Query 030666
Match_columns 173
No_of_seqs 198 out of 728
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 7.5E-21 2.5E-25 128.7 3.5 57 48-111 3-59 (60)
2 2d8s_A Cellular modulator of i 99.7 7.6E-18 2.6E-22 119.7 4.5 60 48-112 12-71 (80)
3 2kiz_A E3 ubiquitin-protein li 98.3 6E-07 2.1E-11 59.7 3.7 53 49-112 12-64 (69)
4 2ecm_A Ring finger and CHY zin 98.3 4.4E-07 1.5E-11 57.6 2.7 52 49-110 3-54 (55)
5 2ep4_A Ring finger protein 24; 98.2 6.3E-07 2.1E-11 60.4 3.5 53 49-112 13-65 (74)
6 1v87_A Deltex protein 2; ring- 98.2 1.2E-06 4.1E-11 63.6 4.9 61 50-115 24-98 (114)
7 1iym_A EL5; ring-H2 finger, ub 98.2 4.6E-07 1.6E-11 57.6 2.2 51 49-110 3-54 (55)
8 1x4j_A Ring finger protein 38; 98.2 7.3E-07 2.5E-11 60.4 2.7 52 49-111 21-72 (75)
9 2ecl_A Ring-box protein 2; RNF 98.1 1.3E-06 4.4E-11 60.7 2.8 55 50-111 14-76 (81)
10 2ect_A Ring finger protein 126 98.0 1.2E-06 4E-11 59.6 1.5 52 49-111 13-64 (78)
11 2l0b_A E3 ubiquitin-protein li 98.0 1.3E-06 4.6E-11 61.7 1.6 51 49-110 38-88 (91)
12 2yur_A Retinoblastoma-binding 98.0 3.2E-06 1.1E-10 57.4 2.7 49 50-110 14-63 (74)
13 2ea6_A Ring finger protein 4; 97.9 2.3E-06 7.9E-11 56.2 1.5 55 49-110 13-67 (69)
14 3dpl_R Ring-box protein 1; ubi 97.9 6.8E-06 2.3E-10 60.6 3.5 54 50-110 36-100 (106)
15 1chc_A Equine herpes virus-1 r 97.9 6.9E-06 2.4E-10 54.2 3.1 51 49-112 3-53 (68)
16 2ysl_A Tripartite motif-contai 97.9 4.8E-06 1.6E-10 55.6 2.2 50 49-110 18-68 (73)
17 2ct2_A Tripartite motif protei 97.9 8.2E-06 2.8E-10 56.1 3.3 56 49-112 13-69 (88)
18 2ecw_A Tripartite motif-contai 97.9 1.7E-05 5.9E-10 53.7 4.7 49 50-110 18-70 (85)
19 3ng2_A RNF4, snurf, ring finge 97.9 2.9E-06 9.8E-11 56.3 0.7 55 49-110 8-62 (71)
20 2ecy_A TNF receptor-associated 97.8 6.2E-06 2.1E-10 54.4 2.2 49 49-110 13-61 (66)
21 2ysj_A Tripartite motif-contai 97.8 1.7E-05 5.9E-10 51.7 3.9 45 49-105 18-63 (63)
22 2ecv_A Tripartite motif-contai 97.8 1.9E-05 6.6E-10 53.5 4.3 51 49-111 17-71 (85)
23 2xeu_A Ring finger protein 4; 97.8 2.9E-06 1E-10 54.9 -0.1 54 50-110 2-55 (64)
24 2d8t_A Dactylidin, ring finger 97.8 5.6E-06 1.9E-10 55.5 0.9 48 50-111 14-61 (71)
25 2csy_A Zinc finger protein 183 97.7 2E-05 7E-10 53.9 3.4 48 49-110 13-60 (81)
26 2ecj_A Tripartite motif-contai 97.7 2.1E-05 7.1E-10 50.0 3.1 45 49-105 13-58 (58)
27 3ztg_A E3 ubiquitin-protein li 97.7 2.1E-05 7.2E-10 54.8 3.0 50 49-110 11-61 (92)
28 2djb_A Polycomb group ring fin 97.6 2.8E-05 9.4E-10 52.2 3.0 48 50-111 14-62 (72)
29 2ecn_A Ring finger protein 141 97.6 7.4E-06 2.5E-10 54.4 0.2 48 49-111 13-60 (70)
30 2ct0_A Non-SMC element 1 homol 97.6 3.8E-05 1.3E-09 53.6 3.1 51 50-111 14-64 (74)
31 1t1h_A Gspef-atpub14, armadill 97.6 3.7E-05 1.3E-09 52.0 2.8 49 49-110 6-54 (78)
32 2egp_A Tripartite motif-contai 97.5 1.3E-05 4.3E-10 54.2 -0.3 51 49-111 10-65 (79)
33 4a0k_B E3 ubiquitin-protein li 97.4 2.5E-05 8.7E-10 58.8 0.6 55 50-111 47-112 (117)
34 1e4u_A Transcriptional repress 97.4 0.00011 3.6E-09 51.2 3.4 56 49-113 9-64 (78)
35 1jm7_A BRCA1, breast cancer ty 97.4 0.0001 3.4E-09 52.8 3.0 49 51-111 21-70 (112)
36 1g25_A CDK-activating kinase a 97.3 6E-05 2.1E-09 49.4 1.4 52 50-110 2-54 (65)
37 3lrq_A E3 ubiquitin-protein li 97.3 8E-05 2.7E-09 53.3 2.2 48 50-110 21-69 (100)
38 3fl2_A E3 ubiquitin-protein li 97.3 9E-05 3.1E-09 54.6 2.2 48 51-111 52-99 (124)
39 4ayc_A E3 ubiquitin-protein li 97.3 6.4E-05 2.2E-09 56.6 1.2 47 51-111 53-99 (138)
40 2ckl_B Ubiquitin ligase protei 97.2 0.00012 4E-09 56.5 2.1 47 51-110 54-101 (165)
41 2y43_A E3 ubiquitin-protein li 97.2 0.00014 4.8E-09 51.4 1.9 47 51-111 22-69 (99)
42 4ap4_A E3 ubiquitin ligase RNF 97.0 7.5E-05 2.5E-09 54.3 -0.5 57 49-112 5-61 (133)
43 3hct_A TNF receptor-associated 97.0 0.00026 9E-09 51.8 2.4 50 49-111 16-65 (118)
44 2ckl_A Polycomb group ring fin 97.0 0.00016 5.4E-09 52.0 1.1 49 50-112 14-63 (108)
45 1z6u_A NP95-like ring finger p 97.0 0.00029 9.8E-09 54.3 2.2 49 51-112 78-126 (150)
46 4ap4_A E3 ubiquitin ligase RNF 96.9 0.00012 4E-09 53.3 -0.3 56 48-110 69-124 (133)
47 1rmd_A RAG1; V(D)J recombinati 96.8 0.00051 1.7E-08 49.8 2.2 48 51-111 23-70 (116)
48 3l11_A E3 ubiquitin-protein li 96.7 0.00018 6.2E-09 52.2 -0.6 48 51-111 15-62 (115)
49 2y1n_A E3 ubiquitin-protein li 96.6 0.0013 4.3E-08 58.7 3.6 50 50-112 331-380 (389)
50 4ic3_A E3 ubiquitin-protein li 96.3 0.00072 2.5E-08 45.8 0.1 44 51-112 24-68 (74)
51 1jm7_B BARD1, BRCA1-associated 96.2 0.00095 3.3E-08 48.7 0.6 45 50-110 21-66 (117)
52 3hcs_A TNF receptor-associated 96.1 0.0029 9.9E-08 48.7 2.7 50 49-111 16-65 (170)
53 2vje_A E3 ubiquitin-protein li 96.1 0.002 6.7E-08 42.7 1.5 50 49-112 6-58 (64)
54 3knv_A TNF receptor-associated 96.0 0.00088 3E-08 51.1 -0.7 48 49-109 29-76 (141)
55 1bor_A Transcription factor PM 95.9 0.0019 6.5E-08 41.4 0.8 46 49-111 4-49 (56)
56 3k1l_B Fancl; UBC, ring, RWD, 95.8 0.006 2.1E-07 54.1 3.6 58 49-110 306-372 (381)
57 2vje_B MDM4 protein; proto-onc 95.6 0.0037 1.3E-07 41.2 1.4 49 50-112 6-57 (63)
58 2ea5_A Cell growth regulator w 95.6 0.0097 3.3E-07 39.9 3.5 47 48-112 12-59 (68)
59 2kr4_A Ubiquitin conjugation f 95.5 0.0076 2.6E-07 41.9 2.7 48 49-110 12-59 (85)
60 2c2l_A CHIP, carboxy terminus 95.4 0.0069 2.4E-07 48.9 2.6 49 49-110 206-254 (281)
61 2kre_A Ubiquitin conjugation f 95.3 0.0057 1.9E-07 44.1 1.6 49 49-111 27-75 (100)
62 3nw0_A Non-structural maintena 95.3 0.012 4.1E-07 48.7 3.7 51 50-112 179-230 (238)
63 2ecg_A Baculoviral IAP repeat- 95.0 0.011 3.9E-07 39.7 2.3 44 51-112 25-69 (75)
64 2f42_A STIP1 homology and U-bo 94.4 0.015 5.1E-07 46.5 1.9 50 49-111 104-153 (179)
65 2yu4_A E3 SUMO-protein ligase 94.4 0.024 8.2E-07 39.9 2.8 48 49-108 5-59 (94)
66 1wgm_A Ubiquitin conjugation f 94.1 0.02 6.8E-07 41.0 1.9 50 49-111 20-69 (98)
67 3t6p_A Baculoviral IAP repeat- 92.8 0.018 6E-07 50.2 -0.3 45 50-112 294-339 (345)
