Query 030670
Match_columns 173
No_of_seqs 149 out of 582
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 2.5E-31 8.5E-36 216.7 10.7 96 26-122 9-104 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 1.1E-30 3.6E-35 202.6 10.8 97 27-123 4-100 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 3.5E-30 1.2E-34 188.6 11.4 92 26-117 2-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 4.6E-23 1.6E-27 146.1 7.5 69 30-99 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 2.7E-21 9.1E-26 154.3 8.0 75 31-106 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 2.9E-19 9.7E-24 123.3 7.9 66 32-99 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 4.4E-19 1.5E-23 134.3 8.2 87 28-116 3-89 (111)
8 2byk_A Chrac-16; nucleosome sl 99.8 2.6E-19 8.9E-24 140.7 3.5 94 28-122 15-112 (140)
9 1f1e_A Histone fold protein; a 99.7 2.4E-17 8.1E-22 131.5 8.6 72 25-98 75-146 (154)
10 4g92_C HAPE; transcription fac 99.7 2.7E-17 9.3E-22 125.6 7.9 78 27-105 36-113 (119)
11 1n1j_B NF-YC; histone-like PAI 99.7 3E-17 1E-21 121.1 7.0 80 26-106 13-92 (97)
12 2hue_C Histone H4; mini beta s 99.6 3.6E-16 1.2E-20 112.7 7.0 77 26-104 4-80 (84)
13 1id3_B Histone H4; nucleosome 99.6 5.2E-16 1.8E-20 115.9 7.9 78 25-104 21-98 (102)
14 1ku5_A HPHA, archaeal histon; 99.6 5.3E-15 1.8E-19 102.7 7.6 64 32-97 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 6.4E-15 2.2E-19 109.7 8.2 78 25-104 22-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 8.7E-15 3E-19 109.1 7.2 77 26-104 23-99 (103)
17 1jfi_A Transcription regulator 99.4 2.2E-13 7.4E-18 100.7 5.9 77 29-106 8-84 (98)
18 2hue_B Histone H3; mini beta s 98.9 2.5E-09 8.5E-14 76.4 7.4 71 30-100 1-74 (77)
19 1taf_B TFIID TBP associated fa 98.8 1.6E-08 5.4E-13 71.0 8.3 65 31-97 5-69 (70)
20 4dra_A Centromere protein S; D 98.7 2.2E-08 7.6E-13 76.2 7.2 76 37-118 32-108 (113)
21 3nqj_A Histone H3-like centrom 98.7 4E-08 1.4E-12 70.9 8.2 68 31-98 2-74 (82)
22 2yfv_A Histone H3-like centrom 98.7 2E-08 6.8E-13 74.9 6.8 71 26-96 21-97 (100)
23 3v9r_A MHF1, uncharacterized p 98.7 6.2E-08 2.1E-12 71.0 7.4 63 37-99 17-80 (90)
24 3r45_A Histone H3-like centrom 98.6 4.7E-08 1.6E-12 78.0 6.8 72 27-98 72-148 (156)
25 3vh5_A CENP-S; histone fold, c 98.6 6.3E-08 2.2E-12 76.1 7.2 74 37-116 24-98 (140)
26 1tzy_C Histone H3; histone-fol 98.6 8E-08 2.7E-12 75.1 7.1 73 27-99 57-132 (136)
27 3nqu_A Histone H3-like centrom 98.6 6.3E-08 2.2E-12 76.1 6.2 74 27-100 56-134 (140)
28 3b0b_B CENP-S, centromere prot 98.6 1E-07 3.4E-12 71.9 7.0 74 37-116 24-98 (107)
29 2nqb_C Histone H2A; nucleosome 98.5 3.1E-07 1.1E-11 70.4 7.9 69 29-98 20-88 (123)
30 1f66_C Histone H2A.Z; nucleoso 98.5 3.4E-07 1.2E-11 70.7 7.7 70 29-98 24-93 (128)
31 1taf_A TFIID TBP associated fa 98.5 5.6E-07 1.9E-11 62.8 7.9 61 36-98 5-65 (68)
32 1tzy_A Histone H2A-IV; histone 98.5 4.1E-07 1.4E-11 70.3 7.9 70 28-98 21-90 (129)
33 2f8n_G Core histone macro-H2A. 98.5 4.5E-07 1.5E-11 69.3 7.8 70 28-98 18-87 (120)
34 1id3_C Histone H2A.1; nucleoso 98.5 3.6E-07 1.2E-11 70.8 7.3 71 27-98 20-90 (131)
35 2f8n_K Histone H2A type 1; nuc 98.4 7.4E-07 2.5E-11 70.6 7.6 69 29-98 41-109 (149)
36 2ly8_A Budding yeast chaperone 98.4 6.9E-07 2.4E-11 68.6 6.2 55 50-104 63-117 (121)
37 2jss_A Chimera of histone H2B. 98.3 2.1E-06 7.1E-11 69.9 7.8 69 29-97 102-170 (192)
38 2nqb_D Histone H2B; nucleosome 98.2 3.6E-06 1.2E-10 64.8 7.3 63 36-99 37-99 (123)
39 1tzy_B Histone H2B; histone-fo 98.2 5E-06 1.7E-10 64.3 7.2 62 37-99 41-102 (126)
40 2l5a_A Histone H3-like centrom 98.1 2.3E-06 8E-11 72.1 4.2 59 40-100 169-227 (235)
41 4dra_E Centromere protein X; D 98.1 2.3E-05 7.9E-10 56.7 8.6 68 30-97 10-78 (84)
42 2jss_A Chimera of histone H2B. 97.9 3.3E-05 1.1E-09 62.7 8.1 62 36-98 7-68 (192)
43 3b0b_C CENP-X, centromere prot 97.9 5.5E-05 1.9E-09 54.2 8.1 71 27-97 3-74 (81)
44 1h3o_B Transcription initiatio 97.8 9.5E-05 3.2E-09 52.5 8.3 66 32-98 5-70 (76)
45 2l5a_A Histone H3-like centrom 97.4 0.00033 1.1E-08 59.1 6.6 71 30-100 9-85 (235)
46 1bh9_B TAFII28; histone fold, 97.3 0.0011 3.8E-08 48.1 8.1 67 32-100 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 96.5 0.0038 1.3E-07 45.4 5.3 49 32-80 1-50 (88)
48 2ly8_A Budding yeast chaperone 92.5 0.41 1.4E-05 36.4 7.0 84 33-118 2-94 (121)
49 3uk6_A RUVB-like 2; hexameric 91.4 0.43 1.5E-05 39.4 6.6 66 33-98 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 86.2 2.3 8E-05 41.6 8.5 67 29-97 101-167 (1049)
51 1fnn_A CDC6P, cell division co 83.6 4.7 0.00016 32.9 8.1 74 33-106 193-281 (389)
52 2v1u_A Cell division control p 83.3 3.2 0.00011 33.7 6.9 66 35-100 203-277 (387)
53 2c9o_A RUVB-like 1; hexameric 82.6 2.4 8E-05 37.0 6.2 67 32-98 365-436 (456)
54 2qby_A CDC6 homolog 1, cell di 78.3 8.7 0.0003 30.9 7.9 73 33-105 197-278 (386)
55 3kw6_A 26S protease regulatory 74.8 2.6 8.9E-05 28.0 3.2 43 57-99 27-73 (78)
56 3k1j_A LON protease, ATP-depen 72.8 27 0.00092 31.5 10.4 49 50-98 313-374 (604)
57 1khy_A CLPB protein; alpha hel 70.6 11 0.00037 27.2 6.0 37 51-99 5-41 (148)
58 3fh2_A Probable ATP-dependent 69.6 5.6 0.00019 29.2 4.3 36 51-98 6-41 (146)
59 2r44_A Uncharacterized protein 69.2 23 0.00078 28.7 8.3 50 49-98 224-296 (331)
60 2dzn_B 26S protease regulatory 66.7 5.6 0.00019 26.7 3.5 30 71-100 40-69 (82)
61 2qby_B CDC6 homolog 3, cell di 65.7 17 0.00057 29.6 6.8 66 33-100 197-271 (384)
62 3vlf_B 26S protease regulatory 65.6 5.9 0.0002 27.2 3.5 34 68-101 40-73 (88)
63 3aji_B S6C, proteasome (prosom 65.5 5 0.00017 26.8 3.0 33 68-100 40-72 (83)
64 3fes_A ATP-dependent CLP endop 65.2 6.3 0.00022 28.9 3.8 38 50-99 6-43 (145)
65 1g8p_A Magnesium-chelatase 38 65.1 16 0.00054 29.4 6.5 51 49-99 265-322 (350)
66 1k6k_A ATP-dependent CLP prote 64.9 5.4 0.00018 28.8 3.3 33 52-96 2-34 (143)
67 2y1q_A CLPC N-domain, negative 64.6 9.2 0.00031 27.7 4.6 36 51-98 5-40 (150)
68 2krk_A 26S protease regulatory 62.3 6.6 0.00023 27.0 3.2 32 68-99 50-81 (86)
69 1wwi_A Hypothetical protein TT 59.1 25 0.00085 27.5 6.3 59 32-92 2-60 (148)
70 3fes_A ATP-dependent CLP endop 56.0 15 0.00053 26.8 4.5 40 49-100 79-118 (145)
71 2chg_A Replication factor C sm 52.9 21 0.00071 25.8 4.8 63 33-97 161-224 (226)
