Query 030667
Match_columns 173
No_of_seqs 75 out of 77
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 03:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ak2a2 g.41.2.1 (A:147-176) M 31.9 10 0.00074 21.3 1.6 24 69-93 2-25 (30)
2 d2o8ra1 a.7.15.1 (A:4-112) Pol 23.2 12 0.00087 25.1 0.9 32 129-162 20-52 (109)
3 d2axtz1 f.17.5.1 (Z:1-62) Phot 23.2 20 0.0014 23.2 1.9 16 55-70 7-22 (62)
4 d1xdpa1 a.7.15.1 (A:2-106) Pol 20.4 14 0.0011 24.9 0.9 33 128-162 20-53 (105)
5 d1e4va2 g.41.2.1 (A:122-156) M 18.2 32 0.0023 19.4 2.0 24 69-93 7-30 (35)
6 d2ak3a2 g.41.2.1 (A:125-161) M 14.8 43 0.0032 19.1 2.0 24 69-93 7-30 (37)
7 d1s3ga2 g.41.2.1 (A:126-160) M 12.9 42 0.0031 18.9 1.5 23 70-93 8-30 (35)
8 d1zina2 g.41.2.1 (A:126-160) M 12.5 48 0.0035 18.7 1.7 23 70-93 8-30 (35)
9 d1akya2 g.41.2.1 (A:131-168) M 9.7 64 0.0047 18.4 1.6 24 69-93 7-30 (38)
10 d2axte1 f.23.38.1 (E:3-84) Cyt 9.6 45 0.0033 22.5 0.9 54 55-112 23-76 (82)
No 1
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=31.95 E-value=10 Score=21.28 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.5
Q ss_pred hcceeEeeeecCCCCCcccCCCCCc
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
.+|-+|.+...||.....-|. .|.
T Consensus 2 ~sG~~Yhv~f~PPk~~g~cD~-cg~ 25 (30)
T d1ak2a2 2 QSGRSYHEEFNPPKEPMKDDI-TGE 25 (30)
T ss_dssp TTCCEEBTTTBCCSSTTBCTT-TCC
T ss_pred CCCCCccccccCCCCCCccCC-CCC
Confidence 368999999999999888888 664
No 2
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=23.24 E-value=12 Score=25.10 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.5
Q ss_pred eecccCcCccchhhhhhhhcchHHHHH-HHHHHHH
Q 030667 129 LDLALDKNRAKSVKVSYASAGISSIVI-AYIMSML 162 (173)
Q Consensus 129 LD~s~~~n~pk~~r~l~~~~G~~~vl~-sf~ma~v 162 (173)
|+.+.+++.|-+-|.-| +|++|-=+ =|||.||
T Consensus 20 L~~a~d~~~PllER~~F--l~I~ssNLDEFFmVRV 52 (109)
T d2o8ra1 20 LMEAADRTLPVYDRIKF--LSIFSSNLEEFYTVRV 52 (109)
T ss_dssp HHHHHCTTSCHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHH--HHHHHhhHHHHHHHHH
Confidence 67889999999999995 56554433 5888776
No 3
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.22 E-value=20 Score=23.25 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHhhhc
Q 030667 55 MTVFALVLLTYFMVVS 70 (173)
Q Consensus 55 M~v~aLv~vSYFlItg 70 (173)
.+++|||..||.++.|
T Consensus 7 l~v~ALi~~SF~lVVg 22 (62)
T d2axtz1 7 LALAALVILSFVMVIG 22 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhee
Confidence 4689999999999876
No 4
>d1xdpa1 a.7.15.1 (A:2-106) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=20.42 E-value=14 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=24.0
Q ss_pred EeecccCcCccchhhhhhhhcchHHHHH-HHHHHHH
Q 030667 128 LLDLALDKNRAKSVKVSYASAGISSIVI-AYIMSML 162 (173)
Q Consensus 128 iLD~s~~~n~pk~~r~l~~~~G~~~vl~-sf~ma~v 162 (173)
+|+.+.+++.|-+-|.-| +|+++-=+ =|||.||
T Consensus 20 VL~~a~~~~~PllERlrF--l~I~ssNLDEFFmVRV 53 (105)
T d1xdpa1 20 VLQEAADKSNPLIERMRF--LGIYSNNLDEFYKVRF 53 (105)
T ss_dssp HHHHHHCTTSCHHHHHHH--HHHHHHHHHHHHHTHH
T ss_pred HHHHHcCCCCCHHHHHHH--HHHHHhhHHHHHHhhH
Confidence 367889999999999995 45554333 5777665
No 5
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=18.20 E-value=32 Score=19.43 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=19.8
Q ss_pred hcceeEeeeecCCCCCcccCCCCCc
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
..|-+|.+...||..-..=|. .|.
