Query 030668
Match_columns 173
No_of_seqs 104 out of 351
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 2.5E-45 8.6E-50 297.1 5.6 118 33-152 49-166 (170)
2 1uw7_A NSP9; viral protein, re 43.7 25 0.00087 27.3 4.1 32 57-88 84-117 (143)
3 2j97_A Replicase polyprotein 1 42.2 41 0.0014 25.0 4.8 29 60-88 53-83 (109)
4 3ee7_A Replicase polyprotein 1 41.3 25 0.00086 26.6 3.6 32 57-88 54-87 (121)
5 2npb_A Selenoprotein W; struct 30.9 35 0.0012 24.4 2.8 33 37-76 22-56 (96)
6 3dex_A SAV_2001; alpha-beta pr 30.6 64 0.0022 23.7 4.3 32 37-75 32-64 (107)
7 3qth_A Uncharacterized protein 24.0 35 0.0012 27.1 1.9 15 36-50 144-158 (176)
8 2k8q_A Protein SHQ1; beta-sand 23.9 57 0.0019 24.9 3.0 19 57-75 63-81 (134)
9 2nzc_A Hypothetical protein; s 23.8 21 0.00072 25.4 0.5 17 98-114 66-82 (86)
10 3tek_A Thermodbp-single strand 23.4 44 0.0015 25.8 2.3 35 40-74 103-137 (148)
11 2kyj_A LITX; scorpion toxin, i 22.6 24 0.00081 21.2 0.5 23 139-161 2-28 (36)
12 2p0g_A Selenoprotein W-related 22.1 73 0.0025 23.2 3.2 33 37-76 23-56 (105)
13 2oka_A Hypothetical protein; P 21.5 72 0.0025 23.2 3.1 33 37-76 25-58 (104)
14 2f9z_C Protein (chemotaxis met 20.6 93 0.0032 24.1 3.8 37 35-74 107-149 (159)
15 2bze_A KIAA0252 protein; human 20.4 2.5E+02 0.0085 21.2 6.1 49 86-149 68-116 (153)
16 1ulr_A Putative acylphosphatas 20.0 86 0.0029 21.4 3.1 21 55-75 29-49 (88)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=2.5e-45 Score=297.06 Aligned_cols=118 Identities=23% Similarity=0.503 Sum_probs=114.2
Q ss_pred CCcchHHHHHHhcCCCCCCCCCCceeEEEeCCCCeEEEEecCeeEEEEecceEEEEeeEEEEEEecCceecccceeEEEE
Q 030668 33 SDQLSAYDILQSYNFPAGLLPKGITQYDIDRETGQFHAYLDGTCSFSLEGSYQLKYKSKISGYISENKLTSLTGVSVKVL 112 (173)
Q Consensus 33 ~~~~tayelL~~~gLP~GLLP~~V~~y~l~~~tG~f~v~l~~~C~~~~~~~~~v~Y~~~ItG~i~~g~I~~L~GVk~K~l 112 (173)
.+++++||+|++||||+||||++|++|+||++||+|||+|+++|+|+++++|+|+|+++|||+|++|+|++|+||++|+|
T Consensus 49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L 128 (170)
T 1ydu_A 49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM 128 (170)
T ss_dssp TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence 56789999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeeeeeEEEEcCCeEEEEEceeeeeeeccccccCCCCCC
Q 030668 113 FLWLNIVEVTRNGDDIDFSVGIASASFAIDNFYECPQCGC 152 (173)
Q Consensus 113 f~Wv~I~eI~~d~~~I~F~vG~~sksFP~s~F~~sP~C~~ 152 (173)
+|++|+||.+++|+|+|++| ++++||+++|+.+|.|..