68 1wim_A KIAA0161 protein; ring 92.8 0.043 1.5E-06 38.2 1.8 50 50-109 4-62 (94)
69 2yho_A E3 ubiquitin-protein li 90.9 0.056 1.9E-06 37.0 0.6 44 51-112 18-62 (79)
70 1weo_A Cellulose synthase, cat 90.5 0.51 1.7E-05 34.1 5.4 59 49-114 14-73 (93)
71 3htk_C E3 SUMO-protein ligase 87.6 0.19 6.4E-06 42.7 1.5 49 50-110 180-231 (267)
72 2bay_A PRE-mRNA splicing facto 87.0 0.23 7.9E-06 32.5 1.4 45 52-110 4-49 (61)
73 2lri_C Autoimmune regulator; Z 81.4 0.44 1.5E-05 32.0 0.8 47 51-109 12-60 (66)
74 1weu_A Inhibitor of growth fam 78.7 1.3 4.5E-05 31.6 2.7 50 47-108 32-85 (91)
75 1xrd_A LH-1, light-harvesting 63.4 2.5 8.6E-05 27.5 1.1 33 141-173 2-34 (52)
76 2ku3_A Bromodomain-containing 63.1 1.3 4.6E-05 29.9 -0.3 55 47-108 12-66 (71)
77 2l5u_A Chromodomain-helicase-D 57.3 2.1 7.3E-05 27.8 -0.1 51 46-108 6-58 (61)
78 1wen_A Inhibitor of growth fam 55.0 5.5 0.00019 26.8 1.7 49 48-109 13-66 (71)
79 2l43_A N-teminal domain from h 52.3 2.4 8.1E-05 29.7 -0.5 53 49-108 23-75 (88)
80 3v43_A Histone acetyltransfera 51.1 8.3 0.00029 27.6 2.3 39 51-92 5-43 (112)
81 1mm2_A MI2-beta; PHD, zinc fin 49.8 1.7 5.7E-05 28.3 -1.6 49 48-108 6-56 (61)
82 2k16_A Transcription initiatio 48.6 3.2 0.00011 27.6 -0.3 52 49-109 16-69 (75)
83 2lbm_A Transcriptional regulat 47.0 7.2 0.00025 29.9 1.4 48 48-107 60-116 (142)
84 3ql9_A Transcriptional regulat 44.0 15 0.0005 27.7 2.7 48 48-107 54-110 (129)
85 2vpb_A Hpygo1, pygopus homolog 42.1 7 0.00024 25.8 0.6 35 47-90 4-40 (65)
86 3o36_A Transcription intermedi 39.8 3.4 0.00012 32.0 -1.5 47 50-108 3-51 (184)
87 2jny_A Uncharacterized BCR; st 39.2 10 0.00036 25.4 1.1 35 70-114 9-43 (67)
88 2ysm_A Myeloid/lymphoid or mix 38.4 4.9 0.00017 28.6 -0.7 52 48-108 4-63 (111)
89 4gne_A Histone-lysine N-methyl 38.0 6.5 0.00022 28.6 -0.1 50 48-109 12-68 (107)
90 3vk6_A E3 ubiquitin-protein li 37.9 19 0.00064 26.3 2.4 35 73-113 17-51 (101)
91 2yt5_A Metal-response element- 37.3 11 0.00037 24.2 1.0 53 49-108 4-61 (66)
92 3u5n_A E3 ubiquitin-protein li 37.1 3.8 0.00013 32.4 -1.6 50 48-109 4-55 (207)
93 2ki9_A Cannabinoid receptor 2; 35.8 11 0.00038 20.9 0.7 13 154-166 8-20 (33)
94 2ri7_A Nucleosome-remodeling f 35.6 5.4 0.00018 30.4 -0.9 52 48-108 5-59 (174)
95 2m0f_A Zinc finger and BTB dom 35.4 15 0.0005 17.8 1.1 13 100-112 3-15 (29)
96 1znf_A 31ST zinc finger from X 33.9 14 0.00049 17.7 0.9 13 100-112 2-14 (27)
97 2kvh_A Zinc finger and BTB dom 33.8 15 0.00051 17.8 0.9 14 99-112 3-16 (27)
98 2jmi_A Protein YNG1, ING1 homo 32.4 12 0.00041 26.4 0.6 49 47-107 22-75 (90)
99 1ard_A Yeast transcription fac 31.1 16 0.00055 17.7 0.8 13 100-112 3-15 (29)
100 1lgh_A LH II, B800/850, light 30.9 13 0.00045 24.4 0.5 34 139-172 5-38 (56)
101 4fo9_A E3 SUMO-protein ligase 30.3 23 0.00077 31.1 2.0 39 69-110 222-265 (360)
102 2kvf_A Zinc finger and BTB dom 30.2 18 0.00062 17.5 0.9 13 100-112 4-16 (28)
103 2jr6_A UPF0434 protein NMA0874 30.1 18 0.00063 24.2 1.1 34 71-114 8-41 (68)
104 1rik_A E6APC1 peptide; E6-bind 28.4 21 0.00071 17.3 0.9 13 100-112 3-15 (29)
105 2kvg_A Zinc finger and BTB dom 28.3 19 0.00063 17.6 0.7 13 99-111 3-15 (27)
106 2vnf_A ING 4, P29ING4, inhibit 28.2 3.9 0.00013 26.5 -2.5 47 49-107 8-58 (60)
107 2lvu_A Zinc finger and BTB dom 34.3 12 0.00042 18.0 0.0 13 100-112 3-15 (26)
108 2m0d_A Zinc finger and BTB dom 27.9 20 0.0007 17.3 0.9 14 99-112 3-16 (30)
109 3i2d_A E3 SUMO-protein ligase 27.3 27 0.00093 30.7 2.0 39 69-110 256-299 (371)
110 1wep_A PHF8; structural genomi 27.3 21 0.00072 23.9 1.1 53 48-109 9-64 (79)
111 1klr_A Zinc finger Y-chromosom 26.0 22 0.00075 17.1 0.8 13 100-112 3-15 (30)
112 2elx_A Zinc finger protein 406 25.6 23 0.00079 18.1 0.8 14 99-112 7-20 (35)
113 2xb1_A Pygopus homolog 2, B-ce 25.1 16 0.00055 26.1 0.1 50 52-109 4-62 (105)
114 1paa_A Yeast transcription fac 25.0 24 0.00082 17.2 0.8 13 100-112 3-15 (30)
115 1we9_A PHD finger family prote 24.9 26 0.00088 22.3 1.1 53 48-108 3-58 (64)
116 2m0e_A Zinc finger and BTB dom 24.8 23 0.00079 16.9 0.7 13 100-112 3-15 (29)
117 2js4_A UPF0434 protein BB2007; 24.5 23 0.0008 23.8 0.9 34 71-114 8-41 (70)
118 2lvt_A Zinc finger and BTB dom 30.2 16 0.00054 17.9 0.0 13 100-112 3-15 (29)
119 2elt_A Zinc finger protein 406 24.4 26 0.0009 18.0 0.9 14 99-112 9-22 (36)
120 1srk_A Zinc finger protein ZFP 24.1 27 0.00091 17.9 0.9 14 99-112 7-20 (35)
121 2elr_A Zinc finger protein 406 23.7 26 0.00088 18.1 0.8 14 99-112 9-22 (36)
122 2k9h_A Glycoprotein; hantaviru 23.2 30 0.001 22.7 1.1 17 97-113 1-17 (57)
123 2hfq_A Hypothetical protein; A 23.0 40 0.0014 24.8 1.9 25 87-111 55-86 (109)
124 1wev_A Riken cDNA 1110020M19; 22.9 23 0.00079 24.4 0.6 53 51-110 16-74 (88)
125 2els_A Zinc finger protein 406 22.7 28 0.00097 18.0 0.9 14 99-112 9-22 (36)
126 1f62_A Transcription factor WS 22.4 43 0.0015 20.2 1.8 46 53-107 2-49 (51)
127 2lvr_A Zinc finger and BTB dom 28.1 18 0.00063 17.6 0.0 13 100-112 4-16 (30)
128 2elv_A Zinc finger protein 406 22.0 31 0.0011 17.9 0.9 14 99-112 9-22 (36)
129 1p7a_A BF3, BKLF, kruppel-like 21.8 28 0.00097 18.1 0.7 13 99-111 11-23 (37)
130 2elo_A Zinc finger protein 406 21.1 28 0.00097 18.1 0.6 14 99-112 9-22 (37)
131 2elp_A Zinc finger protein 406 21.1 34 0.0011 17.8 1.0 14 99-112 9-22 (37)
132 2elq_A Zinc finger protein 406 20.9 34 0.0012 17.7 0.9 14 99-112 9-22 (36)
133 2ko5_A Ring finger protein Z; 20.5 23 0.0008 25.7 0.2 47 51-112 28-74 (99)
134 1njq_A Superman protein; zinc- 20.3 34 0.0012 18.2 0.9 14 99-112 6-19 (39)
135 2pk7_A Uncharacterized protein 20.1 31 0.0011 23.1 0.8 34 71-114 8-41 (69)
136 1xwh_A Autoimmune regulator; P 20.1 33 0.0011 22.1 0.9 48 48-107 5-54 (66)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.81 E-value=7.5e-21 Score=128.73 Aligned_cols=57 Identities=33% Similarity=0.750 Sum_probs=51.1
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++++..||||+++. ++++++||+|+|+++|||++||++|++.+++.+||+|+++|+.
