 89999999999
Q ss_pred EEEEEeecCC
Q 030662 72 ISVEYALKDD 81 (173)
Q Consensus 72 l~v~~a~~~~ 81 (173)
|.|.++....
T Consensus 80 i~v~~~~~~~ 89 (172)
T 2g4b_A 80 LKIRRPHDYQ 89 (172)
T ss_dssp CEEECCSSCC
T ss_pred eeecCCcccC
Confidence 9999876543
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=6.1e-16 Score=116.91 Aligned_cols=72 Identities=13% Similarity=0.296 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCe--EEEEee------CCeEEEEeCCHHHHHHHHHhcCCCeecCc----eE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNV--LHVRIR------RNFAFVQFETQEEATKALESTDRSKLVDR----VI 72 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i--~~~~~~------~g~afV~f~~~~~a~~A~~~l~g~~i~g~----~l 72 (173)
+|+.+|||+|| |+.+++++|+++|++||.| ..|.|. +|||||+|.+.++|.+||..|||.+|.|. .+
T Consensus 121 ~p~~~l~v~NL-p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNA-PLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEE-CTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCC-CCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999 8999999999999999998 788872 47999999999999999999999999876 57
Q ss_pred EEEEe
Q 030662 73 SVEYA 77 (173)
Q Consensus 73 ~v~~a 77 (173)
.|+||
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 88776
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.7e-15 Score=110.08 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee----------CCeEEEEeCCHHHHHHHHHhcCCCeec---CceE
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLV---DRVI 72 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~----------~g~afV~f~~~~~a~~A~~~l~g~~i~---g~~l 72 (173)
..++|||+|| |.++++++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|++..+. +..|
T Consensus 2 ~~~~l~V~nL-p~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQV-PRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 5689999999 8999999999999999999999872 479999999999999999999998875 6778
Q ss_pred EEEEeecCC
Q 030662 73 SVEYALKDD 81 (173)
Q Consensus 73 ~v~~a~~~~ 81 (173)
.|.++....
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888776554
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.4e-15 Score=112.84 Aligned_cols=75 Identities=27% Similarity=0.458 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccC----C-------CeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCce
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPY----G-------NVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRV 71 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~----G-------~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~ 71 (173)
...++|||+|| |..+++++|.++|++| | .|..+.+ .+|||||+|.+.++|++|| .||+..|.|+.
T Consensus 2 ~~~~~l~V~nL-p~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 2 AMARRLYVGNI-PFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred CceeEEEEcCC-CCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 35789999999 8999999999999999 5 6777776 5899999999999999999 79999999999
Q ss_pred EEEEEeecCC
Q 030662 72 ISVEYALKDD 81 (173)
Q Consensus 72 l~v~~a~~~~ 81 (173)
|.|.++....
T Consensus 80 i~v~~~~~~~ 89 (198)
T 2yh0_A 80 LKIRRPHDYQ 89 (198)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=2.6e-15 Score=117.86 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCC-CHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRT-RERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~-~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..+..+|||+|| |..+ ++++|.++|++||.|..|.| ++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 181 ~~~~~~l~v~nl-p~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRL-PPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECC-CTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecC-CcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 346789999999 8884 99999999999999999987 26899999999999999999999999999999999
Q ss_pred EeecCCC
Q 030662 76 YALKDDS 82 (173)
Q Consensus 76 ~a~~~~~ 82 (173)
|+.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987653
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.5e-15 Score=118.37 Aligned_cols=75 Identities=29% Similarity=0.451 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEee---------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEE
Q 030662 4 QRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIR---------RNFAFVQFETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~~~---------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
..+..+|||+|| |.. +++++|.++|++||.|..|.|. +|||||+|.+.++|++|| .|||..|.|+.|.
T Consensus 207 ~~~~~~l~v~nl-p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNL-STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEE-CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECC-CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 456789999999 899 9999999999999999999883 579999999999999999 9999999999999
Q ss_pred EEEeecC
Q 030662 74 VEYALKD 80 (173)
Q Consensus 74 v~~a~~~ 80 (173)
|.||+++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999875
No 194
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.9e-15 Score=109.33 Aligned_cols=71 Identities=24% Similarity=0.473 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+.++|||+|| |.++++++|.++|++||.|..|.| .+|||||+|.+.++|++||+. +..|.|+.|.|.++
T Consensus 2 ~~~~l~v~nL-p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGL-NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSC-CTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 5789999999 899999999999999999999998 258999999999999999985 57889999999887
Q ss_pred ec
Q 030662 78 LK 79 (173)
Q Consensus 78 ~~ 79 (173)
.+
T Consensus 79 ~~ 80 (167)
T 2cjk_A 79 IP 80 (167)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=3.9e-16 Score=114.02 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=66.8
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEE-----EEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLH-----VRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~-----~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
+..+.++|||+|| |.++++++|+++|.+||.|.. ... .+|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nL-p~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNL-NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECC-CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCC-CCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999 899999999999999986543 222 47999999999999999995 99999999999999
Q ss_pred EeecCC
Q 030662 76 YALKDD 81 (173)
Q Consensus 76 ~a~~~~ 81 (173)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998654
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=5.3e-15 Score=116.05 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.+.++|||+|| |..+++++|.++|++|| |..|.+ .+|||||+|.+.++|++|++.||+..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nL-p~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGL-PGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECC-CTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 35789999999 89999999999999999 999888 57999999999999999999999999999999999865
No 197
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-14 Score=97.33 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCC-------CCCCHHHHHHhhccCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 6 PTKTLFVINFDP-------IRTRERDIKRHFEPYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 6 ~~~~l~V~nL~p-------~~~~e~~L~~~F~~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
...+|-|.-. . ..+++++|+++|++||+|..|.| .+|||||+|.+.++|+.||+.+++ +.++.|.|+
T Consensus 9 ~~~~~~v~w~-~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWK-CKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp SSCEEEEECC-CCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred ccceEEEeee-ccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 3456666544 2 35899999999999999999998 489999999999999999998554 679999999
Q ss_pred EeecCCCC
Q 030662 76 YALKDDSE 83 (173)
Q Consensus 76 ~a~~~~~~ 83 (173)
|++.+...