T Consensus 129 -lWv~V~eI~v~~~kI~F~vG-i~ksfp~saFe~~~~c~~ 166 (170)
T 1ydu_A 129 -IWVKVTSISTDASKVYFTAG-MKKSRSRDAYGVQRNGLR 166 (170)
T ss_dssp -SEESCCCBEECSSSEECTTS-SSSCCCHHHHSSCCCCCC
T ss_pred -EEeeEEEEEEeCCEEEEEEc-CcccccHHHhcCCcCCcc
Confidence 99999999999999999998 589999999999999975
No 2
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=43.69 E-value=25 Score=27.29 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=23.6
Q ss_pred eeEEEeCCCCeEEEEecCeeEEEEe--cceEEEE
Q 030668 57 TQYDIDRETGQFHAYLDGTCSFSLE--GSYQLKY 88 (173)
Q Consensus 57 ~~y~l~~~tG~f~v~l~~~C~~~~~--~~~~v~Y 88 (173)
..++.+..+|...+.|+-||.|.++ +|-+|.|
T Consensus 84 vk~e~d~G~g~v~iELePPckF~v~~~~G~~VkY 117 (143)
T 1uw7_A 84 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKY 117 (143)
T ss_dssp EEEECTTSSCEEEEEBCCCCEEEECCTTSCEEEE
T ss_pred EEEEecCCceEEEEecCCCcEEEEEcCCCCEEEE
Confidence 3555554456999999999999997 4555655
No 3
>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B
Probab=42.17 E-value=41 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.566 Sum_probs=22.6
Q ss_pred EEeCCCCeEEEEecCeeEEEEe--cceEEEE
Q 030668 60 DIDRETGQFHAYLDGTCSFSLE--GSYQLKY 88 (173)
Q Consensus 60 ~l~~~tG~f~v~l~~~C~~~~~--~~~~v~Y 88 (173)
....++|...+.|+-||.|.++ +|-+|.|
T Consensus 53 k~e~d~g~v~iELePPckF~v~~~~G~~vkY 83 (109)
T 2j97_A 53 KWEHDSGVVTVELEPPCRFVIDTPTGPQIKY 83 (109)
T ss_dssp EECCSSSCEEEEBCCCEEEEECCTTSCEEEE
T ss_pred EEEccCCEEEEEcCCCcEEEEECCCCCEEEE
Confidence 3344689999999999999987 4566666
No 4
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=41.29 E-value=25 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=22.7
Q ss_pred eeEEEeCCCCeEEEEecCeeEEEEe--cceEEEE
Q 030668 57 TQYDIDRETGQFHAYLDGTCSFSLE--GSYQLKY 88 (173)
Q Consensus 57 ~~y~l~~~tG~f~v~l~~~C~~~~~--~~~~v~Y 88 (173)
..++.+..||...+.|+-||.|.++ +|-+|.|
T Consensus 54 vk~e~d~G~g~v~iELePPckF~v~~~~g~~vkY 87 (121)
T 3ee7_A 54 ARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKY 87 (121)
T ss_dssp EEECCC--CEEEEEEBCCCEEEEECCTTSCEEEE
T ss_pred EEEEecCCCCeEEEecCCCcEEEEEcCCCCEEEE
Confidence 3555553348999999999999997 5555665
No 5
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=30.91 E-value=35 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=22.9
Q ss_pred hHHHHHHhcCCCCCCCCCCce-eEEEeC-CCCeEEEEecCee
Q 030668 37 SAYDILQSYNFPAGLLPKGIT-QYDIDR-ETGQFHAYLDGTC 76 (173)
Q Consensus 37 tayelL~~~gLP~GLLP~~V~-~y~l~~-~tG~f~v~l~~~C 76 (173)
-+-|+|++| |..+. +..+.+ .+|.|+|+.++.-
T Consensus 22 laqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~l 56 (96)
T 2npb_A 22 LKEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKL 56 (96)
T ss_dssp HHHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEE
T ss_pred HHHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEE
Confidence 456777776 54455 666655 4699999998753
No 6
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=30.64 E-value=64 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=24.0
Q ss_pred hHHHHHHhcCCCCCCCCCCceeEEEeC-CCCeEEEEecCe
Q 030668 37 SAYDILQSYNFPAGLLPKGITQYDIDR-ETGQFHAYLDGT 75 (173)
Q Consensus 37 tayelL~~~gLP~GLLP~~V~~y~l~~-~tG~f~v~l~~~ 75 (173)
-+-|+|.++ |..+.+.++.+ .+|.|+|++++.