T Consensus 3 ~~~~~~CrIC~~~~-------~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL-------GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC-------SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC-------CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46788999999863 2457899999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-18 Score=119.73 Aligned_cols=60 Identities=28% Similarity=0.680 Sum_probs=52.8
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
..++..|+||+++.++ ++++++||+|+|+++++|++||++|++.+++.+|++|++.|...
T Consensus 12 ~~~~~~C~IC~~~~~~-----~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDD-----ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCS-----SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccC-----CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3557899999987653 45789999999999999999999999999989999999999754
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.27 E-value=6e-07 Score=59.69 Aligned_cols=53 Identities=26% Similarity=0.541 Sum_probs=42.3
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+.+..|.||++.... ......+||+ ..+|..|+.+|++.+. +|++|+..+...
T Consensus 12 ~~~~~C~IC~~~~~~----~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEE----GEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCS----SSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccC----CCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 456789999988753 2346778986 7899999999998855 799999987654
No 4
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.25 E-value=4.4e-07 Score=57.58 Aligned_cols=52 Identities=21% Similarity=0.514 Sum_probs=41.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
..+..|.||++...+. ......+||. ..+|..|+.+|++.+ .+|++|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~---~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS---RVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTT---TSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCC---CcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 3467899999987532 1346788986 889999999999987 69999998764
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.3e-07 Score=60.38 Aligned_cols=53 Identities=17% Similarity=0.471 Sum_probs=41.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+.+..|.||++..... .....+||. ..+|..|+.+|++.+. +|++|+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPR----DELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSS----SCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCC----CcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 4467899999987642 234456886 7899999999998764 999999987654
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.23 E-value=1.2e-06 Score=63.60 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=44.3
Q ss_pred CCCceeEeccCCCCCCC----------CCC-CCeecccccCCCCCccCHHHHHHHHHh---cCCcccccCCceecccccc
Q 030666 50 AERDCRICHLGLEGNSQ----------ELM-PPIELGCSCKGDLGYAHKQCAETWFKI---RGNMTCEICGSTADNIAGE 115 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~----------e~~-~~l~~pC~CkGsl~~vH~~CL~~W~~~---k~~~~CEiC~~~y~~v~~~ 115 (173)
.+..|-||++....... +.. ....+||. ..+|..||.+|+.. +...+|++|+..|....+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 35689999988754210 000 11267897 89999999999976 4578999999999876553
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.22 E-value=4.6e-07 Score=57.64 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=39.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecc-cccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELG-CSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~p-C~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+++..|.||++....+ .....+| |+ ...|..|+.+|++. +.+|++|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~----~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDG----EEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTT----SCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCC----CceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 3467899999987642 3456676 76 78999999999976 458999998753
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=7.3e-07 Score=60.43 Aligned_cols=52 Identities=25% Similarity=0.590 Sum_probs=41.1
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++...|.||++..... .....+||. ..+|..|+.+|++.+ .+|++|++.+..
T Consensus 21 ~~~~~C~IC~~~~~~~----~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR----QLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBT----CEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCC----CeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 4578999999887641 234678987 789999999999875 489999987653
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=60.73 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=39.3
Q ss_pred CCCceeEeccCCCCC------C-CCCCCCeecc-cccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGN------S-QELMPPIELG-CSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~------~-~e~~~~l~~p-C~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++..|-||++..++. + ........+| |. ...|.+|+.+|++.+. +|++|++.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 356788888877541 0 0112355555 87 8999999999998764 99999988653
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.04 E-value=1.2e-06 Score=59.59 Aligned_cols=52 Identities=17% Similarity=0.523 Sum_probs=40.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
..+..|.||++..... .....+||. ..+|..|+.+|++.+ .+|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALG----ESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTT----SCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC----CCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 3467899999987642 234567887 789999999999754 699999998764
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.03 E-value=1.3e-06 Score=61.72 Aligned_cols=51 Identities=29% Similarity=0.580 Sum_probs=40.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+++..|.||++....+ .....+||+ ..+|..|+.+|++.+ .+|++|+..+.
T Consensus 38 ~~~~~C~IC~~~~~~~----~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG----DVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTT----CEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCC----CcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 4578899999887641 346678987 889999999999754 49999998764
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.98 E-value=3.2e-06 Score=57.39 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=41.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecc-cccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELG-CSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~p-C~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++..|.||++... ++..+| |. +..|+.|+.+|++.++..+|++|+..+.
T Consensus 14 ~~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT-------DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT-------TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh-------CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4678999998765 477888 87 8899999999999988889999999643
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.3e-06 Score=56.20 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++...|-||++...+..........+||. ..+|..|+.+|++. +.+|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 45678999998865321111223678997 88999999999987 459999998865
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.90 E-value=6.8e-06 Score=60.60 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=40.0
Q ss_pred CCCceeEeccCCCCCC-----------CCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNS-----------QELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~-----------~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+...|-||++..++.. .+......+||+ ...|..|+.+|++. +.+|++|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 4678999998876420 011124567888 89999999999986 469999999865
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.89 E-value=6.9e-06 Score=54.18 Aligned_cols=51 Identities=20% Similarity=0.509 Sum_probs=40.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+++..|.||++.... ....+||+ ...|..|+.+|++.+ .+|++|+..+..+
T Consensus 3 ~~~~~C~IC~~~~~~------~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN------YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS------CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC------CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 456789999988642 24778987 779999999999865 5999999987654
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=4.8e-06 Score=55.59 Aligned_cols=50 Identities=22% Similarity=0.486 Sum_probs=41.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh-cCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI-RGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~-k~~~~CEiC~~~y~ 110 (173)
+++..|.||++... ++..+||. ..+|..|+.+|++. .++.+|++|+..+.
T Consensus 18 ~~~~~C~IC~~~~~-------~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ-------KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS-------SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC-------CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34678999998764 46777987 88999999999985 45779999999875
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=8.2e-06 Score=56.08 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=44.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc-CCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR-GNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k-~~~~CEiC~~~y~~v 112 (173)
++...|.||++..... ...+..+||. ..+|+.|+.+|++.+ +..+|++|+..+..-
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEE---QLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTT---SSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCcccccc---CCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3467899999887642 1227788986 889999999999986 468999999987643
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.85 E-value=1.7e-05 Score=53.72 Aligned_cols=49 Identities=22% Similarity=0.523 Sum_probs=41.3
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc----CCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR----GNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k----~~~~CEiC~~~y~ 110 (173)
+...|.||++... ++..+||. +.+|+.|+.+|++.+ +..+|++|+..+.
T Consensus 18 ~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLK-------EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCS-------SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhC-------cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4678999998764 46778987 889999999999985 4789999999876
No 19
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.85 E-value=2.9e-06 Score=56.29 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=41.3
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+++..|-||++...+..........+||. ...|..|+.+|++.+ .+|++|+..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 45788999998765311011234778997 889999999999876 49999998876
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.2e-06 Score=54.42 Aligned_cols=49 Identities=20% Similarity=0.494 Sum_probs=39.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.++..|.||++... ++..+||. ...|+.|+.+|++ +++.+|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC-------SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEES-------SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhc-------CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 34678999998765 35567887 7899999999997 56679999998865
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.7e-05 Score=51.69 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=36.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc-CCcccccC
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR-GNMTCEIC 105 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k-~~~~CEiC 105 (173)
+++..|.||++... ++..+||. ...|+.|+++|++.+ ++.+|++|
T Consensus 18 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ-------KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS-------SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC-------CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678999998764 47778987 889999999999964 46799998
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.9e-05 Score=53.47 Aligned_cols=51 Identities=27% Similarity=0.570 Sum_probs=41.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh----cCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI----RGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~----k~~~~CEiC~~~y~~ 111 (173)
++...|.||++... ++..+||. ..+|+.|+.+|++. .+..+|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT-------QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS-------SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccC-------CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34678999998865 36667887 78999999999988 457899999998763
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.79 E-value=2.9e-06 Score=54.93 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++..|.||++...+..........+||+ ...|.+|+++|++. +.+|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 3568999998765310001234678997 88999999999987 459999998866
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=5.6e-06 Score=55.51 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=39.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++..|.||++... ++..+||. ..+|..|+.+|++.+ .+|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~-------~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCV-------HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCS-------SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred CCCCCccCCcccC-------CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 4678999998764 46778987 889999999999764 699999998763
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=2e-05 Score=53.90 Aligned_cols=48 Identities=25% Similarity=0.603 Sum_probs=40.1
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+....|.||++... ++..+||. ..+|..|+.+|++. ..+|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQ-------NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCC-------SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhc-------CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34678999998764 47788997 78899999999976 559999999986
No 26
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=50.05 Aligned_cols=45 Identities=24% Similarity=0.741 Sum_probs=36.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh-cCCcccccC
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI-RGNMTCEIC 105 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~-k~~~~CEiC 105 (173)
+++..|.||++... ++..+||. ...|+.|+.+|++. +++.+|++|
T Consensus 13 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK-------EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS-------SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccC-------ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 34678999998865 35667887 78999999999875 567899988
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=54.84 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=42.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecc-cccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELG-CSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~p-C~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.++..|.||++... ++..+| |. +..++.|+.+|+..++..+|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT-------DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS-------SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc-------CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34689999998764 478889 87 7889999999999888899999999873
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=2.8e-05 Score=52.19 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=39.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++..|.||++... ++... ||. ...|+.|+.+|++. ..+|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI-------DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS-------SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH-------CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 4678999998765 35554 997 88899999999987 4699999998764
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=7.4e-06 Score=54.43 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=39.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
.+...|.||++... + ..+||. ..+|..|+.+|++ .+.+|++|++.+..
