BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030670
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/168 (71%), Positives = 137/168 (81%), Gaps = 6/168 (3%)
Query: 1 MAEAPT-SPAG-GSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKD 58
MAE+ SP G GSHESGG+QSP + VREQDR+LPIANISRIMK+ LPANGKIAKDAK+
Sbjct: 1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60
Query: 59 TVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR-- 116
VQECVSEFISF+TSEASDKCQ+EKRKTINGDDLLWAMATLGFEDY++PLK YLMRYR
Sbjct: 61 IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120
Query: 117 EGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLNYANPHVTFSLL 164
EGDTKGSA+GGD +AK+D + GQ +Q A QGP Y N ++
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP--YGNSQAQQHMM 166
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/154 (68%), Positives = 122/154 (79%), Gaps = 5/154 (3%)
Query: 18 EQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77
+QSP + VREQDR+LPIANISRIMK+ LP NGKIAKDAK+T+QECVSEFISF+TSEASD
Sbjct: 19 DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78
Query: 78 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSARGGDGSAKRDT 135
KCQ+EKRKTINGDDLLWAMATLGFEDYIDPLK YLMRYR EGDTKGS +GG+ SAKRD
Sbjct: 79 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDG 138
Query: 136 IGALPGQNAQYALQGPLN---YANPHVTFSLLHL 166
+ Q +Q QG + Y N + ++ +
Sbjct: 139 QPSQVSQFSQVPQQGSFSQGPYGNSQGSNMMVQM 172
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 213 bits (541), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 117/144 (81%), Gaps = 10/144 (6%)
Query: 1 MAEAPTSPAGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTV 60
MA+ P+SPAG ESGG VREQDRYLPIANISRIMKKALP NGKI KDAKDTV
Sbjct: 1 MADTPSSPAGDGGESGGS-------VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTV 53
Query: 61 QECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR--EG 118
QECVSEFISFITSEASDKCQKEKRKT+NGDDLLWAMATLGFEDY++PLK YL RYR EG
Sbjct: 54 QECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEG 113
Query: 119 DTKGSARGGDGSAKRDTIGALPGQ 142
D KGS + GDGS RD G + G+
Sbjct: 114 DNKGSGKSGDGS-NRDAGGGVSGE 136
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/129 (76%), Positives = 114/129 (88%), Gaps = 4/129 (3%)
Query: 11 GSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISF 70
G ESG P +GGVREQDR+LPIANISRIMKKA+PANGKIAKDAK+T+QECVSEFISF
Sbjct: 19 GHDESG--SPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISF 76
Query: 71 ITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE--GDTKGSARGGD 128
+TSEASDKCQKEKRKTING+DLL+AM TLGFE+Y+DPLK YL +YRE GD+K S++ GD
Sbjct: 77 VTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGD 136
Query: 129 GSAKRDTIG 137
GS K+DTIG
Sbjct: 137 GSVKKDTIG 145
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 112/142 (78%), Gaps = 9/142 (6%)
Query: 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRK 85
VREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 86 TINGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSARGGDGSAKRDTIG------ 137
TINGDDLLWAMATLGFEDYI+PLK YL +YR EGD+K +A+ DGS K+D +G
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASS 148
Query: 138 -ALPGQNAQYALQGPLNYANPH 158
A G Q A + Y P
Sbjct: 149 SAAEGMGQQGAYNQGMGYMQPQ 170
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 105/113 (92%), Gaps = 2/113 (1%)
Query: 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRK 85
VREQDR+LPIANISRIMKKA+PANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKRK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 86 TINGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSARGGDGSAKRDTI 136
TINGDDLLWAMATLGFEDYI+PLK YL +YR EGD+K +A+ GDGS K+D +
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVL 148
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/123 (69%), Positives = 99/123 (80%), Gaps = 3/123 (2%)
Query: 9 AGGSHESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFI 68
A ++SGG + REQDR+LPIAN+SRIMKKALPAN KI+KDAK+TVQECVSEFI
Sbjct: 2 ADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFI 61
Query: 69 SFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREGD---TKGSAR 125
SFIT EASDKCQ+EKRKTINGDDLLWAM TLGFEDY++PLK YL +YRE + T + R
Sbjct: 62 SFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGR 121
Query: 126 GGD 128
GD
Sbjct: 122 QGD 124