72 1in4_A RUVB, holliday junction 51.8 42 0.0014 27.6 7.0 68 36-103 183-254 (334)
73 1k6k_A ATP-dependent CLP prote 51.8 38 0.0013 24.1 6.0 37 50-98 78-114 (143)
74 3fh2_A Probable ATP-dependent 51.7 38 0.0013 24.6 6.1 38 50-99 80-117 (146)
75 1r4v_A Hypothetical protein AQ 48.0 30 0.001 27.6 5.2 64 27-92 19-84 (171)
76 3zri_A CLPB protein, CLPV; cha 48.0 14 0.00048 28.5 3.3 37 51-99 24-60 (171)
77 3bos_A Putative DNA replicatio 45.7 67 0.0023 23.7 6.8 60 36-97 177-241 (242)
78 3h4m_A Proteasome-activating n 45.1 19 0.00066 28.2 3.7 33 67-99 226-258 (285)
79 1njg_A DNA polymerase III subu 44.5 32 0.0011 25.0 4.7 63 33-96 185-248 (250)
80 5pal_A Parvalbumin; calcium-bi 44.1 65 0.0022 21.1 6.2 72 33-115 6-89 (109)
81 2i7a_A Calpain 13; calcium-dep 42.9 1E+02 0.0034 22.9 9.8 88 25-113 13-122 (174)
82 2f3n_A SH3 and multiple ankyri 42.7 16 0.00055 24.3 2.5 21 87-107 5-25 (76)
83 3fwb_A Cell division control p 40.7 85 0.0029 21.4 8.5 36 76-111 102-137 (161)
84 1w5s_A Origin recognition comp 40.6 1.1E+02 0.0039 24.7 7.9 68 32-100 214-294 (412)
85 2lfh_A DNA-binding protein inh 39.9 47 0.0016 22.7 4.5 57 12-72 9-66 (68)
86 1uxc_A FRUR (1-57), fructose r 39.9 38 0.0013 22.0 4.0 35 32-67 11-45 (65)
87 2y1q_A CLPC N-domain, negative 39.6 36 0.0012 24.4 4.3 37 50-98 78-114 (150)
88 3bq7_A Diacylglycerol kinase d 38.4 20 0.0007 24.1 2.5 23 86-108 9-31 (81)
89 3zri_A CLPB protein, CLPV; cha 37.6 39 0.0013 25.9 4.4 38 50-99 97-135 (171)
90 1lv7_A FTSH; alpha/beta domain 36.4 36 0.0012 26.4 4.1 64 36-100 185-253 (257)
91 3vfd_A Spastin; ATPase, microt 35.5 1.7E+02 0.0057 24.3 8.3 69 34-102 283-368 (389)
92 4b4t_I 26S protease regulatory 35.0 30 0.001 31.1 3.7 67 31-98 350-422 (437)
93 4b4t_L 26S protease subunit RP 34.8 31 0.0011 30.7 3.7 32 67-98 390-421 (437)
94 1wlm_A Protein CGI-38; structu 34.4 1.4E+02 0.0049 22.9 7.1 54 31-99 35-89 (151)
95 4b4t_M 26S protease regulatory 34.1 31 0.0011 30.6 3.7 33 67-99 390-422 (434)
96 1khy_A CLPB protein; alpha hel 34.0 47 0.0016 23.7 4.1 35 51-97 82-116 (148)
97 4b4t_H 26S protease regulatory 33.8 30 0.001 31.3 3.5 31 68-98 419-449 (467)
98 2d8c_A Phosphatidylcholine:cer 33.3 18 0.00063 25.8 1.7 22 87-108 20-41 (97)
99 3pm8_A PFCDPK2, calcium-depend 33.2 89 0.003 23.1 5.7 70 30-102 19-89 (197)
100 4b4t_J 26S protease regulatory 33.1 37 0.0013 30.1 3.9 32 67-98 357-388 (405)
101 2zbk_B Type 2 DNA topoisomeras 32.4 13 0.00043 34.0 0.8 57 43-99 427-485 (530)
102 2gle_A Neurabin-1; SAM domain, 32.3 23 0.00078 23.2 1.9 21 87-107 7-27 (74)
103 3pvs_A Replication-associated 31.4 81 0.0028 27.5 5.9 67 33-100 165-245 (447)
104 1hqc_A RUVB; extended AAA-ATPa 31.4 62 0.0021 25.6 4.7 71 32-102 167-241 (324)
105 3b9p_A CG5977-PA, isoform A; A 31.1 1.5E+02 0.0052 23.1 7.0 59 51-109 208-282 (297)
106 4b4t_K 26S protease regulatory 31.1 31 0.0011 30.5 3.1 31 68-98 383-413 (428)
107 3pxg_A Negative regulator of g 30.5 73 0.0025 27.7 5.4 38 51-100 5-42 (468)
108 1y1x_A Leishmania major homolo 30.1 1.6E+02 0.0054 21.4 8.7 29 74-102 97-125 (191)
109 1bu3_A Calcium-binding protein 30.1 1.1E+02 0.0039 19.8 6.7 81 32-114 6-89 (109)
110 3d8b_A Fidgetin-like protein 1 29.4 1.2E+02 0.004 25.1 6.3 51 50-100 269-335 (357)
111 1kw4_A Polyhomeotic; SAM domai 29.3 34 0.0012 23.8 2.5 23 86-108 16-39 (89)
112 1tiz_A Calmodulin-related prot 28.3 84 0.0029 18.3 4.0 37 77-113 8-44 (67)
113 2qz4_A Paraplegin; AAA+, SPG7, 28.2 23 0.00078 27.2 1.6 33 67-99 217-249 (262)
114 1bh9_A TAFII18; histone fold, 27.0 1.2E+02 0.0039 18.8 5.9 39 38-77 6-44 (45)
115 3pfi_A Holliday junction ATP-d 26.9 1E+02 0.0034 24.7 5.3 69 34-102 185-257 (338)
116 4ds7_A Calmodulin, CAM; protei 26.4 1.5E+02 0.005 19.7 9.5 41 75-115 89-129 (147)
117 3vlv_A ALGQ1; sugar binding pr 25.6 1.6E+02 0.0054 25.2 6.6 75 49-125 423-499 (502)
118 3mse_B Calcium-dependent prote 25.6 1.9E+02 0.0063 20.7 8.4 28 75-102 44-71 (180)
119 1ixz_A ATP-dependent metallopr 25.1 52 0.0018 25.4 3.2 57 39-96 192-253 (254)
120 2q2e_B Type 2 DNA topoisomeras 24.5 27 0.00091 32.6 1.5 56 43-98 435-492 (621)
121 3fs7_A Parvalbumin, thymic; ca 24.4 1.5E+02 0.0051 19.2 7.9 72 32-114 6-89 (109)
122 1wlz_A DJBP, CAP-binding prote 24.3 1.5E+02 0.0051 19.2 5.7 28 75-102 29-56 (105)
123 2lv7_A Calcium-binding protein 23.8 72 0.0025 21.7 3.4 40 75-114 41-80 (100)
124 2ovk_C Myosin catalytic light 23.6 1.2E+02 0.0043 20.8 4.7 40 74-113 89-128 (159)
125 2lmt_A Calmodulin-related prot 23.4 1.8E+02 0.0062 20.1 5.6 41 74-114 87-127 (148)
126 2kz2_A Calmodulin, CAM; TR2C, 23.2 1.2E+02 0.0041 19.8 4.4 36 77-112 36-71 (94)
127 1ofh_A ATP-dependent HSL prote 23.1 1.1E+02 0.0038 23.7 4.8 52 50-101 233-301 (310)
128 1jr3_A DNA polymerase III subu 22.9 89 0.0031 25.1 4.3 67 32-99 177-244 (373)
129 3bow_A Calpain-2 catalytic sub 22.9 4.2E+02 0.014 24.4 9.3 51 65-115 595-650 (714)
130 1iy2_A ATP-dependent metallopr 22.8 62 0.0021 25.5 3.2 60 37-97 214-278 (278)
131 1rwy_A Parvalbumin alpha; EF-h 22.8 1.3E+02 0.0044 19.5 4.4 79 33-113 6-87 (109)
132 1sxj_D Activator 1 41 kDa subu 22.7 58 0.002 26.0 3.1 68 32-100 191-264 (353)
133 3h4s_E KCBP interacting Ca2+-b 22.7 1.1E+02 0.0036 21.4 4.2 27 75-101 45-71 (135)
134 3pxi_A Negative regulator of g 21.8 1.2E+02 0.0042 27.8 5.4 37 51-99 5-41 (758)
135 3pxg_A Negative regulator of g 20.9 1.9E+02 0.0064 25.1 6.2 55 33-99 55-115 (468)
136 3f8t_A Predicted ATPase involv 20.8 2.9E+02 0.0098 25.3 7.6 66 32-97 393-481 (506)
137 2ahq_A Sigma-54, RNA polymeras 20.8 49 0.0017 22.7 2.0 43 78-124 29-71 (76)
138 1qvr_A CLPB protein; coiled co 20.2 77 0.0026 29.8 3.8 35 51-97 5-39 (854)
139 1r6b_X CLPA protein; AAA+, N-t 20.0 1.7E+02 0.006 26.6 6.0 38 50-99 78-115 (758)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=2.5e-31 Score=216.68 Aligned_cols=96 Identities=35% Similarity=0.641 Sum_probs=90.6
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030670 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (173)
..++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHH
Confidence 5789999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccC
Q 030670 106 DPLKAYLMRYREGDTKG 122 (173)
Q Consensus 106 ~~Lk~~L~~yre~~~~~ 122 (173)
++|+.+|++||+..+.+
