Query 030667
Match_columns 173
No_of_seqs 75 out of 77
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3356 Predicted membrane pro 100.0 2.3E-80 5E-85 489.7 9.4 147 26-173 1-147 (147)
2 PF04756 OST3_OST6: OST3 / OST 99.8 2.4E-22 5.2E-27 158.4 -1.2 123 36-163 9-160 (160)
3 KOG2603 Oligosaccharyltransfer 98.0 1.7E-06 3.8E-11 77.7 1.2 109 56-171 210-323 (331)
4 PF09881 DUF2108: Predicted me 52.4 21 0.00045 26.4 3.4 41 113-157 6-46 (72)
5 PF06679 DUF1180: Protein of u 48.9 17 0.00037 30.2 2.7 34 134-168 88-121 (163)
6 PF09971 DUF2206: Predicted me 41.4 9.3 0.0002 34.9 0.2 76 21-97 175-260 (367)
7 KOG0131 Splicing factor 3b, su 38.7 19 0.00041 31.2 1.6 33 76-110 122-165 (203)
8 KOG4581 Predicted membrane pro 25.4 16 0.00035 33.2 -1.0 40 111-159 183-222 (359)
9 COG4039 Predicted membrane pro 23.2 41 0.00088 25.7 0.9 39 114-156 7-45 (86)
10 PF13807 GNVR: G-rich domain o 21.8 1.3E+02 0.0027 21.2 3.2 27 125-151 40-67 (82)
11 PF11711 Tim54: Inner membrane 21.0 67 0.0015 29.9 2.0 34 36-76 6-39 (382)
12 COG3766 Predicted membrane pro 20.1 46 0.001 27.2 0.7 64 105-169 37-102 (133)
No 1
>KOG3356 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.3e-80 Score=489.68 Aligned_cols=147 Identities=57% Similarity=1.079 Sum_probs=145.1
Q ss_pred hhhhcccCcccccCCccccCCCCCCCCChhhHHHHHHHHHHhhhcceeEeeeecCCCCCcccCCCCCceeeeEeeecccC
Q 030667 26 FHILKIFPYSIIRPPRLRLKLPSFTLPSPMTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVN 105 (173)
Q Consensus 26 ~~~l~~~pf~~l~~P~lklk~p~~~~PS~M~v~aLv~vSYFlItgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvN 105 (173)
+|+||.+||++|||||||||+|++++|||||||+||++||||||||+|||+|+|||++||+||| ||||||||||+||||
T Consensus 1 fhil~~vpf~~lr~prlrlk~psf~lps~mtv~alivvsyflv~~g~iydvivepp~igs~~d~-~g~~rpv~fla~rvn 79 (147)
T KOG3356|consen 1 FHILRIVPFSFLRPPRLRLKLPSFTLPSPMTVYALIVVSYFLVTGGIIYDVIVEPPSIGSMTDE-HGHQRPVAFLAGRVN 79 (147)
T ss_pred CceEEEeceeeecCcceeccCCCccCCCchHHHHHHHHHHHHhcccEEEEEEecCCCCCccccc-CCcCcceEEEecccc
Confidence 4788889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhhHHHHHHHHHhccceeeEeecccCcCccchhhhhhhhcchHHHHHHHHHHHHHHHhccCCCCC
Q 030667 106 GQYIIEGLSSGFMFVLGGMGFVLLDLALDKNRAKSVKVSYASAGISSIVIAYIMSMLFIRIKIPGYLR 173 (173)
Q Consensus 106 GQYI~EGLassFlFtmGglGfIiLD~s~~~n~pk~~r~l~~~~G~~~vl~sf~ma~vF~RmKlPgYl~ 173 (173)
||||||||+||||||+||+|||+||++|+||+||+||++++++|++|+++||+|||+||||||||||+
T Consensus 80 gqyimeglas~flf~lgglg~imld~a~~~n~~k~~r~~~~~~g~~~vlls~~ma~vfmrmklpgyl~ 147 (147)
T KOG3356|consen 80 GQYIMEGLASSFLFTLGGLGFIMLDRANAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLPGYLM 147 (147)
T ss_pred ceeeehhhcccceEeecCcEEEEEecccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 2
>PF04756 OST3_OST6: OST3 / OST6 family; InterPro: IPR021149 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex.; PDB: 3G7Y_A 3G9B_A 3GA4_A.