T Consensus 13 ~~~~~C~IC~~~~~-------~-~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA-------D-LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC-------S-EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc-------C-cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 34678999998754 2 778997 7899999999998 56799999988763
No 30
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=3.8e-05 Score=53.56 Aligned_cols=51 Identities=24% Similarity=0.407 Sum_probs=38.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
....|-||++.... + ..-+ .| -.-+|..|+.+||+.+++.+|++|++....
T Consensus 14 ~i~~C~IC~~~i~~-----g--~~C~-~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-----G--QSCE-TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSS-----S--EECS-SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHccc-----C--CccC-CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45789999988753 1 1111 22 256899999999998888999999987654
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.57 E-value=3.7e-05 Score=51.98 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.++-.|.||++... ++..+||+ ...++.|+.+|++. ++.+|++|+..+.
T Consensus 6 ~~~~~C~IC~~~~~-------~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMK-------DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCS-------SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred cccCCCCCcccccc-------CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 34678999998764 47888987 88999999999974 5789999999875
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.50 E-value=1.3e-05 Score=54.17 Aligned_cols=51 Identities=27% Similarity=0.559 Sum_probs=41.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc-----CCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR-----GNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k-----~~~~CEiC~~~y~~ 111 (173)
+++..|.||++... ++..+||. +.+|+.|+.+|++.+ +..+|++|+..+..
T Consensus 10 ~~~~~C~IC~~~~~-------~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT-------EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS-------SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC-------CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34688999998764 36667987 889999999999873 47899999998763
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.43 E-value=2.5e-05 Score=58.77 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=0.9
Q ss_pred CCCceeEeccCCCCCC-----------CCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 50 AERDCRICHLGLEGNS-----------QELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~-----------~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+...|-||++..++.. .+.-..+..||. ...|..|+.+|++.+ .+|++|+..+..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp CC-----------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 3568999998875421 011122335787 889999999999884 599999998653
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.39 E-value=0.00011 Score=51.19 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=42.8
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIA 113 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~ 113 (173)
+++..|-||++..+. .+....||.| | ..+++.|+.++.+. ++..|++|+..|..-.
T Consensus 9 ~~~~~CpICle~~~~-----~d~~~~p~~C-G--H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-----DDINFFPCTC-G--YQICRFCWHRIRTD-ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCT-----TTTTCCSSTT-S--CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcc-----ccccccccCC-C--CCcCHHHHHHHHhc-CCCCCCCCCCccCCCc
Confidence 457899999997653 3456678766 3 66899999998754 6789999999988543
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.36 E-value=0.0001 Score=52.78 Aligned_cols=49 Identities=20% Similarity=0.505 Sum_probs=39.9
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhc-CCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIR-GNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k-~~~~CEiC~~~y~~ 111 (173)
...|.||++... ++..+||. +.+|..|+.+|+..+ +..+|++|+..+..
T Consensus 21 ~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK-------EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS-------SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc-------CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 468999998764 46667987 889999999999975 45799999988663
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.33 E-value=6e-05 Score=49.43 Aligned_cols=52 Identities=17% Similarity=0.427 Sum_probs=38.4
Q ss_pred CCCceeEecc-CCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHL-GLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~-~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++..|.||++ ....+ ......+||+ ..+|+.|+.+|+.. +..+|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~---~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP---SLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCS---SCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCC---ccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3578999998 43321 0112567998 88999999999874 5679999999875
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.33 E-value=8e-05 Score=53.27 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=40.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCee-cccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIE-LGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~-~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++..|.||++... ++.. .+|+ ...|..|+.+|++.++ .+|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~-------~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLR-------DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCS-------SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCC
T ss_pred CCCCCccCCcccc-------CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCC
Confidence 3578999998875 4677 8998 8899999999999874 69999999875
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.29 E-value=9e-05 Score=54.58 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=40.0
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... ++..+||+ +..|+.|+.+|+. .+..+|++|+..+..
T Consensus 52 ~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF-------RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS-------SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc-------CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 568999998765 47778997 7889999999998 455699999998864
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.27 E-value=6.4e-05 Score=56.65 Aligned_cols=47 Identities=26% Similarity=0.624 Sum_probs=38.8
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... ++..+||+ +.+|..|+.+|++. +.+|++|+..+..
T Consensus 53 ~~~C~iC~~~~~-------~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI-------EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS-------SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccC-------CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 457999998764 47888997 88999999999975 4589999988754
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.22 E-value=0.00012 Score=56.51 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=38.8
Q ss_pred CCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+..|.||++... ++... ||. +.+|..|+.+|++. ++.+|++|+..+.
T Consensus 54 ~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLK-------NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCS-------SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCcccChHhh-------CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 468999998765 35655 888 88999999999984 4679999999874
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=51.41 Aligned_cols=47 Identities=19% Similarity=0.445 Sum_probs=38.3
Q ss_pred CCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... ++... ||+ +..|..|+.+|++.+ .+|++|+..+..
T Consensus 22 ~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN-------IAMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS-------SEEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCcccCChhhC-------CcCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 578999998765 35555 887 889999999999854 699999998764
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.04 E-value=7.5e-05 Score=54.33 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=42.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
.++..|-||++...+..........+||+ ...|..|+.+|++.+. +|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCccc
Confidence 34678999998765310001234788998 8899999999998654 999999987644
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.03 E-value=0.00026 Score=51.79 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=40.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+++..|.||++... ++..+||+ ...++.|+.+|++.++. +|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR-------EAVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc-------CeEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 34678999998764 46778987 88999999999987653 89999988764
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.02 E-value=0.00016 Score=52.02 Aligned_cols=49 Identities=16% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
++..|.||++... ++... ||+ +..|..|+.+|++.+ .+|++|+..+...
T Consensus 14 ~~~~C~IC~~~~~-------~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI-------DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS-------SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh-------CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCcccccc
Confidence 3678999998764 46665 998 888999999999865 6999999987643
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.00029 Score=54.30 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
...|.||++... ++..+||. ..+++.|+.+|+.. +..+|++|+..+...
T Consensus 78 ~~~C~IC~~~~~-------~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY-------QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS-------SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc-------CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 568999998764 47778997 78899999999985 556999999987743
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.94 E-value=0.00012 Score=53.28 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=41.1
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
+++...|-||++...+...........+|+ ...|..|+.+|++.+ .+|++|+..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCC
Confidence 355788999998765311011223667886 889999999999875 49999998875
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.78 E-value=0.00051 Score=49.81 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=39.7
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... ++..+||+ ...|..|+.+|++.. +.+|++|+..+..
T Consensus 23 ~~~C~IC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-------DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-------CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 568999998764 47778987 788999999999874 4589999998764
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.74 E-value=0.00018 Score=52.17 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=39.9
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
+..|.||++... ++..+||. +..|+.|+.+|++. ++.+|++|+..+..
T Consensus 15 ~~~C~iC~~~~~-------~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-------EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-------SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-------ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 568999998764 47788997 88999999999964 45799999999764
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.58 E-value=0.0013 Score=58.66 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=40.7
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
....|.||++... ++...||+ +..|..|+.+|+.. +..+|++|+..+...
T Consensus 331 ~~~~C~ICle~~~-------~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDK-------DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBC-------CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCC-------CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3579999998764 47889998 77799999999984 456999999987643
No 50
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.26 E-value=0.00072 Score=45.83 Aligned_cols=44 Identities=27% Similarity=0.470 Sum_probs=36.8
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+..|.||++... ++..+||+ +. +...|+.+| .+|++|+..+...
T Consensus 24 ~~~C~iC~~~~~-------~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI-------AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC-------CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC-------CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 578999998754 57888997 77 899999999 6999999987643
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.23 E-value=0.00095 Score=48.68 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=37.9
Q ss_pred CCCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
++..|.||++... ++..+ ||. ...++.|+.+|+. .+|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~-------~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR-------EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS-------SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh-------CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 3678999998764 46777 897 8889999999998 68999999874
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.08 E-value=0.0029 Score=48.68 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=40.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
++.-.|-||++... ++..+||. ..+.+.|+.+|++.++ .+|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~-------~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR-------EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc-------CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 45679999998765 47788887 7788999999998754 399999987654
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.08 E-value=0.002 Score=42.65 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=37.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeec--ccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIEL--GCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~--pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+++..|.||++... +.... ||+ .. +=.+|+.+|.+. +.+|++|+..+..+
T Consensus 6 ~~~~~C~IC~~~~~-------~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 6 NAIEPCVICQGRPK-------NGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQMI 58 (64)
T ss_dssp GGGSCCTTTSSSCS-------CEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCEE
T ss_pred CCcCCCCcCCCCCC-------CEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhce
Confidence 34678999998754 34544 998 55 347999999974 45899999987643
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.96 E-value=0.00088 Score=51.11 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=39.4
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCcee
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTA 109 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y 109 (173)
+++..|.||++... ++..++|+ ...++.|+.+|++. ++.+|++|+.+.
T Consensus 29 ~~~~~C~IC~~~~~-------~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLR-------RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CcCcCCCCCChhhc-------CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 45678999998765 47888988 78899999999974 557999999864
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.90 E-value=0.0019 Score=41.40 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=36.3
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
.++..|.||++... ++..+||. ...++.|+.+ ...+|++|+..+..