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/116 (73%), Positives = 98/116 (84%), Gaps = 6/116 (5%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQDR+LPIAN+SRIMKKALPAN KI+KDAK+T+QECVSEFISF+T EASDKCQKEKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSAR---GGD-GSAKRDTI 136
INGDDLLWAM TLGFEDY++PLK YL R+R EG+ G R GG+ G +RD +
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVGEHQRDAV 141
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 96/112 (85%), Gaps = 3/112 (2%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
+EQDR+LPIANI RIM++A+P NGKIAKD+K++VQECVSEFISFITSEASDKC KEKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSARGGDGSAKRDTI 136
INGDDL+W+M TLGFEDY++PLK YL YR EGDTKGS R + K+D +
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGS-RASELPVKKDVV 131
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 86/96 (89%), Gaps = 2/96 (2%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
+EQDR+LPIAN+ RIMKK LP NGKI+KDAK+TVQECVSEFISF+T EASDKCQ+EKRKT
Sbjct: 35 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKT 94
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKG 122
INGDD++WA+ TLGFEDY+ PLK YL +YR DT+G
Sbjct: 95 INGDDIIWAITTLGFEDYVAPLKVYLCKYR--DTEG 128
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 88/99 (88%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQDRYLPIANI RIMKKALP N K+AKDAK+TVQ+CVSEFISFITSEASDKCQ+EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSAR 125
ING+D++ AM +LGFE+Y++PLK YL++YRE + + +
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNNK 145
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 110/151 (72%), Gaps = 8/151 (5%)
Query: 3 EAPTSPAGGSH-ESGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQ 61
+A S A G H ES G + P+ REQD YLPIAN++RIMK ++P++GKIAKDAK+ VQ
Sbjct: 33 DAEGSLASGDHDESCGSKDPY----REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQ 88
Query: 62 ECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTK 121
ECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE K
Sbjct: 89 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRES-MK 147
Query: 122 GSARGGDGSAKRDTIGALPGQNAQYALQGPL 152
G G + T A+P + + + GPL
Sbjct: 148 G--EKGINATVVTTTDAIPEELTEESFSGPL 176
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 92/121 (76%), Gaps = 5/121 (4%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 51 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 110
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREG-----DTKGSARGGDGSAKRDTIGALPG 141
ING+D+L+AM+TLGF+ Y++PLK YL ++RE G+ GDG ++ T A
Sbjct: 111 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGTVTTGDGLSEELTEEAFTN 170
Query: 142 Q 142
Q
Sbjct: 171 Q 171
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 86/105 (81%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSARGGDGSA 131
ING+D+L+AM+TLGF+ Y++PLK YL ++RE GG SA
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSA 157
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 86/105 (81%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSARGGDGSA 131
ING+D+L+AM+TLGF+ Y++PLK YL ++RE GG SA
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSA 157
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 82/91 (90%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
ING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFRE 143
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 82/91 (90%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
ING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFRE 143
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 82/91 (90%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD YLPIAN++RIMK A+P GKIAKDAK+ VQECVSEFISFITSEAS++C +EKRKT
Sbjct: 53 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT 112
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
ING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 113 INGEDILFAMSTLGFDSYVEPLKLYLQKFRE 143
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/134 (55%), Positives = 91/134 (67%), Gaps = 7/134 (5%)
Query: 6 TSPAGGSHESGG-------EQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKD 58
+S + HE G +Q + V+EQDR LPIAN+ RIMK LPAN K++K+AK+
Sbjct: 22 SSSSNHQHEHDGLVVVVEDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKE 81
