Query 030666
Match_columns 173
No_of_seqs 198 out of 728
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02825 LAP/PHD finger-like p 99.8 6.5E-19 1.4E-23 141.3 6.2 58 49-114 6-63 (162)
2 smart00744 RINGv The RING-vari 99.8 3.3E-19 7.1E-24 117.6 3.0 49 53-106 1-49 (49)
3 PF12906 RINGv: RING-variant d 99.7 5.9E-19 1.3E-23 115.5 1.1 47 54-105 1-47 (47)
4 KOG3053 Uncharacterized conser 99.7 3E-18 6.6E-23 146.4 2.5 94 49-161 18-117 (293)
5 PHA02862 5L protein; Provision 99.7 1.6E-17 3.5E-22 131.7 3.4 60 51-118 2-65 (156)
6 COG5183 SSM4 Protein involved 99.6 2.6E-15 5.7E-20 143.6 5.2 69 42-115 3-71 (1175)
7 KOG1609 Protein involved in mR 99.6 1.7E-15 3.7E-20 128.5 3.3 62 50-114 77-138 (323)
8 PF13639 zf-RING_2: Ring finge 98.0 1.3E-06 2.7E-11 55.3 0.3 43 53-106 2-44 (44)
9 KOG4628 Predicted E3 ubiquitin 97.5 9E-05 2E-09 66.5 3.6 53 52-114 230-282 (348)
10 COG5243 HRD1 HRD ubiquitin lig 97.5 0.00011 2.3E-09 66.9 3.6 53 49-108 285-343 (491)
11 PF12678 zf-rbx1: RING-H2 zinc 97.4 0.00012 2.7E-09 51.4 2.7 49 51-106 19-73 (73)
12 PHA02929 N1R/p28-like protein; 97.4 0.00017 3.7E-09 61.7 4.0 57 49-112 172-229 (238)
13 PF13920 zf-C3HC4_3: Zinc fing 97.4 8.5E-05 1.8E-09 48.1 1.4 47 51-111 2-49 (50)
14 cd00162 RING RING-finger (Real 97.3 0.00024 5.2E-09 42.9 3.0 44 53-108 1-44 (45)
15 smart00184 RING Ring finger. E 97.1 0.0005 1.1E-08 39.9 2.5 39 54-105 1-39 (39)
16 PLN03208 E3 ubiquitin-protein 97.0 0.00064 1.4E-08 56.6 3.7 51 49-111 16-80 (193)
17 PF11793 FANCL_C: FANCL C-term 96.8 0.00057 1.2E-08 47.9 1.1 56 51-110 2-66 (70)
18 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0023 4.9E-08 47.0 4.2 57 50-111 20-83 (85)
19 KOG0802 E3 ubiquitin ligase [P 96.7 0.001 2.2E-08 62.3 2.8 49 50-107 290-338 (543)
20 COG5540 RING-finger-containing 96.7 0.0016 3.5E-08 58.0 3.4 51 49-110 321-372 (374)
21 PF00097 zf-C3HC4: Zinc finger 96.6 0.0011 2.3E-08 40.8 1.6 41 54-105 1-41 (41)
22 PHA02926 zinc finger-like prot 96.6 0.0014 2.9E-08 56.1 2.2 63 47-114 166-234 (242)
23 PF13923 zf-C3HC4_2: Zinc fing 96.1 0.0024 5.1E-08 39.3 1.0 38 54-105 1-39 (39)
24 smart00504 Ubox Modified RING 96.1 0.0077 1.7E-07 39.8 3.4 45 52-110 2-46 (63)
25 KOG0823 Predicted E3 ubiquitin 96.0 0.01 2.2E-07 50.7 4.3 52 48-111 44-96 (230)
26 COG5219 Uncharacterized conser 95.4 0.0031 6.6E-08 63.2 -0.9 61 45-111 1463-1524(1525)
27 PF14634 zf-RING_5: zinc-RING 94.5 0.034 7.4E-07 35.0 2.4 43 54-107 2-44 (44)
28 KOG1493 Anaphase-promoting com 94.3 0.022 4.8E-07 41.4 1.4 56 53-112 22-83 (84)
29 TIGR00599 rad18 DNA repair pro 93.6 0.05 1.1E-06 49.8 2.5 48 50-111 25-72 (397)
30 KOG0828 Predicted E3 ubiquitin 93.5 0.052 1.1E-06 51.3 2.5 52 51-109 571-633 (636)
31 KOG0804 Cytoplasmic Zn-finger 92.8 0.041 8.8E-07 51.2 0.7 49 50-110 174-222 (493)
32 KOG0827 Predicted E3 ubiquitin 92.8 0.083 1.8E-06 48.6 2.7 48 51-106 4-52 (465)
33 PF14570 zf-RING_4: RING/Ubox 91.6 0.12 2.7E-06 34.1 1.8 46 54-110 1-48 (48)
34 KOG1734 Predicted RING-contain 91.5 0.053 1.2E-06 47.8 -0.1 65 36-110 214-281 (328)
35 KOG0317 Predicted E3 ubiquitin 91.1 0.23 5E-06 43.8 3.5 47 50-110 238-284 (293)
36 PF15227 zf-C3HC4_4: zinc fing 90.6 0.13 2.8E-06 32.5 1.1 40 54-105 1-42 (42)
37 COG5194 APC11 Component of SCF 89.6 0.22 4.7E-06 36.6 1.7 28 83-112 56-83 (88)
38 PLN02436 cellulose synthase A 89.1 0.4 8.8E-06 48.9 3.8 57 50-114 35-93 (1094)
39 PLN02189 cellulose synthase 88.4 0.4 8.8E-06 48.7 3.2 57 50-114 33-91 (1040)
40 PLN02638 cellulose synthase A 87.8 0.68 1.5E-05 47.3 4.3 58 50-114 16-74 (1079)
41 PF13445 zf-RING_UBOX: RING-ty 87.6 0.31 6.7E-06 31.2 1.2 41 54-103 1-43 (43)
42 KOG4265 Predicted E3 ubiquitin 86.8 0.72 1.6E-05 41.7 3.5 50 49-112 288-338 (349)
43 PF14569 zf-UDP: Zinc-binding 85.5 1 2.2E-05 32.8 3.1 59 49-114 7-66 (80)
44 KOG1785 Tyrosine kinase negati 84.1 0.41 8.9E-06 44.5 0.7 52 49-112 367-418 (563)
45 PF08746 zf-RING-like: RING-li 82.9 0.68 1.5E-05 29.5 1.2 22 84-105 22-43 (43)
46 TIGR00570 cdk7 CDK-activating 82.6 1.6 3.4E-05 39.0 3.7 53 51-111 3-55 (309)
47 KOG0825 PHD Zn-finger protein 82.3 0.56 1.2E-05 46.8 0.9 55 49-114 121-175 (1134)
48 KOG1645 RING-finger-containing 81.7 1 2.2E-05 41.8 2.3 54 50-111 3-57 (463)
49 PF05883 Baculo_RING: Baculovi 81.1 0.57 1.2E-05 37.1 0.4 40 51-96 26-68 (134)
50 PF10367 Vps39_2: Vacuolar sor 79.7 0.65 1.4E-05 33.3 0.3 33 50-92 77-109 (109)
51 PLN02400 cellulose synthase 79.6 1.8 3.8E-05 44.4 3.4 58 50-114 35-93 (1085)
52 PF04564 U-box: U-box domain; 79.4 0.76 1.7E-05 31.9 0.6 47 51-110 4-50 (73)
53 KOG2930 SCF ubiquitin ligase, 77.8 1.3 2.8E-05 34.0 1.4 25 83-109 83-107 (114)
54 KOG0320 Predicted E3 ubiquitin 76.7 4.7 0.0001 33.6 4.5 48 49-108 129-176 (187)
55 KOG2177 Predicted E3 ubiquitin 76.4 1.2 2.6E-05 35.4 0.9 48 49-110 11-58 (386)
56 PLN02195 cellulose synthase A 76.3 3.1 6.7E-05 42.3 3.9 55 49-110 4-59 (977)
57 KOG2164 Predicted E3 ubiquitin 70.4 9.2 0.0002 36.4 5.3 55 51-117 186-245 (513)
58 KOG1039 Predicted E3 ubiquitin 69.9 4.2 9.1E-05 36.8 2.9 61 49-114 159-225 (344)
59 KOG1002 Nucleotide excision re 68.4 2.2 4.8E-05 41.1 0.8 52 47-110 532-586 (791)
60 COG5432 RAD18 RING-finger-cont 65.1 3.1 6.7E-05 37.4 1.1 49 50-112 24-72 (391)
61 KOG4692 Predicted E3 ubiquitin 63.6 6.8 0.00015 36.1 3.0 50 48-112 419-469 (489)
62 COG5175 MOT2 Transcriptional r 63.2 6.4 0.00014 36.2 2.7 56 45-111 8-65 (480)
63 KOG1428 Inhibitor of type V ad 60.8 9.5 0.00021 41.4 3.7 55 49-112 3484-3546(3738)
64 KOG4443 Putative transcription 59.7 5.3 0.00011 39.1 1.6 59 44-106 8-75 (694)
65 PLN02915 cellulose synthase A 58.3 8.9 0.00019 39.4 3.0 58 50-114 14-72 (1044)
66 COG5236 Uncharacterized conser 56.3 13 0.00029 34.2 3.5 52 47-113 57-111 (493)
67 KOG1952 Transcription factor N 55.7 27 0.00058 35.4 5.8 57 50-114 190-251 (950)
68 PF07800 DUF1644: Protein of u 55.1 17 0.00037 29.7 3.7 38 51-97 2-49 (162)
69 PF05290 Baculo_IE-1: Baculovi 54.1 8 0.00017 30.9 1.6 56 50-112 79-134 (140)
70 KOG1941 Acetylcholine receptor 53.9 4.8 0.0001 37.5 0.3 51 50-108 364-414 (518)
71 KOG4445 Uncharacterized conser 53.4 8 0.00017 34.9 1.6 52 51-111 115-187 (368)
72 KOG0287 Postreplication repair 52.9 5.1 0.00011 36.7 0.3 47 51-111 23-69 (442)
73 PF13894 zf-C2H2_4: C2H2-type 52.0 7.5 0.00016 19.9 0.8 12 101-112 2-13 (24)