T Consensus 86 ~a~~~~~~ 93 (100)
T 2d9o_A 86 WLEGQPQD 93 (100)
T ss_dssp CSSCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 198
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4e-15 Score=103.85 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=61.7
Q ss_pred CEEEEcCC----CCCCCCHHHHHHhhccCCCeEEEEe--------eCCeEEEEeCC----HHH----HHHHHH--hcCCC
Q 030662 8 KTLFVINF----DPIRTRERDIKRHFEPYGNVLHVRI--------RRNFAFVQFET----QEE----ATKALE--STDRS 65 (173)
Q Consensus 8 ~~l~V~nL----~p~~~~e~~L~~~F~~~G~i~~~~~--------~~g~afV~f~~----~~~----a~~A~~--~l~g~ 65 (173)
..|||+|| + +.+++++|+++|+.||+|..|.+ ++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 7 68999999999999999999988 58999999996 323 788888 78999
Q ss_pred eecCceEEEEEee
Q 030662 66 KLVDRVISVEYAL 78 (173)
Q Consensus 66 ~i~g~~l~v~~a~ 78 (173)
.|+|+.|.|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999865
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1.9e-14 Score=97.72 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=65.9
Q ss_pred CCCCCEEEEcCC-CCCCCC--------HHHHHHhhccCCCeEEEEee----------CCeEEEEeCCHHHHHHHHHhcCC
Q 030662 4 QRPTKTLFVINF-DPIRTR--------ERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDR 64 (173)
Q Consensus 4 ~~~~~~l~V~nL-~p~~~~--------e~~L~~~F~~~G~i~~~~~~----------~g~afV~f~~~~~a~~A~~~l~g 64 (173)
..|+++|.|.|+ ++..+. +++|+++|++||+|..|.|+ +|||||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 358899999997 222222 36899999999999999983 58999999999999999999999
Q ss_pred CeecCceEEEEEeecC
Q 030662 65 SKLVDRVISVEYALKD 80 (173)
Q Consensus 65 ~~i~g~~l~v~~a~~~ 80 (173)
..|.|+.|.|.++...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998643
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=1.2e-14 Score=114.37 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRI-------RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
+..+|||+|| |..+++++|.++|.+|| .|..|.| .+|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nl-p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNF-PPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECC-CTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 5689999999 89999999999999999 9999988 4799999999999999999999999999999999999
Q ss_pred ecCCC
Q 030662 78 LKDDS 82 (173)
Q Consensus 78 ~~~~~ 82 (173)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 86543
No 201
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=4.1e-14 Score=97.43 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCCCCCEEEEcCCCCCCCC----------HHHHHHhhccCCCeEEEEe----eCCeEEEEeCCHHHHHHHHHhcCCCeec
Q 030662 3 NQRPTKTLFVINFDPIRTR----------ERDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTDRSKLV 68 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~----------e~~L~~~F~~~G~i~~~~~----~~g~afV~f~~~~~a~~A~~~l~g~~i~ 68 (173)
...|+++|.|.|+ -.... +++|+++|++||.|..|.| .+|||||+|.+.++|++|++.|||..|+
T Consensus 3 ~p~ps~vv~L~Nm-~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 3 QPLATQCFQLSNM-FNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCSEEEEESS-CCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcEEEEECC-CChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567889999997 22111 2578999999999999998 3699999999999999999999999999
Q ss_pred CceEEEEEeec
Q 030662 69 DRVISVEYALK 79 (173)
Q Consensus 69 g~~l~v~~a~~ 79 (173)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999863
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=5.1e-14 Score=97.56 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCC-CCC---CCHHHHHHhhccCCCeEEEEee------------CCeEEEEeCCHHHHHHHHHhcCCCeec
Q 030662 5 RPTKTLFVINFD-PIR---TRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLV 68 (173)
Q Consensus 5 ~~~~~l~V~nL~-p~~---~~e~~L~~~F~~~G~i~~~~~~------------~g~afV~f~~~~~a~~A~~~l~g~~i~ 68 (173)
+|+++|+|.|+- |.+ -.+++|+++|++||+|..|.|. +||+||+|.+.++|++|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 478999999981 211 2368999999999999999882 279999999999999999999999999
Q ss_pred CceEEEEEeec
Q 030662 69 DRVISVEYALK 79 (173)
Q Consensus 69 g~~l~v~~a~~ 79 (173)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=4.1e-15 Score=100.87 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=55.0
Q ss_pred EcCCCCCCCCHHHHHHhh------------ccCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhcCCCeecCceE
Q 030662 12 VINFDPIRTRERDIKRHF------------EPYGNVLHVRIR-------RNFAFVQFETQEEATKALESTDRSKLVDRVI 72 (173)
Q Consensus 12 V~nL~p~~~~e~~L~~~F------------~~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l 72 (173)
+.+| ++.+++++|.++| ++||+|..|.|. +|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 20 ~~~l-~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGL-RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCc-ccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 3444 4455666666555 999999999993 6899999999999999999999999999999
Q ss_pred EEEEe
Q 030662 73 SVEYA 77 (173)
Q Consensus 73 ~v~~a 77 (173)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=2.3e-14 Score=111.58 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe-------eCCeEEEEeCCHHHHHHHHHhcCC-Ceec---CceEE
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI-------RRNFAFVQFETQEEATKALESTDR-SKLV---DRVIS 73 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g-~~i~---g~~l~ 73 (173)
.+..+|||+|| |..+++++|+++|++||.|..|.| .+|||||+|.+.++|.+||..||+ ..+. ++.|.
T Consensus 94 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNL-SPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCC-CCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999 899999999999999999999988 378999999999999999999955 4444 89999
Q ss_pred EEEeecCC
Q 030662 74 VEYALKDD 81 (173)
Q Consensus 74 v~~a~~~~ 81 (173)
|.++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99998654
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=89.79 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCC----CCC-CH---HHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 3 NQRPTKTLFVINFDP----IRT-RE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p----~~~-~e---~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
--+|..||+|.-+ + .+. .+ .+|.+.|.+||+|..++|..+.+||+|.+.++|.+||+ |||..|+|+.|+|
T Consensus 3 ~GPpd~tv~V~~~-~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 3 SGSSGGTVLVSIK-SSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCCSSCEEEEEEE-CSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCCeEEEEec-cCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 3578889999877 4 122 31 67999999999999999998999999999999999998 9999999999999
Q ss_pred EEeecCCCC
Q 030662 75 EYALKDDSE 83 (173)
Q Consensus 75 ~~a~~~~~~ 83 (173)
+++.+...+
T Consensus 81 ~lkt~dW~~ 89 (91)
T 2dnr_A 81 ALKSPSGPS 89 (91)
T ss_dssp EECCCSSCS
T ss_pred EeCCCCccc
Confidence 999987654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.7e-13 Score=92.76 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCCCCEEEEcCCCCCC-CCHHHHHHhhccCCCeEEEEeeC--CeEEEEeCC-HHHHHHHHHhcC--CCeecCceEEEE
Q 030662 2 ANQRPTKTLFVINFDPIR-TRERDIKRHFEPYGNVLHVRIRR--NFAFVQFET-QEEATKALESTD--RSKLVDRVISVE 75 (173)
Q Consensus 2 ~~~~~~~~l~V~nL~p~~-~~e~~L~~~F~~~G~i~~~~~~~--g~afV~f~~-~~~a~~A~~~l~--g~~i~g~~l~v~ 75 (173)
....+++.|||+|| +.. +++++|+++|++||+|..|.+.. ..|||.|.+ ..+|++|+..|| +.+|.|..++++
T Consensus 13 ~~~~~G~il~v~~l-~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 13 LEEKIGCLLKFSGD-LDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CSCCCCCEEEEEES-CCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccccCCeEEEEecC-CCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 34578999999999 788 99999999999999999999964 489999999 899999999995 678899999988
Q ss_pred Eee
Q 030662 76 YAL 78 (173)
Q Consensus 76 ~a~ 78 (173)
+..
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-11 Score=81.39 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCC------CCH---HHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEE
Q 030662 4 QRPTKTLFVINFDPIR------TRE---RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISV 74 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~------~~e---~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v 74 (173)
-+|..||+|.-+ +.. ..+ .+|.+.|.+||+|..+++...-+||+|.+.++|.+||+ |||.+|+|+.|+|
T Consensus 12 GPpD~Tv~V~~~-~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 12 GPLDATVVVNLQ-SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CCTTCEEEEEES-SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCCeEEEEec-CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 478899999888 422 221 56899999999999999988889999999999999998 9999999999999
Q ss_pred EEee
Q 030662 75 EYAL 78 (173)
Q Consensus 75 ~~a~ 78 (173)
++..
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8743
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.2e-09 Score=82.85 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCHHHHHHhhccCCCeEEEEee------------CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 20 TRERDIKRHFEPYGNVLHVRIR------------RNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~~~------------~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
-.+++|.+.|++||+|..+.|. +|++||+|.+.++|++|++.|||..+.|+.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999882 47999999999999999999999999999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.1e-08 Score=66.63 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccC-----CCeEEEEee--CCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEE
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRIR--RNFAFVQFETQEEATKALESTDRSKLVDRVISVE 75 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~-----G~i~~~~~~--~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~ 75 (173)
..++|-|-|| |.+++...|..+++++ |.|+++.|. -+-|+|+|.+...|-+|.-+|+|.+|.|+.|.+.
T Consensus 20 ~~rtiaL~~i-pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPL-SDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECC-CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecC-CCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4788999999 9999999999999999 999999884 5789999999999999998999999999999875
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1e-05 Score=53.82 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=63.5
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccC-----CCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPY-----GNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYA 77 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~-----G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a 77 (173)
.....++|.|.|| |..+.++.|+-+|++- |+|..+....+-|+|+|.+.+.|+..|+. ..+.|.+..|.|.-.