T Consensus 88 ~~lk~~L~~yre~~~~k 104 (179)
T 1jfi_B 88 SEVKEVLQECKTVALKR 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999887644
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.1e-30 Score=202.61 Aligned_cols=97 Identities=32% Similarity=0.521 Sum_probs=87.0
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhh
Q 030670 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 106 (173)
+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCC
Q 030670 107 PLKAYLMRYREGDTKGS 123 (173)
Q Consensus 107 ~Lk~~L~~yre~~~~~~ 123 (173)
+|+.+|+.||+..+.+.
T Consensus 84 ~lk~~l~~yr~~~~~kk 100 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKK 100 (128)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999886543
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=3.5e-30 Score=188.59 Aligned_cols=92 Identities=72% Similarity=1.197 Sum_probs=86.1
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030670 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (173)
++++|+.||+|+|.||||+.+|++.+||+||+++|++||++||.||+.+|++.|.+++||||+++||++||+.|||++|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 030670 106 DPLKAYLMRYRE 117 (173)
Q Consensus 106 ~~Lk~~L~~yre 117 (173)
++++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999996
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=4.6e-23 Score=146.15 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=64.7
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 30 D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.+.||+|+|.||||+++| +++||+||+++|++||++||+||+++|++.|.+++||||+++||++|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 468999999999999999 789999999999999999999999999999999999999999999998754
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=2.7e-21 Score=154.29 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=71.9
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhh
Q 030670 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (173)
Q Consensus 31 ~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 106 (173)
..||+++|.||||++||. .+||+||++++++|+++|+.||+++|++.|+++|||||+++||+|||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999996 899999999999999999999999999999999999999999999999999999865
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.79 E-value=2.9e-19 Score=123.34 Aligned_cols=66 Identities=33% Similarity=0.443 Sum_probs=63.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.||+++|.||||+. ++.+||+||+++|++|+++||.+|+.+|++.|.++|||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5789999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.78 E-value=4.4e-19 Score=134.34 Aligned_cols=87 Identities=21% Similarity=0.292 Sum_probs=78.0
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhH
Q 030670 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 28 ~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~ 107 (173)
.+|+.||+++|.||||.. ...+||+|+.+++.+|+.+|+..|+..|...|+++|||||+++||++||++.|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 468899999999999999 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 030670 108 LKAYLMRYR 116 (173)
Q Consensus 108 Lk~~L~~yr 116 (173)
++.++++|.
T Consensus 81 l~~l~~~~l 89 (111)
T 3b0c_T 81 LHVLVERHL 89 (111)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999999994
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.75 E-value=2.6e-19 Score=140.67 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=63.1
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcCchhhHHHHH---hcCCcc
Q 030670 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKC-QKEKRKTINGDDLLWAMA---TLGFED 103 (173)
Q Consensus 28 ~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~-~~~kRKTI~~eDVl~AL~---~LgF~~ 103 (173)
..++.||+|+|.||||.. |+..+||++|..+|++||+.||.||+.+|+..| +..+||||+++||.+|+. .++|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999987 778899999999999999999999999999999 999999999999999998 556666
Q ss_pred hhhHHHHHHHHHHhhhccC
Q 030670 104 YIDPLKAYLMRYREGDTKG 122 (173)
Q Consensus 104 yv~~Lk~~L~~yre~~~~~ 122 (173)
++-|.+.++..|++..+++
T Consensus 94 divP~ki~l~~~~~~~~~~ 112 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLN 112 (140)
T ss_dssp TTSCSCC------------
T ss_pred ccccchhhHHHHHHHHHhc
Confidence 6669999999999887654
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=2.4e-17 Score=131.48 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=68.2
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 25 ~~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
.++.+|+.||+++|.||||+. ...+||+||++.+++|+++|+.+|+++|++.|.+++||||+++||++||+.
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 466788999999999999999 578999999999999999999999999999999999999999999999985
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.70 E-value=2.7e-17 Score=125.59 Aligned_cols=78 Identities=24% Similarity=0.335 Sum_probs=70.6
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030670 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (173)
......||+|+|.||||.. |+..+||+||..+|++|+++||.+|+.+|++.|+.++||||+++||..|++..+..+|+
T Consensus 36 d~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred ccccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 4456679999999999976 77889999999999999999999999999999999999999999999999876655554
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.69 E-value=3e-17 Score=121.05 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=69.3
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchh
Q 030670 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYI 105 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv 105 (173)
....+..||+|+|.||||.. |+..+||+||..++++|++.||.+|+.+|++.|++.+||||+++||..|++..++.+|+
T Consensus 13 ~~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL 91 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFL 91 (97)
T ss_dssp -------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred CCcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHH
Confidence 34566789999999999998 66679999999999999999999999999999999999999999999999988888876
Q ss_pred h
Q 030670 106 D 106 (173)
Q Consensus 106 ~ 106 (173)
.