74 PF10272 Tmpp129: Putative tra 48.0 21 0.00046 32.5 3.5 36 74-112 307-353 (358)
75 KOG1940 Zn-finger protein [Gen 45.9 13 0.00028 32.8 1.7 49 49-107 156-204 (276)
76 PF00096 zf-C2H2: Zinc finger, 45.1 11 0.00023 19.8 0.7 12 101-112 2-13 (23)
77 KOG0801 Predicted E3 ubiquitin 42.3 15 0.00032 30.6 1.4 25 50-78 176-200 (205)
78 KOG0802 E3 ubiquitin ligase [P 37.7 13 0.00029 35.0 0.6 44 49-110 477-520 (543)
79 PF12874 zf-met: Zinc-finger o 32.3 23 0.00049 18.9 0.7 12 101-112 2-13 (25)
80 PF06305 DUF1049: Protein of u 31.7 58 0.0013 21.5 2.9 23 147-169 18-40 (68)
81 KOG4159 Predicted E3 ubiquitin 31.7 31 0.00067 31.9 1.9 50 49-112 82-131 (398)
82 PF13912 zf-C2H2_6: C2H2-type 31.6 21 0.00045 19.4 0.5 14 100-113 2-15 (27)
83 KOG3899 Uncharacterized conser 30.9 33 0.00072 31.0 1.9 30 85-114 329-369 (381)
84 COG5574 PEX10 RING-finger-cont 30.8 43 0.00094 29.5 2.6 46 51-109 215-261 (271)
85 PF10571 UPF0547: Uncharacteri 30.3 23 0.00051 20.2 0.6 12 99-110 14-25 (26)
86 smart00451 ZnF_U1 U1-like zinc 30.3 25 0.00054 20.1 0.7 14 98-111 2-15 (35)
87 PF13465 zf-H2C2_2: Zinc-finge 29.5 28 0.00061 19.3 0.8 13 99-111 14-26 (26)
88 PF03854 zf-P11: P-11 zinc fin 29.4 24 0.00053 23.5 0.6 26 83-110 21-46 (50)
89 PF09630 DUF2024: Domain of un 28.9 30 0.00066 25.2 1.1 24 87-110 33-63 (81)
90 KOG3970 Predicted E3 ubiquitin 28.7 61 0.0013 28.4 3.1 52 47-108 46-103 (299)
91 PF15353 HECA: Headcase protei 27.9 33 0.00072 26.3 1.2 13 83-95 42-54 (107)
92 PF06937 EURL: EURL protein; 27.9 86 0.0019 27.8 3.9 46 44-96 23-68 (285)
93 smart00249 PHD PHD zinc finger 27.6 22 0.00048 20.9 0.2 30 53-91 1-30 (47)
94 KOG4172 Predicted E3 ubiquitin 27.6 22 0.00048 24.5 0.2 49 52-112 8-56 (62)
95 PF13878 zf-C2H2_3: zinc-finge 26.7 37 0.00079 21.2 1.1 15 98-112 12-26 (41)
96 PF14447 Prok-RING_4: Prokaryo 26.7 29 0.00062 23.6 0.6 44 51-110 7-50 (55)
97 PF06847 Arc_PepC_II: Archaeal 25.1 66 0.0014 23.7 2.3 23 141-163 65-89 (93)
98 PF05191 ADK_lid: Adenylate ki 22.2 45 0.00097 20.4 0.8 14 100-113 2-15 (36)
99 PF13913 zf-C2HC_2: zinc-finge 21.8 49 0.0011 18.4 0.9 11 100-110 3-13 (25)
100 KOG2114 Vacuolar assembly/sort 21.3 45 0.00098 33.9 1.1 46 52-114 841-887 (933)
101 PF01440 Gemini_AL2: Geminivir 21.2 15 0.00032 29.1 -1.8 35 70-107 31-65 (134)
102 PF03779 SPW: SPW repeat; Int 20.9 1.1E+02 0.0023 20.1 2.5 20 149-170 3-22 (51)
103 PF02891 zf-MIZ: MIZ/SP-RING z 20.6 71 0.0015 20.6 1.6 35 70-107 10-49 (50)
104 KOG3039 Uncharacterized conser 20.3 72 0.0016 28.2 2.0 50 51-110 221-270 (303)
No 1
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.76 E-value=6.5e-19 Score=141.28 Aligned_cols=58 Identities=26% Similarity=0.632 Sum_probs=51.3
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
..++.||||+++.+ .+.+||+|||+++|||++||++|++.+++.+||+|+++|+....
T Consensus 6 ~~~~~CRIC~~~~~--------~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 6 LMDKCCWICKDEYD--------VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKN 63 (162)
T ss_pred CCCCeeEecCCCCC--------CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEe
Confidence 34799999998743 34589999999999999999999999999999999999988754
No 2
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.76 E-value=3.3e-19 Score=117.56 Aligned_cols=49 Identities=47% Similarity=0.993 Sum_probs=44.3
Q ss_pred ceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCC
Q 030666 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106 (173)
Q Consensus 53 ~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~ 106 (173)
+||||+++.+ +++++++||.|+|+++|||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~-----~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-----EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-----CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999333 367899999999999999999999999999999999996
No 3
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.73 E-value=5.9e-19 Score=115.45 Aligned_cols=47 Identities=47% Similarity=1.090 Sum_probs=38.3
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccC
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC 105 (173)
||||+++.++ .++|+.||+|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~-----~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-----DEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-----SS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCC-----CCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999999875 3489999999999999999999999999999999998
No 4
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=3e-18 Score=146.41 Aligned_cols=94 Identities=22% Similarity=0.414 Sum_probs=76.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC------CcccccCCceeccccccccccccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG------NMTCEICGSTADNIAGEQTNQSNS 122 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~------~~~CEiC~~~y~~v~~~~~~~~~~ 122 (173)
+.|+.||||+.+++++ ....++.||.|+|+.||||++||.+|+++|. ..+|++|+++|..+.+..+...+.
T Consensus 18 e~eR~CWiCF~TdeDn---~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~~~~ 94 (293)
T KOG3053|consen 18 ELERCCWICFATDEDN---RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPFDRV 94 (293)
T ss_pred ccceeEEEEeccCccc---chhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChHHHH
Confidence 4589999999988753 2346999999999999999999999999985 389999999999999988877766
Q ss_pred hhhccccCCCCcccccccceeeecchhHHHHHHHHHHHH
Q 030666 123 LAVEASSTSTAPVIFVETQNLWHGRRIMNFLLACMVFAF 161 (173)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~w~~~~~lnfLla~mV~af 161 (173)
++ ..... -.++++||+++++.++
T Consensus 95 Le--------------~~d~~--i~r~cp~l~~g~~v~~ 117 (293)
T KOG3053|consen 95 LE--------------RLDIL--IFRLCPFLAAGIFVGS 117 (293)
T ss_pred HH--------------HhhhH--HhhcChHHHHHHHhhe
Confidence 64 12222 2469999999988766
No 5
>PHA02862 5L protein; Provisional
Probab=99.68 E-value=1.6e-17 Score=131.67 Aligned_cols=60 Identities=18% Similarity=0.467 Sum_probs=51.9
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc----cccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG----EQTN 118 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~----~~~~ 118 (173)
..+||||+++.++ -..||+|+|+++|||++||++|++.+++++||+|+++|...+. .+|.