Probab=99.83 E-value=2.4e-22 Score=158.42 Aligned_cols=123 Identities=28% Similarity=0.589 Sum_probs=4.5
Q ss_pred cccCCccccCCCC-CCCCChhhHHHHHHHH--------------------------HHhhhcceeEeeeecCCCCCcccC
Q 030667 36 IIRPPRLRLKLPS-FTLPSPMTVFALVLLT--------------------------YFMVVSGFVYDVIVEPPGIGSTQD 88 (173)
Q Consensus 36 ~l~~P~lklk~p~-~~~PS~M~v~aLv~vS--------------------------YFlItgGiIYdvI~ePP~iGs~~D 88 (173)
..++|+.|+++|+ ...|+.++++.+++++ |++.++|..||.|++||.+|...|
T Consensus 9 ~t~i~~~~i~~P~~~~~~~~~i~~~i~~~~~~~~~k~~~~~~~~~r~lw~~~sl~~~~~~~SG~mfn~Ir~~P~~~~~~~ 88 (160)
T PF04756_consen 9 RTGIPIFKIYRPPNYSKPSIFITFFIVFVAVFLYIKRSILPFLRSRFLWAVLSLIIILLSTSGYMFNIIRGPPFIGRDPD 88 (160)
T ss_dssp HHHHHT-------S------------------------------------------------------------------
T ss_pred HcCCCeeEEeCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC
Confidence 5678889999999 8999888888888888 999999999999999999866555
Q ss_pred CCCCceeeeEeeecccChhhhhhHHHHHHHHHhccceeeEeeccc--CcCccchhhhhhhhcchHHHHHHHHHHHHH
Q 030667 89 PATGSVRPVVFLPGRVNGQYIIEGLSSGFMFVLGGMGFVLLDLAL--DKNRAKSVKVSYASAGISSIVIAYIMSMLF 163 (173)
Q Consensus 89 e~~G~~rPVaFm~~RvNGQYI~EGLassFlFtmGglGfIiLD~s~--~~n~pk~~r~l~~~~G~~~vl~sf~ma~vF 163 (173)
+ ++++.|++++.|+||++||++.|+++++.|+|+|+|+... .++.+|.+|..++. |+++++++|+++++|
T Consensus 89 g----~~~i~f~~g~~~~QfgiE~~iv~~ly~~la~~~i~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~f 160 (160)
T PF04756_consen 89 G----SRPIYFFSGGSQGQFGIEGQIVSFLYGVLALGFILLIYAAPKKKNSPKQRRILLIS-GLALVIYSFFSYIVF 160 (160)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred C----CCceEEecCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhccccCCcchhhhhHHHH-HHHHHHHHHHHHhhC
Confidence 4 7899999999999999999999999999999999998866 45677777877654 999999999998887
No 3
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.7e-06 Score=77.71 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=79.7
Q ss_pred hHHHHHHH-HHHhhhcceeEeeeecCCCCCcccCCCCCceeeeEeeecccChhhhhhHHHHHHHHHhccceeeEeecccC
Q 030667 56 TVFALVLL-TYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYIIEGLSSGFMFVLGGMGFVLLDLALD 134 (173)
Q Consensus 56 ~v~aLv~v-SYFlItgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvNGQYI~EGLassFlFtmGglGfIiLD~s~~ 134 (173)
++.+.+.+ -||..++|.-++.|++||-+ .+|| + ..-+.|..+.-..|+++|+.+-|+|++.=++|+++|+.+..
T Consensus 210 ~~w~~lsl~i~f~~iSG~M~n~IR~~P~~--~~dp-~--~~~~~f~~g~Sq~Qf~aEtfiV~lly~~v~ll~vll~~~~~ 284 (331)
T KOG2603|consen 210 TIWAVLSLFIVFFMISGQMWNHIRGPPYA--IKDP-H--TGKVVFIHGSSQAQFGAETFIVGLLYGVVSLLMVLLTEAAT 284 (331)
T ss_pred HHHHHHHHhheeeeechhHHHHhcCCcce--eeCC-C--CCeEEEEeCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 78888999999999999995 6777 3 33456999899999999999999999999999999876443
Q ss_pred cC--cc--chhhhhhhhcchHHHHHHHHHHHHHHHhccCCC
Q 030667 135 KN--RA--KSVKVSYASAGISSIVIAYIMSMLFIRIKIPGY 171 (173)
Q Consensus 135 ~n--~p--k~~r~l~~~~G~~~vl~sf~ma~vF~RmKlPgY 171 (173)
.. .- |.+-.+.++++++++..|+.. =-.|+|=|||
T Consensus 285 ~~~~~~~~k~~~l~~~~i~~~~vFfs~~l--s~f~~ky~gY 323 (331)
T KOG2603|consen 285 SSKSIDYQKRKMLLIAGLSCVAVFFSVLL--SVFRIKYPGY 323 (331)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHhh--hhhhcCCCCC
Confidence 32 22 444444445555555555555 3468889988
No 4
>PF09881 DUF2108: Predicted membrane protein (DUF2108); InterPro: IPR019213 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=52.43 E-value=21 Score=26.42 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=31.7