T Consensus 92 ~ 92 (97)
T 1n1j_B 92 I 92 (97)
T ss_dssp T
T ss_pred H
Confidence 4
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.64 E-value=3.6e-16 Score=112.71 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030670 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (173)
.+.....||+++|.||+|.... .+||+|+.+.+++|+++|+..|+.+|...|++++||||+++||.+||+.+|+.-|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4566778999999999999854 6899999999999999999999999999999999999999999999999998766
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.63 E-value=5.2e-16 Score=115.90 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=71.3
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030670 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 25 ~~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (173)
..+.....||+++|.||++.... .+||+|+.+++++|+++|+..|+.+|.+.|++++||||+++||.+||+.++|.-|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 45778889999999999999854 6899999999999999999999999999999999999999999999999998766
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.57 E-value=5.3e-15 Score=102.74 Aligned_cols=64 Identities=27% Similarity=0.455 Sum_probs=61.4
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
.||+++|.||+|+. +..+||+++.+++++|++.|+..|+..|+..|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 46799999999999999999999999999999999999999999999985
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.57 E-value=6.4e-15 Score=109.72 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030670 25 GVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 25 ~~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (173)
..+.....||+++|.||++.... .+||.|+.+.+++|+++|+..|+.+|...|++++||||+++||.+||+.+|++.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 35777888999999999999865 5899999999999999999999999999999999999999999999999998765
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.54 E-value=8.7e-15 Score=109.10 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=64.1
Q ss_pred CCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030670 26 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (173)
.+.....||+++|.||++.... .+||.|+.+.+.+|++.|+..|+.+|...|++++||||+++||.+||+.+|+..|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 23 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp -------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 4677778999999999999865 5899999999999999999999999999999999999999999999999998765
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.41 E-value=2.2e-13 Score=100.71 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=59.7
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhh
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYID 106 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 106 (173)
-...||+++|.||||.. |+..+||.||..++.++++.|+.+|+..|+..|++.+||||+++||..|+..-+..+|+.
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 34689999999999975 556799999999999999999999999999999999999999999999998665555544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.93 E-value=2.5e-09 Score=76.43 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred cccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 30 DRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 30 D~~LP~A~V~RImK~aLP---~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
++.||++.+.||+|+... .+.+++.+|..++|++++.|+.-|...|+..|.+.||+||.++||--|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999843 36899999999999999999999999999999999999999999999876443
No 19
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.83 E-value=1.6e-08 Score=71.02 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=60.7
Q ss_pred ccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 31 RYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 31 ~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
-.||+++|.+|.++..- .++|.|+...|.+-++..+..|+.+|...+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36999999999999843 489999999999999999999999999999999999999999999985
No 20
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.74 E-value=2.2e-08 Score=76.19 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030670 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 37 ~V~RImK~aLP~-~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.|.||+++.... ++.||+++..+|.+.+..|+.-|+..+...|+++|||||+.+||.-++.+. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 478999998653 577999999999999999999999999999999999999999999999874 5566666666
Q ss_pred Hhh
Q 030670 116 REG 118 (173)
Q Consensus 116 re~ 118 (173)
.+.
T Consensus 106 ~~e 108 (113)
T 4dra_A 106 SEE 108 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 21
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.74 E-value=4e-08 Score=70.93 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=62.2
Q ss_pred ccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 31 RYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 31 ~~LP~A~V~RImK~aLP-----~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
+.||++.+.|++|+... .+.+++.+|..++|++++.|+.-|...|+..|.+.||+||.++||--|..-
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 74 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHH
Confidence 46899999999999872 267999999999999999999999999999999999999999999988754
No 22
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.74 E-value=2e-08 Score=74.87 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=59.6
Q ss_pred CCcccccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030670 26 VREQDRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 26 ~~~~D~~LP~A~V~RImK~aLP~------~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (173)
.+..++.||++.+.||+|+...+ +.+++.+|..+||++++.|+..|...|+..|.+.||+||.++||--|.
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 45678899999999999999732 689999999999999999999999999999999999999999998875
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=6.2e-08 Score=70.96 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=58.8
Q ss_pred HHHHHHHhhCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 37 NISRIMKKALPAN-GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 37 ~V~RImK~aLP~~-~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.|.+|+.+.++.. +.||+++..+|.+.+..|+..|+..+...|+++|||||+++||.-++++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999998865 88999999999999999999999999999999999999999999998763
No 24
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.64 E-value=4.7e-08 Score=78.04 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=63.7
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP-----~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
+..++.||++.+.||+|+... .+.+++.+|.++||++++.|+.-|...|+..|.+.||+||.++||--|+.-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 467889999999999999873 257999999999999999999999999999999999999999999888753
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.64 E-value=6.3e-08 Score=76.10 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=62.9
Q ss_pred HHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030670 37 NISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 37 ~V~RImK~aLP~-~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.|.||+++.... ++.||+++..+|.+.+..|+..|+..+...|++.|||||+.+||.-++.+. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 478899887543 688999999999999999999999999999999999999999999999874 3444444444
Q ss_pred H
Q 030670 116 R 116 (173)
Q Consensus 116 r 116 (173)
.
T Consensus 98 ~ 98 (140)
T 3vh5_A 98 S 98 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.61 E-value=8e-08 Score=75.15 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=66.1
Q ss_pred CcccccCchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 27 REQDRYLPIANISRIMKKALP---ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP---~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
+..++.||++.+.||+++... .+.+++.+|.++||++++.|+..|...|+..|.+.||+||.++||--|..--
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 456789999999999999842 4689999999999999999999999999999999999999999999887643
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.60 E-value=6.3e-08 Score=76.12 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred CcccccCchhHHHHHHHhhCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 27 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP-----~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
...++.||++.+.||+++... .+.+++.+|.++||++++.|+..|...|+..|.+.||+||.++||--|..--|
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 567889999999999999862 26799999999999999999999999999999999999999999999876544
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.60 E-value=1e-07 Score=71.85 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=62.6
Q ss_pred HHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030670 37 NISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 37 ~V~RImK~aLP-~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.|.||+++... .+.++|+++..+|.+.+..|+.-|+..|...|++.|||||+.+||.-|+.+. +.|...|..|
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~ 97 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHH
Confidence 48899998854 2478999999999999999999999999999999999999999999999874 3444444444
Q ss_pred H
Q 030670 116 R 116 (173)
Q Consensus 116 r 116 (173)
.
T Consensus 98 ~ 98 (107)
T 3b0b_B 98 S 98 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.51 E-value=3.1e-07 Score=70.44 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=63.4
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4678999999999999743 24999999999999999999999999999999999999999999999873
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.49 E-value=3.4e-07 Score=70.68 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=64.1
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.-....+|+.+|...|..+.+-|...|...|...|++.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4678999999999999854345999999999999999999999999999999999999999999999874
No 31
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.48 E-value=5.6e-07 Score=62.76 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=56.1
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 36 A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
..|.||+|+.. -.+++.++...|.+.+..++.-|..+|...|.+.|||||+.+||.-|++.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36899999974 35899999999999999999999999999999999999999999999873
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.48 E-value=4.1e-07 Score=70.31 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=63.8
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 28 ~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
--.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|...|...|...|++.+|++|+++||..|+..
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 21 RAGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34689999999999999743 24999999999999999999999999999999999999999999999873
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.47 E-value=4.5e-07 Score=69.29 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=64.0
Q ss_pred cccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 28 EQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 28 ~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
--.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|...|...|...|++.+|++|+++||..|+..
T Consensus 18 ragLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 18 KAGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 34678999999999999854 35999999999999999999999999999999999999999999999873
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.47 E-value=3.6e-07 Score=70.84 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=64.4
Q ss_pred CcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 27 REQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
.--.+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 20 ~ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 20 AKAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GGGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 345689999999999999743 24999999999999999999999999999999999999999999999873
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.40 E-value=7.4e-07 Score=70.58 Aligned_cols=69 Identities=14% Similarity=0.223 Sum_probs=63.4
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
-.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 4678999999999999744 34999999999999999999999999999999999999999999999873
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=6.9e-07 Score=68.63 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcch
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDY 104 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~y 104 (173)
.+||.++.+.+.+..++|+.-|...|...|++.+||||+++||..||+..|-.-|
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4688888888888888888899999999999999999999999999999886544
No 37
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.27 E-value=2.1e-06 Score=69.86 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=63.2
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
..+.||.+.|.|+||+.-....+|+.+|...|..+.+.++..|...|...|++.+|++|+++||..|+.