T Consensus 2 ~diCWIC~~~~~e--------~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~yKpf~kW~ 65 (156)
T PHA02862 2 SDICWICNDVCDE--------RNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTYVSFKKWN 65 (156)
T ss_pred CCEEEEecCcCCC--------CcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEccccHHHhh
Confidence 3689999998643 1489999999999999999999999999999999999987655 4564
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.56 E-value=2.6e-15 Score=143.61 Aligned_cols=69 Identities=25% Similarity=0.545 Sum_probs=61.7
Q ss_pred eeecCCCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecccccc
Q 030666 42 VKLHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAGE 115 (173)
Q Consensus 42 ~k~~~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~~ 115 (173)
.+..+.|++.+.||||+.+..+ ++||..||+|+||++|+|++||..|+..+++++|||||++|+....+
T Consensus 3 ~~~~~mN~d~~~CRICr~e~~~-----d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 3 KENTPMNEDKRSCRICRTEDIR-----DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred CCCCCCCccchhceeecCCCCC-----CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 3446677888999999998775 57999999999999999999999999999999999999999887664
No 7
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.55 E-value=1.7e-15 Score=128.48 Aligned_cols=62 Identities=45% Similarity=0.873 Sum_probs=55.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
++..||||+.+.++.. +.+++.||.|+|++++||+.|+++|+..|++.+||+|++.|++...
T Consensus 77 ~~~~cRIc~~~~~~~~---~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~ 138 (323)
T KOG1609|consen 77 SGPICRICHEEDEESN---GLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGT 138 (323)
T ss_pred CCCcEEEEeccccccc---ccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecce
Confidence 3689999999877532 2289999999999999999999999999999999999999999866
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.02 E-value=1.3e-06 Score=55.30 Aligned_cols=43 Identities=28% Similarity=0.763 Sum_probs=35.0
Q ss_pred ceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCC
Q 030666 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106 (173)
Q Consensus 53 ~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~ 106 (173)
.|-||+++.+. ......+||+ ..+|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~----~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED----GEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHT----TSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcC----CCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 58999998864 2457788886 9999999999999864 999995
No 9
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=9e-05 Score=66.47 Aligned_cols=53 Identities=25% Similarity=0.483 Sum_probs=44.2
Q ss_pred CceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 52 RDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
..|-||+++-.. ++..-++||+ +..|..|...||... .+.|++||...+...+
T Consensus 230 ~~CaIClEdY~~----GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEK----GDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeeccccc----CCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCCCC
Confidence 499999999875 2345579999 999999999999987 5679999998776655
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00011 Score=66.88 Aligned_cols=53 Identities=28% Similarity=0.650 Sum_probs=42.3
Q ss_pred CCCCceeEeccCCCCCCC------CCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 49 KAERDCRICHLGLEGNSQ------ELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~------e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
.+.+.|-||+++.-.... ....|-.+||. +..|-+||+.|+..++ +|+||+.+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p 343 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRP 343 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCc
Confidence 457899999999443221 12346789998 9999999999999887 99999988
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.40 E-value=0.00012 Score=51.44 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=34.0
Q ss_pred CCceeEeccCCCCCC------CCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCC
Q 030666 51 ERDCRICHLGLEGNS------QELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICG 106 (173)
Q Consensus 51 e~~CRIC~~~~~~~~------~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~ 106 (173)
+..|-||++...+.. .+.-.....+|+ ...|..|+++|++.+. +|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 446999999885421 111122345787 8999999999997655 999996
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.39 E-value=0.00017 Score=61.70 Aligned_cols=57 Identities=19% Similarity=0.483 Sum_probs=41.4
Q ss_pred CCCCceeEeccCCCCCCCC-CCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQE-LMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e-~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
..+..|-||++...++... ..-....+|. +..|..|+.+|++.+ .+|++|+..+..+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~v 229 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFISV 229 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeEE
Confidence 4468999999986532100 0013556887 899999999999754 4999999998765
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.36 E-value=8.5e-05 Score=48.11 Aligned_cols=47 Identities=26% Similarity=0.613 Sum_probs=37.4
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... +.+..||+ .. +-..|+.+|++ ...+|++|++++..
T Consensus 2 ~~~C~iC~~~~~-------~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-------DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-------SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC-------ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 467999998753 57889998 66 88899999999 66799999998764
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.31 E-value=0.00024 Score=42.87 Aligned_cols=44 Identities=30% Similarity=0.800 Sum_probs=33.9
Q ss_pred ceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 53 ~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
.|.||++... ......||+ ..+|..|++.|++. ++..|++|+..
T Consensus 1 ~C~iC~~~~~------~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR------EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh------CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4889988763 124455687 77999999999987 66789999875
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.07 E-value=0.0005 Score=39.95 Aligned_cols=39 Identities=41% Similarity=0.933 Sum_probs=31.3
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccC
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC 105 (173)
|.||++.. .++..+||. ...|..|++.|++ .+..+|++|
T Consensus 1 C~iC~~~~-------~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-------KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-------CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 357888988 7789999999999 566689887
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.03 E-value=0.00064 Score=56.61 Aligned_cols=51 Identities=22% Similarity=0.498 Sum_probs=40.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc--------------CCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR--------------GNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k--------------~~~~CEiC~~~y~~ 111 (173)
.++..|-||++... ++.+++|. ...+..|+.+|+..+ +..+|++|++.+..
T Consensus 16 ~~~~~CpICld~~~-------dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR-------DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC-------CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 45788999998754 57889998 888999999998642 34689999988643
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.76 E-value=0.00057 Score=47.86 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC---------CcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG---------NMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~---------~~~CEiC~~~y~ 110 (173)
+..|.||+....++ +.....-|.-..=-+..|..||.+||.... .-+|+.|++++.
T Consensus 2 ~~~C~IC~~~~~~~----~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDD----GEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT---------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCC----CCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46799999875421 222233442111126799999999998531 136999999875
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.75 E-value=0.0023 Score=47.00 Aligned_cols=57 Identities=21% Similarity=0.493 Sum_probs=38.7
Q ss_pred CCCceeEeccCCCCCCC----C-CCCCee-cccccCCCCCccCHHHHHHHHHhc-CCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQ----E-LMPPIE-LGCSCKGDLGYAHKQCAETWFKIR-GNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~----e-~~~~l~-~pC~CkGsl~~vH~~CL~~W~~~k-~~~~CEiC~~~y~~ 111 (173)
++..|-||+...+..-. . .+-+++ --|+ ..+|..|+.+|++.. .+.+|++|++++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~-----H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCS-----HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCc-----cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 36689999887663110 0 112332 2233 679999999999974 46799999998764
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.001 Score=62.30 Aligned_cols=49 Identities=29% Similarity=0.708 Sum_probs=41.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~ 107 (173)
....|.||+++..... .-.+.++||. +..|..||++|++.+. +|++|+.
T Consensus 290 ~~~~C~IC~e~l~~~~--~~~~~rL~C~-----Hifh~~CL~~W~er~q--tCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGH--NITPKRLPCG-----HIFHDSCLRSWFERQQ--TCPTCRT 338 (543)
T ss_pred cCCeeeeechhhcccc--ccccceeecc-----cchHHHHHHHHHHHhC--cCCcchh
Confidence 3689999999987522 1337889998 9999999999999966 9999999
No 20
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0016 Score=57.97 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=41.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH-hcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK-IRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~-~k~~~~CEiC~~~y~ 110 (173)
..+..|-||++.-.- .+....+||+ +-.|..|+++|+. .|. .|++|+++..
T Consensus 321 ~~GveCaICms~fiK----~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIK----NDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcc----cceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCC
Confidence 446899999988653 2347789999 8999999999998 444 8999998753
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.64 E-value=0.0011 Score=40.80 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=34.2
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccC
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC 105 (173)
|.||++.... ....+||. ..++..|+.+|++..+...|++|
T Consensus 1 C~iC~~~~~~------~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED------PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS------EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC------CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 6789887653 22489999 88999999999998888899988
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=96.56 E-value=0.0014 Score=56.07 Aligned_cols=63 Identities=21% Similarity=0.412 Sum_probs=46.0
Q ss_pred CCCCCCceeEeccCCCCCC--CCCCCCeecccccCCCCCccCHHHHHHHHHhcC----CcccccCCceeccccc
Q 030666 47 GDKAERDCRICHLGLEGNS--QELMPPIELGCSCKGDLGYAHKQCAETWFKIRG----NMTCEICGSTADNIAG 114 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~--~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~----~~~CEiC~~~y~~v~~ 114 (173)
..+.+..|-||++..-+.. .+..-.+..+|. +.....|+.+|.+.+. .+.|++|+..+..+.+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3456799999998753210 111235778998 8888999999998752 4679999999987754
No 23
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.13 E-value=0.0024 Score=39.31 Aligned_cols=38 Identities=32% Similarity=0.751 Sum_probs=29.9
Q ss_pred eeEeccCCCCCCCCCCCC-eecccccCCCCCccCHHHHHHHHHhcCCcccccC
Q 030666 54 CRICHLGLEGNSQELMPP-IELGCSCKGDLGYAHKQCAETWFKIRGNMTCEIC 105 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~-l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC 105 (173)
|.||++... ++ ...+|+ ....++|+++|++. +.+|++|
T Consensus 1 C~iC~~~~~-------~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-------DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-------SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc-------CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 678887654 46 679998 88999999999988 3699987
No 24
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.06 E-value=0.0077 Score=39.79 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=36.9
Q ss_pred CceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 52 RDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
-.|.||.+... +|...||+ ..+-++|+++|++. +.+|++|+..+.
