BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030670
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 94

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 82/93 (88%)

Query: 25  GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKR 84
             REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKR
Sbjct: 2   SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 61

Query: 85  KTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
           KTING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 62  KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94


>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
          Length = 93

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 82/93 (88%)

Query: 25  GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKR 84
             REQD YLPIAN++RIMK A+P  GKIAKDAK+ VQECVSEFISFITSEAS++C +EKR
Sbjct: 1   SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 60

Query: 85  KTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
           KTING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 61  KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93


>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 92

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 83/92 (90%)

Query: 26  VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRK 85
           ++EQDR+LPIAN++RIMK ALP N KIAK+AK+ +QECVSEFISFITSEAS+KCQ+EKRK
Sbjct: 1   MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRK 60

Query: 86  TINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
           T+NG+D+L+AM +LGFE+Y + LK YL +YRE
Sbjct: 61  TVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92


>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
          Length = 179

 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 30  DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
           D  +P A I++++K+ LP N ++A DA++ V  C +EFI  I+SEA++ C K ++KTI+ 
Sbjct: 13  DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 71

Query: 90  DDLLWAMATLGFEDYIDPLKAYLMRYR 116
           + ++ A+ +LGF  YI  +K  L   +
Sbjct: 72  EHVIQALESLGFGSYISEVKEVLQECK 98


>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
           Complex
 pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
           Complex
 pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
           Complex
 pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
           Complex
          Length = 128

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 27  REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
           R +D  LP A I R++K+ALP +  ++K+A+  +    S F  F+TS ++    K+  KT
Sbjct: 4   RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT 63

Query: 87  INGDDLLWAMATLGFEDYIDPLKAYLMRYR 116
           I   D+L  +  L FE ++  L   L  YR
Sbjct: 64  ITAKDILQTLTELDFESFVPSLTQDLEVYR 93


>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
 pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
 pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
          Methanothermus Fervidus
          Length = 69

 Score = 33.5 bits (75), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
          LPIA I RI+K A     +++ DA+ T+ + + E    I SEA    +   RKTI  +D+
Sbjct: 3  LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60

Query: 93 LWAM 96
            A+
Sbjct: 61 ELAV 64


>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
          Methanothermus Fervidus
 pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
          Methanothermus Fervidus
          Length = 68

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
          LPIA I RI+K A     +++ DA+  + + + E    I SEA    +   RKTI  +D+
Sbjct: 3  LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60

Query: 93 LWA 95
            A
Sbjct: 61 ELA 63


>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
          Methanothermus Fervidus
          Length = 69

 Score = 32.7 bits (73), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
          LPIA I RI+K A     +++ DA+  + + + E    I SEA    +   RKTI  +D+
Sbjct: 4  LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61

Query: 93 LWA 95
            A
Sbjct: 62 ELA 64


>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
          Histone Hmfb From Methanothermus Fervidus
          Length = 69

 Score = 32.7 bits (73), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
          LPIA I RI+K A     +++ DA+ T+ + + E    I SEA    +   RKTI  +D+
Sbjct: 3  LPIAPIGRIIKDA--GAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDI 60

Query: 93 LWAM 96
            A+
Sbjct: 61 ELAV 64


>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
           Kandleri
          Length = 154

 Score = 30.8 bits (68), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 33  LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
           LP A I RI ++ +    ++++DAKDT+ + V     ++ + A        +KT+  ++ 
Sbjct: 5   LPKAAIERIFRQGI-GERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLX-EEH 62

Query: 93  LWAMATL----GFEDY 104
           L A+A +    G EDY
Sbjct: 63  LKALADVLXVEGVEDY 78


>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
           ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
           CD RNA
 pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
           ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
           CD RNA
 pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
 pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
 pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
           Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
          Length = 388

 Score = 30.4 bits (67), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 32  YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDD 91
           Y P + +SRI +++LP   K+A D K    E   ++ +F+   + +  +++ R      D
Sbjct: 83  YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137

Query: 92  LLWAMATLGFEDYIDPLKAYLMRYRE 117
           LL   A    +D    +  +  R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163


>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
           And Fibrillarin Complex
          Length = 268

 Score = 29.3 bits (64), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 32  YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDD 91
           Y P + +SRI +++LP   K+A D K    E   ++ +F+   + +  +++ R      D
Sbjct: 83  YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137

Query: 92  LLWAMATLGFEDYIDPLKAYLMRYRE 117
           LL   A    +D    +  +  R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163


>pdb|3DXK|G Chain G, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0944636
 pdb|3DXM|G Chain G, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
           Ck0993548
 pdb|3RSE|G Chain G, Structural And Biochemical Characterization Of Two Binding
           Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
           COMPLEX
 pdb|3UKR|G Chain G, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-666
 pdb|3UKU|G Chain G, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
 pdb|3ULE|G Chain G, Structure Of Bos Taurus Arp2/3 Complex With Bound
           Inhibitor Ck-869 And Atp
          Length = 151