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 357899999999999973323599999999999999999999999999999999999999999999987
No 38
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.20 E-value=3.6e-06 Score=64.83 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=58.5
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 36 A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.-|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+.+||..|+.-|
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 458999999988 578999999999999999999999999999999999999999999998644
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.15 E-value=5e-06 Score=64.28 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=58.2
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 37 NISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 37 ~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
-|+|++|++-| +..||.+|...|...+..+..-|+.||...|...+|+||+..||..|+.-|
T Consensus 41 YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 69999999988 578999999999999999999999999999999999999999999998644
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.3e-06 Score=72.13 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=53.6
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 40 RIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 40 RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
||++.. +..+||.++.+.+.+..++|+.-|...|...|++.+||||+++||..||+.+|
T Consensus 169 RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 666655 24689999999999999999999999999999999999999999999999765
No 41
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.06 E-value=2.3e-05 Score=56.70 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=61.3
Q ss_pred cccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 30 DRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 30 D~~LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
+..+|...|.||++.... ++.||++||..++.+....||..-...|.+.++.++..+|..+|+-+.+-
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 456899999999998885 57899999999999999999999999999999988999999999988764
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.91 E-value=3.3e-05 Score=62.75 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=58.1
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 36 ANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 36 A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
.-|+|++|+.-| +..||.+|...|...+..+..-|+.+|...+...+|+||+.+||..|++-
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 458999999988 57899999999999999999999999999999999999999999999963
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.90 E-value=5.5e-05 Score=54.25 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=61.7
Q ss_pred CcccccCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 27 REQDRYLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 27 ~~~D~~LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
++.+..+|...|.||++.... +..||++||..++.+....||..-...|...++.++-..|..+|+-+.+-
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 455778999999999999887 47899999999999999999999999999999989999999999988664
No 44
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.83 E-value=9.5e-05 Score=52.50 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=61.9
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
-|++..+..++++.-| +..+..|+.++|.+.|.+||.-++..|...|++.+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999866 78999999999999999999999999999999999999999999988874
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00033 Score=59.08 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=61.4
Q ss_pred cccCchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 30 DRYLPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 30 D~~LP~A~V~RImK~aLP~------~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
.+.+|+....|++++...+ +.++..+|..+||++++.|+--|-..++--|.+.||.||.+.|+--|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4678888999998887543 5799999999999999999999999999999999999999999999976443
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.32 E-value=0.0011 Score=48.10 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=60.4
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcCchhhHHHHHhcC
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~k-RKTI~~eDVl~AL~~Lg 100 (173)
.||++.|.|||...+. ..|+.+...+|.-.+.+||-.|..+|.+++.+.+ +.-|.+.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 6999999999999985 5899999999999999999999999999998775 55899999999987664
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0038 Score=45.44 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=41.0
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030670 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQ 80 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~ 80 (173)
.||...|.||++.... ++.||++||..++++....||..-...|.+..+
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke 50 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHK 50 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999997765 478999999999999999999877777765443
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.41 Score=36.41 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=55.4
Q ss_pred CchhHHHHHHHhhC----C--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcCchhhHHHHHhcCCcc
Q 030670 33 LPIANISRIMKKAL----P--ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKE---KRKTINGDDLLWAMATLGFED 103 (173)
Q Consensus 33 LP~A~V~RImK~aL----P--~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~---kRKTI~~eDVl~AL~~LgF~~ 103 (173)
+|+....|++++.. + .+.+++.+|..+||++++.|+--|-..+|--|.+. |-|-|+.+ +...+.. -+.+
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~~ 79 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLKS 79 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHHH
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHHH
Confidence 56666666666542 2 26899999999999999999999998887665554 45667764 5554422 1334
Q ss_pred hhhHHHHHHHHHHhh
Q 030670 104 YIDPLKAYLMRYREG 118 (173)
Q Consensus 104 yv~~Lk~~L~~yre~ 118 (173)
|.+.+-...-.|-+.
T Consensus 80 ~l~~i~rdav~yaeh 94 (121)
T 2ly8_A 80 FLESVIRDSVTYTEH 94 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555554444455554
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.43 E-value=0.43 Score=39.38 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=50.1
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
++...+..|++..+. .+..++.++.+.+.+.+. -.+..+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456667777775543 246799999999988876 244555666778888889999999999999986
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=86.17 E-value=2.3 Score=41.64 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=53.0
Q ss_pred ccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 29 QDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 29 ~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
..+.+|...|.|++|.... -||+..|..-+.-..+-....|..-|...|+..+++.|++.||..|+.
T Consensus 101 ~~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CCccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 3578999999999977664 489998888777665555555555666777888999999999999986
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.59 E-value=4.7 Score=32.89 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred CchhHHHHHHHhhCCC---CCcccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 33 LPIANISRIMKKALPA---NGKIAKDAKDTVQECV------------SEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 33 LP~A~V~RImK~aLP~---~~kISkDA~~al~k~a------------~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
|+...+..+++..+.. ...++.++.+.+.+.+ --++..+...|...|..+++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3445666666655432 2469999999888887 234555666777888888899999999999998
Q ss_pred hcCCcchhh
Q 030670 98 TLGFEDYID 106 (173)
Q Consensus 98 ~LgF~~yv~ 106 (173)
......+..
T Consensus 273 ~~~~~~~~~ 281 (389)
T 1fnn_A 273 EVLFGISEE 281 (389)
T ss_dssp HHSCCCCHH
T ss_pred HHhhhhHHH
Confidence 776544433
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.27 E-value=3.2 Score=33.71 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=50.6
Q ss_pred hhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 35 IANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 35 ~A~V~RImK~aLP---~~~kISkDA~~al~k~a~------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
...+..|++..+. ....++.++.+.+.+.+. -.+..+...|...|..+++.+|+.+||..|++.+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 5667777765432 145799999998888876 45556667778888888999999999999998764
No 53
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.63 E-value=2.4 Score=37.04 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=49.8
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECV-S---EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a-~---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
.++...+..+++..+. .+..++.++...+.+.+ . .....|...|...|..+++.+|+.+||..|+.-
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3555667777765432 24569999998888877 2 245556677888899999999999999999864
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.31 E-value=8.7 Score=30.94 Aligned_cols=73 Identities=7% Similarity=0.074 Sum_probs=52.1
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcc
Q 030670 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS------EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (173)
Q Consensus 33 LP~A~V~RImK~aLP---~~~kISkDA~~al~k~a~------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~ 103 (173)
|....+..|++..+. ....++.++...+.+.+. ..+..+...|...+..+++.+|+.+||..|++.+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445667777765332 135789999888888776 23444666788888888899999999999998775443
Q ss_pred hh
Q 030670 104 YI 105 (173)
Q Consensus 104 yv 105 (173)
+.
T Consensus 277 ~~ 278 (386)
T 2qby_A 277 VR 278 (386)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.84 E-value=2.6 Score=27.99 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 57 KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 57 ~~al~k~a~eF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.+.|.+.+.-| |..|..+|.-.|..+++..|+.+|+..||+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34455544444 67777888888888899999999999999753
No 56
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=72.80 E-value=27 Score=31.53 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=39.5
Q ss_pred CcccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 50 GKIAKDAKDTVQECVS-------------EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~kISkDA~~al~k~a~-------------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
..++.+|...|.+.+. .-+.-|...|...|..+++.+|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4699999998888653 234455667888999999999999999999964
No 57
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=70.56 E-value=11 Score=27.19 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
+++..++.+|.. |.+.|...+...|.++|++.||=+-
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcC
Confidence 678888888865 7788899999999999999998543
No 58
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=69.61 E-value=5.6 Score=29.19 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
++|..++.+|+. |.+.|+..+...|.++|++.||=+
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHh
Confidence 578888888865 778899999999999999999864
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.15 E-value=23 Score=28.66 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 49 NGKIAKDAKDTVQECVSEF-----------------------ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 49 ~~kISkDA~~al~k~a~eF-----------------------I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
++.|+.++.+.+.+.+... ...+...|...|.-.+|..|+.+||..|+..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5668888888777655322 1233445566677789999999999998874
No 60
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=66.66 E-value=5.6 Score=26.75 Aligned_cols=30 Identities=33% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 71 ITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 71 LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
|..+|.-.|.++++..|+.+|+..|++..-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 334566677777889999999999998763
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=65.70 E-value=17 Score=29.64 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=46.0
Q ss_pred CchhHHHHHHHhhCC---CCCcccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 33 LPIANISRIMKKALP---ANGKIAKDAKDTVQECVS---E---FISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 33 LP~A~V~RImK~aLP---~~~kISkDA~~al~k~a~---e---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
|....+..|++..+. ....++.++.+.+.+.+. - .+..+...|...|. ++.+|+.+||..|++.+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777776432 135799999888888776 1 23344455666665 678999999999998764
No 62
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=65.64 E-value=5.9 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030670 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (173)
|.-|..+|.-.|.+.++..|+.+|+..|++..-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5666677777888888999999999999987644
No 63
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=65.53 E-value=5 Score=26.79 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
|..|..+|.-.|...++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445666788888888899999999999998653
No 64
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=65.16 E-value=6.3 Score=28.94 Aligned_cols=38 Identities=11% Similarity=0.242 Sum_probs=31.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
-+++..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 6 ~~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 6 NRFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 3688888888865 7788999999999999999998643
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.07 E-value=16 Score=29.40 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=39.4
Q ss_pred CCcccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 49 NGKIAKDAKDTVQECVSE-------FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 49 ~~kISkDA~~al~k~a~e-------FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.+.+++++.+.|.+.+.. -+..+...|...|..++|.+|+.+||..|+...