T Consensus 4 ~~~~~~~I~V~~l-Pp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 4 GSSGGVAVEVRGL-PPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp SCCCCCEEEEESC-CTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred CccCccEEEEECC-CCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 3456789999999 8899999999999872 58999988779999999999999999874 578889999999765
Q ss_pred ecC
Q 030662 78 LKD 80 (173)
Q Consensus 78 ~~~ 80 (173)
.+.
T Consensus 82 ~~~ 84 (104)
T 2dhx_A 82 PPR 84 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.34 E-value=1.4e-06 Score=58.12 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCCC-C----HHHHHHhhccCCCeEEEEeeCC--eEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 6 PTKTLFVINFDPIRT-R----ERDIKRHFEPYGNVLHVRIRRN--FAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~-~----e~~L~~~F~~~G~i~~~~~~~g--~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
-..+|+|+||+ ..+ . .+.++++|..|+++......+. =..|.|.+.++|.+|-..||+..++|..|+|.++.
T Consensus 4 ~pntLiitnl~-~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 4 GSSGLIACVAN-DDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCCEEEEECCC-GGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCceEEEecCC-HHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 34679999994 433 2 2578999999998887766444 36899999999999999999999999999999998
Q ss_pred cC
Q 030662 79 KD 80 (173)
Q Consensus 79 ~~ 80 (173)
+.
T Consensus 83 ~~ 84 (104)
T 1wey_A 83 TL 84 (104)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.08 E-value=1.8e-05 Score=52.10 Aligned_cols=55 Identities=25% Similarity=0.443 Sum_probs=48.6
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcC
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~ 63 (173)
.+.++| ++ |.++...||.++|+.||.|.--.|.-.-|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~F-P~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-EC-CTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eC-ChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 466777 99 88999999999999999887777788999999999999999998763
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=1.8e-05 Score=54.13 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHhcCCCeecC-ceEEEEEe
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALESTDRSKLVD-RVISVEYA 77 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~i~g-~~l~v~~a 77 (173)
....|.|-++ |. .....|...|++||+|++... ...+..|.|.+..+|++||.. ||..|.+ ..|-|...
T Consensus 23 ~~~wVtVFGF-p~-~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGF-PQ-ASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECC-CG-GGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECC-CH-HHHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 3567888898 64 457889999999999999887 357999999999999999984 9999975 55666664
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.84 E-value=1.9e-05 Score=52.10 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=47.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcC
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTD 63 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~ 63 (173)
+.|+| ++ |.++...||..+|+.||.|.--.|.-.-|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~F-P~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC-CTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC-ChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 45667 99 88999999999999999777667788999999999999999999764
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.66 E-value=8.4e-05 Score=51.52 Aligned_cols=71 Identities=14% Similarity=0.292 Sum_probs=55.1
Q ss_pred CCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEE-Ee---------------------eCCeEEEEeCCHHHHHHHHHhc
Q 030662 5 RPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHV-RI---------------------RRNFAFVQFETQEEATKALEST 62 (173)
Q Consensus 5 ~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~-~~---------------------~~g~afV~f~~~~~a~~A~~~l 62 (173)
.....|.|-+. |. .....+.+.|++||.|++- .+ ..++..|+|++..+|++||. .
T Consensus 5 ~~e~~VtVFGF-p~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 5 NGELAILVFGY-PE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp ---CEEEEECC-CG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred cCceEEEEEec-CH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 44567788888 64 5567789999999999772 11 24678999999999999998 4
Q ss_pred CCCeecCceEEEEEee
Q 030662 63 DRSKLVDRVISVEYAL 78 (173)
Q Consensus 63 ~g~~i~g~~l~v~~a~ 78 (173)
||..|.|..|-|....
T Consensus 82 NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCeEeCcEEEEEEECC
Confidence 9999999888887765
No 216
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.50 E-value=0.0004 Score=45.24 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee----------CCeEEEEeCCHHHHHHHHHhcCCCeecC---c--eE
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD---R--VI 72 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~----------~g~afV~f~~~~~a~~A~~~l~g~~i~g---~--~l 72 (173)
++|.|.+| |.++||+++.+.++...++.-.... -.-|+|.|.+.+++....+.++|+.+.+ . ..
T Consensus 2 ~KvVIRrL-PP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRL-PPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEE-CTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCC-CCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 57899999 8899999999999998876544441 2359999999999999999999998832 2 23
Q ss_pred EEEEee
Q 030662 73 SVEYAL 78 (173)
Q Consensus 73 ~v~~a~ 78 (173)
.|++|-
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 455553
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.0041 Score=40.82 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee----------CCeEEEEeCCHHHHHHHHHhcCCCeecC---c--e
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR----------RNFAFVQFETQEEATKALESTDRSKLVD---R--V 71 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~----------~g~afV~f~~~~~a~~A~~~l~g~~i~g---~--~ 71 (173)
+-+|.|..| |..+||+++.+.++.+-++.-.... -.-|+|.|.+.+++....+.++|..+.+ . .
T Consensus 9 ~~KvVIRrL-PP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRL-PPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECC-CSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCC-CCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 567899999 7899999999888876554222111 2358999999999999999999988733 2 3
Q ss_pred EEEEEee
Q 030662 72 ISVEYAL 78 (173)
Q Consensus 72 l~v~~a~ 78 (173)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4556553
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.78 E-value=0.00043 Score=57.85 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--e-CCeEEEEeCCHHHHHHHHHh
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--R-RNFAFVQFETQEEATKALES 61 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~-~g~afV~f~~~~~a~~A~~~ 61 (173)
.+.|+|. . |..+++.+|.++|++||.|..+.+ . ..||+|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~-~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-C-PEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-E-CCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-c-CCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 3689997 6 568999999999999999999988 2 34999999999999987654
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.24 E-value=0.00058 Score=47.99 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=34.6
Q ss_pred eCCeEEEEeCCHHHHHHHHHhc-CCCeecCceEEEEEeec
Q 030662 41 RRNFAFVQFETQEEATKALEST-DRSKLVDRVISVEYALK 79 (173)
Q Consensus 41 ~~g~afV~f~~~~~a~~A~~~l-~g~~i~g~~l~v~~a~~ 79 (173)
.+|+++|+|.+.++|++|++.| |+..|+| .|.|.++..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4789999999999999999999 9999999 999987764
No 220
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=95.73 E-value=0.018 Score=35.66 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCC-----CeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYG-----NVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G-----~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
+|||..--...+...+|..++..-+ .|-.+.|...|.||+... ..|+.+++.|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666432234677788888887544 467788889999999985 45778888999999999999988764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.56 E-value=0.033 Score=47.07 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=47.7
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCC
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g 64 (173)
...|+|+ + |..+...+|.++|+.||.|.-..|....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f-~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-F-PKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-C-CTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-C-CCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 7 668889999999999998776677888999999999999999998853
No 222
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.22 E-value=0.0061 Score=42.87 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=22.1
Q ss_pred eCCeEEEEeCCHHHHHHHHHhcCCC
Q 030662 41 RRNFAFVQFETQEEATKALESTDRS 65 (173)
Q Consensus 41 ~~g~afV~f~~~~~a~~A~~~l~g~ 65 (173)
.+|||||+|.+.++|++|++.+++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 4799999999999999999887753
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.35 E-value=0.56 Score=30.18 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=54.7
Q ss_pred CCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCC-------CeecCceEEEE
Q 030662 4 QRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDR-------SKLVDRVISVE 75 (173)
Q Consensus 4 ~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g-------~~i~g~~l~v~ 75 (173)
...++-|-|-|+ |..+-..++.-.....|---.|...-|.|+|.|.+.++...|++.|-+ .+|.|..+.|-
T Consensus 9 ikqnclikiini-pqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvi 86 (129)
T 4eyt_A 9 IKQNCLIKIINI-PQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVI 86 (129)
T ss_dssp -CCSCEEEEECC-CTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEE
T ss_pred hhhCcEEEEEec-CCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeee
Confidence 456788889999 888888888777777786677888899999999999999999887632 23456655553
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=88.91 E-value=1.1 Score=36.91 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=12.4
Q ss_pred eCCHHHHHHHHHhcCCCeecCceEE
Q 030662 49 FETQEEATKALESTDRSKLVDRVIS 73 (173)
Q Consensus 49 f~~~~~a~~A~~~l~g~~i~g~~l~ 73 (173)
|-..+..+.|..+|. .|+|..|.