T Consensus 7 ~cG~~Yh~~~~PPk~~g~CD~-cg~ 30 (35)
T d1e4va2 7 PSGRVYHVKFNPPKVEGKDDV-TGE 30 (35)
T ss_dssp TTTEEEETTTBCCSSTTBCTT-TCC
T ss_pred CcCChhhhccCccccCCcccC-CCC
Confidence 358899999999999887777 654
No 6
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=14.77 E-value=43 Score=19.13 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.2
Q ss_pred hcceeEeeeecCCCCCcccCCCCCc
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
..|-+|.+...||-.-..=|. .|.
T Consensus 7 ~cG~~Yh~~~~pPk~~g~CD~-cg~ 30 (37)
T d2ak3a2 7 GSGRVYNIEFNPPKTMGIDDL-TGE 30 (37)
T ss_dssp TTTEEEETTTBCCSSTTBCTT-TCC
T ss_pred CcCChhhhccCCccccCCccC-CCC
Confidence 468999999999999888887 654
No 7
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=12.88 E-value=42 Score=18.90 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=19.3
Q ss_pred cceeEeeeecCCCCCcccCCCCCc
Q 030667 70 SGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 70 gGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
.|-+|++...||.....=|. .|.
T Consensus 8 CG~~Yh~~~~pPk~~g~CD~-cg~ 30 (35)
T d1s3ga2 8 CGTSYHLLFNPPQVEGKCDK-DGG 30 (35)
T ss_dssp TCCEEETTTBCCSBTTBCTT-TCC
T ss_pred cCchhccccCCCCCCCccCC-CCC
Confidence 58899999999999888887 653
No 8
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.51 E-value=48 Score=18.65 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.4
Q ss_pred cceeEeeeecCCCCCcccCCCCCc
Q 030667 70 SGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 70 gGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
.|-+|.+...||..-..=|. .|.
T Consensus 8 CG~~Yh~~~~pPk~~g~CD~-cG~ 30 (35)
T d1zina2 8 CGATYHLIFHPPAKPGVCDK-CGG 30 (35)
T ss_dssp TCCEEETTTBCCSSTTBCTT-TCC
T ss_pred cCchhccccCCCCCCCcCCC-CCC
Confidence 58899999999999888887 654
No 9
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.71 E-value=64 Score=18.41 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=19.2
Q ss_pred hcceeEeeeecCCCCCcccCCCCCc
Q 030667 69 VSGFVYDVIVEPPGIGSTQDPATGS 93 (173)
Q Consensus 69 tgGiIYdvI~ePP~iGs~~De~~G~ 93 (173)
..|-+|.+...||..-..=|. .|.
T Consensus 7 ~cG~~Yh~~~~ppk~~g~CD~-cg~ 30 (38)
T d1akya2 7 ASGRSYHKIFNPPKEDMKDDV-TGE 30 (38)
T ss_dssp TTCCEEETTTBCCSSTTBCTT-TCC
T ss_pred CccchhhhhccCcCcCCccCC-CCC
Confidence 358899999999998777776 653
No 10
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.64 E-value=45 Score=22.49 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhhhcceeEeeeecCCCCCcccCCCCCceeeeEeeecccChhhhhhH
Q 030667 55 MTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYIIEG 112 (173)
Q Consensus 55 M~v~aLv~vSYFlItgGiIYdvI~ePP~iGs~~De~~G~~rPVaFm~~RvNGQYI~EG 112 (173)
.|+=+|.+.-+.+|..|..||+-..|-.-.+-+.+ + .+-|+ ...|-|..==+|-
T Consensus 23 iTIPslFiaGwlFVstGLAYdvFGtPrPneYft~~-r-q~~pl--i~~Rf~~~~ql~~ 76 (82)
T d2axte1 23 ITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQE-Q-RSIPL--VTDRFEAKQQVET 76 (82)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTCCCTTCSSCSS-C-CSCCC--CCCSSSHHHHHHH
T ss_pred ecccHHHHhhhhheecccchhhcCCCCcccccccc-c-ccCcc--cccccCHHHHHHH
Confidence 45557777888899999999999888775555544 3 55565 3445554333333
Done!