T Consensus 4 ~~~~~C~IC~~~~~-------~p~~l~Cg-----H~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-------CPKLLPCL-----HTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB-------CCSCSTTS-----CCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC-------CeEEcCCC-----CcccHHHHcc-----CCCCCCcCCcEeec
Confidence 45678999998765 46778987 6778999887 36799999988764
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.75 E-value=0.006 Score=54.10 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=38.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCC---------cccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGN---------MTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~---------~~CEiC~~~y~ 110 (173)
+....|-||++...++ +..-...|.=.-=-+..|..||.+||+..++ .+|+.|+++..
T Consensus 306 e~~~ECaICys~~l~~----g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDG----GEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTT----CCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCC----CCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4578999999886541 2222233420000178999999999987432 58999999765
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.64 E-value=0.0037 Score=41.19 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=36.9
Q ss_pred CCCceeEeccCCCCCCCCCCCCee--cccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIE--LGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~--~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
....|.||++... +... .||+ .. +-..|+.+|.+.+ .+|++|+..+..+
T Consensus 6 ~~~~C~IC~~~~~-------~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~~~ 57 (63)
T 2vje_B 6 LLKPCSLCEKRPR-------DGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQLV 57 (63)
T ss_dssp GGSBCTTTSSSBS-------CEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCCEE
T ss_pred cCCCCcccCCcCC-------CeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhhce
Confidence 3678999998754 2334 4998 65 6789999998653 6999999987643
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.63 E-value=0.0097 Score=39.86 Aligned_cols=47 Identities=19% Similarity=0.480 Sum_probs=36.7
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
.++...|.||++... +...+||. +. +-..|+.+ ..+|++|+..+..+
T Consensus 12 ~~~~~~C~IC~~~~~-------~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV-------NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCC-------CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCC-------CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 345789999998653 57889998 55 77899983 36999999987654
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.50 E-value=0.0076 Score=41.91 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=39.6
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
.++-.|-||++-.. +|..+||+ ...-+.|+++|+.. +.+|++|+..+.
T Consensus 12 p~~~~CpI~~~~m~-------dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT-------DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred chheECcccCchhc-------CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCC
Confidence 34789999998875 58889985 66779999999985 469999998865
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.42 E-value=0.0069 Score=48.90 Aligned_cols=49 Identities=10% Similarity=-0.049 Sum_probs=39.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
...-.|-||++-.. +|.++||+ ...-+.|+++|+...+. +|++|+.++.
T Consensus 206 ~~~~~c~i~~~~~~-------dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMR-------EPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCS-------SEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCC
T ss_pred CcccCCcCcCCHhc-------CCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCc
Confidence 34788999998875 58999985 56668999999987554 4999998875
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.34 E-value=0.0057 Score=44.07 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=40.1
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
.++-.|-||++-.. +|..+||+ ...-+.|+++|+.. +.+|++|+..+..
T Consensus 27 p~~~~CpI~~~~m~-------dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT-------DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS-------SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc-------CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 34789999998775 58999985 66789999999984 5799999998763
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.29 E-value=0.012 Score=48.74 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=39.1
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccc-cCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCS-CKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~-CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
....|-||++-... + . -|. |. ...|..|+.+|++.+++.+|+.|+.....-
T Consensus 179 ~i~~C~iC~~iv~~-----g--~--~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-----G--Q--SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSS-----C--E--ECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhC-----C--c--ccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 47899999987653 1 1 222 32 679999999999998889999999976544
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.011 Score=39.71 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=34.5
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+..|.||++... ++..+||. +. +...|+.+ ...|++|+..+...
T Consensus 25 ~~~C~IC~~~~~-------~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI-------AIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC-------CBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC-------CEEEecCC-----CHHHHHHHhhC------CCCCccCCceecCc
Confidence 567999998754 47778997 66 78999964 36999999987653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.42 E-value=0.015 Score=46.51 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=40.5
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
..+-.|.||++-.. +|.++||+ ...=+.|+++|+...+. +|++|+.++..
T Consensus 104 p~~f~CPI~~elm~-------DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR-------EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS-------SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC-------CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 34789999998775 58889985 56779999999988665 79999988753
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.38 E-value=0.024 Score=39.89 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=38.4
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecc-cccCCCCCccCHHHHHHHHHhc----CCccccc--CCce
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELG-CSCKGDLGYAHKQCAETWFKIR----GNMTCEI--CGST 108 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~p-C~CkGsl~~vH~~CL~~W~~~k----~~~~CEi--C~~~ 108 (173)
..+-.|-||++-.. +|..+| |. ...-+.|+++|+... +..+|++ |...
T Consensus 5 ~~~~~CPI~~~~~~-------dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK-------KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS-------SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc-------CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34678999998765 588886 87 667799999999874 4689999 8855
No 66
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.13 E-value=0.02 Score=41.01 Aligned_cols=50 Identities=14% Similarity=-0.070 Sum_probs=39.4
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADN 111 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~ 111 (173)
.++-.|-||++-.. +|.++||. | ...-+.|+++|+.. +.+|++|+..+..
T Consensus 20 p~~~~CpI~~~~m~-------dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC-------DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS-------SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc-------CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 34789999998775 58888876 2 34668999999986 4699999998763
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=92.81 E-value=0.018 Score=50.20 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=37.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
++..|.||++... ++..+||+ .. +...|+.+| ..|++|+..+..+
T Consensus 294 ~~~~C~IC~~~~~-------~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV-------SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC-------CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC-------ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 4689999998764 57888998 66 889999988 6999999987643
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.78 E-value=0.043 Score=38.18 Aligned_cols=50 Identities=14% Similarity=0.402 Sum_probs=37.3
Q ss_pred CCCceeEeccCCCCCCCCCCCCee-cccccCCCCCccCHHHHHHHHHhc---C---Cccccc--CCcee
Q 030666 50 AERDCRICHLGLEGNSQELMPPIE-LGCSCKGDLGYAHKQCAETWFKIR---G---NMTCEI--CGSTA 109 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~-~pC~CkGsl~~vH~~CL~~W~~~k---~---~~~CEi--C~~~y 109 (173)
+...|.||++.... ...+. .||. +...++|+.+++..+ | ..+|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~-----~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPV-----EQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBG-----GGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCccccc-----ccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 46789999987653 12233 4798 778899999999864 2 479999 99874
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=90.93 E-value=0.056 Score=37.00 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=34.8
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
+..|.||++... ++...||+ +. +=..|+.+| ..|++|+..+...
T Consensus 18 ~~~C~IC~~~~~-------~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-------NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-------CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-------cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 568999998753 57889998 55 557899877 3999999987764
No 70
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.55 E-value=0.51 Score=34.14 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=41.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCc-cCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGY-AHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~-vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
....+|.||-+..... +.+++++ -|. .-+| |=+.|.+.=.+. |+..|+.||+.|.-..+
T Consensus 14 ~~~qiCqiCGD~VG~~--~~Ge~FV-AC~---eC~FPvCrpCyEYErke-G~q~CpqCktrYkr~kg 73 (93)
T 1weo_A 14 LDGQFCEICGDQIGLT--VEGDLFV-ACN---ECGFPACRPCYEYERRE-GTQNCPQCKTRYKRLRG 73 (93)
T ss_dssp CSSCBCSSSCCBCCBC--SSSSBCC-SCS---SSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCCCTT
T ss_pred cCCCccccccCccccC--CCCCEEE-eee---ccCChhhHHHHHHHHhc-cCccccccCCccccccC
Confidence 3578999999876543 2355554 453 2354 889999876655 89999999999985443
No 71
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.61 E-value=0.19 Score=42.69 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=39.9
Q ss_pred CCCceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCccccc--CCceec
Q 030666 50 AERDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEI--CGSTAD 110 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEi--C~~~y~ 110 (173)
.+..|-||++-.. +|..+ .|+ +..=+.|+.+|+...+..+|++ |+..+.
T Consensus 180 ~el~CPIcl~~f~-------DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYE-------APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCS-------SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCccc-------CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4678999998875 46664 776 5677899999999878889999 999765
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=87.01 E-value=0.23 Score=32.46 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=34.1
Q ss_pred CceeEeccCCCCCCCCCCCCeec-ccccCCCCCccCHHHHHHHHHhcCCcccccCCceec
Q 030666 52 RDCRICHLGLEGNSQELMPPIEL-GCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTAD 110 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~~-pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~ 110 (173)
..|.|+++... ++.+. ++. ...=+.|+++|++..+ +|++.++...
T Consensus 4 ~~CpIs~~~m~-------dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPR-------RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCS-------SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCC-------CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 46888887765 46776 554 5677899999999765 6999998765
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=81.38 E-value=0.44 Score=31.96 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcccccCCcee
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGSTA 109 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~y 109 (173)
...|.||..+. +.|. |.+=-+..|..||.-.+.. ++...|..|...-
T Consensus 12 ~~~C~vC~~~~--------~ll~----Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGT--------DVLR----CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCT--------TCEE----CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCC--------eEEE----CCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 56799997542 2222 3344488999999877765 4789999997653
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.72 E-value=1.3 Score=31.58 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeec--ccccCCCCCccCHHHHHHHHHh--cCCcccccCCce
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIEL--GCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGST 108 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~--pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~ 108 (173)
+..+...| ||..... + .++. -|.|+. .|.|..|+. +.. +++..|+.|...