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 17  GEQSPHAGGVREQDRYLPIANISRIMKKAL---PANGKIAKDAKDTVQECVSE-FISFIT 72
           G+  P  G   E D  L   N++  ++ AL   P N K ++  KD     V +  ISF  
Sbjct: 33  GQAGPDEG---EVDSCLRQGNMTAALQAALKNPPINTK-SQAVKDRAGSIVLKVLISFKA 88

Query: 73  SEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSARGGDGSAK 132
           ++     Q   +   NG DLL      GFE   D   A L+++ E   K  A GG GS  
Sbjct: 89  NDIEKAVQSLDK---NGVDLLMKYIYKGFESPSDNSSAVLLQWHE---KALAAGGVGSIV 142

Query: 133 R 133
           R
Sbjct: 143 R 143


>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
          Length = 277

 Score = 28.9 bits (63), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 30  DRYLPIANISRIMKKALPA 48
           DR LPI N +R+  KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246


>pdb|1K8K|G Chain G, Crystal Structure Of Arp23 COMPLEX
 pdb|1TYQ|G Chain G, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
           Calcium
 pdb|1U2V|G Chain G, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
           Calcium
 pdb|2P9I|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp And Crosslinked With Gluteraldehyde
 pdb|2P9K|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Atp And Crosslinked With Glutaraldehyde
 pdb|2P9L|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX
 pdb|2P9N|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9P|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Adp
 pdb|2P9S|G Chain G, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
           AtpMG2+
 pdb|2P9U|G Chain G, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
           With Amp-Pnp And Calcium
          Length = 151

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 17  GEQSPHAGGVREQDRYLPIANISRIMKKAL---PANGKIAKDAKDTVQECVSE-FISFIT 72
           G+  P  G   E D  L   N++  ++ AL   P N K ++  KD     V +  ISF  
Sbjct: 33  GQAGPDEG---EVDSCLRQGNMTAALQAALKNPPINTK-SQAVKDRAGSIVLKVLISFKA 88

Query: 73  SEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSARGGDGSAK 132
           ++     Q   +   NG DLL      GFE   D   A L+++ E   K  A GG GS  
Sbjct: 89  NDIEKAVQSLDK---NGVDLLMKYIYKGFESPSDNSSAVLLQWHE---KALAAGGVGSIV 142

Query: 133 R 133
           R
Sbjct: 143 R 143


>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 119

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 33  LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
           LP+A I ++MK A P    I+ +A     +    FI+ +T  A    +  KR+T+   D+
Sbjct: 42  LPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDI 100

Query: 93  LWAMATLGFEDYI 105
             A++     D++
Sbjct: 101 AAALSKSDMFDFL 113


>pdb|1BRO|A Chain A, Bromoperoxidase A2
 pdb|1BRO|B Chain B, Bromoperoxidase A2
          Length = 277

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 30  DRYLPIANISRIMKKALPA 48
           DR LPI N +R+  KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246


>pdb|1A7U|A Chain A, Chloroperoxidase T
 pdb|1A7U|B Chain B, Chloroperoxidase T
 pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
 pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
          Length = 277

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 30  DRYLPIANISRIMKKALPA 48
           DR LPI N +R+  KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246


>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
 pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
           Symmetric Oligomeric Domains
          Length = 456

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 30  DRYLPIANISRIMKKALPA 48
           DR LPI N +R+  KALP+
Sbjct: 229 DRTLPIENTARVFHKALPS 247


>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
          Length = 97

 Score = 28.5 bits (62), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 33  LPIANISRIMKKALPANGK-IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDD 91
           LP+A I +IMK  L  + K I+ +A     +    FI+ +T  A    +  KR+T+  +D
Sbjct: 20  LPLARIKKIMK--LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND 77

Query: 92  LLWAMATLGFEDY 104
           +  AMA   F+ +
Sbjct: 78  I--AMAITKFDQF 88


>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 94

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 33  LPIANISRIMKKALPANGK-IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDD 91
           LP+A I +IMK  L  + K I+ +A     +    FI+ +T  A    +  KR+T+  +D
Sbjct: 17  LPLARIKKIMK--LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND 74

Query: 92  LLWAMATLGFEDY 104
           +  AMA   F+ +
Sbjct: 75  I--AMAITKFDQF 85


>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
          Length = 153

 Score = 26.6 bits (57), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 16 GGEQSPHAGGVREQDRYLP---------IANISRIMKKALPANGKIAKDAKDT 59
          G EQSP+  G+ E + YLP         +  +++I   A+   G+I+ D   T
Sbjct: 41 GPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKT 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,422,557
Number of Sequences: 62578
Number of extensions: 216735
Number of successful extensions: 358
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 30
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)