Q ss_pred HHHHHHHHhccceeeEeecccCcCccchhhhhhhhcchHHHHHHH
Q 030667 113 LSSGFMFVLGGMGFVLLDLALDKNRAKSVKVSYASAGISSIVIAY 157 (173)
Q Consensus 113 LassFlFtmGglGfIiLD~s~~~n~pk~~r~l~~~~G~~~vl~sf 157 (173)
+.+.++..+||+|-|+..+.-+ |+--+.++..|+...+.++
T Consensus 6 li~~~~~iiG~ig~i~~~~p~~----KlIm~~ll~~G~i~~Iva~ 46 (72)
T PF09881_consen 6 LISAACAIIGAIGAILHRDPID----KLIMFALLEAGIIGFIVAF 46 (72)
T ss_pred HHHHHHHHHhhheeeeecCchH----HHHHHHHHHccHHHHHHHh
Confidence 6789999999999998743332 7777888889998776654
No 5
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=48.89 E-value=17 Score=30.16 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=27.2
Q ss_pred CcCccchhhhhhhhcchHHHHHHHHHHHHHHHhcc
Q 030667 134 DKNRAKSVKVSYASAGISSIVIAYIMSMLFIRIKI 168 (173)
Q Consensus 134 ~~n~pk~~r~l~~~~G~~~vl~sf~ma~vF~RmKl 168 (173)
.+|.+-+.|.+|.+.|+.+.++.||+.|+| |+|-
T Consensus 88 ~~d~~~l~R~~~Vl~g~s~l~i~yfvir~~-R~r~ 121 (163)
T PF06679_consen 88 SPDSPMLKRALYVLVGLSALAILYFVIRTF-RLRR 121 (163)
T ss_pred cCCccchhhhHHHHHHHHHHHHHHHHHHHH-hhcc
Confidence 356677899999999999999999997755 5443
No 6
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=41.37 E-value=9.3 Score=34.86 Aligned_cols=76 Identities=20% Similarity=0.394 Sum_probs=49.9
Q ss_pred Cchhhhhhhc--ccCcccc-------cCCccccCCCCCCCCChhhHHHHHHHHHHhhhcceeEeeeecCCCCCcccCC-C
Q 030667 21 SIDPLFHILK--IFPYSII-------RPPRLRLKLPSFTLPSPMTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDP-A 90 (173)
Q Consensus 21 ~m~~l~~~l~--~~pf~~l-------~~P~lklk~p~~~~PS~M~v~aLv~vSYFlItgGiIYdvI~ePP~iGs~~De-~ 90 (173)
+++-|||+.- ..||.+. .+++++-+..+.......-++++.++-+||...|.+|.+..|+|.- ..-|. .
T Consensus 175 n~~RLy~itli~LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i~~i~~d~p~s-~~L~~~~ 253 (367)
T PF09971_consen 175 NPTRLYQITLIFLAPFFIIGGITLFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFIYEIFGDPPTS-ISLDKNS 253 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHHHHHhcCCCCc-eeeccCc
Confidence 4566776532 2466665 5666666555445566677888889999999999999999886663 33333 1
Q ss_pred CCceeee
Q 030667 91 TGSVRPV 97 (173)
Q Consensus 91 ~G~~rPV 97 (173)
.-+.+|+
T Consensus 254 ~~~~~~~ 260 (367)
T PF09971_consen 254 DKNSYPY 260 (367)
T ss_pred cccccee
Confidence 2123776
No 7
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=38.74 E-value=19 Score=31.23 Aligned_cols=33 Identities=39% Similarity=0.759 Sum_probs=25.6
Q ss_pred eeecCCCCCcccCCCCCceeeeEeeecc-----------cChhhhh
Q 030667 76 VIVEPPGIGSTQDPATGSVRPVVFLPGR-----------VNGQYII 110 (173)
Q Consensus 76 vI~ePP~iGs~~De~~G~~rPVaFm~~R-----------vNGQYI~ 110 (173)
++..||.| ++|+.+|+.++-+|.-|+ +||||+.
T Consensus 122 ~l~~~P~i--~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 122 VLISPPKI--MRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred ccccCCcc--cccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 34588885 888878999999988775 6777764
No 8
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=25.35 E-value=16 Score=33.19 Aligned_cols=40 Identities=28% Similarity=0.590 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhccceeeEeecccCcCccchhhhhhhhcchHHHHHHHHH
Q 030667 111 EGLSSGFMFVLGGMGFVLLDLALDKNRAKSVKVSYASAGISSIVIAYIM 159 (173)
Q Consensus 111 EGLassFlFtmGglGfIiLD~s~~~n~pk~~r~l~~~~G~~~vl~sf~m 159 (173)
-||++||++| ||+||=-+-.-+ -..++.+|=.+|+++|..