T Consensus 32 d~~e~~yC-iC~~~~~------g-~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY------G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCC------S-CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCC------C-CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 44567888 9987542 2 2331 223542 799999997 443 367899999764
No 75
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=63.41 E-value=2.5 Score=27.47 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=25.7
Q ss_pred ceeeecchhHHHHHHHHHHHHHHHhhhccccCC
Q 030666 141 QNLWHGRRIMNFLLACMVFAFVISWLFHFKVLS 173 (173)
Q Consensus 141 ~~~w~~~~~lnfLla~mV~afvlpW~f~~~~~~ 173 (173)
.++|....-...|.|-.+|+|++.-++||.+.|
T Consensus 2 ~kIWl~fDPrr~Lva~~~fl~vlAl~IHfilLS 34 (52)
T 1xrd_A 2 WRIWQLFDPRQALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp GGGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456766666777888889999999999987753
No 76
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.12 E-value=1.3 Score=29.93 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=34.4
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
...+...|.||..+...+ ++.|+ -| .+=-..+|+.|+.-=..-+|...|+.|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~----~~~ll-~C--D~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQN----SNVIL-FC--DMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCS----SSCEE-EC--SSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC----CCCEE-EC--CCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 345678999999876331 23343 23 233368899999743333577888888643
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=57.34 E-value=2.1 Score=27.79 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=33.7
Q ss_pred CCCCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH--hcCCcccccCCce
Q 030666 46 LGDKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK--IRGNMTCEICGST 108 (173)
Q Consensus 46 ~~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~--~k~~~~CEiC~~~ 108 (173)
.+++....|.+|..+. +.+. |.+=-+..|..||.-=+. -++...|..|...
T Consensus 6 ~~~~~~~~C~vC~~~g--------~ll~----CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGG--------EIIL----CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSCCS--------SEEE----CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCCCC--------cEEE----CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3445678999998742 2222 334447899999986433 2567899999753
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.99 E-value=5.5 Score=26.77 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=32.0
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccc---cCCCCCccCHHHHHHHHHh--cCCcccccCCcee
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCS---CKGDLGYAHKQCAETWFKI--RGNMTCEICGSTA 109 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~---CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~y 109 (173)
..+...| ||..... + .++ -|. |.. .+.|..|+. +.. ++...|+.|...-
T Consensus 13 ~~~~~~C-~C~~~~~------g-~MI-~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYC-LCHQVSY------G-EMI-GCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCS-TTCCCSC------S-SEE-CCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCEE-ECCCCCC------C-CEe-EeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3457788 8987542 2 343 332 432 799999998 443 3678999997653
No 79
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.34 E-value=2.4 Score=29.71 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCce
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGST 108 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~ 108 (173)
++...|.||..+...+ ++.|+ -|. +=-..+|..|+.-=..-+|...|+.|...
T Consensus 23 ~~~~~C~vC~~~~s~~----~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQN----SNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCS----EEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCC----CCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCc
Confidence 4568999999876331 22333 332 33357899999743334578889998754
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.06 E-value=8.3 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHH
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAET 92 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~ 92 (173)
..+|.+|+...+......++.|+ .|.+=-+..|..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll---~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELI---SCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCE---ECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhce---EhhhcCCCCCCchhcC
Confidence 57899999875432111233444 2334447899999964
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.81 E-value=1.7 Score=28.34 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=31.3
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcccccCCce
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGST 108 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~ 108 (173)
+..+..|.+|..+. +.+ - |.+=-+..|..||.-=+.. ++...|..|...
T Consensus 6 d~~~~~C~vC~~~g--------~ll--~--Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGG--------ELL--C--CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCS--------SCB--C--CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCC--------CEE--E--cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678899998642 222 2 2233367999999743332 467889999754
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=48.60 E-value=3.2 Score=27.60 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcccccCCcee
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGSTA 109 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~y 109 (173)
.+...|.||....+ ++.++. |.+=-.+.|..|+.-=... .+...|+.|....
T Consensus 16 ~~~~~C~~C~~~~~------~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD------GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS------SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC------CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34567999987753 233432 3333489999999643332 2578899997654
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.01 E-value=7.2 Score=29.87 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH---------hcCCcccccCCc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK---------IRGNMTCEICGS 107 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~---------~k~~~~CEiC~~ 107 (173)
+..+..|++|.++.+ .+ - |..=-+..|..||..=+. ..++..|..|..
T Consensus 60 Dg~~d~C~vC~~GG~--------Ll--c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN--------LI--C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS--------EE--E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc--------EE--e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456889999998643 22 2 223347899999996552 368899999974
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.98 E-value=15 Score=27.71 Aligned_cols=48 Identities=25% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHH------HHh---cCCcccccCCc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETW------FKI---RGNMTCEICGS 107 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W------~~~---k~~~~CEiC~~ 107 (173)
+..+..|+||.++.+ |+ - |.+--+..|.+|+..= -++ ++...|..|..
T Consensus 54 Dg~~~~C~vC~dGG~---------Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---------LI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSE---------EE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCe---------eE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 455778999987642 22 2 3445588999999974 233 57899999954
No 85
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.08 E-value=7 Score=25.82 Aligned_cols=35 Identities=23% Similarity=0.591 Sum_probs=20.4
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCeeccc--ccCCCCCccCHHHH
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIELGC--SCKGDLGYAHKQCA 90 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~~pC--~CkGsl~~vH~~CL 90 (173)
+++....|-+|+.+... +..+ ..| .|+ .|.|..|+
T Consensus 4 ~~~~~~~C~~C~~p~~~-----~~~m-I~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVND-----DQDA-ILCEASCQ---KWFHRICT 40 (65)
T ss_dssp -----CBCTTTCSBCCT-----TSCE-EEBTTTTC---CEEEHHHH
T ss_pred CCCCcCcCccCCCccCC-----CCCe-EecccCcc---ccCchhcc
Confidence 34557789999988653 2233 344 243 89999997
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=39.76 E-value=3.4 Score=31.98 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=32.2
Q ss_pred CCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcccccCCce
Q 030666 50 AERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGST 108 (173)
Q Consensus 50 ~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~ 108 (173)
++..|.+|..+. +.+ - |.+--+..|..|+..-+.. +|...|..|...
T Consensus 3 ~~~~C~~C~~~g--------~ll--~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGG--------ELL--C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCS--------SCE--E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCCC--------eee--e--cCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 467899998653 222 2 3344478999998665543 578999999864
No 87
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=39.23 E-value=10 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=26.6
Q ss_pred CCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 70 PPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 70 ~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
+.|..| .|||.+.|.= .++...|+-|+..|...-|
T Consensus 9 eiL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 9 EVLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEETT
T ss_pred HHhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCCCC
Confidence 355566 7888887742 3577899999999998766
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=38.44 E-value=4.9 Score=28.59 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=32.3
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCC------cccccCCce
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGN------MTCEICGST 108 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~------~~CEiC~~~ 108 (173)
+.++..|.||..+.+. +.|+ -| .+=-+..|..||...+.. ++. +.|.+|+..
T Consensus 4 ~~~~~~C~~C~~~g~~------~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~ 63 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL------LDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQS 63 (111)
T ss_dssp CCCCSCBTTTCCCCCT------TTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTTCCCTTTCCC
T ss_pred CCCCCCCcCCCCCCCC------cCCe-EC--CCCCCCcChHHhCCccccccccCccCCcCCcccccCcc
Confidence 3567899999987642 2232 22 333478999999877643 233 256666654
No 89
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.98 E-value=6.5 Score=28.63 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcc-----cccCCcee
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMT-----CEICGSTA 109 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~-----CEiC~~~y 109 (173)
..++..|.+|..+ + .| .-|..++--+..|..||. +.. +|+.. |.+|+...
T Consensus 12 ~~~~~~C~~C~~~--------G-~l-l~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~~ 68 (107)
T 4gne_A 12 QMHEDYCFQCGDG--------G-EL-VMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSAA 68 (107)
T ss_dssp CSSCSSCTTTCCC--------S-EE-EECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSBC
T ss_pred CCCCCCCCcCCCC--------C-cE-eEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCCC
Confidence 3567889999843 2 22 356533444699999997 443 34443 44555543
No 90
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=37.93 E-value=19 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=27.4
Q ss_pred ecccccCCCCCccCHHHHHHHHHhcCCcccccCCceecccc
Q 030666 73 ELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIA 113 (173)
Q Consensus 73 ~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~ 113 (173)
..||+ ...=..|+..|-+. +.++|+.|+.++..+-
T Consensus 17 mIPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEEE
T ss_pred ecccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeeeE
Confidence 46888 56667899998765 5569999999988773
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=37.33 E-value=11 Score=24.22 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHH-----HhcCCcccccCCce
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWF-----KIRGNMTCEICGST 108 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~-----~~k~~~~CEiC~~~ 108 (173)
.++..|.||..+..++ .+.|+. |.+=-+.+|+.|+.-=+ .-++...|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~----~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA----PNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBT----TBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCC----CCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4578999999875432 223332 22333778999987432 13577888888643
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=37.09 E-value=3.8 Score=32.42 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=34.4
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh--cCCcccccCCcee
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGSTA 109 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~~y 109 (173)
+.....|.+|..+. + ++ - |.+--+..|..||..-+.. +|...|..|...-
T Consensus 4 d~~~~~C~~C~~~g--------~-ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGG--------D-LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCE--------E-EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC--------c-eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45577899998653 2 32 2 4455588999999765543 5789999998653
No 93
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=35.81 E-value=11 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhh
Q 030666 154 LACMVFAFVISWL 166 (173)
Q Consensus 154 la~mV~afvlpW~ 166 (173)
++.++.+|++.|+
T Consensus 8 l~~vv~~F~icW~ 20 (33)
T 2ki9_A 8 LGLVLAVLLICWF 20 (33)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHh
Confidence 4567788888886
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.63 E-value=5.4 Score=30.38 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH---hcCCcccccCCce
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK---IRGNMTCEICGST 108 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~---~k~~~~CEiC~~~ 108 (173)
+++...| ||....++ ++.++.=-.| -.|.|..|+.-=-. ..+...|+.|...
