BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030666
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G GN + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--GNGERLLSP----CDCTGTLGTVHKTCLEKWLSSSNTSYCELC 109
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G GN + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--GNGERLLSP----CDCTGTLGTVHKTCLEKWLSSSNTSYCELC 109
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 46 LGDKAERD-CRICHLGLE-GNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCE 103
LG +++R CRICH G + NS+ L+ P C C G LG HK C E W CE
Sbjct: 55 LGTQSDRPICRICHEGQDVCNSEGLLSP----CDCTGTLGTVHKSCLEKWLSSSNTSYCE 110
Query: 104 IC 105
+C
Sbjct: 111 LC 112
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+SQE L+ P C C G LG H+ C E W CE+C
Sbjct: 71 CRICH---EGSSQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+SQE L+ P C C G LG H+ C E W CE+C
Sbjct: 71 CRICH---EGSSQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+SQE L+ P C C G LG H+ C E W CE+C
Sbjct: 71 CRICH---EGSSQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G N + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--ANGESLLSP----CGCSGTLGAVHKSCLERWLSSSNTSYCELC 109
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+SQE L+ P C C G LG H+ C E W CE+C
Sbjct: 71 CRICH---EGSSQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 116
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G N + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--ANGENLLSP----CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G N + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--ANGENLLSP----CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG++QE L+ P C C G LG H+ C E W CE+C
Sbjct: 70 CRICH---EGSTQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 115
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 54 CRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG++QE L+ P C C G LG H+ C E W CE+C
Sbjct: 69 CRICH---EGSTQEDLLSP----CECTGTLGTIHRSCLEHWLSSSNTSYCELC 114
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--------MTCEIC 105
CRIC + +S L+ P C C G L Y H++C + W + + N TCE+C
Sbjct: 553 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELC 608
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--------MTCEIC 105
CRIC + +S L+ P C C G L Y H++C + W + + N TCE+C
Sbjct: 554 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELC 609
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--------MTCEIC 105
CRIC + +S L+ P C C G L Y H+ C + W + + N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--------MTCEIC 105
CRIC + +S L+ P C C G L Y H+ C + W + + N TCE+C
Sbjct: 552 CRICQMAAASSSNLLIEP----CKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELC 607
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH G N + L+ P C C G LG HK C E W CE+C
Sbjct: 64 CRICHEG--ANGECLLSP----CGCTGTLGAVHKSCLEKWLSSSNTSYCELC 109
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 27 SDSSSEVDLESGVLFVKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAH 86
S + S + + F + + ++ CRICH EG+ + P+ C C G L + H
Sbjct: 26 SKAGSPTSVSAPSRFPRTSVTPSSQDICRICHC--EGDDES---PLITPCHCTGSLHFVH 80
Query: 87 KQCAETWFKIRGNMTCEIC 105
+ C + W K CE+C
Sbjct: 81 QACLQQWIKSSDTRCCELC 99
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
C+IC G E EL+ P C C G + Y H+ C W RG+ TCE+C
Sbjct: 166 CKICFQGAEQG--ELLNP----CRCDGSVRYTHQLCLLKWISERGSWTCELC 211
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
C+IC G E EL+ P C C G + Y H+ C W RG+ TCE+C
Sbjct: 168 CKICFQGAEQG--ELLNP----CRCDGSVRYTHQLCLLKWISERGSWTCELC 213
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 19 GDIGAHGDSDSSSEVDLESGVLFVKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSC 78
+I G S S+ + + F + + + CRICH EG+ + P+ C C
Sbjct: 44 SNISKAGSSPPSTTAPVSA---FSRTSVTPSNQDICRICHC--EGDDES---PLITPCHC 95
Query: 79 KGDLGYAHKQCAETWFKIRGNMTCEIC 105
G L + H+ C + W K CE+C
Sbjct: 96 TGSLHFVHQACLQQWIKSSDTRCCELC 122
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