T Consensus 2 ~~Cpi~~~~~~-------~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK-------DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC-------CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 46899998765 47888885 77899999999987 458999998763
No 25
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.01 Score=50.75 Aligned_cols=52 Identities=25% Similarity=0.499 Sum_probs=42.5
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCC-cccccCCceecc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN-MTCEICGSTADN 111 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~-~~CEiC~~~y~~ 111 (173)
+...-+|-||++... ++.++.|. ++.==.||-+|+.++.+ +.|++||.+...
T Consensus 44 ~~~~FdCNICLd~ak-------dPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK-------DPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccccC-------CCEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 356789999998754 69999998 66666999999999875 667999987654
No 26
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.40 E-value=0.0031 Score=63.17 Aligned_cols=61 Identities=25% Similarity=0.529 Sum_probs=41.0
Q ss_pred cCCCCCCCceeEeccCCCCCCCCCCCCeeccc-ccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 45 HLGDKAERDCRICHLGLEGNSQELMPPIELGC-SCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 45 ~~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC-~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
|..-++...|-||+.-...-+ ..-|-. -| -|| .-.|-.||-+||+.+++.+|++|+.++..
T Consensus 1463 ~~~fsG~eECaICYsvL~~vd--r~lPsk-rC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVD--RSLPSK-RCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHh--ccCCcc-ccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 334456789999996654210 011111 12 132 45899999999999999999999988754
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.46 E-value=0.034 Score=35.05 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=35.6
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCc
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~ 107 (173)
|-||++...+ ...+++++|. ..+..+|+.+.. .....|++|++
T Consensus 2 C~~C~~~~~~----~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSE----ERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccC----CCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 7789988732 2468999998 899999999999 66789999985
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.022 Score=41.36 Aligned_cols=56 Identities=23% Similarity=0.523 Sum_probs=40.8
Q ss_pred ceeEeccCCCCCC-----CCCCCCeecccccCCCCCccCHHHHHHHHHhcCC-cccccCCceeccc
Q 030666 53 DCRICHLGLEGNS-----QELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN-MTCEICGSTADNI 112 (173)
Q Consensus 53 ~CRIC~~~~~~~~-----~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~-~~CEiC~~~y~~v 112 (173)
.|-||+.+-+..- .+.+=||+.+ .|+ ..+|..|+.+|+..+++ -.|+.|+++++..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 8999998765310 0123467666 552 67999999999998875 6999999998753
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.56 E-value=0.05 Score=49.84 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
....|.||++... ++.++||. +.+...|+..|+..++ .|++|+..+..
T Consensus 25 ~~l~C~IC~d~~~-------~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD-------VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh-------CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCcccc
Confidence 4679999998764 46788998 8888999999998754 89999998764
No 30
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.052 Score=51.28 Aligned_cols=52 Identities=23% Similarity=0.553 Sum_probs=39.0
Q ss_pred CCceeEeccCCCCCCC----------CCCCCeecccccCCCCCccCHHHHHHHHH-hcCCcccccCCcee
Q 030666 51 ERDCRICHLGLEGNSQ----------ELMPPIELGCSCKGDLGYAHKQCAETWFK-IRGNMTCEICGSTA 109 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~----------e~~~~l~~pC~CkGsl~~vH~~CL~~W~~-~k~~~~CEiC~~~y 109 (173)
..+|-||....+--.. -..+-+.+||. +..|+.||++|.+ .| ..|++|+...
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk--l~CPvCR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK--LICPVCRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc--ccCCccCCCC
Confidence 6899999987653111 12345677999 9999999999998 44 4899998764
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.76 E-value=0.041 Score=51.21 Aligned_cols=49 Identities=16% Similarity=0.541 Sum_probs=37.8
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+-+.|-+|++..+++. +..+..+|. .-.|-.|+.+|-.. +|++|++.-.
T Consensus 174 ELPTCpVCLERMD~s~---~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSST---TGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccc---cceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 4789999999998743 457788998 88999999999665 5666655433
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.083 Score=48.59 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=34.0
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCC-cccccCC
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN-MTCEICG 106 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~-~~CEiC~ 106 (173)
-..|.||-+.-..+ + +-.-+..|. ..+|..||.+||..--. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~--~-~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPND--H-ELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccc--c-ccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 46899995443321 1 112234576 78999999999998654 7999999
No 33
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.62 E-value=0.12 Score=34.08 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=23.0
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC--CcccccCCceec
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG--NMTCEICGSTAD 110 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~--~~~CEiC~~~y~ 110 (173)
|.+|.+..+. .+.-..||.|. ++-|+.=|.+++. +-.|+-|++.|.
T Consensus 1 cp~C~e~~d~-----~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE-----TDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C-----CCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc-----CCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 5567776643 34456799984 5889999999874 789999999984
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.053 Score=47.78 Aligned_cols=65 Identities=25% Similarity=0.534 Sum_probs=48.4
Q ss_pred ccCccceeecCCCCCCCceeEeccCCCCCCCCC---CCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 36 ESGVLFVKLHLGDKAERDCRICHLGLEGNSQEL---MPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 36 ~~g~~~~k~~~~~~~e~~CRIC~~~~~~~~~e~---~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++|+|.. |++ ...|-+|-...+.+..|+ ++.-.+-|+ ...|+-|++-|--.-.+.+|+-||++..
T Consensus 214 ~~glPtk--hl~---d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 214 PSGLPTK--HLS---DSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCC--CCC---cchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4566553 554 568999987765433222 245677888 8999999999999988899999998854
No 35
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.23 Score=43.84 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=39.3
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
..+.|-+|++... +|--+||. +..==.|+..|...|. .|++|+..++
T Consensus 238 a~~kC~LCLe~~~-------~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ 284 (293)
T KOG0317|consen 238 ATRKCSLCLENRS-------NPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQ 284 (293)
T ss_pred CCCceEEEecCCC-------CCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCC
Confidence 4589999999864 56778998 6666699999999988 4999998876
No 36
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=90.62 E-value=0.13 Score=32.47 Aligned_cols=40 Identities=28% Similarity=0.662 Sum_probs=28.1
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCC--cccccC
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN--MTCEIC 105 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~--~~CEiC 105 (173)
|-||++-.. +|..++|. .-.=+.||++|.+.... ..|++|
T Consensus 1 CpiC~~~~~-------~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-------DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-------SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-------CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 668887764 58999998 66668999999987665 489887
No 37
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.63 E-value=0.22 Score=36.57 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=24.7
Q ss_pred CccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 83 GYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 83 ~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
...|-.|+.+|++.|+ .|+++.+++..-
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~~ 83 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVLA 83 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEEe
Confidence 6789999999999987 999999998643
No 38
>PLN02436 cellulose synthase A
Probab=89.12 E-value=0.4 Score=48.86 Aligned_cols=57 Identities=25% Similarity=0.632 Sum_probs=42.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccc-cCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCS-CKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~-CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
...+|+||-++.... +.|+++ -.|. | +| |=+.|. ..-...|+..|+.||+.|+-..+
T Consensus 35 ~~~iCqICGD~Vg~t--~dGe~F-VACn~C----~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r~kg 93 (1094)
T PLN02436 35 SGQTCQICGDEIELT--VDGEPF-VACNEC----AFPVCRPCY-EYERREGNQACPQCKTRYKRIKG 93 (1094)
T ss_pred CCccccccccccCcC--CCCCEE-EeeccC----CCccccchh-hhhhhcCCccCcccCCchhhccC
Confidence 467999999887653 235555 5676 4 55 888999 45556689999999999996654
No 39
>PLN02189 cellulose synthase
Probab=88.40 E-value=0.4 Score=48.69 Aligned_cols=57 Identities=19% Similarity=0.525 Sum_probs=42.6
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccc-cCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCS-CKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~-CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
...+|+||-+..+.+ +.|+++ -.|. | +| |=+.|. ..-...|+..|+.||+.|+-..+
T Consensus 33 ~~~~C~iCgd~vg~~--~~g~~f-vaC~~C----~fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r~kg 91 (1040)
T PLN02189 33 DGQVCEICGDEIGLT--VDGDLF-VACNEC----GFPVCRPCY-EYERREGTQNCPQCKTRYKRLKG 91 (1040)
T ss_pred cCccccccccccCcC--CCCCEE-EeeccC----CCccccchh-hhhhhcCCccCcccCCchhhccC
Confidence 467999999987653 235555 6776 5 55 888999 45555699999999999996654
No 40
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=87.75 E-value=0.68 Score=47.28 Aligned_cols=58 Identities=21% Similarity=0.438 Sum_probs=41.4
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
...+|+||-++..-+ +.|++++ -|. +-+| |=+.|.+- =...|+..|+.||+.|+-.++
T Consensus 16 ~~qiCqICGD~vg~~--~~Ge~FV-AC~---eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr~kg 74 (1079)
T PLN02638 16 GGQVCQICGDNVGKT--VDGEPFV-ACD---VCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKRHKG 74 (1079)
T ss_pred CCceeeecccccCcC--CCCCEEE-Eec---cCCCccccchhhh-hhhcCCccCCccCCchhhhcC
Confidence 467999999887653 2466664 443 2245 78889953 444589999999999996654
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=87.57 E-value=0.31 Score=31.18 Aligned_cols=41 Identities=27% Similarity=0.585 Sum_probs=22.3
Q ss_pred eeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc--CCcccc
Q 030666 54 CRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR--GNMTCE 103 (173)
Q Consensus 54 CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k--~~~~CE 103 (173)
|-||++ ..++ ...|..+||. ..+=++||+++.+.+ +..+|+
T Consensus 1 CpIc~e-~~~~---~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE---ENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT---SS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC---CCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 667887 4332 2458999998 778899999999975 455663
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=0.72 Score=41.73 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=35.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
++...|=||+.+.. +.+++||+ +. .=..|++.-. . ....|+||++.+.-+
T Consensus 288 ~~gkeCVIClse~r-------dt~vLPCR-----HLCLCs~Ca~~Lr-~-q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESR-------DTVVLPCR-----HLCLCSGCAKSLR-Y-QTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCc-------ceEEecch-----hhehhHhHHHHHH-H-hhcCCCccccchHhh
Confidence 55789999998754 57899987 11 3346888765 2 234799999887643
No 43
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=85.47 E-value=1 Score=32.79 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
-...+|.||-+..... +.|++++ -|. ..+| |=+.|.+.=.+. |+..|..|++.|.-..+
T Consensus 7 ~~~qiCqiCGD~VGl~--~~Ge~FV-AC~---eC~fPvCr~CyEYErke-g~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 7 LNGQICQICGDDVGLT--ENGEVFV-ACH---ECAFPVCRPCYEYERKE-GNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp -SS-B-SSS--B--B---SSSSB---S-S---SS-----HHHHHHHHHT-S-SB-TTT--B----TT
T ss_pred cCCcccccccCccccC--CCCCEEE-EEc---ccCCccchhHHHHHhhc-CcccccccCCCcccccC
Confidence 3478999999876543 2455554 443 2234 888999876665 88999999999997766
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=84.13 E-value=0.41 Score=44.49 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=41.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
..-..|.||-+.+. +.-+-||. .+.--.||-.|....+..+|+.|+.+.+-.