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 458999999999887653 344555667777888899999999999988643
No 66
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=64.88 E-value=5.4 Score=28.77 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030670 52 IAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 52 ISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (173)
+|++++++|+. |.+.|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56677777754 7788888899999999999998
No 67
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=64.64 E-value=9.2 Score=27.73 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
+++..++++|+. |.+.|...+...|.++|++.||=+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~ 40 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVR 40 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHh
Confidence 678888888865 778888889999999999999853
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=62.31 E-value=6.6 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 68 ISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
|.-|..+|.-.|.++.+..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456677777888889999999999999753
No 69
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=59.08 E-value=25 Score=27.50 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=50.8
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhh
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDV 92 (173)
-+|.+.+.|+++.+.. .-|.|+-..-+...++.=+.-|.-.|.+.|+.++|.+|...|+
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 3678889999999964 5577888888888888888888889999999999999999886
No 70
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=55.96 E-value=15 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 49 NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 49 ~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
...+|.++..+|.+ |...|+..+...|+.+||+.||-.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 34588888888766 67778888999999999999986543
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=52.91 E-value=21 Score=25.84 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=39.9
Q ss_pred CchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 33 LPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 33 LP~A~V~RImK~aLP~-~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
++...+..+++..+.. +..++.++...+.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666666654421 3458898888887766544444444443444333 7999999999875
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.83 E-value=42 Score=27.60 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=45.6
Q ss_pred hHHHHHHHhhCC-CCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCcc
Q 030670 36 ANISRIMKKALP-ANGKIAKDAKDTVQECVS---EFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFED 103 (173)
Q Consensus 36 A~V~RImK~aLP-~~~kISkDA~~al~k~a~---eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~~ 103 (173)
..+..|++.... -+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 455566654321 135688888887766432 23344445666777777888999999999999887653
No 73
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=51.75 E-value=38 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=29.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
..+|..+..+|.+ |...++..+...|+.+|++.||-.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567777776655 677788888999999999999954
No 74
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=51.69 E-value=38 Score=24.55 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
..+|.++..+|.+ |...|+..+...|+.+||+.||-.-
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 4688888888876 6677888899999999999998643
No 75
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=48.05 E-value=30 Score=27.63 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=54.3
Q ss_pred Ccccc--cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhh
Q 030670 27 REQDR--YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDL 92 (173)
Q Consensus 27 ~~~D~--~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDV 92 (173)
.++.. -+|.+.+.||++.+.. .-|.|+-..-+...++.=+.-|.-.|.+.|+.++|.+|...|+
T Consensus 19 ~~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 19 KIETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp --CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 44555 7899999999999965 5688888888889898888888889999999999999999886
No 76
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=48.02 E-value=14 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
+++..++.+|+. |.+.|...+-..|.++|++.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 577888888865 6778888899999999999998543
No 77
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=45.68 E-value=67 Score=23.67 Aligned_cols=60 Identities=2% Similarity=0.020 Sum_probs=36.0
Q ss_pred hHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 36 ANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 36 A~V~RImK~aLP-~~~kISkDA~~al~k~a~----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
..+.++++..+. .+..++.++.+.+.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 444455554332 245789999888877654 3333333 3444454444 5699999998875
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=45.13 E-value=19 Score=28.21 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
-|.-|..+|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 456677788888888999999999999999754
No 79
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=44.46 E-value=32 Score=24.98 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=40.7
Q ss_pred CchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030670 33 LPIANISRIMKKALP-ANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 33 LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (173)
|+...+..+++..+. .+..++.++.+.+.+.+.--..++-...... ...++++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~-~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA-IASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH-HTTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-HhccCceecHHHHHHHh
Confidence 445566666665442 2357899998888887765555554444333 33445689999998876
No 80
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=44.06 E-value=65 Score=21.06 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=46.1
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCCcCchhhHHHHHhc---C
Q 030670 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFIT---------SEASDKCQKEKRKTINGDDLLWAMATL---G 100 (173)
Q Consensus 33 LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~Lt---------seA~~~~~~~kRKTI~~eDVl~AL~~L---g 100 (173)
++...|.++++..=. +..|+-+- |+..+. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~e----------F~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKR----------FFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHH----------HHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHH----------HHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887644 55676432 222221 234555666778899999999999988 6
Q ss_pred CcchhhHHHHHHHHH
Q 030670 101 FEDYIDPLKAYLMRY 115 (173)
Q Consensus 101 F~~yv~~Lk~~L~~y 115 (173)
..--.+.++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 75 RDLNDTETKALLAAG 89 (109)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 654445555555443
No 81
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=42.91 E-value=1e+02 Score=22.86 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=47.7
Q ss_pred CCCcccccCchhHHHHHHHhhCCC---CCcccHHHHH-HHHHH---------HHHHHHHHH-----HHHHHHHHhcCCCC
Q 030670 25 GVREQDRYLPIANISRIMKKALPA---NGKIAKDAKD-TVQEC---------VSEFISFIT-----SEASDKCQKEKRKT 86 (173)
Q Consensus 25 ~~~~~D~~LP~A~V~RImK~aLP~---~~kISkDA~~-al~k~---------a~eFI~~Lt-----seA~~~~~~~kRKT 86 (173)
+....+-.|...-+..+++...+. ...++.+... ++... -.+|+..+. .+|....- ++.-+
T Consensus 13 ~~~~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G~ 91 (174)
T 2i7a_A 13 GLVPRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGV 91 (174)
T ss_dssp CSCC-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTTB
T ss_pred ccCCCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCCc
Confidence 344455556666666666654221 1233433222 22221 135554443 34666666 77789
Q ss_pred cCchhhHHHHHhc----CCcchhhHHHHHHH
Q 030670 87 INGDDLLWAMATL----GFEDYIDPLKAYLM 113 (173)
Q Consensus 87 I~~eDVl~AL~~L----gF~~yv~~Lk~~L~ 113 (173)
|+.+++..+|..+ |+.-=-+.++..+.
T Consensus 92 I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 92 LLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp EEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 9999999999999 87532233444443
No 82
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=42.71 E-value=16 Score=24.35 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=17.9
Q ss_pred cCchhhHHHHHhcCCcchhhH
Q 030670 87 INGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 87 I~~eDVl~AL~~LgF~~yv~~ 107 (173)
=+++||..-|+.+||++|++.
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~ 25 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDR 25 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHH
Confidence 368899999999999988765
No 83
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=40.75 E-value=85 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHH
Q 030670 76 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 111 (173)
Q Consensus 76 ~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~ 111 (173)
....-.++.-.|+.+++..+|..+|..--.+.++..
T Consensus 102 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 102 FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 344445566789999999999988865333334333
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.57 E-value=1.1e+02 Score=24.72 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=49.3
Q ss_pred cCchhHHHHHHHhh----CCCCCcccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 32 YLPIANISRIMKKA----LPANGKIAKDAKDTVQECVS---------EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 32 ~LP~A~V~RImK~a----LP~~~kISkDA~~al~k~a~---------eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
.|....+..|++.. .+ ...++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34556677777543 22 23588888888888777 367777777888888888999999999988876
Q ss_pred cC
Q 030670 99 LG 100 (173)
Q Consensus 99 Lg 100 (173)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 64
No 85
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.92 E-value=47 Score=22.68 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCC-CCCCcccccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHH
Q 030670 12 SHESGGEQSPHA-GGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFIT 72 (173)
Q Consensus 12 ~~~~~~~~~~~~-~~~~~~D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~Lt 72 (173)
||-+||.-++.. .-.+..++.--.+.+.+++=. +|.+-++|| ..+-+.|..||.+|.