T Consensus 183 ggls~sflyt-ggigfkyialgd--------liili~fgpiavlfaf~~ 222 (359)
T KOG4581|consen 183 GGLSGSFLYT-GGIGFKYIALGD--------LIILILFGPIAVLFAFAI 222 (359)
T ss_pred cCcccceeEe-cccceEEEeccC--------EEEEEeechHHHHHHHHH
Confidence 4788999998 788884432211 123345787878877754
No 9
>COG4039 Predicted membrane protein [Function unknown]
Probab=23.15 E-value=41 Score=25.67 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=26.8
Q ss_pred HHHHHHHhccceeeEeecccCcCccchhhhhhhhcchHHHHHH
Q 030667 114 SSGFMFVLGGMGFVLLDLALDKNRAKSVKVSYASAGISSIVIA 156 (173)
Q Consensus 114 assFlFtmGglGfIiLD~s~~~n~pk~~r~l~~~~G~~~vl~s 156 (173)
.|+.--.+||.|.|+..+-.+ |+--+.++=+|++|++.+
T Consensus 7 ~s~t~cilG~ig~iL~~~Pl~----Kiim~aLl~~Gmi~~iaa 45 (86)
T COG4039 7 TSGTACILGGIGTILHRDPLN----KIIMIALLEIGMICAIAA 45 (86)
T ss_pred ccceeeeecceeEEEecCcHH----HHHHHHHHhcchhhhhhh
Confidence 445566789999998743333 555566777899887753
No 10
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.78 E-value=1.3e+02 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=15.5
Q ss_pred eeeEeecccCcCcc-chhhhhhhhcchH
Q 030667 125 GFVLLDLALDKNRA-KSVKVSYASAGIS 151 (173)
Q Consensus 125 GfIiLD~s~~~n~p-k~~r~l~~~~G~~ 151 (173)
.+-++|.+..|+.| +-+|.+.+.+|++
T Consensus 40 ~~~ivd~A~~P~~P~~P~~~lil~l~~~ 67 (82)
T PF13807_consen 40 NVRIVDPAIVPDKPVSPKRALILALGLF 67 (82)
T ss_pred CceeccccccCCCCCCCcHHHHHHHHHH
Confidence 45678998877644 3344444444443
No 11
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=20.97 E-value=67 Score=29.91 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=22.2
Q ss_pred cccCCccccCCCCCCCCChhhHHHHHHHHHHhhhcceeEee
Q 030667 36 IIRPPRLRLKLPSFTLPSPMTVFALVLLTYFMVVSGFVYDV 76 (173)
Q Consensus 36 ~l~~P~lklk~p~~~~PS~M~v~aLv~vSYFlItgGiIYdv 76 (173)
.+--|++|.|+||=.+ .+|--|+-| ++||++||-
T Consensus 6 ~mGiP~~~~kLPSRNW----mIF~tV~~s---~~~~i~YDr 39 (382)
T PF11711_consen 6 MMGIPNIRPKLPSRNW----MIFWTVTGS---ITGAIIYDR 39 (382)
T ss_pred hcCCCcccccCCCCCe----eehhhHhhh---hhheeEecH
Confidence 4456888888888332 344444444 589999993
No 12
>COG3766 Predicted membrane protein [Function unknown]
Probab=20.08 E-value=46 Score=27.21 Aligned_cols=64 Identities=13% Similarity=0.325 Sum_probs=46.0
Q ss_pred ChhhhhhHHHHHHHHHhccc-eeeE-eecccCcCccchhhhhhhhcchHHHHHHHHHHHHHHHhccC
Q 030667 105 NGQYIIEGLSSGFMFVLGGM-GFVL-LDLALDKNRAKSVKVSYASAGISSIVIAYIMSMLFIRIKIP 169 (173)
Q Consensus 105 NGQYI~EGLassFlFtmGgl-GfIi-LD~s~~~n~pk~~r~l~~~~G~~~vl~sf~ma~vF~RmKlP 169 (173)
|.|-|=||=.+..|=+-|.+ |+.+ +--+....+.-..-.....+|++.-+++|++.+..|. |++
T Consensus 37 e~elIk~GN~AaAlA~~G~llG~~~plassi~~s~sl~~~~~Wg~~~~vvqLl~f~i~~~l~p-~l~ 102 (133)
T COG3766 37 EWELIKEGNTAAALALGGALLGYVIPLASSISHSVSLPDYLAWGAIALVVQLLVFFIVRLLMP-DLD 102 (133)
T ss_pred HHHHHHccCHHHHHHhcchHHhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHcC-ccH
Confidence 57888999999998888876 8877 3333333334444455668999988899999888776 554
Done!