Query: 59 TVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREG 118
T+QECVSEFISF+T EASDKC KEKRKT+NGDD+ WAMA LGF+DY LK YL RYR
Sbjct: 82 TMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVL 141
Query: 119 DTKGSARGGDGSAK 132
+ + G G K
Sbjct: 142 EGEKPNHHGKGGPK 155
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 99/141 (70%), Gaps = 6/141 (4%)
Query: 15 SGGEQSPHAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSE 74
+GGE+ VREQDR++PIAN+ RIM++ LPA+ KI+ D+K+T+QECVSE+ISFIT E
Sbjct: 48 NGGEEE---CTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGE 104
Query: 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR--EGDTKGSARGGDGSAK 132
A+++CQ+E+RKTI +D+LWAM+ LGF+DYI+PL YL RYR EG+ S G S
Sbjct: 105 ANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMT 164
Query: 133 RDTIGALP-GQNAQYALQGPL 152
+ P G +Y GP+
Sbjct: 165 NGLVVKRPNGTMTEYGAYGPV 185
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 92/113 (81%), Gaps = 1/113 (0%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
REQD+Y+PIAN+ RIM+K LP++ KI+ DAK+T+QECVSE+ISF+T EA+++CQ+E+RKT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKT 117
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDT-KGSARGGDGSAKRDTIGA 138
I +D+LWAM+ LGF++Y+DPL ++ RYRE +T +GSA G+ + R T G
Sbjct: 118 ITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRGEPPSLRQTYGG 170
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 85/117 (72%), Gaps = 6/117 (5%)
Query: 6 TSPAGGSHESGGEQSP-----HAGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTV 60
TSP + E+GG S +REQDR+LPI N++R+MK LP + K++KDAK+ +
Sbjct: 11 TSPED-TQENGGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECM 69
Query: 61 QECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
QECVSE ISF+TSEASD+C +KRKTING+D+L ++ LGFE+Y + LK YL +YR+
Sbjct: 70 QECVSELISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 75/92 (81%)
Query: 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTI 87
++DR LPIAN+ R+MK+ LP+N KI+K+AK TVQEC +EFISF+T EAS+KC +E RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 88 NGDDLLWAMATLGFEDYIDPLKAYLMRYREGD 119
NGDD+ WA++TLG ++Y D + +L +YRE +
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAE 94
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 73/90 (81%)
Query: 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTI 87
EQDR+LPI N++R+MK LPA K++KDAK+ +QECVSEFISF+TSEA D+C KRKTI
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 88 NGDDLLWAMATLGFEDYIDPLKAYLMRYRE 117
NG+D+L ++ LGFE+Y + LK YL +YR+
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYRQ 111
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 74/92 (80%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LPIAN++RIMK ALP N KI+K+AKD VQ+CVSEFISF+T EAS++C +EKRKTI G+D+
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 93 LWAMATLGFEDYIDPLKAYLMRYREGDTKGSA 124
L A+ TLGFE+Y + LK L +YRE + ++
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYREQQARSAS 103
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 5/75 (6%)
Query: 60 VQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREG- 118
VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 119 ----DTKGSARGGDG 129
G+ GDG
Sbjct: 61 KGEKGIGGTVTTGDG 75
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP+AN+ R++KK LP KI AK +C EF+ F+ EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 93 LWAMATLGFEDYIDPLKAYLMRYREGDTKGSAR 125
L + LGF+ Y+DP+ AY+ YRE + G R
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFERAGGNR 126
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKR 84
G ++D LP A +++I+K+ LP + ++A+DA+D + EC EFI+ ++SE++D C KE +
Sbjct: 8 GKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDK 67
Query: 85 KTINGDDLLWAMATLGFEDYIDPLKAYLMRYR---EGDTKGSARGGDGS 130
+TI + +L A+ LGF +YI+ + A +++ DT+ S + G+
Sbjct: 68 RTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGA 116
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSARGGD 128
+N D+L AM + F+ +I PLK L YR D KG +
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYRR-DEKGKKEASE 104
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
+E + LP A +S+++K+ LP + K + + +D + EC EFI I+SEA+D C +E+++T
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 87 INGDDLLWAMATLGFEDY 104
I + ++ A+ LGF DY
Sbjct: 67 IAAEHVIKALTELGFSDY 84
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR 116
