BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030668
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 40 DILQSYNFPAGLLPKGITQYDIDRETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISEN 99
++L+ Y+ P G+ P T Y+ D ET + + C + S LK+ + ++G++ +
Sbjct: 56 ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 100 KLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGIASASFAIDNFYECPQCGCGLD 155
KLT + G+ KV+ +W+ + ++ + + F+ G+ + + YE + G +D
Sbjct: 116 KLTDVEGIKTKVM-IWVKVTSISTDASKVYFTAGMKKSRSR--DAYEVQRNGLRVD 168
>sp|Q5HE64|PDP_STAAC Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain COL) GN=pdp PE=1 SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q2FWC1|PDP_STAA8 Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain NCTC 8325) GN=pdp PE=3 SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q2FEZ3|PDP_STAA3 Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain USA300) GN=pdp PE=3 SV=2
Length = 433
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q7A4D0|PDP_STAAN Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain N315) GN=pdp PE=1 SV=2
Length = 433
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q99SC3|PDP_STAAM Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=pdp PE=1 SV=2
Length = 433
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q8NVF6|PDP_STAAW Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MW2) GN=pdp PE=3 SV=2
Length = 433
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q6G7H4|PDP_STAAS Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MSSA476) GN=pdp PE=3 SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q2YUL7|PDP_STAAB Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=pdp PE=3 SV=1
Length = 433
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|Q6GET9|PDP_STAAR Pyrimidine-nucleoside phosphorylase OS=Staphylococcus aureus
(strain MRSA252) GN=pdp PE=3 SV=1
Length = 433
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 81 EGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGI 134
+ YQ++YK+K SGY++E L + V + L +T+ DDID +VGI
Sbjct: 331 QAQYQIEYKAKKSGYVTE-----LVSNDIGVASMMLGAGRLTKE-DDIDLAVGI 378
>sp|B3CLR5|SURE_WOLPP 5'-nucleotidase SurE OS=Wolbachia pipientis subsp. Culex pipiens
(strain wPip) GN=surE PE=3 SV=1
Length = 256
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 40 DILQSYNFPAGLLPKGITQYDIDRETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISEN 99
DI+ S NFPA KG+ E G+++ D T + +L GS L + + SG S +
Sbjct: 157 DIVMSINFPATEKVKGVEF----AEQGEYNIDGDLTFTENLNGSLSLNWSREHSGSGSVD 212
Query: 100 KLTS--LTGVSVKVLFLWLNIVEVTRNGDDIDFSVGIASASFAID 142
K+ +T +K+ F +I+ +N +FS IA+ A D
Sbjct: 213 KIKGGFITITPIKLDFTDYDILNAMKNSCAEEFS-SIANTPIASD 256
>sp|Q9XDL1|CR1ID_BACTU Pesticidal crystal protein cry1Id OS=Bacillus thuringiensis
GN=cry1Id PE=2 SV=1
Length = 719
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 13 SLLFIFLHQSAVATSSLSANSDQLSAYDILQSYNFPAG---LLPKGITQYDIDRE--TGQ 67
+L++ + H+SA T+++ NSD ++ +++++N P+G + G T DI + TG
Sbjct: 486 ALVYSWTHRSADRTNTI--NSDSITQIPLVKAFNLPSGASVVRGPGFTGGDILQRTNTGT 543
Query: 68 FHAYLDGTCSFSLEGSYQLKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDD 127
F G ++ + +Y+ +I Y S L T ++ K + N G+D
Sbjct: 544 F-----GDIRVNINPPFAQRYRLRIR-YASTTNLEFHTSINGKAINQG-NFSATMNRGED 596
Query: 128 IDF 130
+D+
Sbjct: 597 LDY 599
>sp|B5EQH0|ERPA_ACIF5 Iron--sulfur cluster insertion protein ErpA OS=Acidithiobacillus
ferrooxidans (strain ATCC 53993) GN=erpA PE=3 SV=1
Length = 124
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 125 GDDIDFSVGIASASFAIDNFYECPQCGCG 153
G +ID+S G+ A F I N CGCG
Sbjct: 91 GAEIDYSEGLEGAQFVIKNPNATTTCGCG 119
>sp|B7JAH6|ERPA_ACIF2 Iron--sulfur cluster insertion protein ErpA OS=Acidithiobacillus
ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455)
GN=erpA PE=3 SV=1
Length = 124
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 125 GDDIDFSVGIASASFAIDNFYECPQCGCG 153
G +ID+S G+ A F I N CGCG
Sbjct: 91 GAEIDYSEGLEGAQFVIKNPNATTTCGCG 119
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 55 GITQYDIDRETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISEN--------------K 100
G D+ +F Y+ SF LE +Y L+ + ISE+ K
Sbjct: 136 GCPALDLLTHPTEFDVYVLELSSFQLETTYSLQTIAATVLNISEDHMDRYLALEDYIQAK 195
Query: 101 LTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGIASA 137
+T L + VL L V + R GD++ F + A A
Sbjct: 196 MTILNNTELAVLPLDFERVGIARPGDEVRFGLNYAEA 232
>sp|Q5UQ65|YR652_MIMIV Uncharacterized protein R652 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R652 PE=4 SV=1
Length = 352
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 52 LPKGITQYDIDR--ETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISENKLTSLTGVSV 109
+P+G+ +D R +F YL +E Y LK+KS Y+ N++T T
Sbjct: 186 IPQGLP-FDFIRGVSIHEFERYLSNN---QIESDYYLKFKS----YMCTNEMTDKT---- 233
Query: 110 KVLFLWLNIVEVTRNGDDIDFSVGIASASFAIDNFYECPQCGCGL 154
+ N V+ NG DI+ S+ + + + F+ C + L
Sbjct: 234 -----YCNEVQYILNGIDINMSLELRGKYYYKNGFFSCKRLNENL 273
>sp|Q3SF18|ERPA_THIDA Putative iron-sulfur cluster insertion protein ErpA OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=erpA PE=3 SV=1
Length = 116
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 125 GDDIDFSVGIASASFAIDNFYECPQCGCG 153
G +ID+S G+ A F I N CGCG
Sbjct: 83 GAEIDYSEGLEGAQFVIKNPNATTTCGCG 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,288,850
Number of Sequences: 539616
Number of extensions: 2129114
Number of successful extensions: 5989
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5983
Number of HSP's gapped (non-prelim): 24
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)