T Consensus 367 sTFeLCKICaendK-------dvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 367 STFELCKICAENDK-------DVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred chHHHHHHhhccCC-------Cccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 34578999998764 45667998 677779999999988888999999887653
No 45
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=82.94 E-value=0.68 Score=29.48 Aligned_cols=22 Identities=32% Similarity=0.800 Sum_probs=16.3
Q ss_pred ccCHHHHHHHHHhcCCcccccC
Q 030666 84 YAHKQCAETWFKIRGNMTCEIC 105 (173)
Q Consensus 84 ~vH~~CL~~W~~~k~~~~CEiC 105 (173)
-+|..|++++|+.+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999999988899987
No 46
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.59 E-value=1.6 Score=39.03 Aligned_cols=53 Identities=17% Similarity=0.389 Sum_probs=37.9
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|-||....-... ....++++|. +-+=+.|+.+.+.. +...|++|+...+.
T Consensus 3 ~~~CP~Ck~~~y~np--~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNP--SLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCc--ccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 468999998654311 2235677887 66667999997754 66799999987664
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.34 E-value=0.56 Score=46.78 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=39.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
.....|-||+....+. ...-..+|. .|.|.+|+..|-+.-. +|++|..+|.-+.+
T Consensus 121 ~~~~~CP~Ci~s~~Dq----L~~~~k~c~-----H~FC~~Ci~sWsR~aq--TCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQ----LEESEKHTA-----HYFCEECVGSWSRCAQ--TCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhhHHHHHHHHH----hhccccccc-----cccHHHHhhhhhhhcc--cCchhhhhhheeee
Confidence 3467788887654321 112234666 6999999999998876 99999999987766
No 48
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=1 Score=41.84 Aligned_cols=54 Identities=26% Similarity=0.575 Sum_probs=39.6
Q ss_pred CCCceeEeccCCCCCCCCCCCCee-cccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIE-LGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~-~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
.+.+|-||+++.+... +..+. .-|. ...-.+|+++|+-.+....|+.|+.++..
T Consensus 3 ~g~tcpiclds~~~~g---~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAG---NHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecC---ceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 3678999999987632 23444 3444 66778999999975567899999977543
No 49
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=81.07 E-value=0.57 Score=37.13 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCC---CccCHHHHHHHHHh
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDL---GYAHKQCAETWFKI 96 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl---~~vH~~CL~~W~~~ 96 (173)
...|+||++.... .++.+..+|. |.+ +..|.+|+++|-+.
T Consensus 26 ~~EC~IC~~~I~~----~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDN----NDGVVYVTDG--GTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred Ceeehhhhhhhhc----CCCEEEEecC--CeehHHHHHHHHHHHHHHhh
Confidence 5789999998875 1345656655 444 34999999999544
No 50
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.74 E-value=0.65 Score=33.28 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHH
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAET 92 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~ 92 (173)
+...|.+|...... +.-...||+ ..+|..|+.+
T Consensus 77 ~~~~C~vC~k~l~~-----~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-----SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCC-----ceEEEeCCC-----eEEecccccC
Confidence 46789999998864 345678886 8899999864
No 51
>PLN02400 cellulose synthase
Probab=79.59 E-value=1.8 Score=44.41 Aligned_cols=58 Identities=19% Similarity=0.403 Sum_probs=40.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
...+|+||-+..... +.|++++ -|. ..+| |=+.|.+- =...|+..|+.||+.|+-.++
T Consensus 35 ~gqiCqICGD~VG~t--~dGe~FV-AC~---eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR~Kg 93 (1085)
T PLN02400 35 NGQICQICGDDVGVT--ETGDVFV-ACN---ECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRRHKG 93 (1085)
T ss_pred CCceeeecccccCcC--CCCCEEE-EEc---cCCCccccchhhe-ecccCCccCcccCCccccccC
Confidence 467999999887653 3466664 443 2244 77889853 334489999999999996654
No 52
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.44 E-value=0.76 Score=31.87 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=33.6
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+-.|-|+++-.. +|.+.|+. ...-+.|+++|+.. +..+|++|+....
T Consensus 4 ~f~CpIt~~lM~-------dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 4 EFLCPITGELMR-------DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp GGB-TTTSSB-S-------SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred ccCCcCcCcHhh-------CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 456778877664 58888866 77899999999998 6669999987654
No 53
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=1.3 Score=33.97 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.0
Q ss_pred CccCHHHHHHHHHhcCCcccccCCcee
Q 030666 83 GYAHKQCAETWFKIRGNMTCEICGSTA 109 (173)
Q Consensus 83 ~~vH~~CL~~W~~~k~~~~CEiC~~~y 109 (173)
...|..|+.+|++.+. .|++|..+.
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW 107 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEW 107 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcce
Confidence 6789999999999876 899998774
No 54
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.69 E-value=4.7 Score=33.59 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=35.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
+.-.-|-||++..++ ..+.-.-|+ +.+=.+|++.=++.. .+|++|+.+
T Consensus 129 ~~~~~CPiCl~~~se-----k~~vsTkCG-----HvFC~~Cik~alk~~--~~CP~C~kk 176 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSE-----KVPVSTKCG-----HVFCSQCIKDALKNT--NKCPTCRKK 176 (187)
T ss_pred ccccCCCceecchhh-----ccccccccc-----hhHHHHHHHHHHHhC--CCCCCcccc
Confidence 446889999998764 334557777 666779999877664 499999974
No 55
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.44 E-value=1.2 Score=35.41 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=39.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+++..|.||++.... +.++||. ..+=+.|+..++. ....|+.|+..++
T Consensus 11 ~~~~~C~iC~~~~~~-------p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~~~~ 58 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE-------PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRPPSR 58 (386)
T ss_pred cccccChhhHHHhhc-------Ccccccc-----chHhHHHHHHhcC--CCcCCcccCCchh
Confidence 458899999998763 4788998 7777899999999 7789999995333
No 56
>PLN02195 cellulose synthase A
Probab=76.26 E-value=3.1 Score=42.33 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=39.2
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
....+|+||-+..+.+. .|++++ -|. +-+| |=+.|.+ .=+..|+..|+.||+.|+
T Consensus 4 ~~~~~c~~cgd~~~~~~--~g~~fv-aC~---eC~~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDS--NGEAFV-ACH---ECSYPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCC--CCCeEE-Eec---cCCCccccchhh-hhhhcCCccCCccCCccc
Confidence 34679999998776542 466664 443 2244 8889994 444458999999999999
No 57
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.40 E-value=9.2 Score=36.38 Aligned_cols=55 Identities=22% Similarity=0.470 Sum_probs=39.5
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh---cCCcccccCCceecc--cccccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI---RGNMTCEICGSTADN--IAGEQT 117 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~---k~~~~CEiC~~~y~~--v~~~~~ 117 (173)
...|-||+++... +..+-|+ +..=-.||.+.+.. ++-..|+||..++.. +....|
T Consensus 186 ~~~CPICL~~~~~-------p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-------PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCc-------ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 6789999998653 3444476 55566888888765 467899999998776 544333
No 58
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.90 E-value=4.2 Score=36.78 Aligned_cols=61 Identities=18% Similarity=0.426 Sum_probs=42.2
Q ss_pred CCCCceeEeccCCCCCC-CCCCCCeecccccCCCCCccCHHHHHHHHHhcC-----CcccccCCceeccccc
Q 030666 49 KAERDCRICHLGLEGNS-QELMPPIELGCSCKGDLGYAHKQCAETWFKIRG-----NMTCEICGSTADNIAG 114 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~-~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~-----~~~CEiC~~~y~~v~~ 114 (173)
..+..|=||++...+-. .+....+..+|. ...=..|+.+|-..+. ++.|++|+..-..+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 45889999999876422 011123335576 4445689999998776 7999999988776655
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=68.37 E-value=2.2 Score=41.12 Aligned_cols=52 Identities=27% Similarity=0.571 Sum_probs=40.5
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh---cCCcccccCCceec
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI---RGNMTCEICGSTAD 110 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~---k~~~~CEiC~~~y~ 110 (173)
+|+++..|-+|+++.+ +.+++-|. .-.-+-|+..++.. ..+.+|+.|.-...
