Query 030667
Match_columns 173
No_of_seqs 75 out of 77
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_Z Photosystem II reaction 14.4 88 0.003 21.5 1.9 17 55-71 7-23 (62)
2 3arc_E Cytochrome B559 subunit 10.3 87 0.003 22.8 0.9 48 55-106 24-71 (83)
3 4fc4_A Nitrite transporter NIR 7.9 1.1E+02 0.0039 25.4 0.8 53 103-155 22-74 (261)
4 4g6v_A Adhesin/hemolysin; tRNA 7.8 1.5E+02 0.0052 24.1 1.5 29 69-109 73-101 (176)
5 2kih_A Matrix protein 2; S31N, 7.0 2E+02 0.0069 18.5 1.5 32 132-166 2-33 (43)
6 3kcu_A Probable formate transp 5.9 1.7E+02 0.006 24.5 1.0 28 103-130 29-56 (285)
7 1rh5_B Preprotein translocase 4.8 87 0.003 21.9 -1.3 11 118-128 45-55 (74)
8 2ost_A Putative endonuclease; 4.7 1.8E+02 0.0062 23.0 0.3 23 91-114 122-144 (151)
9 4dvc_A Thiol:disulfide interch 4.7 1.2E+02 0.0042 21.3 -0.6 8 104-111 156-163 (184)
10 4a4y_A Protein MXIG; protein b 4.6 4.1E+02 0.014 20.4 2.2 51 69-136 83-133 (146)
No 1
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=14.42 E-value=88 Score=21.49 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhhhcc
Q 030667 55 MTVFALVLLTYFMVVSG 71 (173)
Q Consensus 55 M~v~aLv~vSYFlItgG 71 (173)
..+++||..|+.++.|=
T Consensus 7 l~v~aLi~~Sf~LVVgV 23 (62)
T 3arc_Z 7 LALAALVILSFVMVIGV 23 (62)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhee
Confidence 46899999999998763
No 2
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=10.26 E-value=87 Score=22.78 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhhhcceeEeeeecCCCCCcccCCCCCceeeeEeeecccCh
Q 030667 55 MTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNG 106 (173)
Q Consensus 55 M~v~aLv~vSYFlItgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvNG 106 (173)
.|+=+|.+.-+.+|..|..||+-..|-.-.+-+.+ + .+-|+ ..-|-|.
T Consensus 24 ITIPslFiaGwLFVstGLaYdvFGtPrpneYft~~-r-q~~pl--v~dRf~~ 71 (83)
T 3arc_E 24 ITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQE-Q-RSIPL--VTDRFEA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHTCCCTTSSSCTT-C-CSCCC--CCCSTTH
T ss_pred eccchHHHhhhhhhccCcceeccCCCCcccccccc-c-ccCcc--eecccCH
Confidence 55557777788889999999999888775555554 3 56665 3445555
No 3
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=7.91 E-value=1.1e+02 Score=25.37 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=30.9
Q ss_pred ccChhhhhhHHHHHHHHHhccceeeEeecccCcCccchhhhhhhhcchHHHHH
Q 030667 103 RVNGQYIIEGLSSGFMFVLGGMGFVLLDLALDKNRAKSVKVSYASAGISSIVI 155 (173)
Q Consensus 103 RvNGQYI~EGLassFlFtmGglGfIiLD~s~~~n~pk~~r~l~~~~G~~~vl~ 155 (173)
|-..+|.+-|+.+|....+|++-...+....++...++.-.+.-.+|++.|++
T Consensus 22 ~~~~~~~~~~~~AG~~I~~g~~~~~~~~~~~~~~~~~ll~g~~F~vGl~lVvl 74 (261)
T 4fc4_A 22 NNPLGFWVSSAMAGAYVGLGIILIFTLGNLLDPSVRPLVMGATFGIALTLVII 74 (261)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999876554432222322233222222455555443
No 4
>4g6v_A Adhesin/hemolysin; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=7.81 E-value=1.5e+02 Score=24.14 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=20.1
Q ss_pred hcceeEeeeecCCCCCcccCCCCCceeeeEeeecccChhhh
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYI 109 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvNGQYI 109 (173)
..-.=||+.+-|.. +...|| + ||+|||+.