T Consensus 32 laqeLl~tF-------~~~l~eVsL~Pg~gG~FeV~vdg~ 64 (107)
T 3dex_A 32 LAQELLTTF-------ETELTELALKPGTGGVFVVRVDDE 64 (107)
T ss_dssp HHHHHHHHS-------TTTEEEEEEEEESSSCEEEEETTE
T ss_pred HHHHHHHhc-------ccccceEEEEeCCCceEEEEECCE
Confidence 567888887 45567777776 568999999765
No 7
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=24.05 E-value=35 Score=27.07 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=13.8
Q ss_pred chHHHHHHhcCCCCC
Q 030668 36 LSAYDILQSYNFPAG 50 (173)
Q Consensus 36 ~tayelL~~~gLP~G 50 (173)
.|||.+|+..|.|.|
T Consensus 144 tTAYaILR~~GV~LG 158 (176)
T 3qth_A 144 SMVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCCcC
Confidence 389999999999998
No 8
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=23.90 E-value=57 Score=24.86 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=15.7
Q ss_pred eeEEEeCCCCeEEEEecCe
Q 030668 57 TQYDIDRETGQFHAYLDGT 75 (173)
Q Consensus 57 ~~y~l~~~tG~f~v~l~~~ 75 (173)
..-.||.++|.|.|++++.
T Consensus 63 ~kA~YD~d~~~~~VtLpK~ 81 (134)
T 2k8q_A 63 STAQYDSKDECINVKVAKL 81 (134)
T ss_dssp CEEEEETTTTEEEEEEEES
T ss_pred cceeEeccCCEEEEEEeCC
Confidence 4577888899999999975
No 9
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=23.81 E-value=21 Score=25.37 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.4
Q ss_pred cCceecccceeEEEEEE
Q 030668 98 ENKLTSLTGVSVKVLFL 114 (173)
Q Consensus 98 ~g~I~~L~GVk~K~lf~ 114 (173)
.|++.+|+||++|-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 48899999999998753
No 10
>3tek_A Thermodbp-single stranded DNA binding protein; leucine zipper; 2.00A {Thermoproteus tenax}
Probab=23.39 E-value=44 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCCCCCceeEEEeCCCCeEEEEecC
Q 030668 40 DILQSYNFPAGLLPKGITQYDIDRETGQFHAYLDG 74 (173)
Q Consensus 40 elL~~~gLP~GLLP~~V~~y~l~~~tG~f~v~l~~ 74 (173)
|+..+|||-+|=+=.-+++-.+|.+||.+...-++
T Consensus 103 E~~pky~l~kGDiFmiiTeleld~~TGEL~W~kdk 137 (148)
T 3tek_A 103 EAVPRYNLERGDIFMISTELVLDPDTGELLWNRDK 137 (148)
T ss_dssp THHHHHTCCTTCCEEEEEEEEECTTTCCEEEEEEE
T ss_pred hhhhhhCCCcCcEEEEEEEEEEcCCccceEEeccC
Confidence 45678999999888889999999999998766544
No 11
>2kyj_A LITX; scorpion toxin, insect toxin, disulfide-directed hairpin, to; NMR {Liocheles australasiae} PDB: 2lds_A
Probab=22.59 E-value=24 Score=21.16 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=17.5
Q ss_pred eecccccc----CCCCCCCCCccCccc
Q 030668 139 FAIDNFYE----CPQCGCGLDCVSGQV 161 (173)
Q Consensus 139 FP~s~F~~----sP~C~~g~~c~~~~~ 161 (173)
||+|.|-+ |..|.....|+.-|+
T Consensus 2 ~pls~~y~scvrp~kckp~lkcn~aqi 28 (36)
T 2kyj_A 2 FPLSKEYESCVRPRKCKPPLKCNKAQI 28 (36)
T ss_dssp CCEECSSCBCCTTCEECTTCEECTTCB
T ss_pred CchhhhhhhccCccccCCCcccCcceE
Confidence 78877765 567888888987765
No 12
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=22.09 E-value=73 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.430 Sum_probs=22.9
Q ss_pred hHHHHHHhcCCCCCCCCCCceeEEEeC-CCCeEEEEecCee
Q 030668 37 SAYDILQSYNFPAGLLPKGITQYDIDR-ETGQFHAYLDGTC 76 (173)
Q Consensus 37 tayelL~~~gLP~GLLP~~V~~y~l~~-~tG~f~v~l~~~C 76 (173)
