BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030668
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 40  DILQSYNFPAGLLPKGITQYDIDRETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISEN 99
           ++L+ Y+ P G+ P   T Y+ D ET +    +   C    + S  LK+ + ++G++ + 
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 100 KLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGIASA 137
           KLT + G+  KV+ +W+ +  ++ +   + F+ G+  +
Sbjct: 116 KLTDVEGIKTKVM-IWVKVTSISTDASKVYFTAGMKKS 152


>pdb|3H5Q|A Chain A, Crystal Structure Of A Putative Pyrimidine-Nucleoside
           Phosphorylase From Staphylococcus Aureus
          Length = 436

 Score = 32.7 bits (73), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 81  EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
           +  YQ++YK+K SGY++E     L    + V    L    +T+  DDID +VGI
Sbjct: 334 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASXXLGAGRLTKE-DDIDLAVGI 381


>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
          Length = 479

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 25 ATSSLSANSDQL--SAYDILQSYNFPAGLLPKGITQYDIDRETGQF---HAYLDGTCSFS 79
          A  +LSAN+     S YD L+ ++   GL   G T Y ID+   Q    +   +GT  F 
Sbjct: 12 AQHALSANTSSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAAAQITRENVSWNGTNVFG 71

Query: 80 LEGSYQLKYKSKIS 93
             +   K+   +S
Sbjct: 72 KSANLTFKFLQSVS 85


>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
          Length = 479

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 25 ATSSLSANSDQL--SAYDILQSYNFPAGLLPKGITQYDIDRETGQF---HAYLDGTCSFS 79
          A  +LSAN+     S YD L+ ++   GL   G T Y ID+   Q    +   +GT  F 
Sbjct: 12 AQHALSANTSSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAAAQITRENVSWNGTNVFG 71

Query: 80 LEGSYQLKYKSKIS 93
             +   K+   +S
Sbjct: 72 KSANLTFKFLQSVS 85


>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
          Length = 479

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 25 ATSSLSANSDQL--SAYDILQSYNFPAGLLPKGITQYDIDRETGQF---HAYLDGTCSFS 79
          A  +LSAN+     S YD L+ ++   GL   G T Y ID+   Q    +   +GT  F 
Sbjct: 12 AQHALSANTSSAYNSVYDFLRYHDRGDGLTVNGKTSYSIDQAAAQITRENVSWNGTNVFG 71

Query: 80 LEGSYQLKYKSKIS 93
             +   K+   +S
Sbjct: 72 KSANLTFKFLQSVS 85


>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
           Anaeromyxobacter Dehalogenans.
 pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
           Anaeromyxobacter Dehalogenans
          Length = 257

 Score = 26.6 bits (57), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 110 KVLFLWLNIVEVTRNGDDIDFSVGIASASFAIDNFYE 146
           + LF WL  V   R GD +D   G   AS  +  F+E
Sbjct: 27  RALFRWLGEVAPAR-GDALDCGCGSGQASLGLAEFFE 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,008,684
Number of Sequences: 62578
Number of extensions: 154341
Number of successful extensions: 364
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 13
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)