T Consensus 73 LA~~GYdVEqlP~~-~~~knP-D----------y~ING~vf 101 (176)
T 4g6v_A 73 LANKGYDVVQNPEV-LGPKNP-D----------YTINGQVF 101 (176)
T ss_dssp HHTTTCEEEESCCC-SSSCCC-S----------EEETTEEE
T ss_pred HHhcCcceeeCCcc-CCCCCC-C----------ceECCEEE
Confidence 34556999988886 667777 3 56777654
No 5
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=6.97 E-value=2e+02 Score=18.47 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=19.7
Q ss_pred ccCcCccchhhhhhhhcchHHHHHHHHHHHHHHHh
Q 030667 132 ALDKNRAKSVKVSYASAGISSIVIAYIMSMLFIRI 166 (173)
Q Consensus 132 s~~~n~pk~~r~l~~~~G~~~vl~sf~ma~vF~Rm 166 (173)
.|+.++|-...+. .+|+.-..+|.+= |+|+++
T Consensus 2 c~dssdplv~aa~--iiGIlHLiLwild-Rlffkc 33 (43)
T 2kih_A 2 SNDSSDPLVVAAN--IIGILHLILWILD-RLFFKS 33 (43)
T ss_dssp ----CCHHHHHHH--HHHHHHHHHHHHH-HHHCCC
T ss_pred CCCCCCcHHHHHH--HHHHHHHHHHHHH-HHHHHH
Confidence 4566777777777 6888866656554 888764
No 6
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=5.91 E-value=1.7e+02 Score=24.50 Aligned_cols=28 Identities=4% Similarity=0.084 Sum_probs=23.2
Q ss_pred ccChhhhhhHHHHHHHHHhccceeeEee
Q 030667 103 RVNGQYIIEGLSSGFMFVLGGMGFVLLD 130 (173)
Q Consensus 103 RvNGQYI~EGLassFlFtmGglGfIiLD 130 (173)
|--.+|.+-|+.+|....+|++-.+.+.
T Consensus 29 ~~~~~~~~~~ilAG~~I~~g~~~~~~v~ 56 (285)
T 3kcu_A 29 KHPLKTFYLAITAGVFISIAFVFYITAT 56 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999988666553
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=4.85 E-value=87 Score=21.91 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=7.6
Q ss_pred HHHhccceeeE
Q 030667 118 MFVLGGMGFVL 128 (173)
Q Consensus 118 lFtmGglGfIi 128 (173)
++.||.+||++
T Consensus 45 ~~imG~IGfiI 55 (74)
T 1rh5_B 45 ISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45677778765
No 8
>2ost_A Putative endonuclease; protein-DNA complex, restriction enzyme fold,PD-(D/E)-XK MOT homing endonuclease, group I intron, hydrolase-DNA complex; 3.10A {Synechocystis SP}
Probab=4.75 E-value=1.8e+02 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=17.2
Q ss_pred CCceeeeEeeecccChhhhhhHHH
Q 030667 91 TGSVRPVVFLPGRVNGQYIIEGLS 114 (173)
Q Consensus 91 ~G~~rPVaFm~~RvNGQYI~EGLa 114 (173)
+.+.+|+-| .||-|+|-|+|-=+
T Consensus 122 ~~q~k~~~~-~yre~~~~~~~~~~ 144 (151)
T 2ost_A 122 KRQRKPRSF-GYREAWHLILQKGA 144 (151)
T ss_dssp SCSSCCTTG-GGBTCTHHHHHHHH
T ss_pred cchhcchhh-hHHHHHHHHHhhcc
Confidence 445677766 99999999988543
No 9
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=4.72 E-value=1.2e+02 Score=21.28 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=5.2
Q ss_pred cChhhhhh
Q 030667 104 VNGQYIIE 111 (173)
Q Consensus 104 vNGQYI~E 111 (173)
|||+|++.
T Consensus 156 INGky~v~ 163 (184)
T 4dvc_A 156 VNNRYLVQ 163 (184)
T ss_dssp ETTTEEEC
T ss_pred ECCEEeeC
Confidence 57777653
No 10
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=4.57 E-value=4.1e+02 Score=20.39 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=33.2
Q ss_pred hcceeEeeeecCCCCCcccCCCCCceeeeEeeecccChhhhhhHHHHHHHHHhccceeeEeecccCcC
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYIIEGLSSGFMFVLGGMGFVLLDLALDKN 136 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvNGQYI~EGLassFlFtmGglGfIiLD~s~~~n 136 (173)
.-||||-.| .---|++..|| .|+|- .+|.||- | |---|+.|-+-+...++.
T Consensus 83 sdgiiylti-skdnicqfsde-kgeqi-------dinsqfn------s--feydgisfhlknmredks 133 (146)
T 4a4y_A 83 SDGIIYLTI-SKDNICQFSDE-KGEQI-------DINSQFN------S--FEYDGISFHLKNMREDKS 133 (146)
T ss_dssp SCEEEEEEE-CTTCCEEEECT-TSCEE-------CCCSSSS------E--EEETTEEEEEEECCCCCS
T ss_pred CCcEEEEEE-ecCcceecccc-cCcEe-------ecccccc------c--eeecceEeehhccccccc
Confidence 369999888 45567899999 88874 5677763 1 333456665544444443
Done!