BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030665
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 21/120 (17%)
Query: 34 VRMIIFHSTFTWKHWVGLVLTSVAYAIPYQQLSAMAKPTYTDDGELIDGGFDMSTGGICG 93
V +++ S KH+ GL A P +L A +G L+ G +S G
Sbjct: 51 VDVVVNASNEDLKHYGGLAAALSKAAGP--ELQADCDQIVKREGRLLPGNATISKAGKLP 108
Query: 94 YLHDVIY-----------------ITSFVQVMSILSEKFWYTYLVIPAFGAYQSFGFIKG 136
Y H VI+ + VQ+ L+EK+ Y + IPA + FGF G
Sbjct: 109 Y-HHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISS-GVFGFPLG 166
>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|H Chain H, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|I Chain I, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|J Chain J, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|K Chain K, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|L Chain L, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 217
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 76 DGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYT 118
DG +I GG + C Y +D +Y + V + +L + W T
Sbjct: 43 DGLVIPGGESTTVRRCCAYENDTLY-NALVHFIHVLKKPIWGT 84
>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
pdb|2ABW|B Chain B, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
Length = 227
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 76 DGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYT 118
DG +I GG + C Y +D +Y + V + +L + W T
Sbjct: 45 DGLVIPGGESTTVRRCCAYENDTLY-NALVHFIHVLKKPIWGT 86
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 70 KPTYTDDGELIDGGFDMSTGGICGYLHD---------VIYITSFVQVMSILSEKFWYTYL 120
KP TD ++ F + G+CGY+ + +Y +SF +M +S + ++
Sbjct: 353 KPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFM 412
Query: 121 V 121
V
Sbjct: 413 V 413
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 70 KPTYTDDGELIDGGFDMSTGGICGYLHD---------VIYITSFVQVMSILSEKFWYTYL 120
KP TD ++ F + G+CGY+ + +Y +SF +M +S + ++
Sbjct: 353 KPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFM 412
Query: 121 V 121
V
Sbjct: 413 V 413
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 70 KPTYTDDGELIDGGFDMSTGGICGYLHD---------VIYITSFVQVMSILSEKFWYTYL 120
KP TD ++ F + G+CGY+ + +Y +SF +M +S + ++
Sbjct: 352 KPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFM 411
Query: 121 V 121
V
Sbjct: 412 V 412
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 70 KPTYTDDGELIDGGFDMSTGGICGYLHD---------VIYITSFVQVMSILSEKFWYTYL 120
KP TD ++ F + G+CGY+ + +Y +SF +M +S + ++
Sbjct: 352 KPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFM 411
Query: 121 V 121
V
Sbjct: 412 V 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,560,075
Number of Sequences: 62578
Number of extensions: 165744
Number of successful extensions: 312
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 7
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)