T Consensus 148 FV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 148 FIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEeeccHHHHHHHHH--HcCCCEEC
Confidence 334455666666654 35666554
No 225
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=81.04 E-value=0.41 Score=33.60 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.6
Q ss_pred HHHHHHhhccCCCeEEEEeeCCeEEEEeC
Q 030662 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFE 50 (173)
Q Consensus 22 e~~L~~~F~~~G~i~~~~~~~g~afV~f~ 50 (173)
+++|.++|...|.|+-....+||+||+..
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeC
Confidence 35677889999999888888999999976
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=77.16 E-value=3.6 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=33.6
Q ss_pred EEEEcCCCCC-C--------CCHHHHHHhh--ccCCCeEEEEe-----eCCeEEEEeCCH-HHHHHHH
Q 030662 9 TLFVINFDPI-R--------TRERDIKRHF--EPYGNVLHVRI-----RRNFAFVQFETQ-EEATKAL 59 (173)
Q Consensus 9 ~l~V~nL~p~-~--------~~e~~L~~~F--~~~G~i~~~~~-----~~g~afV~f~~~-~~a~~A~ 59 (173)
+++|.|+ |. . ...++|.+.| ..|.++....+ ..|+|+|+|.+- .--..|+
T Consensus 14 mgIl~N~-~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNI-PTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECC-CCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEec-cccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 5678888 65 1 3457899977 89987765555 357899999953 3333443
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=68.70 E-value=17 Score=22.95 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=36.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhcc----CC-CeEEEEee---CCeEEEEeCCHHHHHHHHHhcCCC
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEP----YG-NVLHVRIR---RNFAFVQFETQEEATKALESTDRS 65 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~----~G-~i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~ 65 (173)
...||-.. ..-.|..+...+.+ .| +|..+.++ .||.||++...+++..+|..+.|.
T Consensus 10 ~~WYvv~~--~sG~E~~V~~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 10 HMIFAVRT--MVGQEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CCEEEEEE--CTTCHHHHHHHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred CeEEEEEE--ECChHHHHHHHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 34555444 23445544444432 23 36666664 899999999999998998887764
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=63.81 E-value=12 Score=21.61 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHh
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 61 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~ 61 (173)
..+|.|.++ .-..-...|+..+.+ ..|..+.+ ..+-+.|+|.+.++...+|+.
T Consensus 6 ~~~~~v~gm-~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGL-SCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESS-BCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCC-CCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 456888888 445556788888988 77877776 346778888866677777775
No 229
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.90 E-value=5.8 Score=23.72 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.7
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|+|++|...+..+||.|++
T Consensus 28 GtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEecCCcEEEEEEcc
Confidence 6777777678999999986
No 230
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=58.15 E-value=35 Score=22.11 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHhh-ccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeecCC
Q 030662 17 PIRTRERDIKRHF-EPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALKDD 81 (173)
Q Consensus 17 p~~~~e~~L~~~F-~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~~~ 81 (173)
+..++-++|.... ..||.-..+.....-..|-..+.++..+||+.|+-.. .-+.|+|-+..++.
T Consensus 25 ~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 25 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVINGS 89 (103)
T ss_dssp ESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECCC
T ss_pred cCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCCC
Confidence 4557777776555 4688877777778889999999999999999876542 23345555555443
No 231
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=56.70 E-value=24 Score=19.72 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=39.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHh
Q 030662 1 MANQRPTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (173)
Q Consensus 1 s~~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~ 61 (173)
|.+.....+|.|.++ .-..-...|...+.....|..+.+ ..+.+.|+|.. .+....+++.
T Consensus 1 ~~~~~~~~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 1 MLSEQKEIAMQVSGM-TCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp CCCCCEEEEEEEESC-CSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred CCccceEEEEEECCc-ccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444557888888 344445668888888766766655 56788888863 4555556654
No 232
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=54.52 E-value=7.4 Score=23.94 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=16.5
Q ss_pred CCeEEEEeeCCeEEEEeCCH
Q 030662 33 GNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~ 52 (173)
|.|++|......+||.|++.
T Consensus 45 GTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeccCCCEEEEEEcCC
Confidence 67888777789999999873
No 233
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=49.05 E-value=35 Score=19.37 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC----CHHHHHHHHHh
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALES 61 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~----~~~~a~~A~~~ 61 (173)
.+|.|.++ .-..-...|+..+.+...|..+.+ ..+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGM-TCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCc-CCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888 333445678888988877776655 5778899985 45667777765
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=48.35 E-value=25 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=26.3
Q ss_pred CeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCe
Q 030662 34 NVLHVRI---RRNFAFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 34 ~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~ 66 (173)
.|..+.. .+||-|||=.+..++..|++.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 4666665 48999999999999999998775543
No 235
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=48.25 E-value=11 Score=22.53 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=14.4
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|.|+.|....+.++|.|.+
T Consensus 32 gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred eEEEEEccCCcEEEEEEcc
Confidence 4566665567999999986
No 236
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=46.17 E-value=23 Score=19.81 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=35.8
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC---CHHHHHHHHHh
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALES 61 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~---~~~~a~~A~~~ 61 (173)
.+|.|.++ .-..-...|+..+.+...|..+.+ ..+-+.|+|. +.++..++|+.
T Consensus 4 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGM-DCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 35778888 334445678888988877776665 5678888885 34555566654
No 237
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.99 E-value=4.9 Score=23.68 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=13.3
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|.|.+|...+..|||.|++
T Consensus 26 gtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp EEECCCCSTTSEEEEEETT
T ss_pred EEEEEEecCCCEEEEEEcc
Confidence 4455554457889999986
No 238
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=42.55 E-value=26 Score=25.67 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.4
Q ss_pred eEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCee
Q 030662 35 VLHVRI---RRNFAFVQFETQEEATKALESTDRSKL 67 (173)
Q Consensus 35 i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i 67 (173)
|..+.. .+||-|||=.+..++..||+.+.+...
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 666666 489999999999999999998877543
No 239
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=48.41 E-value=5.3 Score=25.87 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.1
Q ss_pred eCCeEEEEeCCHHHHHHHHHhcC
Q 030662 41 RRNFAFVQFETQEEATKALESTD 63 (173)
Q Consensus 41 ~~g~afV~f~~~~~a~~A~~~l~ 63 (173)
..|.|+|.|.+.++...|++.|-
T Consensus 76 kegqamirfqnsdeqrlaiqkll 98 (137)
T 2lsl_A 76 KEGQAMIRFQNSDEQRLAIQKLL 98 (137)
Confidence 36899999999988888887763
No 240
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=42.14 E-value=34 Score=21.92 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCC
Q 030662 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (173)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g 64 (173)
+..+.-++|..... .||.-..+...+..-.|-..+.++.++||+.|+-
T Consensus 37 ~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 37 PRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp CSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhcc
Confidence 45577777766554 6888888877777889999999999999998654
No 241
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=40.27 E-value=5.9 Score=26.64 Aligned_cols=27 Identities=4% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CeEEEEeCCHHHHHHHHHhcCCCeecC
Q 030662 43 NFAFVQFETQEEATKALESTDRSKLVD 69 (173)
Q Consensus 43 g~afV~f~~~~~a~~A~~~l~g~~i~g 69 (173)
-++|++|++...+..|++.|++....|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 367888899999999999888866544
No 242
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=40.08 E-value=38 Score=21.43 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEeec
Q 030662 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
+..+.-++|..-.. .||.-..+...+..-.|-..+.++.++||+.|+-.. .-+.|+|-+...