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR 116
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR 116
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKT 86
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ K KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 87 INGDDLLWAMATLGFEDYIDPLKAYLMRYR 116
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D +P A I++++K+ LP N ++A DA++ V C +EFI I+SEA++ C K ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 90 DDLLWAMATLGFEDYIDPLKAYL 112
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D +P A I++++K+ LP N ++A DA++ V C +EFI I+SEA++ C K ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 90 DDLLWAMATLGFEDYIDPLKAYL 112
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D +P A I++++K+ LP N ++A DA++ V C +EFI I+SEA++ C K ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 90 DDLLWAMATLGFEDYIDPLKAYL 112
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D +P A I++++K+ LP N ++A DA++ V C +EFI I+SEA++ C K ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 90 DDLLWAMATLGFEDYIDPLKAYL 112
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP A+I++I+K+ +P ++A ++++ + C SEFI I+SEA++ C +KTIN + +
Sbjct: 20 LPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHV 78
Query: 93 LWAMATLGFEDYIDPLKAYLMRYREGDTK 121
L A+ LGF DY +A L +E K
Sbjct: 79 LEALERLGFHDYKQEAEAVLHDCKEVAAK 107
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP A + +++ LP + K+A+D + EC EFI ++SEA++ C+KE +KTI + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 93 LWAMATLGFEDYI 105
+ A+ L F++YI
Sbjct: 72 IKALENLEFKEYI 84
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP A + +++ + L + KDA++ + EFI ++S AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 93 LWAMATLGFEDYIDPLKAYLMRYR 116
+ A+ L + ++I L+ L+ ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP A ++RI+K +LP AK+++ + + +I ++T+ + D R TI+ D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 93 LWAMATLGFEDYIDPLKAYL 112
A+ + FE++ L+ YL
Sbjct: 67 FQAIEEIDFENFKPQLEEYL 86
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D LP + I R++K LP + K+A + + F+SF+TS + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 90 DDLLWAMATLGFEDYIDPLKAYLMRY 115
D+L A+ + + ++ LK +L Y
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTING 89
D P + I + K+ LP + I+KDA +Q + F+S++ S + + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 90 DDLLWAMATLGFEDYI 105
D+ A+ + ++
Sbjct: 94 QDVFVALKDVDLAQFV 109
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 32 YLPIANISRIMKKALPA-------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKR 84
P A + ++ K + A N +AKD+ +Q + F+S + +A + E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 85 KTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115
KTIN D+L A+ F +I +K L +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LP+A + R+++KA ++++DAK + + + E+ I +A++ + RKT+ DD+
Sbjct: 8 LPLAPVERLLRKA--GASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 93 LWAMATL 99
A+ L
Sbjct: 66 KLALREL 72
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LPIA + RI+K A +++ DA+D + + + E I +EA + RKT+ D+
Sbjct: 4 LPIAPVGRIIKNA--GAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASDI 61
Query: 93 LWAM 96
A+
Sbjct: 62 EMAV 65
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LPIA + R+++KA ++++DA + E + E+ ++ +A D + RKT+ +D+
Sbjct: 4 LPIAPVDRLIRKA--GAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 93 LWAM 96
A+
Sbjct: 62 KLAI 65
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92
LPIA I RI+K A +++ DA+ T+ + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 93 LWAM 96
A+
Sbjct: 61 ELAV 64
>sp|Q15878|CAC1E_HUMAN Voltage-dependent R-type calcium channel subunit alpha-1E OS=Homo
sapiens GN=CACNA1E PE=1 SV=3
Length = 2313
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 56 AKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99
+KDT +EC+ ++ ++ K ++ KR + D+++WA+ TL
Sbjct: 1322 SKDTEKECIGNYVDHEKNKMEVKGREWKRHEFHYDNIIWALLTL 1365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,247,343
Number of Sequences: 539616
Number of extensions: 2749333
Number of successful extensions: 4983
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4914
Number of HSP's gapped (non-prelim): 86
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)