T Consensus 532 enk~~~~C~lc~d~ae-------d~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAE-------DYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhh-------hhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 5678999999999864 57888887 55567899888764 44799999986644
No 60
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=65.13 E-value=3.1 Score=37.40 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=39.0
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
.--.||||+.-.. -+.+++|+ .-+-.-|+++.+.... -|++|.+.++..
T Consensus 24 s~lrC~IC~~~i~-------ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRIS-------IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheee-------cceecccc-----cchhHHHHHHHhcCCC--CCccccccHHhh
Confidence 3568999998875 47889998 5555678888888766 899999998765
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.58 E-value=6.8 Score=36.14 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=35.8
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh-cCCcccccCCceeccc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI-RGNMTCEICGSTADNI 112 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~-k~~~~CEiC~~~y~~v 112 (173)
+.++..|-||+.+.- +....||+ |+.|-.==-++ -.++.|-.||++...+
T Consensus 419 ~sEd~lCpICyA~pi-------~Avf~PC~--------H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPI-------NAVFAPCS--------HRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred CcccccCcceecccc-------hhhccCCC--------CchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 357889999998753 57889998 66554333232 2467999999998843
No 62
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=63.24 E-value=6.4 Score=36.17 Aligned_cols=56 Identities=27% Similarity=0.580 Sum_probs=40.0
Q ss_pred cCCCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC--CcccccCCceecc
Q 030666 45 HLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG--NMTCEICGSTADN 111 (173)
Q Consensus 45 ~~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~--~~~CEiC~~~y~~ 111 (173)
|...+++..|-.|.++.+- .+.-..||.| +| +-|---|-.++. |-+|+.|+..|..
T Consensus 8 ~~sedeed~cplcie~mdi-----tdknf~pc~c----gy--~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 8 HNSEDEEDYCPLCIEPMDI-----TDKNFFPCPC----GY--QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccccccCccccccccc-----ccCCcccCCc----cc--HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3344567889999999875 2344568888 33 567777877765 6799999987753
No 63
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=60.83 E-value=9.5 Score=41.36 Aligned_cols=55 Identities=31% Similarity=0.595 Sum_probs=42.1
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC--------CcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG--------NMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~--------~~~CEiC~~~y~~v 112 (173)
+...+|-||+.+.-. ....+.+.|+ ...|.+|.++=+..+. -..|+||+.+..-+
T Consensus 3484 D~DDmCmICFTE~L~----AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALS----AAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhC----CCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 346899999976543 2356788888 9999999988776653 37999999887654
No 64
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=59.68 E-value=5.3 Score=39.10 Aligned_cols=59 Identities=31% Similarity=0.510 Sum_probs=40.0
Q ss_pred ecCCCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc----C-----CcccccCC
Q 030666 44 LHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR----G-----NMTCEICG 106 (173)
Q Consensus 44 ~~~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k----~-----~~~CEiC~ 106 (173)
++..++.-..|..|......... .....+-|++.| ++-|..|+..|+... | -+.||-|+
T Consensus 8 ~s~~~~~~~~~~mc~l~~s~G~~--~ag~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 8 VSSSDKAIIVCLMCPLCGSSGKG--RAGRLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred Eeccchhhhhhhhhhhhcccccc--ccCcchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 44445555566666655543321 223456799888 999999999999875 2 47888888
No 65
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=58.31 E-value=8.9 Score=39.41 Aligned_cols=58 Identities=26% Similarity=0.559 Sum_probs=40.9
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
...+|.||-+....+ ..|++++ -|. +-+| |=+.|.+ .=...|+..|+.||+.|+-..+
T Consensus 14 ~~~~c~iCGd~vg~~--~~Ge~FV-AC~---eC~fpvCr~cye-ye~~~g~~~cp~c~t~y~~~~~ 72 (1044)
T PLN02915 14 DAKTCRVCGDEVGVK--EDGQPFV-ACH---VCGFPVCKPCYE-YERSEGNQCCPQCNTRYKRHKG 72 (1044)
T ss_pred CcchhhccccccCcC--CCCCEEE-Eec---cCCCccccchhh-hhhhcCCccCCccCCchhhhcC
Confidence 478999999887653 2466664 443 2244 7788994 4444589999999999996553
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.32 E-value=13 Score=34.23 Aligned_cols=52 Identities=19% Similarity=0.485 Sum_probs=36.1
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHH---HHHHHHHhcCCcccccCCceecccc
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQ---CAETWFKIRGNMTCEICGSTADNIA 113 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~---CL~~W~~~k~~~~CEiC~~~y~~v~ 113 (173)
.|+++..|-||-.+.+- .-.+||. |+- |+-+--..-..+.|.+|+++-..|.
T Consensus 57 tDEen~~C~ICA~~~TY-------s~~~PC~--------H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 57 TDEENMNCQICAGSTTY-------SARYPCG--------HQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccceeEEecCCceE-------EEeccCC--------chHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34678999999988752 4568998 554 4544444445678999999866553
No 67
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=55.74 E-value=27 Score=35.44 Aligned_cols=57 Identities=23% Similarity=0.549 Sum_probs=43.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcC-----CcccccCCceeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRG-----NMTCEICGSTADNIAG 114 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~-----~~~CEiC~~~y~~v~~ 114 (173)
....|-||.+..... ...| +|+-=...+|..|+++|-+... .+.|+-|++.+..++.
T Consensus 190 ~~yeCmIC~e~I~~t----~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~ 251 (950)
T KOG1952|consen 190 RKYECMICTERIKRT----APVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPK 251 (950)
T ss_pred CceEEEEeeeecccc----CCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCc
Confidence 467899999988752 2334 4556668899999999987632 5899999988776655
No 68
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=55.11 E-value=17 Score=29.70 Aligned_cols=38 Identities=29% Similarity=0.627 Sum_probs=27.1
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccc----------cCCCCCccCHHHHHHHHHhc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCS----------CKGDLGYAHKQCAETWFKIR 97 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~----------CkGsl~~vH~~CL~~W~~~k 97 (173)
+..|-||++-.- |...+-|+ |. ..|-|..||++.-+..
T Consensus 2 d~~CpICme~PH-------NAVLLlCSS~~kgcRpymc~--Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPH-------NAVLLLCSSHEKGCRPYMCD--TSYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCC-------ceEEEEeccccCCccccccC--CccchhHHHHHHHHHh
Confidence 568999998743 44444442 44 3788999999998764
No 69
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=54.09 E-value=8 Score=30.86 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=43.4
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
.--.|-||++...+ +.+.-|=.|=| .+.---=|+.-|=-.+-.-.|++|++.|+..
T Consensus 79 ~lYeCnIC~etS~e------e~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAE------ERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccch------hhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 56789999998763 46777777766 4445556788888777888999999999865
No 70
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=53.91 E-value=4.8 Score=37.53 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=41.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
.+-.|-.|-+....- +++.--+||+ ...|..||...+...+.++|+-|++-
T Consensus 364 ~~L~Cg~CGe~~Glk---~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLK---NERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCC---cccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 467899998776542 2334458999 99999999999999999999999944
No 71
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=53.38 E-value=8 Score=34.90 Aligned_cols=52 Identities=19% Similarity=0.460 Sum_probs=38.4
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc---------------------CCcccccCCcee
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR---------------------GNMTCEICGSTA 109 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k---------------------~~~~CEiC~~~y 109 (173)
.-.|-||+-+..+ +..-.+++|- .|.|-.||.+.+..- -...|+||....