T Consensus 21 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~~ 83 (94)
T 2jrh_A 21 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLSQ 83 (94)
T ss_dssp CSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEEC
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccCc-cccceEEEEEcC
Confidence 45577777765554 689888887778888999999999999999765432 223445555443
No 243
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=38.64 E-value=63 Score=19.33 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=36.3
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .++..++|+.+
T Consensus 5 ~~l~v~Gm-~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGM-HCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESC-CHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCc-CCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35667777 333334568888888877877666 57788898863 45566677654
No 244
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=38.06 E-value=20 Score=20.74 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=15.1
Q ss_pred CCeEEEEeeCCeEEEEeCCH
Q 030662 33 GNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~ 52 (173)
|+|.+|......++|.|.+.
T Consensus 22 GtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEcCC
Confidence 56777666677999999863
No 245
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.53 E-value=59 Score=20.30 Aligned_cols=43 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred CCCHHHHHHhhcc-CC-CeEEEEe---eCCe--EEEEeCCHHHHHHHHHh
Q 030662 19 RTRERDIKRHFEP-YG-NVLHVRI---RRNF--AFVQFETQEEATKALES 61 (173)
Q Consensus 19 ~~~e~~L~~~F~~-~G-~i~~~~~---~~g~--afV~f~~~~~a~~A~~~ 61 (173)
.++..+|+..+++ |+ .|..|.. +.++ |+|++....+|......
T Consensus 33 ~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 33 RATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp TCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 6788888888875 66 4555544 3454 89999887777665443
No 246
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.94 E-value=37 Score=22.06 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHhhc-cCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCC
Q 030662 17 PIRTRERDIKRHFE-PYGNVLHVRIRRNFAFVQFETQEEATKALESTDR 64 (173)
Q Consensus 17 p~~~~e~~L~~~F~-~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g 64 (173)
+..+.-++|+.... .||.-..+...+..-.|-..+.++.++||+.|+-
T Consensus 48 ~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 48 SRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp CSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhcc
Confidence 44567777765554 6887777777777788999999999999998654
No 247
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=36.26 E-value=51 Score=17.59 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC---CHHHHHHHHHh
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALES 61 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~---~~~~a~~A~~~ 61 (173)
+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|. +.+...++++.
T Consensus 4 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSI-TCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTC-SCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCc-ccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 4566677 333334668888888877776666 5678888886 34555556654
No 248
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=33.34 E-value=24 Score=21.30 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCeEEEEeeCCeEEEEeCCHHHH---HHHHHhcCCCeecCceEEEEEeec
Q 030662 33 GNVLHVRIRRNFAFVQFETQEEA---TKALESTDRSKLVDRVISVEYALK 79 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~~~a---~~A~~~l~g~~i~g~~l~v~~a~~ 79 (173)
|.|+.....+||+||+-.+..+. ..||+. .+..-.|..|..++...
T Consensus 5 G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~-~g~l~~G~~V~F~~~~g 53 (74)
T 2k5n_A 5 GTITTWFKDKGFGFIKDENGDNRYFHVIKVAN-PDLIKKDAAVTFEPTTN 53 (74)
T ss_dssp EEEEEEETTTTEEEEEESSSCEEEEEGGGBSS-GGGCCTTCEEEEEEEEC
T ss_pred eEEEEEECCCCeEEEecCCCCceEEEHhHccc-CCCCCCCCEEEEEEEeC
Confidence 55655555799999987753211 011111 12223566666666543
No 249
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=32.89 E-value=62 Score=17.54 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=33.9
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC---HHHHHHHHHh
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET---QEEATKALES 61 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~---~~~a~~A~~~ 61 (173)
.+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.
T Consensus 5 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 5 INLQLEGM-RCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEEECCc-ccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 35677787 333334668888888877776666 56788888874 3344455554
No 250
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=32.59 E-value=78 Score=25.29 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=39.7
Q ss_pred CEEEEcCCCCCCC----CHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHhcCCCeec
Q 030662 8 KTLFVINFDPIRT----RERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALESTDRSKLV 68 (173)
Q Consensus 8 ~~l~V~nL~p~~~----~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~i~ 68 (173)
..-+|||| ..-. ....+.++..+||.|..+.+- +.-+|...+.+.|+.++.. +...+.
T Consensus 15 ~lPliGnl-~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il~~-~~~~f~ 76 (494)
T 3swz_A 15 SLPLVGSL-PFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVLIK-KGKDFS 76 (494)
T ss_dssp CCCEEEEE-SSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHHTT-TTTTTB
T ss_pred CCCeEcch-HHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHHHh-CcHhhC
Confidence 34578998 4321 135678888899999888763 3556778889999988864 443433
No 251
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=31.46 E-value=28 Score=21.08 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=24.5
Q ss_pred CCeEEEEeeCCeEEEEeCCHHHHHHHHHhcC---C--CeecCceEEEEEeec
Q 030662 33 GNVLHVRIRRNFAFVQFETQEEATKALESTD---R--SKLVDRVISVEYALK 79 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~~~a~~A~~~l~---g--~~i~g~~l~v~~a~~ 79 (173)
|.|+-....+||+||+-.+.++.--=+.+|. + ....|..|..++...
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp EEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred EEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 4455555579999998876422111112222 2 223566766666543
No 252
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=31.34 E-value=67 Score=17.47 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|...+.....|..+.+ ..+.+.|+|.. .+....+|+.+
T Consensus 7 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGM-SCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCc-cCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888 333334567888888766776666 46788888863 45555666653
No 253
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=31.34 E-value=80 Score=21.68 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHHhhccCCCeE--EEEe---e------------------CCeEEEEeCCHHHHHHHHHh
Q 030662 25 IKRHFEPYGNVL--HVRI---R------------------RNFAFVQFETQEEATKALES 61 (173)
Q Consensus 25 L~~~F~~~G~i~--~~~~---~------------------~g~afV~f~~~~~a~~A~~~ 61 (173)
-..+|..||.+. +|.- + --|.+|+|.+.+..+++.++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 457899999654 4432 1 12899999999988887643
No 254
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.08 E-value=39 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeE
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVL 36 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~ 36 (173)
...+.|+|| |+.++...|..++.. ..+.
T Consensus 110 ~~~~iv~Nl-Py~iss~il~~ll~~-~~~~ 137 (271)
T 3fut_A 110 QGSLLVANL-PYHIATPLVTRLLKT-GRFA 137 (271)
T ss_dssp TTEEEEEEE-CSSCCHHHHHHHHHH-CCEE
T ss_pred CccEEEecC-cccccHHHHHHHhcC-CCCC
Confidence 346789999 999999999999977 5444
No 255
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=30.81 E-value=26 Score=24.34 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=15.5
Q ss_pred CCCeEEEEeeCCeEEEEeCCH
Q 030662 32 YGNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 32 ~G~i~~~~~~~g~afV~f~~~ 52 (173)
.|.|+-....+||+||+-++.
T Consensus 64 ~GtVKwFn~~KGfGFI~~ddG 84 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPADG 84 (147)
T ss_dssp EEEEEEEETTTTEEEEEESSS
T ss_pred ceEEEEEeCCCCeEEeccCCC
Confidence 466666555799999998763
No 256
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=30.44 E-value=75 Score=17.79 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=36.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.+
T Consensus 5 ~~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGM-TCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCG-GGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCe-eCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888 344445678888988877776665 46778888863 45556666653
No 257
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=30.43 E-value=64 Score=17.56 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=33.0
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.+
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGM-TCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECC-CHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 4667777 222234567788877766655544 57788888863 45556666653
No 258
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=36.51 E-value=11 Score=24.70 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCHHHHHHhhccCCCeEEEEee----CC---e--EEEEeCCHHHHHHHHHhcCCCe
Q 030662 20 TRERDIKRHFEPYGNVLHVRIR----RN---F--AFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~~~----~g---~--afV~f~~~~~a~~A~~~l~g~~ 66 (173)
.++++|..+..+.+ +..+.+. .| | -+-.|.+.++|.+|+..|....