T Consensus 5 ~~~~~~C-~C~~~~~~-----~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDE-----SKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCT-----TSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCC-----CCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcch
Confidence 3567889 99987542 2345432244 38999999953222 2467899999864
No 95
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.41 E-value=15 Score=17.77 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.1
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2m0f_A 3 LKCRECGKQFTTS 15 (29)
T ss_dssp EECTTTSCEESCH
T ss_pred ccCCCCCCccCCh
Confidence 5799999988643
No 96
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=33.86 E-value=14 Score=17.69 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=10.0
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T 1znf_A 2 YKCGLCERSFVEK 14 (27)
T ss_dssp CBCSSSCCBCSSH
T ss_pred ccCCCCCCcCCCH
Confidence 3699999988743
No 97
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.79 E-value=15 Score=17.83 Aligned_cols=14 Identities=14% Similarity=0.729 Sum_probs=10.8
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (27)
T 2kvh_A 3 PFSCSLCPQRSRDF 16 (27)
T ss_dssp CEECSSSSCEESSH
T ss_pred CccCCCcChhhCCH
Confidence 35799999998743
No 98
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.41 E-value=12 Score=26.41 Aligned_cols=49 Identities=22% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCCCCCceeEeccCCCCCCCCCCCCee--cccccCCCCCccCHHHHHHHHHh--cCCccccc-CCc
Q 030666 47 GDKAERDCRICHLGLEGNSQELMPPIE--LGCSCKGDLGYAHKQCAETWFKI--RGNMTCEI-CGS 107 (173)
Q Consensus 47 ~~~~e~~CRIC~~~~~~~~~e~~~~l~--~pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEi-C~~ 107 (173)
+.++...| ||..... + .++ --|.|.. .|.|..|+- |.. ++...|+. |..
T Consensus 22 ~~~~~~yC-iC~~~~~------g-~MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY------G-PMVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCS------S-SEECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCC------C-CEEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34567889 9987543 2 343 2334542 799999996 332 36789999 874
No 99
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.12 E-value=16 Score=17.67 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=10.2
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 1ard_A 3 FVCEVCTRAFARQ 15 (29)
T ss_dssp CBCTTTCCBCSSH
T ss_pred eECCCCCcccCCH
Confidence 4799999988743
No 100
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=30.94 E-value=13 Score=24.36 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=26.0
Q ss_pred ccceeeecchhHHHHHHHHHHHHHHHhhhccccC
Q 030666 139 ETQNLWHGRRIMNFLLACMVFAFVISWLFHFKVL 172 (173)
Q Consensus 139 ~~~~~w~~~~~lnfLla~mV~afvlpW~f~~~~~ 172 (173)
...++|.-..=-+-|.+-+++++++.-+.||.+.
T Consensus 5 ~~~KIWlvvdP~~~L~~l~~~v~vlAllIH~~lL 38 (56)
T 1lgh_A 5 DDYKIWLVINPSTWLPVIWIVATVVAIAVHAAVL 38 (56)
T ss_dssp GGGGHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCceeHHHHHHHHHHHHHHHHHHHH
Confidence 3567787766667777788888888888898765
No 101
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=30.27 E-value=23 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.584 Sum_probs=27.8
Q ss_pred CCCeecccccCCCCCccCHHH--HHHHHHh---cCCcccccCCceec
Q 030666 69 MPPIELGCSCKGDLGYAHKQC--AETWFKI---RGNMTCEICGSTAD 110 (173)
Q Consensus 69 ~~~l~~pC~CkGsl~~vH~~C--L~~W~~~---k~~~~CEiC~~~y~ 110 (173)
...+..||+ +....|.+| |+.|+.. ++...|++|+..+.
T Consensus 222 ~~ri~~P~R---g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 222 KMRLTIPCR---AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp CSBCSSEEE---ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred cceeccCCc---CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 356778876 245678888 4555553 57899999998875
No 102
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.16 E-value=18 Score=17.49 Aligned_cols=13 Identities=23% Similarity=0.697 Sum_probs=10.3
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (28)
T 2kvf_A 4 YSCSVCGKRFSLK 16 (28)
T ss_dssp EECSSSCCEESCH
T ss_pred ccCCCCCcccCCH
Confidence 5799999988743
No 103
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.11 E-value=18 Score=24.18 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=25.2
Q ss_pred CeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 71 PIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 71 ~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
.|.-| .|||.+.+.= .++...|+-|+..|...-|
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 8 ILVCP-VTKGRLEYHQ---------DKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp CCBCS-SSCCBCEEET---------TTTEEEETTTTEEEEEETT
T ss_pred heECC-CCCCcCeEeC---------CCCEEEcCCCCcEecCCCC
Confidence 45555 6888777642 3477899999999998766
No 104
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.38 E-value=21 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=10.3
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 4799999998754
No 105
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.31 E-value=19 Score=17.64 Aligned_cols=13 Identities=15% Similarity=0.608 Sum_probs=10.3
Q ss_pred CcccccCCceecc
Q 030666 99 NMTCEICGSTADN 111 (173)
Q Consensus 99 ~~~CEiC~~~y~~ 111 (173)
...|++|+..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 3579999998874
No 106
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=28.23 E-value=3.9 Score=26.52 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=28.7
Q ss_pred CCCCceeEeccCCCCCCCCCCCCeec--ccccCCCCCccCHHHHHHHHHh--cCCcccccCCc
Q 030666 49 KAERDCRICHLGLEGNSQELMPPIEL--GCSCKGDLGYAHKQCAETWFKI--RGNMTCEICGS 107 (173)
Q Consensus 49 ~~e~~CRIC~~~~~~~~~e~~~~l~~--pC~CkGsl~~vH~~CL~~W~~~--k~~~~CEiC~~ 107 (173)
.+...| ||..... + .++. .|.|+ ..+.|..|+. +.. +++..|+.|..
T Consensus 8 ~e~~~C-~C~~~~~------g-~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY------G-EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC------S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC------C-CEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 456778 8987532 2 3432 22243 2789999998 443 36788888754
No 107
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.29 E-value=12 Score=17.97 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=10.1
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4799999988743
No 108
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.86 E-value=20 Score=17.26 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=10.8
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 35799999998753
No 109
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=27.29 E-value=27 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=27.9
Q ss_pred CCCeecccccCCCCCccCHHHH--HHHHHh---cCCcccccCCceec
Q 030666 69 MPPIELGCSCKGDLGYAHKQCA--ETWFKI---RGNMTCEICGSTAD 110 (173)
Q Consensus 69 ~~~l~~pC~CkGsl~~vH~~CL--~~W~~~---k~~~~CEiC~~~y~ 110 (173)
...+..||+- ....|.+|. +.|+.. ++...|++|+..+.
T Consensus 256 ~~ri~~PvRg---~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 256 YTRMKYPSKS---INCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SSBCSSEEEE---TTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred cccccccCcC---CcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3567788773 456798884 446653 57899999998864
No 110
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.26 E-value=21 Score=23.89 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh---cCCcccccCCcee
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI---RGNMTCEICGSTA 109 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~---k~~~~CEiC~~~y 109 (173)
+.+...| ||....+. +..++.==.|. .|.|..|+.-=-.. -....|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~-----~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNV-----NHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCS-----SSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCC-----CCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3567788 89887542 23454322443 89999998532221 2568999998654
No 111
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.05 E-value=22 Score=17.14 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.2
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4799999988753
No 112
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.59 E-value=23 Score=18.06 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 7 ~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 7 GYVCALCLKKFVSS 20 (35)
T ss_dssp SEECSSSCCEESSH
T ss_pred CeECCCCcchhCCH
Confidence 46899999998743
No 113
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.14 E-value=16 Score=26.12 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=32.7
Q ss_pred CceeEeccCCCCCCCCCCCCeeccc-ccCCCCCccCHHHHHHH----HH----hcCCcccccCCcee
Q 030666 52 RDCRICHLGLEGNSQELMPPIELGC-SCKGDLGYAHKQCAETW----FK----IRGNMTCEICGSTA 109 (173)
Q Consensus 52 ~~CRIC~~~~~~~~~e~~~~l~~pC-~CkGsl~~vH~~CL~~W----~~----~k~~~~CEiC~~~y 109 (173)
..|.||...... ++.++.=| .|+ .|.|..|+.-= -. .+....|+.|...-
T Consensus 4 ~~C~iC~~p~~~-----~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVND-----DQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCT-----TSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCC-----CCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 579999988543 23466555 675 79999997411 11 12567899998753
No 114
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.96 E-value=24 Score=17.19 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=10.2
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 5799999988743
No 115
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.90 E-value=26 Score=22.28 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHh---cCCcccccCCce
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKI---RGNMTCEICGST 108 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~---k~~~~CEiC~~~ 108 (173)
++++..|.||....++ +..++. | ..=-.|.|..|+.-=... .....|+.|..+
T Consensus 3 ~~e~~~C~~C~~~~~~-----~~~mI~-C--d~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAA-----DEFWIC-C--DLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCS-----SSCEEE-C--SSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCC-----CCCEEE-c--cCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3567889999987642 234443 2 222389999998543221 245778887643
No 116
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.84 E-value=23 Score=16.87 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.1
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|+.|+..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 4799999988744
No 117
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.51 E-value=23 Score=23.77 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=25.5
Q ss_pred CeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 71 PIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 71 ~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
.|..| .|||.+.+.= .++...|+-|+..|...-|
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dG 41 (70)
T 2js4_A 8 ILVCP-VCKGRLEFQR---------AQAELVCNADRLAFPVRDG 41 (70)
T ss_dssp CCBCT-TTCCBEEEET---------TTTEEEETTTTEEEEEETT
T ss_pred heECC-CCCCcCEEeC---------CCCEEEcCCCCceecCCCC
Confidence 45556 7888877642 2577899999999998766
No 118
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.21 E-value=16 Score=17.91 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.3
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 4799999988754
No 119
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.38 E-value=26 Score=18.01 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elt_A 9 PYKCPQCSYASAIK 22 (36)
T ss_dssp SEECSSSSCEESSH
T ss_pred CCCCCCCCcccCCH
Confidence 46899999998743
No 120
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.05 E-value=27 Score=17.92 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.2
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 7 ~~~C~~C~k~f~~~ 20 (35)
T 1srk_A 7 PFVCRICLSAFTTK 20 (35)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeeCCCCCcccCCH
Confidence 46899999998754
No 121
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.71 E-value=26 Score=18.06 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=11.0
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elr_A 9 THLCDMCGKKFKSK 22 (36)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CeecCcCCCCcCch
Confidence 46899999988743
No 122
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=23.23 E-value=30 Score=22.68 Aligned_cols=17 Identities=24% Similarity=0.778 Sum_probs=12.9
Q ss_pred cCCcccccCCceecccc
Q 030666 97 RGNMTCEICGSTADNIA 113 (173)
Q Consensus 97 k~~~~CEiC~~~y~~v~ 113 (173)
+|+..|++|+.+-....