T Consensus 115 ~gqCvICLygfa~----~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 115 NGQCVICLYGFAS----SPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred CCceEEEEEeecC----CCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 3578888877653 2346789998 999999999988641 136799999875
Q ss_pred cc
Q 030666 110 DN 111 (173)
Q Consensus 110 ~~ 111 (173)
..
T Consensus 186 ~~ 187 (368)
T KOG4445|consen 186 KI 187 (368)
T ss_pred cc
Confidence 43
No 72
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=52.91 E-value=5.1 Score=36.72 Aligned_cols=47 Identities=21% Similarity=0.452 Sum_probs=37.9
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
--.|-||++-.. -+++.||+ .-.-.-|+++.+..+. .|+.|-.+++-
T Consensus 23 lLRC~IC~eyf~-------ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFN-------IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhc-------Cceecccc-----chHHHHHHHHHhccCC--CCCceecccch
Confidence 567999998764 48999998 4555678999998876 89999988763
No 73
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=52.01 E-value=7.5 Score=19.92 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=8.3
Q ss_pred ccccCCceeccc
Q 030666 101 TCEICGSTADNI 112 (173)
Q Consensus 101 ~CEiC~~~y~~v 112 (173)
.|++|+..|.+.
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 699999998864
No 74
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=48.01 E-value=21 Score=32.50 Aligned_cols=36 Identities=22% Similarity=0.588 Sum_probs=26.6
Q ss_pred cccccCCCCCccCHHHHHHHHHhcC-----------CcccccCCceeccc
Q 030666 74 LGCSCKGDLGYAHKQCAETWFKIRG-----------NMTCEICGSTADNI 112 (173)
Q Consensus 74 ~pC~CkGsl~~vH~~CL~~W~~~k~-----------~~~CEiC~~~y~~v 112 (173)
.+|.|+- .==.+|+-+||-.++ +..|+.|+++|-.+
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4677764 123589999998865 57999999998643
No 75
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=45.90 E-value=13 Score=32.77 Aligned_cols=49 Identities=31% Similarity=0.525 Sum_probs=37.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~ 107 (173)
..+..|-||.+..... ...+-.++|+ .+.|..|++.-.... .+|++|+.
T Consensus 156 ~~~~ncPic~e~l~~s---~~~~~~~~Cg-----H~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLS---FEDAGVLKCG-----HYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred cccCCCchhHHHhccc---cccCCccCcc-----cchHHHHHHHHhccC--CCCCcccc
Confidence 3455699999887653 2456778999 999988888777664 89999999
No 76
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=45.11 E-value=11 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.883 Sum_probs=10.0
Q ss_pred ccccCCceeccc
Q 030666 101 TCEICGSTADNI 112 (173)
Q Consensus 101 ~CEiC~~~y~~v 112 (173)
.|++|+..|...
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 699999998753
No 77
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=15 Score=30.59 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=18.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCeeccccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSC 78 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~C 78 (173)
..-.|-||++.++.. ...-.+||-|
T Consensus 176 dkGECvICLEdL~~G----dtIARLPCLC 200 (205)
T KOG0801|consen 176 DKGECVICLEDLEAG----DTIARLPCLC 200 (205)
T ss_pred cCCcEEEEhhhccCC----CceeccceEE
Confidence 356899999998752 3355799998
No 78
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=13 Score=34.97 Aligned_cols=44 Identities=23% Similarity=0.653 Sum_probs=33.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+.+..|+||+... . .-+.+|. |..|+.+|...+. .|+.|+....
T Consensus 477 ~~~~~~~~~~~~~-~-------~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S-------ARITPCS--------HALCLRKWLYVQE--VCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-H-------hcccccc--------chhHHHhhhhhcc--ccCCCchhhh
Confidence 4478999999876 2 1234555 9999999999877 8999987654
No 79
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=32.27 E-value=23 Score=18.89 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=10.0
Q ss_pred ccccCCceeccc
Q 030666 101 TCEICGSTADNI 112 (173)
Q Consensus 101 ~CEiC~~~y~~v 112 (173)
.|++|+..|.+.
T Consensus 2 ~C~~C~~~f~s~ 13 (25)
T PF12874_consen 2 YCDICNKSFSSE 13 (25)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCCcCCH
Confidence 699999998754
No 80
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.74 E-value=58 Score=21.51 Aligned_cols=23 Identities=13% Similarity=0.469 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHhhhcc
Q 030666 147 RRIMNFLLACMVFAFVISWLFHF 169 (173)
Q Consensus 147 ~~~lnfLla~mV~afvlpW~f~~ 169 (173)
.|+-..+++++++++++.|++.+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~ 40 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSL 40 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888888888887653
No 81
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.67 E-value=31 Score=31.86 Aligned_cols=50 Identities=20% Similarity=0.582 Sum_probs=36.4
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
..+-.|-||..... .+..+||. .-.=..|+++ ....+..|++|+..+.-.
T Consensus 82 ~sef~c~vc~~~l~-------~pv~tpcg-----hs~c~~Cl~r--~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-------PPVVTPCG-----HSFCLECLDR--SLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcC-------CCcccccc-----ccccHHHHHH--HhccCCCCcccccccccc
Confidence 34678999987664 57888997 4444557777 344678999999998743
No 82
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=31.62 E-value=21 Score=19.44 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=11.3
Q ss_pred cccccCCceecccc
Q 030666 100 MTCEICGSTADNIA 113 (173)
Q Consensus 100 ~~CEiC~~~y~~v~ 113 (173)
..|++|+..|.+..
T Consensus 2 ~~C~~C~~~F~~~~ 15 (27)
T PF13912_consen 2 FECDECGKTFSSLS 15 (27)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCccCCccCChh
Confidence 37999999998653
No 83
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=33 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.3
Q ss_pred cCHHHHHHHHHhc-----------CCcccccCCceeccccc
Q 030666 85 AHKQCAETWFKIR-----------GNMTCEICGSTADNIAG 114 (173)
Q Consensus 85 vH~~CL~~W~~~k-----------~~~~CEiC~~~y~~v~~ 114 (173)
--++||.+||..+ |+-+|+.|++.|-..-+
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 3479999999764 46899999998876533
No 84
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.83 E-value=43 Score=29.50 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=35.4
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHH-HHHhcCCcccccCCcee
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAET-WFKIRGNMTCEICGSTA 109 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~-W~~~k~~~~CEiC~~~y 109 (173)
.+-|-||++..+ .+.-+||. +..=-.||.. |-+.| ...|++|+...
T Consensus 215 d~kC~lC~e~~~-------~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEPE-------VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKV 261 (271)
T ss_pred ccceeeeecccC-------Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhc
Confidence 578999999865 57889998 6666788888 76654 34699999763
No 85
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.35 E-value=23 Score=20.23 Aligned_cols=12 Identities=25% Similarity=0.598 Sum_probs=9.6
Q ss_pred CcccccCCceec
Q 030666 99 NMTCEICGSTAD 110 (173)
Q Consensus 99 ~~~CEiC~~~y~ 110 (173)
.+.|+.||+.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 468999998874
No 86
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=30.30 E-value=25 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=11.4
Q ss_pred CCcccccCCceecc
Q 030666 98 GNMTCEICGSTADN 111 (173)
Q Consensus 98 ~~~~CEiC~~~y~~ 111 (173)
++..|++|+..|..
T Consensus 2 ~~~~C~~C~~~~~~ 15 (35)
T smart00451 2 GGFYCKLCNVTFTD 15 (35)
T ss_pred cCeEccccCCccCC
Confidence 46789999998873
No 87
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=29.46 E-value=28 Score=19.31 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=10.6
Q ss_pred CcccccCCceecc
Q 030666 99 NMTCEICGSTADN 111 (173)
Q Consensus 99 ~~~CEiC~~~y~~ 111 (173)
...|++|+..|.+
T Consensus 14 ~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 14 PYKCPYCGKSFSN 26 (26)
T ss_dssp SEEESSSSEEESS
T ss_pred CCCCCCCcCeeCc
Confidence 5799999998863
No 88
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=29.42 E-value=24 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=17.3
Q ss_pred CccCHHHHHHHHHhcCCcccccCCceec
Q 030666 83 GYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 83 ~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.|.=..||..-+..+ ..|+||+++..
T Consensus 21 HYLCl~CLt~ml~~s--~~C~iC~~~LP 46 (50)
T PF03854_consen 21 HYLCLNCLTLMLSRS--DRCPICGKPLP 46 (50)
T ss_dssp -EEEHHHHHHT-SSS--SEETTTTEE--
T ss_pred hhHHHHHHHHHhccc--cCCCcccCcCc
Confidence 677778887766554 49999998865
No 89
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=28.85 E-value=30 Score=25.21 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcC-------CcccccCCceec
Q 030666 87 KQCAETWFKIRG-------NMTCEICGSTAD 110 (173)
Q Consensus 87 ~~CL~~W~~~k~-------~~~CEiC~~~y~ 110 (173)
.+++++||+.+| ...|..|+.+-.