C+IC G E EL+ P C C G + Y H+ C W RG+ TCE+C
Sbjct: 170 CKICFQGAEQG--ELLNP----CRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 27 SDSSSEVDLESGVLFVKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAH 86
S + S + + F + + ++ CRICH EG+ + P+ C C G L + H
Sbjct: 26 SKAGSPTSVSAPSSFPRTSVTPSSQDICRICHC--EGDDES---PLITPCHCTGSLHFVH 80
Query: 87 KQCAETWFKIRGNMTCEIC 105
+ C + W K CE+C
Sbjct: 81 QACLQQWIKSSDTRCCELC 99
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 41 FVKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNM 100
F + + ++ CRICH EG+ + P+ C C G L + H+ C + W K
Sbjct: 67 FSRTSITPSSQDICRICHC--EGDDES---PLITPCHCTGSLHFVHQACLQQWIKSSDTR 121
Query: 101 TCEIC 105
CE+C
Sbjct: 122 CCELC 126
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 43 KLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTC 102
+L + + CRICH EG+ + P+ C C G L + H+ C W K C
Sbjct: 69 RLSVCPSTQDICRICHC--EGDEES---PLITPCRCTGTLRFVHQSCLHQWIKSSDTRCC 123
Query: 103 EIC 105
E+C
Sbjct: 124 ELC 126
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 48 DKAERD-CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
D AE D CR+C EG ++ P+ C C G + + H++C W K CE+C
Sbjct: 2 DTAEEDICRVCRS--EGTPEK---PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 48 DKAERD-CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
D AE D CR+C EG ++ P+ C C G + + H++C W K CE+C
Sbjct: 2 DTAEEDICRVCRS--EGTPEK---PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 48 DKAERD-CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
D AE D CR+C EG ++ P+ C C G + + H++C W K CE+C
Sbjct: 2 DTAEEDICRVCRS--EGTPEK---PLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELC 55
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 43 KLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTC 102
+L + + CRICH EG+ + P+ C C G L + H+ C W K C
Sbjct: 69 RLSVCPSTQDICRICHC--EGDEES---PLITPCRCTGTLRFVHQSCLHQWIKSSDTRCC 123
Query: 103 EIC 105
E+C
Sbjct: 124 ELC 126
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107
D+ + C IC G E +P C+C GDL Y H++C +TW + G C+ C +
Sbjct: 126 DEEGKQCWICRDG------ESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQT 178
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CRICH EG+ + P+ C C G L + H+ C + W K CE+C
Sbjct: 78 CRICHC--EGDDES---PLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELC 124
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--------MTCEIC 105
CRIC + + L+ P C C G L + H++C + W K++ TCE+C
Sbjct: 641 CRICQIAGGSPANPLLEP----CGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMC 696
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIA 113
CRIC G E EL+ P C C G + H+ C W RG+ +CE+C IA
Sbjct: 143 CRICFQGPEQG--ELLSP----CRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIA 196
Query: 114 GEQTN 118
N
Sbjct: 197 ISTKN 201
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR--------GNMTCEIC 105
CRIC + S L+ P C C G L + H++C + W K++ TCE+C
Sbjct: 659 CRICQIAGGSPSNPLLEP----CGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112
CRIC G E EL+ P C C G + H+ C W RG+ +CE+C +
Sbjct: 109 QCRICFQGPEQG--ELLSP----CRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVL 162
Query: 113 AGEQTNQSNSLAVEASSTSTAPVIFVETQNLWHGRRIMNFLLACMVFAFVISWLF 167
A + N L +A S + + +I +L + ISWL
Sbjct: 163 A---ISTKNPLQWQAISLTVIEKV-----------QIAAIVLGSLFLVASISWLI 203
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112
CRIC G E EL+ P C C G + H+ C W RG+ +CE+C +
Sbjct: 109 QCRICFQGPEQG--ELLSP----CRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVL 162
Query: 113 AGEQTNQSNSLAVEASSTSTAPVIFVETQNLWHGRRIMNFLLACMVFAFVISWLF 167
A + N L +A S + + +I +L + ISWL
Sbjct: 163 A---ISTKNPLQWQAISLTVIEKV-----------QIAAIVLGSLFLVASISWLI 203
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 76 CSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106
C C G+L H+ C TW I N C+ICG
Sbjct: 24 CGCTGELENVHRSCLSTWLTISRNTACQICG 54
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 35 LESGVLFVK-LHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETW 93