-+-|+|.+|+ ..+.+.++.+ .+|.|+|++++.-
T Consensus 23 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~l 56 (105)
T 2p0g_A 23 LSQELLHTFS-------EEIEYVALHPDTGGRFEIFCNGVQ 56 (105)
T ss_dssp HHHHHHHHTT-------TTEEEEEEEEESTTCEEEEETTEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEE
Confidence 4567777764 3355677765 4699999998753
No 13
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=21.49 E-value=72 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=22.6
Q ss_pred hHHHHHHhcCCCCCCCCCCceeEEEeC-CCCeEEEEecCee
Q 030668 37 SAYDILQSYNFPAGLLPKGITQYDIDR-ETGQFHAYLDGTC 76 (173)
Q Consensus 37 tayelL~~~gLP~GLLP~~V~~y~l~~-~tG~f~v~l~~~C 76 (173)
-+-|+|.+|+ ..+.+.++.+ .+|.|+|++++.-
T Consensus 25 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~l 58 (104)
T 2oka_A 25 LAQELLSTFA-------DDLGKVCLEPGTGGVFRITCDGVQ 58 (104)
T ss_dssp HHHHHHHHST-------TTCSEEEEEEECTTCEEEEETTEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEE
Confidence 4567787764 3344666665 4799999998753
No 14
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=20.61 E-value=93 Score=24.06 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=27.2
Q ss_pred cchHHHHHHhcCCC------CCCCCCCceeEEEeCCCCeEEEEecC
Q 030668 35 QLSAYDILQSYNFP------AGLLPKGITQYDIDRETGQFHAYLDG 74 (173)
Q Consensus 35 ~~tayelL~~~gLP------~GLLP~~V~~y~l~~~tG~f~v~l~~ 74 (173)
.+-+.++|+++|+| .|--+.. -.++.+||.+|++.-+
T Consensus 107 v~~a~~~L~~~gI~i~aeD~GG~~gR~---i~f~~~tG~v~vk~~~ 149 (159)
T 2f9z_C 107 VEAVKKHLKDFGIKLLAEDTGGNRARS---VEYNIETGKLLVRKVG 149 (159)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSCEE---EEEETTTTEEEEECC-
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCcE---EEEECCCCEEEEEEcC
Confidence 35789999999999 4555544 3467889999998543
No 15
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=20.43 E-value=2.5e+02 Score=21.20 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred EEEeeEEEEEEecCceecccceeEEEEEEeeeeeEEEEcCCeEEEEEceeeeeeeccccccCCC
Q 030668 86 LKYKSKISGYISENKLTSLTGVSVKVLFLWLNIVEVTRNGDDIDFSVGIASASFAIDNFYECPQ 149 (173)
Q Consensus 86 v~Y~~~ItG~i~~g~I~~L~GVk~K~lf~Wv~I~eI~~d~~~I~F~vG~~sksFP~s~F~~sP~ 149 (173)
++.=.+|.|..+.++-.++.+..+... |....|...+.|+++.+-.+|-
T Consensus 68 ~YRl~qI~gv~~~~k~Y~l~~~~T~~~---------------L~l~~g~~~r~~~m~~vSN~~f 116 (153)
T 2bze_A 68 VYRVAEITGVVETAKVYQLGGTRTNKG---------------LQLRHGNDQRVFRLEFVSNQEF 116 (153)
T ss_dssp CEEEEEEEEEEEEEEEEEETTEEEEEE---------------EEEESSSCEEEECGGGBCCSCC
T ss_pred cEEEEEEEeEEecCcccccCCcccceE---------------EEEEECCcceEEEeeEeeCCCC
Confidence 444478999999888888887655533 3444555667788877776664
No 16
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=20.04 E-value=86 Score=21.42 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.7
Q ss_pred CceeEEEeCCCCeEEEEecCe
Q 030668 55 GITQYDIDRETGQFHAYLDGT 75 (173)
Q Consensus 55 ~V~~y~l~~~tG~f~v~l~~~ 75 (173)
++++|-.|..+|.+++...++
T Consensus 29 gl~G~V~N~~dG~Vei~~eG~ 49 (88)
T 1ulr_A 29 GLSGYAENLPDGRVEVVAEGP 49 (88)
T ss_dssp TCEEEEEECTTSCEEEEEESC
T ss_pred CCeEEEEECCCCcEEEEEEeC
Confidence 578999999999999999875
Done!