Query 030663
Match_columns 173
No_of_seqs 108 out of 227
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 48.1 89 0.0031 23.8 8.0 25 83-107 112-136 (194)
2 3syn_E ATP-binding protein YLX 28.7 36 0.0012 17.2 1.8 11 153-163 11-21 (23)
3 2vqe_T 30S ribosomal protein S 19.1 45 0.0015 23.6 1.5 16 1-16 6-22 (106)
4 2k9u_B Filamin-binding LIM pro 18.4 9.4 0.00032 20.3 -1.7 10 1-10 1-10 (26)
5 1pp9_G Ubiquinol-cytochrome C 16.8 92 0.0032 20.8 2.6 39 88-133 23-61 (81)
6 3sjd_D Golgi to ER traffic pro 16.4 55 0.0019 19.7 1.2 12 153-164 19-30 (46)
7 2dnf_A Doublecortin domain-con 15.0 66 0.0023 22.5 1.5 21 70-90 61-81 (108)
8 3zs9_C Golgi to ER traffic pro 14.2 1.1E+02 0.0037 17.7 2.0 12 153-164 9-20 (38)
9 2v2f_A Penicillin binding prot 13.9 50 0.0017 16.8 0.5 11 72-82 9-19 (26)
10 3bdu_A Putative lipoprotein; X 13.1 58 0.002 20.9 0.7 8 68-75 18-25 (62)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=48.07 E-value=89 Score=23.80 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=15.3
Q ss_pred cccCCCCccchhhhHHHHHHHHHHH
Q 030663 83 GFDMSTGGICGYLHDVIYITSFVQV 107 (173)
Q Consensus 83 G~DL~~~Gl~ey~~Diiylt~~v~~ 107 (173)
+..|-+.|+..|.=-=.|+..++..
T Consensus 112 ~~~Lvt~G~y~~vRHP~Y~G~~l~~ 136 (194)
T 4a2n_B 112 GHKLVKEGIYKNIRHPMYAHLWLWV 136 (194)
T ss_dssp TCCCCCSSTTTTBSSHHHHHHHHHH
T ss_pred CCeeeecCcchhccCccHHHHHHHH
Confidence 3344455677777777777766553
No 2
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=28.73 E-value=36 Score=17.25 Aligned_cols=11 Identities=45% Similarity=0.589 Sum_probs=7.2
Q ss_pred HHHHHHHHhhc
Q 030663 153 KKREKMEKKTS 163 (173)
Q Consensus 153 Krq~K~Ekr~~ 163 (173)
--+.|||||.+
T Consensus 11 tlrakmekrer 21 (23)
T 3syn_E 11 TLRAKMEKRER 21 (26)
T ss_pred HHHHHHHHHhh
Confidence 35677888753
No 3
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=19.10 E-value=45 Score=23.64 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.4
Q ss_pred CCc-hhHhhHHHHHHHH
Q 030663 1 MAN-QGAKKRKEENARH 16 (173)
Q Consensus 1 MA~-ks~Kk~a~~N~~~ 16 (173)
||| +|++|+...|++.
T Consensus 6 MAN~KSA~KRirq~ekr 22 (106)
T 2vqe_T 6 PKRNLSALKRHRQSLKR 22 (106)
T ss_dssp --CCCTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 565 7888888877653
No 4
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=18.41 E-value=9.4 Score=20.33 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=6.6
Q ss_pred CCchhHhhHH
Q 030663 1 MANQGAKKRK 10 (173)
Q Consensus 1 MA~ks~Kk~a 10 (173)
||++.+|+.+
T Consensus 1 ma~kpeKR~a 10 (26)
T 2k9u_B 1 MASKPEKRVA 10 (26)
T ss_dssp CCCCSSSSCE
T ss_pred CCCcchhhee
Confidence 7777777643
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.84 E-value=92 Score=20.81 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=23.5
Q ss_pred CCccchhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 030663 88 TGGICGYLHDVIYITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGF 133 (173)
Q Consensus 88 ~~Gl~ey~~Diiylt~~v~~~sl~s~~~W~l~L~IP~y~~Ykl~~~ 133 (173)
|..+..+..|.|. .+.-=+.+.+ +++++|..++|-+|.-
T Consensus 23 Qr~~~g~~~~~i~-----n~~RR~~~~~--l~v~pPfv~~Y~i~~W 61 (81)
T 1pp9_G 23 QRAFPHYFSKGIP-----NVLRRTRACI--LRVAPPFVAFYLVYTW 61 (81)
T ss_dssp BCSSTTHHHHHHH-----HHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cccccchHhhhhh-----HHHHHHHhcc--eeeehhHHHHHHHHHH
Confidence 4666666666543 2222222332 3889999999988764
No 6
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=16.35 E-value=55 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.9
Q ss_pred HHHHHHHHhhcc
Q 030663 153 KKREKMEKKTSR 164 (173)
Q Consensus 153 Krq~K~Ekr~~k 164 (173)
|++-.+|||++|
T Consensus 19 kaRLrRERR~aK 30 (46)
T 3sjd_D 19 KRRLLRERRQKK 30 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444445555544
No 7
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=14.95 E-value=66 Score=22.47 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.5
Q ss_pred CcccCCCCCcccccccCCCCc
Q 030663 70 KPTYTDDGELIDGGFDMSTGG 90 (173)
Q Consensus 70 rP~y~~~G~Lv~~G~DL~~~G 90 (173)
|--|+.+|+.|+.-.||..++
T Consensus 61 r~Lyt~~G~~V~~l~dl~dg~ 81 (108)
T 2dnf_A 61 HRLYTLEGKLVESGAELENGQ 81 (108)
T ss_dssp CEEEETTCCEESSTTSCCSSC
T ss_pred EEEEcCCCCEeCCHHHhCCCC
Confidence 556788999999999997665
No 8
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=14.24 E-value=1.1e+02 Score=17.71 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.5
Q ss_pred HHHHHHHHhhcc
Q 030663 153 KKREKMEKKTSR 164 (173)
Q Consensus 153 Krq~K~Ekr~~k 164 (173)
|++-.+|||++|
T Consensus 9 kaRlrRERR~aK 20 (38)
T 3zs9_C 9 KRRLLRERRQKK 20 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444555444
No 9
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=13.92 E-value=50 Score=16.77 Aligned_cols=11 Identities=27% Similarity=0.601 Sum_probs=8.3
Q ss_pred ccCCCCCcccc
Q 030663 72 TYTDDGELIDG 82 (173)
Q Consensus 72 ~y~~~G~Lv~~ 82 (173)
-||.+|+++..
T Consensus 9 IYD~~g~~i~~ 19 (26)
T 2v2f_A 9 IYDNKNQLIAD 19 (26)
T ss_pred EEeCCCCEeee
Confidence 47889988764
No 10
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=13.09 E-value=58 Score=20.87 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=5.7
Q ss_pred hcCcccCC
Q 030663 68 MAKPTYTD 75 (173)
Q Consensus 68 ~~rP~y~~ 75 (173)
-++|++|+
T Consensus 18 ~gKP~~D~ 25 (62)
T 3bdu_A 18 EGKPKVDD 25 (62)
T ss_dssp ESCCEECT
T ss_pred CCCcceeC
Confidence 46788875
Done!