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 34566777777765 3334331 22 2 2348999999999999887644
No 259
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=30.18 E-value=79 Score=21.10 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=17.2
Q ss_pred CCCeEEEEeeC--CeE--EEE-eCCHHHHHHHHHhcC
Q 030662 32 YGNVLHVRIRR--NFA--FVQ-FETQEEATKALESTD 63 (173)
Q Consensus 32 ~G~i~~~~~~~--g~a--fV~-f~~~~~a~~A~~~l~ 63 (173)
+=.|..|.|.. .+| ||. |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 44788888854 344 444 444544444444443
No 260
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=29.79 E-value=25 Score=20.61 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=13.8
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|.|+.....+||+||+-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 4555555579999999775
No 261
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=29.64 E-value=85 Score=18.14 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=37.4
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC----CHHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~----~~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|. +.+....+|+.+
T Consensus 11 ~~~~v~gm-~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGM-TCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCT-TTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCc-ccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888 344445678888888877877766 5678888886 345566667654
No 262
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=29.64 E-value=19 Score=27.44 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=23.8
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEE
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHV 38 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~ 38 (173)
...+.|+|| |+.++...|..++.....+..+
T Consensus 114 ~~~~vv~Nl-PY~iss~il~~ll~~~~~~~~~ 144 (279)
T 3uzu_A 114 PSLRIIGNL-PYNISSPLLFHLMSFAPVVIDQ 144 (279)
T ss_dssp CCEEEEEEC-CHHHHHHHHHHHGGGGGGEEEE
T ss_pred CceEEEEcc-CccccHHHHHHHHhccCCccEE
Confidence 346789999 9999999999999765444443
No 263
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=29.58 E-value=70 Score=17.11 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=35.9
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHh
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALES 61 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~ 61 (173)
.++.|.++ .-..-...|+..+.+...|..+.+ ..+.+.|+|.. .+....+++.
T Consensus 2 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGM-SCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCC-CSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCe-eCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35778888 344445678888888777776666 56788888863 4555566654
No 264
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=29.37 E-value=68 Score=21.42 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.5
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCC-CeEEEEeeCCeEEEEeCCHHH
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYG-NVLHVRIRRNFAFVQFETQEE 54 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G-~i~~~~~~~g~afV~f~~~~~ 54 (173)
.+..++|-.. +++..|.-|-..+.+.| +|....-..|.-||.|...+.
T Consensus 12 ~g~p~l~l~~-~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~ 60 (127)
T 2yh5_A 12 TGLPMLVVRG-PFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD 60 (127)
T ss_dssp TSCEEEEEES-CHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc
Confidence 3445666777 78899999999999999 677777789999999997653
No 265
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=29.08 E-value=32 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=14.1
Q ss_pred CCeEEEEeeCCeEEEEeCCH
Q 030662 33 GNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~ 52 (173)
|.|+.....+||+||+-.+.
T Consensus 4 G~Vk~fn~~kGfGFI~~~~g 23 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVEGG 23 (66)
T ss_dssp EEEEEEETTTTEEEEEETTE
T ss_pred eEEEEEECCCCeEEEecCCC
Confidence 55555555799999987653
No 266
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=28.31 E-value=1.2e+02 Score=19.57 Aligned_cols=53 Identities=8% Similarity=0.163 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC----CHHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~----~~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|+..+.+...|..+.+ ..+.+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGM-TCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSC-CSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCC-CCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3455555 233334556666666555554443 3566777775 345555555543
No 267
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=28.28 E-value=37 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCHHHHHHhhccCCCeEEEEe
Q 030662 20 TRERDIKRHFEPYGNVLHVRI 40 (173)
Q Consensus 20 ~~e~~L~~~F~~~G~i~~~~~ 40 (173)
.+++.|.+.|+.+|.|..-.+
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~M 24 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSM 24 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEE
T ss_pred hHHHHHHHHHhccCCceEeec
Confidence 467778899999999987766
No 268
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=27.92 E-value=78 Score=17.17 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=35.7
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.+
T Consensus 6 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGM-TCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTC-CSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCe-EcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 5667777 334445668888888877776666 56788888863 45556666653
No 269
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=27.85 E-value=35 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=13.7
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|.|+-....+||+||+-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 5555555579999998765
No 270
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.54 E-value=28 Score=21.23 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=13.6
Q ss_pred CCeEEEEeeCCeEEEEeCC
Q 030662 33 GNVLHVRIRRNFAFVQFET 51 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~ 51 (173)
|.|+-..-.+||+||+-.+
T Consensus 11 G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEETTTTEEEEEEGG
T ss_pred eEEEEEECCCCcEEEecCC
Confidence 5555555579999998764
No 271
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=27.36 E-value=1.2e+02 Score=18.99 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=37.7
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|+..+...-.|..+.+ ..+.+.|+|.. .++...+|+.+
T Consensus 10 ~~l~v~Gm-~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGM-DCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCC-CGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCc-CCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35677788 344556779999998877877666 56888999873 35556666653
No 272
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=27.28 E-value=85 Score=17.34 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=34.9
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.+
T Consensus 5 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGM-TCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCC-CSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCc-cCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777 333334568888888777776666 56788888863 45556666653
No 273
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=26.87 E-value=33 Score=20.55 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=14.2
Q ss_pred CCeEEEEeeCCeEEEEeCCH
Q 030662 33 GNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f~~~ 52 (173)
|.|+-....+||+||+-.+.
T Consensus 4 G~Vk~fn~~kGfGFI~~~~g 23 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREGD 23 (73)
T ss_dssp EEEEEEETTTTEEEEECTTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 55555555799999987653
No 274
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=26.18 E-value=63 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.277 Sum_probs=25.5
Q ss_pred eEEEEee---CCeEEEEeCCHHHHHHHHHhcCCC
Q 030662 35 VLHVRIR---RNFAFVQFETQEEATKALESTDRS 65 (173)
Q Consensus 35 i~~~~~~---~g~afV~f~~~~~a~~A~~~l~g~ 65 (173)
|..+.++ .||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5666664 899999999999888899887764
No 275
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=26.17 E-value=93 Score=17.43 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=36.2
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC----HHHHHHHHHhc
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET----QEEATKALEST 62 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~----~~~a~~A~~~l 62 (173)
.+|.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .+....+++.+
T Consensus 10 ~~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGM-TCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCC-CSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCc-cCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45778888 445556778888887766655444 67788888864 35556666653
No 276
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=24.92 E-value=42 Score=19.90 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.6
Q ss_pred cCCCeEEEEeeCCeEEEEeCCH
Q 030662 31 PYGNVLHVRIRRNFAFVQFETQ 52 (173)
Q Consensus 31 ~~G~i~~~~~~~g~afV~f~~~ 52 (173)
..|.|+.....+||+||+-.+.
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g 27 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDG 27 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTC
T ss_pred ccEEEEEEECCCCcEEEecCCC
Confidence 3466666555799999987653
No 277
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.92 E-value=90 Score=21.46 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCCHHHHHHhhcc-CC-CeEEEEe---eCCe--EEEEeCCHHHHHHHHH
Q 030662 19 RTRERDIKRHFEP-YG-NVLHVRI---RRNF--AFVQFETQEEATKALE 60 (173)
Q Consensus 19 ~~~e~~L~~~F~~-~G-~i~~~~~---~~g~--afV~f~~~~~a~~A~~ 60 (173)
.++..+|+..+++ |+ .|..|.. +.|+ |||.+....+|.....
T Consensus 89 ~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 89 KANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp TCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 5778888777765 45 4555543 3443 8999987766665443
No 278
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=24.89 E-value=90 Score=16.82 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC---HHHHHHHHHh
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET---QEEATKALES 61 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~---~~~a~~A~~~ 61 (173)
++.|.++ .-..-...|+..+.....|..+.+ ..+.+.|+|.. .++...+++.