T Consensus 9 ~~~~~~~~~a~erER~Rm~~lN~aF~~LR~~VP~-~p~~kKLSK---iEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 9 SHMGGGKGPAAEEPLSLLDDMNHCYSRLRELVPG-VPRGTQLSQ---VEILQRVIDYILDLQ 66 (68)
T ss_dssp CCSSCCCCCCBCCCSCSSSHHHHHHHHHHHHCCC-CCTTCCCCH---HHHHHHHHHHHHHHH
T ss_pred hccCCCCCCccHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCccH---HHHHHHHHHHHHHHH
Confidence 444444444432 122334444444444444332 244668887 777788888888875
No 86
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=39.89 E-value=38 Score=22.05 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=26.1
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF 67 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eF 67 (173)
.+..++|.|++...- ....|+.|.++.|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 577899999998542 11269999999988887665
No 87
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=39.56 E-value=36 Score=24.41 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
..+|..+..+|.. |...|+.-+...|+.+|++.||-.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 3567776666654 677777778999999999999853
No 88
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=38.41 E-value=20 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.3
Q ss_pred CcCchhhHHHHHhcCCcchhhHH
Q 030670 86 TINGDDLLWAMATLGFEDYIDPL 108 (173)
Q Consensus 86 TI~~eDVl~AL~~LgF~~yv~~L 108 (173)
.-+++||..-|+.+||++|++..
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F 31 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIF 31 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHH
Confidence 45789999999999999987654
No 89
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=37.64 E-value=39 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcCchhhHHHHHhc
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQ-KEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~-~~kRKTI~~eDVl~AL~~L 99 (173)
..+|.++..+|++ |...|+ +-+...|+.+||+.||-.-
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4588888888876 778888 8899999999999998543
No 90
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.41 E-value=36 Score=26.35 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=38.9
Q ss_pred hHHHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 36 ANISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 36 A~V~RImK~aLP~~~kISkDA-~~al~k~a~----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
.....|++..+. ...++.++ ...+.+... .=|..+..+|...|...++++|+.+||..|+++.-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344455555443 23344443 233333222 13445566777888888899999999999998653
No 91
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=35.49 E-value=1.7e+02 Score=24.33 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=44.7
Q ss_pred chhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCCcCchhhHHHH
Q 030670 34 PIANISRIMKKALPA-NGKIAKDAKDTVQECVSE----FISFITSEASDKCQKE------------KRKTINGDDLLWAM 96 (173)
Q Consensus 34 P~A~V~RImK~aLP~-~~kISkDA~~al~k~a~e----FI~~LtseA~~~~~~~------------kRKTI~~eDVl~AL 96 (173)
+......|++..+.. +..++.+....|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 344555666655432 356888888777776543 4555666666555544 45689999999999
Q ss_pred HhcCCc
Q 030670 97 ATLGFE 102 (173)
Q Consensus 97 ~~LgF~ 102 (173)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 876543
No 92
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.01 E-value=30 Score=31.09 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=42.2
Q ss_pred ccCchh-HHHHHHHhhCCCCCcccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 31 RYLPIA-NISRIMKKALPANGKIAKDA-KDTVQECVS----EFISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 31 ~~LP~A-~V~RImK~aLP~~~kISkDA-~~al~k~a~----eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
+.+|-. .-..|++-.+. .+.++.|. .+.|.+.+. -=|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 345532 23345554443 34455442 344444332 336677788888898999999999999999874
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.76 E-value=31 Score=30.68 Aligned_cols=32 Identities=31% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
=|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35667778888888899999999999999874
No 94
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.39.1.11
Probab=34.38 E-value=1.4e+02 Score=22.90 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=37.4
Q ss_pred ccCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 31 RYLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 31 ~~LP~A~V~RImK~aLP~-~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
..|--++..+++|++-== +-+|+.-..+++ ...++..+.++|+.++.+.||+.|
T Consensus 35 ~~M~~~~f~Kl~kD~~lidgk~~T~tdvDii---------------F~KvK~k~~rkI~f~qF~~aL~~l 89 (151)
T 1wlm_A 35 QEMNGKNWAKLCKDCKVADGKAVTGTDVDIV---------------FSKVKAKSARVINYEEFKKALEEL 89 (151)
T ss_dssp SEEEHHHHHHHHHHTSCCCSSSSCHHHHHHH---------------HHHHSCSSCSEEEHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHCCCCcCCCCChhhccee---------------hheeccCccceecHHHHHHHHHHH
Confidence 568889999999998321 245665544443 233444557789999999999865
No 95
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.07 E-value=31 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
=|..|..+|.-.|.+++++.|+.+|+..|++..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 366777788888888899999999999999754
No 96
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=34.00 E-value=47 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
.+|..+..++.+ |...++..+...|+.+|++.||-
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 356665555544 66777777889999999999986
No 97
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.76 E-value=30 Score=31.34 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
|.-|..+|.-.|.+++|+.|+.+|+..|+++
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5667788888888899999999999999875
No 98
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=33.34 E-value=18 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=19.6
Q ss_pred cCchhhHHHHHhcCCcchhhHH
Q 030670 87 INGDDLLWAMATLGFEDYIDPL 108 (173)
Q Consensus 87 I~~eDVl~AL~~LgF~~yv~~L 108 (173)
-+.+||..-|+.+||++|++..
T Consensus 20 Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 20 WSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp CCTTHHHHHHHHTTCTTTTTTT
T ss_pred CCHHHHHHHHHHcCCHHHHHHH
Confidence 4899999999999999999765
No 99
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=33.15 E-value=89 Score=23.10 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=37.1
Q ss_pred cccCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 30 DRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEF-ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 30 D~~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eF-I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
+..|....+.|+-+=. ...++.+.+...+.+..+.- +..| .++....-.++.-+|+.+++..+|..+|+.
T Consensus 19 ~~~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 89 (197)
T 3pm8_A 19 HVELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQ 89 (197)
T ss_dssp SCCCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCC
Confidence 3445556666655432 22345555544443322211 1111 123344445677789999999999988875
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.07 E-value=37 Score=30.06 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 67 FISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888888999999999999999874
No 101
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=32.40 E-value=13 Score=34.05 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=41.5
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC--chhhHHHHHhc
Q 030670 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMATL 99 (173)
Q Consensus 43 K~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~L 99 (173)
|+++.+.--|-+|.+.+|++||...=.||.......-..++++++. -.+|..+|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334434468899999999999999999998766665555555554 46778888753
No 102
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=32.27 E-value=23 Score=23.17 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=17.2
Q ss_pred cCchhhHHHHHhcCCcchhhH
Q 030670 87 INGDDLLWAMATLGFEDYIDP 107 (173)
Q Consensus 87 I~~eDVl~AL~~LgF~~yv~~ 107 (173)
=+.+||..-|+.+||++|++.
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~ 27 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSE 27 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHH
Confidence 478999999999998877553
No 103
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.44 E-value=81 Score=27.55 Aligned_cols=67 Identities=10% Similarity=0.234 Sum_probs=44.5
Q ss_pred CchhHHHHHHHhhCC--------CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCCcCchhhHHHHHh
Q 030670 33 LPIANISRIMKKALP--------ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKE--KRKTINGDDLLWAMAT 98 (173)
Q Consensus 33 LP~A~V~RImK~aLP--------~~~kISkDA~~al~k~a~----eFI~~LtseA~~~~~~~--kRKTI~~eDVl~AL~~ 98 (173)
++...+..|++..+. ....|+.++.+.|.+.+. ..++.|- .|...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 566777777776654 246699999999988753 3333332 333444322 5678999999999986
Q ss_pred cC
Q 030670 99 LG 100 (173)
Q Consensus 99 Lg 100 (173)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 104
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.42 E-value=62 Score=25.59 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=45.5
Q ss_pred cCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 32 YLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEF---ISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~-~~kISkDA~~al~k~a~eF---I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
.++...+..+++..+.. +..++.++.+.|.+.+.-. +..+...+...|...++..|+.+|+..++..+...