T Consensus 33 ~~yaK~yL~sig~~~~~vt~~eC~FCHse~A 63 (81)
T PF09630_consen 33 IEYAKEYLKSIGEEDADVTQKECRFCHSEEA 63 (81)
T ss_dssp HHHHHHHHHHHT---S---TTTEEEEEEEE-
T ss_pred HHHHHHHHHhcCCCCCccccccCcccccccC
Confidence 368999999987 489999998743
No 90
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.66 E-value=61 Score=28.36 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=41.1
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc------CCcccccCCce
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR------GNMTCEICGST 108 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k------~~~~CEiC~~~ 108 (173)
|.+-...||.|..+..+ ++...+-|- ...|-.||..|-..- ....|+-|..+
T Consensus 46 DsDY~pNC~LC~t~La~-----gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLAS-----GDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred hcCCCCCCceeCCcccc-----Ccceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 33457889999998874 677888886 899999999998642 24789999876
No 91
>PF15353 HECA: Headcase protein family homologue
Probab=27.91 E-value=33 Score=26.25 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=11.8
Q ss_pred CccCHHHHHHHHH
Q 030666 83 GYAHKQCAETWFK 95 (173)
Q Consensus 83 ~~vH~~CL~~W~~ 95 (173)
.|+|++|.++|=.
T Consensus 42 ~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 42 QYMHRECFEKWED 54 (107)
T ss_pred CchHHHHHHHHHH
Confidence 8999999999954
No 92
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.87 E-value=86 Score=27.82 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=24.0
Q ss_pred ecCCCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh
Q 030666 44 LHLGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI 96 (173)
Q Consensus 44 ~~~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~ 96 (173)
+.-+.+.-..|.||++-.-++.. ...|..-=+= -=|++|.++|-.+
T Consensus 23 l~Td~~tLsfChiCfEl~iegvp--ks~llHtkSl-----RGHrdCFEK~HlI 68 (285)
T PF06937_consen 23 LGTDTETLSFCHICFELSIEGVP--KSNLLHTKSL-----RGHRDCFEKYHLI 68 (285)
T ss_pred ecccccceeecceeeccccccCc--cccccccccc-----cchHHHHHHHHHH
Confidence 33344455677777754433211 1112211111 2499999999876
No 93
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=22 Score=24.48 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=30.0
Q ss_pred CceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 52 RDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
..|.||++..-+ ....-|. --..-.+|..+-.+. +.-.|+||+.+.+.+
T Consensus 8 dECTICye~pvd-------sVlYtCG----HMCmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVD-------SVLYTCG----HMCMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcch-------HHHHHcc----hHHhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 679999987542 3444443 001224676554443 445999999887755
No 95
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=26.72 E-value=37 Score=21.21 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.5
Q ss_pred CCcccccCCceeccc
Q 030666 98 GNMTCEICGSTADNI 112 (173)
Q Consensus 98 ~~~~CEiC~~~y~~v 112 (173)
+.++|..|+-.|..-
T Consensus 12 ~~~~C~~CgM~Y~~~ 26 (41)
T PF13878_consen 12 GATTCPTCGMLYSPG 26 (41)
T ss_pred CCcCCCCCCCEECCC
Confidence 468999999999854
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=26.67 E-value=29 Score=23.58 Aligned_cols=44 Identities=25% Similarity=0.535 Sum_probs=29.7
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+..|-.|..... ...++||. |.-|...|=..+ -.-|++|++++.
T Consensus 7 ~~~~~~~~~~~~-------~~~~~pCg--------H~I~~~~f~~~r-YngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGT-------KGTVLPCG--------HLICDNCFPGER-YNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEcccccc-------cccccccc--------ceeeccccChhh-ccCCCCCCCccc
Confidence 456777765543 46778998 666666664443 348999999875
No 97
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=25.08 E-value=66 Score=23.66 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=16.5
Q ss_pred ceeeec--chhHHHHHHHHHHHHHH
Q 030666 141 QNLWHG--RRIMNFLLACMVFAFVI 163 (173)
Q Consensus 141 ~~~w~~--~~~lnfLla~mV~afvl 163 (173)
..+|-. .||+.++++++++++++
T Consensus 65 ~~VWVTpgiPFlvpIt~G~iial~~ 89 (93)
T PF06847_consen 65 ETVWVTPGIPFLVPITAGYIIALIY 89 (93)
T ss_dssp -EEEE-----THHHHHHHHHHHHHH
T ss_pred CcEEEeCCCcCHHHHHHHHHHHHHh
Confidence 457764 89999999999999875
No 98
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=22.15 E-value=45 Score=20.39 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=11.7
Q ss_pred cccccCCceecccc
Q 030666 100 MTCEICGSTADNIA 113 (173)
Q Consensus 100 ~~CEiC~~~y~~v~ 113 (173)
.+|+.||..|....
T Consensus 2 r~C~~Cg~~Yh~~~ 15 (36)
T PF05191_consen 2 RICPKCGRIYHIEF 15 (36)
T ss_dssp EEETTTTEEEETTT
T ss_pred cCcCCCCCcccccc
Confidence 47999999999753
No 99
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=21.83 E-value=49 Score=18.44 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=9.2
Q ss_pred cccccCCceec
Q 030666 100 MTCEICGSTAD 110 (173)
Q Consensus 100 ~~CEiC~~~y~ 110 (173)
..|++|+..|.
T Consensus 3 ~~C~~CgR~F~ 13 (25)
T PF13913_consen 3 VPCPICGRKFN 13 (25)
T ss_pred CcCCCCCCEEC
Confidence 47999999985
No 100
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=45 Score=33.90 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=36.3
Q ss_pred CceeEeccCCCCCCCCCCCCee-cccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 52 RDCRICHLGLEGNSQELMPPIE-LGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~-~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
..|-+|....+- |.+ --|. +..||.|++ .+...|+-|..+++++..
T Consensus 841 skCs~C~~~Ldl-------P~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 841 SKCSACEGTLDL-------PFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeecccCCcccc-------ceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhhHH
Confidence 589999988763 443 3465 889999999 677899999998888754
No 101
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.22 E-value=15 Score=29.14 Aligned_cols=35 Identities=31% Similarity=0.667 Sum_probs=28.0
Q ss_pred CCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCc
Q 030666 70 PPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGS 107 (173)
Q Consensus 70 ~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~ 107 (173)
..+-++|+|. -|+|-+|....|.++|...|---.+
T Consensus 31 RRIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~E 65 (134)
T PF01440_consen 31 RRIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSRE 65 (134)
T ss_pred CccccCCCCE---EEeecccCCCCcCCCcCccCCCcCc
Confidence 3566899995 5899999999999999877765443
No 102
>PF03779 SPW: SPW repeat; InterPro: IPR005530 A short repeat found in a small family of membrane-bound proteins. This repeat contains a conserved SPW motif in the first of two transmembrane helices [].
Probab=20.91 E-value=1.1e+02 Score=20.11 Aligned_cols=20 Identities=30% Similarity=0.770 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccc
Q 030666 149 IMNFLLACMVFAFVISWLFHFK 170 (173)
Q Consensus 149 ~lnfLla~mV~afvlpW~f~~~ 170 (173)
++|.++. +|.++-||.++|.
T Consensus 3 w~~~llG--lwli~SPWvlgf~ 22 (51)
T PF03779_consen 3 WLNLLLG--LWLIVSPWVLGFS 22 (51)
T ss_pred HHHHHHH--HHHHHhHHHcccC
Confidence 3444443 4777789999884
No 103
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=20.62 E-value=71 Score=20.63 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCeecccccCCCCCccCHHH--HHHHHHh---cCCcccccCCc
Q 030666 70 PPIELGCSCKGDLGYAHKQC--AETWFKI---RGNMTCEICGS 107 (173)
Q Consensus 70 ~~l~~pC~CkGsl~~vH~~C--L~~W~~~---k~~~~CEiC~~ 107 (173)
..+..|.+ +..-.|.+| |+.|++. ++...|++|++
T Consensus 10 ~~i~~P~R---g~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 10 QRIRIPVR---GKNCKHLQCFDLESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-SSEEE---ETT--SS--EEHHHHHHHHHHS---B-TTT--
T ss_pred CEEEeCcc---CCcCcccceECHHHHHHHhhccCCeECcCCcC
Confidence 35666765 245578888 5567764 45689999986
No 104
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=72 Score=28.23 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=36.5
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.-+|-+|++.++... .-....||. ..|-.+|+++.+.. ...|++|+.+..
T Consensus 221 ryiCpvtrd~LtNt~---~ca~Lr~sg-----~Vv~~ecvEklir~--D~v~pv~d~plk 270 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTT---PCAVLRPSG-----HVVTKECVEKLIRK--DMVDPVTDKPLK 270 (303)
T ss_pred ceecccchhhhcCcc---ceEEeccCC-----cEeeHHHHHHhccc--cccccCCCCcCc
Confidence 468999999887421 123445665 77899999998765 459999998754
Done!