BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030664
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G S+ LLNT +SW ++ KH PFIY + S+
Sbjct: 172 VASEQGSFD---GGSQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 212
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 152 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 192
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 158 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 198
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 172 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 212
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 172 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 212
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 172 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 212
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 88 IRANNSTFDCQHGPSECLLNTVEACAIDSWP--ELNKHFPFIYCIESL 133
+ + +FD G + LLNT +SW ++ KH PFIY + S+
Sbjct: 172 VASEQGSFD---GGDQGLLNTF----FNSWATTDIRKHLPFIYNLSSI 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,014,958
Number of Sequences: 62578
Number of extensions: 194312
Number of successful extensions: 379
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 8
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)