T Consensus 3 ~~~v~gm-~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGM-TCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESS-CSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCc-ccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 4678888 333345678888888777776666 56778888864 3555566654
No 279
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=24.39 E-value=1.6e+02 Score=19.42 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=35.6
Q ss_pred CHHHHHHhhccCCCeEEEEeeCC----eEEEEeCCHHHHHHHHHhcCC
Q 030662 21 RERDIKRHFEPYGNVLHVRIRRN----FAFVQFETQEEATKALESTDR 64 (173)
Q Consensus 21 ~e~~L~~~F~~~G~i~~~~~~~g----~afV~f~~~~~a~~A~~~l~g 64 (173)
..+++.+.+..+.+|..|....| ++.|.+.+.++.+..+..+.+
T Consensus 77 ~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 77 DYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp CHHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 35778888889999999986432 567889999999999988765
No 280
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.23 E-value=67 Score=21.73 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=20.3
Q ss_pred EcCCCCCCCCHHHHHHhhc-cCC--CeEEEEe
Q 030662 12 VINFDPIRTRERDIKRHFE-PYG--NVLHVRI 40 (173)
Q Consensus 12 V~nL~p~~~~e~~L~~~F~-~~G--~i~~~~~ 40 (173)
|-.+ ...++++++..++. .++ +|..+.|
T Consensus 68 v~~~-~~GiSe~~a~~~v~~~~~~~~I~~v~l 98 (136)
T 2gu3_A 68 SKEA-KEGISEDKAAKIIKDEGLVSKQKEVHL 98 (136)
T ss_dssp EEEG-GGSCCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEH-hhCCCHHHHHHHHHHhCCccceeEEee
Confidence 5556 56799999999995 444 6777766
No 281
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=24.03 E-value=73 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCCe
Q 030662 45 AFVQFETQEEATKALESTDRSK 66 (173)
Q Consensus 45 afV~f~~~~~a~~A~~~l~g~~ 66 (173)
.-+.|.+.|+|.+..+. ||..
T Consensus 62 v~L~F~skE~AiayAek-~G~~ 82 (108)
T 2lju_A 62 VCLSFTTRELAIAYAVA-HKID 82 (108)
T ss_dssp SCEEESSHHHHHHHHHH-TTCE
T ss_pred ceEecCCHHHHHHHHHH-cCCE
Confidence 35899999999998876 7755
No 282
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.74 E-value=34 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHhh--ccCCCeEEEEe-----eC--CeEEEEeCCHHHHHHHH
Q 030662 25 IKRHF--EPYGNVLHVRI-----RR--NFAFVQFETQEEATKAL 59 (173)
Q Consensus 25 L~~~F--~~~G~i~~~~~-----~~--g~afV~f~~~~~a~~A~ 59 (173)
|..+| +.+|-|+++.| +. ..+++.|.+.++|.+|+
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 45555 35888998887 12 35688999877765543
No 283
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=23.67 E-value=1.1e+02 Score=19.59 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC----CHHHHHHHHHh
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE----TQEEATKALES 61 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~----~~~~a~~A~~~ 61 (173)
+|.|.++ .-..-...|+..+.+...|..+.+ ..+.+.|+|. +.++..++|+.
T Consensus 83 ~~~v~gm-~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 83 ELTITGM-TCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEESC-CSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHH
T ss_pred EEEEEec-cCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 3555555 222223445666655554544444 4566667665 33444555554
No 284
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=23.08 E-value=99 Score=16.69 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeC---CHHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFE---TQEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~---~~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|+..+.+...|..+.+ ..+.+.|+|. +.+....+++.+
T Consensus 5 ~~~v~gm-~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGM-TCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSC-CSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCe-ecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 4667777 333334567888888777777666 4677888886 344555666553
No 285
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.69 E-value=98 Score=21.48 Aligned_cols=42 Identities=21% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCCHHHHHHhhcc-CC-CeEEEEe---eCC--eEEEEeCCHHHHHHHHH
Q 030662 19 RTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALE 60 (173)
Q Consensus 19 ~~~e~~L~~~F~~-~G-~i~~~~~---~~g--~afV~f~~~~~a~~A~~ 60 (173)
.++..+|+..+++ |+ .|..|.. +.| -|||.+....+|.....
T Consensus 97 kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 97 RSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp TCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 5788888777765 55 4555543 344 38999987766665443
No 286
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.54 E-value=34 Score=22.70 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeC--CHHHHHHHHH
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFE--TQEEATKALE 60 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~--~~~~a~~A~~ 60 (173)
.+.+|+|.++ . ..+.++|..++..+|....-.|.+.+.+|... .....++|++
T Consensus 24 ~g~~i~itG~-~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~ 78 (129)
T 2d8m_A 24 QGVVVVLSGF-Q-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLG 78 (129)
T ss_dssp TTEEEEEESC-C-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHH
T ss_pred CCeEEEEeCC-C-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHH
Confidence 4678889888 4 56788999999999865444444444333333 3344445554
No 287
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis}
Probab=22.48 E-value=2.3e+02 Score=20.72 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCCCCCEEEEcCCCCCCCCHHHHHHhhccCC---CeEEEEe
Q 030662 3 NQRPTKTLFVINFDPIRTRERDIKRHFEPYG---NVLHVRI 40 (173)
Q Consensus 3 ~~~~~~~l~V~nL~p~~~~e~~L~~~F~~~G---~i~~~~~ 40 (173)
......+|||-++......+..|.+.|.+.| .|..+.+
T Consensus 3 ~~~~~pvvliHG~~~~~~~~~~l~~~L~~~g~~~~vi~~dv 43 (249)
T 3fle_A 3 AIKTTATLFLHGYGGSERSETFMVKQALNKNVTNEVITARV 43 (249)
T ss_dssp --CCEEEEEECCTTCCGGGTHHHHHHHHTTTSCSCEEEEEE
T ss_pred CCCCCcEEEECCCCCChhHHHHHHHHHHHcCCCceEEEEEE
Confidence 3445678999887334455678888888776 3555554
No 288
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.38 E-value=47 Score=26.32 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred EEcCCCCCC---CCHHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHH
Q 030662 11 FVINFDPIR---TRERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALE 60 (173)
Q Consensus 11 ~V~nL~p~~---~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~ 60 (173)
+|||| ..- -....+.++..+||.|..+.+- +.-+|...+.+.++.++.
T Consensus 20 ~iGn~-~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNL-LHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTG-GGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHHT
T ss_pred cccch-HhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHHH
Confidence 57886 321 2235577888899999888763 334566677888877764
No 289
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=22.35 E-value=75 Score=17.27 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCCHHHHHHHHHh
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFETQEEATKALES 61 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~~~~a~~A~~~ 61 (173)
+|.|.++ .-..-...++..+... .|..+.+ ..+.+.|+|...+....+++.
T Consensus 4 ~~~v~gm-~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 4 VLYVPDI-SCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEECGGG-GSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEEECCc-CcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 4666666 2222335577777766 5655544 578888888865444455554
No 290
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.20 E-value=90 Score=19.37 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCCHHHHHHhhcc-CC-CeEEEEe---eCC--eEEEEeCCHHHHHHHH
Q 030662 18 IRTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKAL 59 (173)
Q Consensus 18 ~~~~e~~L~~~F~~-~G-~i~~~~~---~~g--~afV~f~~~~~a~~A~ 59 (173)
..++..+|+..+++ |+ .|..|.. +.+ -|+|++...++|....
