BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030666
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+ + P+ C C G L + H+ C + W K CE+C
Sbjct: 18 CRICHC--EGDDES---PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELC 64
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 75 GCSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106
C C G+L H+ C TW I N C+ICG
Sbjct: 23 ACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 96 IRGNMTCEICGSTADNIAGEQTNQSNSLAVEASSTSTAPVIFVETQNLW 144
+R + + + A +AG+ +Q+ SLA + T T P++ ++ N+W
Sbjct: 253 VRNDSANAVQTTVAGTVAGKPISQTVSLAAKERKTVTFPLVGLDRPNVW 301
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 96 IRGNMTCEICGSTADNIAGEQTNQSNSLAVEASSTSTAPVIFVETQNLW 144
+R + + + A +AG+ +Q+ SLA + T T P++ ++ N+W
Sbjct: 253 VRNDSANAVQTTVAGTVAGKPISQTVSLAAKERKTVTFPLVGLDRPNVW 301
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 96 IRGNMTCEICGSTADNIAGEQTNQSNSLAVEASSTSTAPVIFVETQNLW 144
+R + + + A +AG+ +Q+ SLA + T T P++ ++ N+W
Sbjct: 253 VRNDSANAVQTTVAGTVAGKPISQTVSLAAKERKTVTFPLVGLDRPNVW 301
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 30.4 bits (67), Expect = 0.58, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 96 IRGNMTCEICGSTADNIAGEQTNQSNSLAVEASSTSTAPVIFVETQNLW 144
+R + + + A +AG+ +Q+ SLA + T T P++ ++ N+W
Sbjct: 253 VRNDSANAVQTTVAGTVAGKPISQTVSLAAKERKTVTFPLVGLDRPNVW 301
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 64 NSQELMPPIELGCSCKGDL--GYAHKQCAETWFKIRGNMTCEICGSTADNIAGEQTNQSN 121
++ E + P+ L C G + G H Q E F ++CG + +
Sbjct: 107 SAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMF-------TQVCG--LRTVMPSNPYDAK 157
Query: 122 SLAVEASSTSTAPVIFVETQNLWHG 146
L + AS PVIF+E + L++G
Sbjct: 158 GLLI-ASIECDDPVIFLEPKRLYNG 181
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 64 NSQELMPPIELGCSCKGDL--GYAHKQCAETWFKIRGNMTCEICGSTADNIAGEQTNQSN 121
++ E + P+ L C G + G H Q E F ++CG + +
Sbjct: 106 SAGEFIAPLTLRXPCGGGIYGGQTHSQSPEAXF-------TQVCG--LRTVXPSNPYDAK 156
Query: 122 SLAVEASSTSTAPVIFVETQNLWHG 146
L + AS PVIF+E + L++G
Sbjct: 157 GLLI-ASIECDDPVIFLEPKRLYNG 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,939,634
Number of Sequences: 62578
Number of extensions: 130381
Number of successful extensions: 347
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 13
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)