T Consensus 1 ~GsmvC~~C~~ECET~k 17 (57)
T 2k9h_A 1 MGSMVCDVCHHECETAK 17 (57)
T ss_dssp CCTTBCTTTCCBCSSTT
T ss_pred CCcchhhHHHhhhhhHH
Confidence 47889999998865543
No 123
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=22.96 E-value=40 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcC-------CcccccCCceecc
Q 030666 87 KQCAETWFKIRG-------NMTCEICGSTADN 111 (173)
Q Consensus 87 ~~CL~~W~~~k~-------~~~CEiC~~~y~~ 111 (173)
.+++++||+.+| ...|..|+.+-.+
T Consensus 55 ~~yaK~yL~siG~~~~~vT~~eC~FCHsE~A~ 86 (109)
T 2hfq_A 55 IEFAKQWLSSIGEEGATVTSEECRFCHSEKAP 86 (109)
T ss_dssp HHHHHHHHHHHTCCCSCCCTTTBCCCEEEECC
T ss_pred HHHHHHHHHhcCcCCCccchhhCcccccccCC
Confidence 378999999887 4799999988643
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.91 E-value=23 Score=24.41 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=36.0
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH------hcCCcccccCCceec
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK------IRGNMTCEICGSTAD 110 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~------~k~~~~CEiC~~~y~ 110 (173)
...|.+|.....+ .++.|+. |.+=-...|+.|+.-=+. -++...|..|....+
T Consensus 16 ~~~C~vC~~~~~~----~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVA----SGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCC----TTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCC----CCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 6789999987653 1244543 333346789999986543 357899999987655
No 125
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.65 E-value=28 Score=18.01 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2els_A 9 IFTCEYCNKVFKFK 22 (36)
T ss_dssp CEECTTTCCEESSH
T ss_pred CEECCCCCceeCCH
Confidence 46899999998743
No 126
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.44 E-value=43 Score=20.20 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=27.6
Q ss_pred ceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH--hcCCcccccCCc
Q 030666 53 DCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK--IRGNMTCEICGS 107 (173)
Q Consensus 53 ~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~--~k~~~~CEiC~~ 107 (173)
.|.||....+. ++.+. | .+=-+..|..|+.-=+. -++...|..|..
T Consensus 2 ~C~vC~~~~~~-----~~ll~--C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-----DKLIL--C--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-----SCCEE--C--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-----CCEEE--C--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58889877542 22232 2 23347889999953122 135678888864
No 127
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.08 E-value=18 Score=17.60 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=10.3
Q ss_pred cccccCCceeccc
Q 030666 100 MTCEICGSTADNI 112 (173)
Q Consensus 100 ~~CEiC~~~y~~v 112 (173)
..|++|+..|...
T Consensus 4 ~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 4 YVCIHCQRQFADP 16 (30)
Confidence 4799999988754
No 128
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.00 E-value=31 Score=17.85 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.0
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 9 LYDCHICERKFKNE 22 (36)
T ss_dssp CEECSSSCCEESSH
T ss_pred CeECCCCCCccCCH
Confidence 46899999988743
No 129
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.82 E-value=28 Score=18.08 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=10.6
Q ss_pred CcccccCCceecc
Q 030666 99 NMTCEICGSTADN 111 (173)
Q Consensus 99 ~~~CEiC~~~y~~ 111 (173)
...|++|+..|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4689999998874
No 130
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.14 E-value=28 Score=18.07 Aligned_cols=14 Identities=14% Similarity=0.570 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 9 SYSCPVCEKSFSED 22 (37)
T ss_dssp CCEETTTTEECSSH
T ss_pred CcCCCCCCCccCCH
Confidence 46899999998753
No 131
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.12 E-value=34 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 46899999998743
No 132
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.95 E-value=34 Score=17.67 Aligned_cols=14 Identities=14% Similarity=0.567 Sum_probs=11.1
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 9 ~~~C~~C~k~f~~~ 22 (36)
T 2elq_A 9 PFKCSLCEYATRSK 22 (36)
T ss_dssp SEECSSSSCEESCH
T ss_pred CccCCCCCchhCCH
Confidence 46899999998753
No 133
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=20.45 E-value=23 Score=25.65 Aligned_cols=47 Identities=17% Similarity=0.481 Sum_probs=34.3
Q ss_pred CCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccc
Q 030666 51 ERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNI 112 (173)
Q Consensus 51 e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v 112 (173)
.-.|+.|+-... .|+ +|.+ .|.=..||..-++.+. .|+||++.....
T Consensus 28 ~~nCKsCWf~~k--------~LV---~C~d--HYLCl~CLtlmL~~Sd--rCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK--------GLV---ECNN--HYLCLNCLTLLLSVSN--RCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS--------SEE---ECSS--CEEEHHHHHHTCSSSS--EETTTTEECCCC
T ss_pred cccChhhccccC--------Cee---eecc--hhhHHHHHHHHHhhcc--CCcccCCcCCcc
Confidence 568999998654 344 2434 7888889987776655 999999986643
No 134
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.25 E-value=34 Score=18.18 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.2
Q ss_pred CcccccCCceeccc
Q 030666 99 NMTCEICGSTADNI 112 (173)
Q Consensus 99 ~~~CEiC~~~y~~v 112 (173)
...|++|+..|...
T Consensus 6 ~~~C~~C~k~f~~~ 19 (39)
T 1njq_A 6 SYTCSFCKREFRSA 19 (39)
T ss_dssp SEECTTTCCEESSH
T ss_pred ceECCCCCcccCCH
Confidence 45899999998754
No 135
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.14 E-value=31 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.3
Q ss_pred CeecccccCCCCCccCHHHHHHHHHhcCCcccccCCceeccccc
Q 030666 71 PIELGCSCKGDLGYAHKQCAETWFKIRGNMTCEICGSTADNIAG 114 (173)
Q Consensus 71 ~l~~pC~CkGsl~~vH~~CL~~W~~~k~~~~CEiC~~~y~~v~~ 114 (173)
.|..| .|||.+.+.= .++...|+-|+..|...-|
T Consensus 8 iL~CP-~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 8 ILACP-ICKGPLKLSA---------DKTELISKGAGLAYPIRDG 41 (69)
T ss_dssp TCCCT-TTCCCCEECT---------TSSEEEETTTTEEEEEETT
T ss_pred heeCC-CCCCcCeEeC---------CCCEEEcCCCCcEecCcCC
Confidence 44555 7888877632 3577899999999998766
No 136
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.09 E-value=33 Score=22.14 Aligned_cols=48 Identities=27% Similarity=0.516 Sum_probs=30.8
Q ss_pred CCCCCceeEeccCCCCCCCCCCCCeecccccCCCCCccCHHHHHHHHH--hcCCcccccCCc
Q 030666 48 DKAERDCRICHLGLEGNSQELMPPIELGCSCKGDLGYAHKQCAETWFK--IRGNMTCEICGS 107 (173)
Q Consensus 48 ~~~e~~CRIC~~~~~~~~~e~~~~l~~pC~CkGsl~~vH~~CL~~W~~--~k~~~~CEiC~~ 107 (173)
+..+..|.||..+. +.+. |.+=-+..|..||..=+. -++...|..|..
T Consensus 5 ~~~~~~C~vC~~~g--------~ll~----CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDGG--------ELIC----CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCCS--------SCEE----CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCCC--------CEEE----cCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 34678999999752 2232 223346889999974322 246788988864
Done!