T Consensus 31 ~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 31 DRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp TTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 36888888887775 55 4555543 344 4899998766654443
No 291
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.19 E-value=1.3e+02 Score=19.43 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEe---eCCeEEEEeCCHHHHHHHHHhcCCCeecCceEEEEEee
Q 030662 9 TLFVINFDPIRTRERDIKRHFE-PYGNVLHVRI---RRNFAFVQFETQEEATKALESTDRSKLVDRVISVEYAL 78 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~-~~G~i~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~i~g~~l~v~~a~ 78 (173)
.+.|..+ .++++++|+.++. .||- ..+.| -.----|...+..+-+.|++. ..-.|..|.+.+.+
T Consensus 27 rF~Vs~~--~~~tweel~~mvk~~f~L-~~~~IkY~DEenD~V~i~Sq~E~eEAlkv---a~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 27 SFLVSDP--ENTTWADIEAMVKVSFDL-NTIQIKYLDEENEEVSINSQGEYEEALKM---AVKQGNQLQMQVHE 94 (101)
T ss_dssp EEEESCT--TTSCHHHHHHHHHHHHCC-SSBCCEEECTTSCEECCCSHHHHHHHHHH---HHHHTSEEEEECCB
T ss_pred EEEecCC--CCCCHHHHHHHHHHHcCC-CceEEEEecCCCCEEEEecHHHHHHHHHH---hccCCCEEEEEEee
Confidence 3445444 4899999998886 3551 11122 111123555667777777763 12245667777655
No 292
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=22.05 E-value=1e+02 Score=24.89 Aligned_cols=41 Identities=5% Similarity=0.029 Sum_probs=29.9
Q ss_pred HHHHHhhccCCCeEEEEe----eCCeEEEEeCCHHHHHHHHHhcC
Q 030662 23 RDIKRHFEPYGNVLHVRI----RRNFAFVQFETQEEATKALESTD 63 (173)
Q Consensus 23 ~~L~~~F~~~G~i~~~~~----~~g~afV~f~~~~~a~~A~~~l~ 63 (173)
..|.+++++.|.|....| +.|.+||.+-.+++|+++++.|+
T Consensus 316 ppiF~~l~~~G~v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~L~ 360 (394)
T 3kiz_A 316 PPLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAK 360 (394)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHHHH
Confidence 345566666666554333 67889999999999999988775
No 293
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=22.02 E-value=1.1e+02 Score=18.18 Aligned_cols=44 Identities=2% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEee--CCeEEEEeCC
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIR--RNFAFVQFET 51 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~--~g~afV~f~~ 51 (173)
.+.+++|.++ . ..+.++|+.+...+|....-.+. ....+|....
T Consensus 9 ~g~~~~i~g~-~-~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~ 54 (92)
T 4id3_A 9 KNCVIYINGY-T-KPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASN 54 (92)
T ss_dssp TTCEEEECSC-C-SSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSC
T ss_pred CCEEEEEeCC-C-CcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecC
Confidence 4678999886 3 34688899999999865443344 4455554444
No 294
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=21.74 E-value=1.1e+02 Score=19.26 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=33.6
Q ss_pred CCCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEeeCCeEEEEeC-----CHHHHHHHHH
Q 030662 6 PTKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRIRRNFAFVQFE-----TQEEATKALE 60 (173)
Q Consensus 6 ~~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~~~g~afV~f~-----~~~~a~~A~~ 60 (173)
.+.+|+|.++ .. .+.++|+.+...+|....-.+.+.+.+|... ......+|++
T Consensus 17 ~g~~i~isg~-~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~ 74 (107)
T 3l3e_A 17 HKVVVCVSKK-LS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKE 74 (107)
T ss_dssp TTCEEEECGG-GG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHH
T ss_pred CCeEEEEeCC-Ch-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHH
Confidence 4678888887 33 6788999999999865544454544444442 1244555654
No 295
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.70 E-value=60 Score=24.19 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=20.6
Q ss_pred CEEEEcCCCCCCCCHHHHHHhhccCCCe
Q 030662 8 KTLFVINFDPIRTRERDIKRHFEPYGNV 35 (173)
Q Consensus 8 ~~l~V~nL~p~~~~e~~L~~~F~~~G~i 35 (173)
..+.|+|| |+.++...|..++.....+
T Consensus 91 ~~~vvsNl-PY~i~~~il~~ll~~~~~~ 117 (252)
T 1qyr_A 91 PLRVFGNL-PYNISTPLMFHLFSYTDAI 117 (252)
T ss_dssp CEEEEEEC-CTTTHHHHHHHHHTTGGGE
T ss_pred ceEEEECC-CCCccHHHHHHHHhcCCCc
Confidence 35789999 9999988888888753333
No 296
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=21.69 E-value=42 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=10.7
Q ss_pred CCeEEEEeeCCeEEEEe
Q 030662 33 GNVLHVRIRRNFAFVQF 49 (173)
Q Consensus 33 G~i~~~~~~~g~afV~f 49 (173)
|.|+-....+||+||+-
T Consensus 11 G~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEeeCCCCeEEeEe
Confidence 44443333689999964
No 297
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=21.63 E-value=1.1e+02 Score=16.66 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCEEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC
Q 030662 7 TKTLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET 51 (173)
Q Consensus 7 ~~~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~ 51 (173)
..+|.|.++ .-..-...|...+.....|..+.+ ..+.+.|+|..
T Consensus 5 ~~~~~v~gm-~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGM-TCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETC-CTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEEEECCc-ccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECC
Confidence 456788888 444455678888988877776666 56788888874
No 298
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=21.44 E-value=89 Score=21.76 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCHHHHHHhhcc-CC-CeEEEEe---eCC--eEEEEeCCHHHHHHHHH
Q 030662 19 RTRERDIKRHFEP-YG-NVLHVRI---RRN--FAFVQFETQEEATKALE 60 (173)
Q Consensus 19 ~~~e~~L~~~F~~-~G-~i~~~~~---~~g--~afV~f~~~~~a~~A~~ 60 (173)
.++..+|+..+++ |+ .|..|.. +.| -|||.+....+|.+...
T Consensus 99 ~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 99 KADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred CCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 4666677666654 44 4555543 344 38999987776666543
No 299
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.16 E-value=54 Score=16.94 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.2
Q ss_pred CCCCHHHHHHhhccC
Q 030662 18 IRTRERDIKRHFEPY 32 (173)
Q Consensus 18 ~~~~e~~L~~~F~~~ 32 (173)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 358899999999765
No 300
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.04 E-value=82 Score=27.10 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHhhc----cCCCeEEEEee-------CCeEEEEeCCHHHHHHHHHhc
Q 030662 17 PIRTRERDIKRHFE----PYGNVLHVRIR-------RNFAFVQFETQEEATKALEST 62 (173)
Q Consensus 17 p~~~~e~~L~~~F~----~~G~i~~~~~~-------~g~afV~f~~~~~a~~A~~~l 62 (173)
+.+.+--+|..+|. .+|.|+++.|. ..+++|.|.+.++|.+|+..+
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 33444456777773 46788888871 346889999999999888765
No 301
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=20.49 E-value=1.5e+02 Score=23.28 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=30.4
Q ss_pred HHHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHh
Q 030662 22 ERDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (173)
Q Consensus 22 e~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~ 61 (173)
...|.++..+||.|..+.+ -+.-+|.+.+.+.++..+..
T Consensus 51 ~~~~~~l~~~YG~i~~~~~-g~~~~vvv~dp~~~~~il~~ 89 (482)
T 3k9v_A 51 HDTLAEYHKKYGQIFRMKL-GSFDSVHLGSPSLLEALYRT 89 (482)
T ss_dssp HHHHHHHHHHHCSEEEEEE-TTEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEEEcc-CCCCEEEEcCHHHHHHHHHh
Confidence 3457788889999988876 34567788899999888764
No 302
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=20.31 E-value=1.2e+02 Score=16.61 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEEEcCCCCCCCCHHHHHHhhccCCCeEEEEe--eCCeEEEEeCC--HHHHHHHHHhc
Q 030662 9 TLFVINFDPIRTRERDIKRHFEPYGNVLHVRI--RRNFAFVQFET--QEEATKALEST 62 (173)
Q Consensus 9 ~l~V~nL~p~~~~e~~L~~~F~~~G~i~~~~~--~~g~afV~f~~--~~~a~~A~~~l 62 (173)
+|.|.++ .-..-...|...+.+...|..+.+ ..+.+.|+|.. .+....+|+.+
T Consensus 6 ~~~v~gm-~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGM-DCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESC-CSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCc-CCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 5778888 344445678888888777776666 56788888875 34445555543
No 303
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=20.16 E-value=1.6e+02 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHhhccCCCeEEEEeeCCeEEEEeCCHHHHHHHHHh
Q 030662 23 RDIKRHFEPYGNVLHVRIRRNFAFVQFETQEEATKALES 61 (173)
Q Consensus 23 ~~L~~~F~~~G~i~~~~~~~g~afV~f~~~~~a~~A~~~ 61 (173)
..|.++..+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 36 ~~~~~l~~kYG~i~~~~~g-~~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG-NVESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET-TEEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHcCceeeccCC-CCCEEEEcCHHHHHHHHHh
Confidence 4577788899999988763 3467888999999998864
Done!