L+S LF K +HL +C IC+ L ++L P + +CK H C W
Sbjct: 1488 LDSLELFTKNVHLQFSGFEECAICYSILHAVDRKL--PSKTCPTCKNKF---HGACLYKW 1542
Query: 94 FKIRGNMTCEICGS 107
F+ GN TC +C S
Sbjct: 1543 FRSSGNNTCPLCRS 1556
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIA 113
CRIC G E EL+ P C C G + H+ C W RG +CE+C IA
Sbjct: 162 CRICFQGPEQG--ELLSP----CRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIA 215
Query: 114 GEQTNQSNSLAVEASSTSTAPVIFVETQNLWHGRRIMNFLLACMVFAFVISWLF 167
+ N L +A S + + +I +L + ISWL
Sbjct: 216 ---ISTKNPLQWQAISLTVIEKV-----------QIAAAILGSLFLIASISWLI 255
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIA 113
CRIC G E EL+ P C C G + H+ C W RG +CE+C IA
Sbjct: 163 CRICFQGPEQG--ELLSP----CRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIA 216
Query: 114 GEQTN----QSNSLAV 125
N Q+ SL V
Sbjct: 217 ISTKNPLQWQAISLTV 232
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 76 CSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
C+C G+L H QC TW + N C++C
Sbjct: 30 CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105
CR+C +S P C C G + Y H++C W CE+C
Sbjct: 8 CRVCRCEGAPDSPLFHP-----CKCTGSIRYVHQECLVEWLGHSKKTHCELC 54
>sp|O41933|MIR1_MHV68 E3 ubiquitin-protein ligase MIR1 OS=Murid herpesvirus 4 GN=K3 PE=1
SV=1
Length = 201
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107
C ICH EG P++ C CKG +H+ C W + TC +CG+
Sbjct: 8 CWICHQP-EG-------PLKRFCGCKGSCAVSHQDCLRGWLETSRRQTCALCGT 53
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 76 CSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106
C+CK + HK C E W N C+IC
Sbjct: 25 CNCKNEFKIVHKNCLEEWINFSHNTKCKICN 55
>sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus GN=Ush2a PE=1 SV=1
Length = 1512
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 10 DVSVSSDLSGDIGAHGDSDSSSEVDLESGVLFVKLHLGDKAERD-----CRICHLGLEGN 64
D + S + GDI H +S S G+ + G K R C CH L G+
Sbjct: 691 DCNPSGTVDGDITCHHNSGQCSCKANVIGLRCDRCSFGFKFLRSLNADGCEPCHCNLHGS 750
Query: 65 SQELMPPIELGCSCKGDL-GYAHKQCAETWFKIRGNMTCEIC-----GSTADNIAGEQTN 118
+L P+ C CK + G C E ++ + + CE+C G+ A + +T
Sbjct: 751 VNQLCDPLSGQCVCKKEAKGLRCDVCRENFYGLPWS-ACEVCDCNRAGTQAGTVCDAETG 809
Query: 119 Q 119
Q
Sbjct: 810 Q 810
>sp|Q997C2|LAP_MYXVL E3 ubiquitin-protein ligase LAP OS=Myxoma virus (strain Lausanne)
GN=LAP PE=3 SV=1
Length = 206
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 30 SSEVDLESGVLFVKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQC 89
++ V++++ V + L DK C IC + +++P C C+GD HK+C
Sbjct: 2 ATVVNMDTVVNLDDVSLADKC---CWICK-----EACDIVPNY---CKCRGDNKIVHKEC 50
Query: 90 AETWFK--IRGNMTCEICGS 107
E W + N +C IC S
Sbjct: 51 LEEWINTDVVKNKSCAICES 70
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%)
Query: 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWF--------KIRGNMTCEIC 105
CRIC G L P C C+G + Y H+ C W K ++ C+IC
Sbjct: 39 CRICR-GEATEDNPLFHP----CKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDIC 93
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5 PE=2
SV=1
Length = 281
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 44 LHLGDKAERDCRICHLGLEGN-SQELMPPIELGCSCKGDLGYAHKQCAETWF--KIRGNM 100
L L +R C +C E + + E + P C C+G + H+ C + W K RGN
Sbjct: 7 LALPQTMDRSCWVCFATDEDDRTAEWVRP----CRCRGSTKWVHQTCLQRWVDEKQRGNS 62
Query: 101 TCEI 104
T +
Sbjct: 63 TARV 66
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 76 CSCKGDLGYAHKQCAETWFKIR--GNMTCEICGS 107
C C+GD HK+C E W N +C IC +
Sbjct: 31 CKCRGDNKIVHKECLEEWINTDTVKNKSCAICET 64
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 51 ERDCRICHLGLEGN-SQELMPPIELGCSCKGDLGYAHKQCAETWF--KIRGNMTCEI 104
+R C +C E + + E + P C C+G + H+ C + W K RGN T +
Sbjct: 14 DRSCWVCFATDEDDRTAEWVRP----CRCRGSTKWVHQACLQRWVDEKQRGNSTARV 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,051,608
Number of Sequences: 539616
Number of extensions: 2277420
Number of successful extensions: 5837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5786
Number of HSP's gapped (non-prelim): 70
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)