T Consensus 167 ~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 167 YYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 34556666666665432 4579999988888765222 22333334444555567889999999999876643
No 105
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.13 E-value=1.5e+02 Score=23.09 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCCcCchhhHHHHHhcCCcchhhHHH
Q 030670 51 KIAKDAKDTVQECVSE----FISFITSEASDKCQKEK------------RKTINGDDLLWAMATLGFEDYIDPLK 109 (173)
Q Consensus 51 kISkDA~~al~k~a~e----FI~~LtseA~~~~~~~k------------RKTI~~eDVl~AL~~LgF~~yv~~Lk 109 (173)
.++.++...+.+.+.- -+..|..+|.-.+.++. ...|+.+|+..|++...-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4778777777765543 33455555555554432 36899999999998876544444433
No 106
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.08 E-value=31 Score=30.54 Aligned_cols=31 Identities=35% Similarity=0.292 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcCchhhHHHHHh
Q 030670 68 ISFITSEASDKCQKEKRKTINGDDLLWAMAT 98 (173)
Q Consensus 68 I~~LtseA~~~~~~~kRKTI~~eDVl~AL~~ 98 (173)
|..|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6777788888888999999999999999864
No 107
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=30.49 E-value=73 Score=27.71 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcC
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~Lg 100 (173)
+++..++.+|.. |.+.|...+...|..+|+|.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 688888888865 77889999999999999999996543
No 108
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=30.11 E-value=1.6e+02 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 74 EASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
.+....-.++.-+|+.+++..+|..+|+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 34455555677789999999999988864
No 109
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=30.08 E-value=1.1e+02 Score=19.78 Aligned_cols=81 Identities=16% Similarity=0.035 Sum_probs=44.7
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHH
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPL 108 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~L 108 (173)
.+....|.+|++..- .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSAD-DIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 456677888888754 4566775321111100000000 01234455556777889999999999998 554333444
Q ss_pred HHHHHH
Q 030670 109 KAYLMR 114 (173)
Q Consensus 109 k~~L~~ 114 (173)
+..+..
T Consensus 84 ~~~~~~ 89 (109)
T 1bu3_A 84 KAFLKA 89 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 110
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=29.39 E-value=1.2e+02 Score=25.12 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------------cCCCCcCchhhHHHHHhcC
Q 030670 50 GKIAKDAKDTVQECVSE----FISFITSEASDKCQK------------EKRKTINGDDLLWAMATLG 100 (173)
Q Consensus 50 ~kISkDA~~al~k~a~e----FI~~LtseA~~~~~~------------~kRKTI~~eDVl~AL~~Lg 100 (173)
..++.++.+.+.+.+.- -|..|..+|.-.+.+ ...+.|+.+|+..||+...
T Consensus 269 ~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 45778777777765432 455566666544443 3457899999999998654
No 111
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=29.28 E-value=34 Score=23.78 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.9
Q ss_pred CcCchhhHHHHHhc-CCcchhhHH
Q 030670 86 TINGDDLLWAMATL-GFEDYIDPL 108 (173)
Q Consensus 86 TI~~eDVl~AL~~L-gF~~yv~~L 108 (173)
.-+.+||..-|+.+ ||++|++..
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F 39 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDF 39 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHH
Confidence 45789999999999 998887653
No 112
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=28.33 E-value=84 Score=18.27 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030670 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
...-.++.-.|+.+++..+|..+|..--.+.++..+.
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444556667888888888888876533334444333
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=28.22 E-value=23 Score=27.17 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 67 FISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 67 FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
-|.-|..+|...|..+++++|+.+|+..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 345556667777777788899999999888754
No 114
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=26.96 E-value=1.2e+02 Score=18.78 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 030670 38 ISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASD 77 (173)
Q Consensus 38 V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~ 77 (173)
|..+|-.-. +...-..|...+|.+.+.+||..++.+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555665443 345678899999999999999999998864
No 115
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.91 E-value=1e+02 Score=24.70 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=46.4
Q ss_pred chhHHHHHHHhhCC-CCCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 34 PIANISRIMKKALP-ANGKIAKDAKDTVQECVSE---FISFITSEASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 34 P~A~V~RImK~aLP-~~~kISkDA~~al~k~a~e---FI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
+...+..|++..+. .+..++.++.+.+.+.+.- .+..+...+...|...++.+|+.+|+..++..+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 35555556555432 1356899998888875322 233334455567777788899999999999987764
No 116
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=26.36 E-value=1.5e+02 Score=19.75 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030670 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
+....-.++.-.|+.+++..+|..+|..-=-+.++..+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 34445456778899999999999998654445555555544
No 117
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=25.56 E-value=1.6e+02 Score=25.17 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--CchhhHHHHHhcCCcchhhHHHHHHHHHHhhhccCCCC
Q 030670 49 NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTI--NGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSAR 125 (173)
Q Consensus 49 ~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI--~~eDVl~AL~~LgF~~yv~~Lk~~L~~yre~~~~~~~k 125 (173)
...++.|-.+.+....+..-.++.......-. ++.-+ .-+..++-|+.+|++++++.....+++|++...+.+.|
T Consensus 423 ~~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i~--G~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~~~~~~~ 499 (502)
T 3vlv_A 423 GVNLTVEEREIYDKYWPDVKTYMFEMGQSWVM--GTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGAAKPAQV 499 (502)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhccCchhc
Confidence 45666654444444444444444332222222 22333 25667888999999999999999999998766554444
No 118
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=25.55 E-value=1.9e+02 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
+...+-.++.-+|+.+++..+|..+|+.
T Consensus 44 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 44 LFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3445556677899999999999999986
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=25.09 E-value=52 Score=25.35 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=33.7
Q ss_pred HHHHHhhCCCCCcccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCchhhHHHH
Q 030670 39 SRIMKKALPANGKIAKDA-KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAM 96 (173)
Q Consensus 39 ~RImK~aLP~~~kISkDA-~~al~k~a~eF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL 96 (173)
.+|++..+. ...++.|+ ...+.+.+.-| |.-+..+|...|...++.+|+.+|+..|+
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 445554332 23444443 34444443322 33445566677777888999999999886
No 120
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=24.52 E-value=27 Score=32.65 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=41.2
Q ss_pred HhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC--chhhHHHHHh
Q 030670 43 KKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTIN--GDDLLWAMAT 98 (173)
Q Consensus 43 K~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~--~eDVl~AL~~ 98 (173)
|+++.+.--|-+|.+.+|++||...=.||.......-++++++++. -.+|..+|..
T Consensus 435 ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 435 KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544468999999999999999999998777666666666665 3566666654
No 121
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=24.35 E-value=1.5e+02 Score=19.19 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=44.8
Q ss_pred cCchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCCcCchhhHHHHHhc---
Q 030670 32 YLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFI---------TSEASDKCQKEKRKTINGDDLLWAMATL--- 99 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~L---------tseA~~~~~~~kRKTI~~eDVl~AL~~L--- 99 (173)
.++...|.++++..= .+..|+-+ +|+..+ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 456677888888753 45667653 222222 2234455556777899999999999998
Q ss_pred CCcchhhHHHHHHHH
Q 030670 100 GFEDYIDPLKAYLMR 114 (173)
Q Consensus 100 gF~~yv~~Lk~~L~~ 114 (173)
|..--.+.++..+..
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 3fs7_A 75 ARVLTSAETKAFLAA 89 (109)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 554334444444433
No 122
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=24.33 E-value=1.5e+02 Score=19.18 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCc
Q 030670 75 ASDKCQKEKRKTINGDDLLWAMATLGFE 102 (173)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~ 102 (173)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4455556677889999999999998875
No 123
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.81 E-value=72 Score=21.73 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHH
Q 030670 75 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (173)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (173)
|....-.++.-+|+.+++..+|..+|+.-=-+.++..++.
T Consensus 41 ~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 41 AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566667788899999999999999985333445544443
No 124
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=23.63 E-value=1.2e+02 Score=20.76 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHH
Q 030670 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 113 (173)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~ 113 (173)
.|....-.++.-+|+.+++..+|..+|..-=-+.++..+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455555667778999999999999986433334444443
No 125
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=23.36 E-value=1.8e+02 Score=20.05 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHH
Q 030670 74 EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 114 (173)
Q Consensus 74 eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~ 114 (173)
.|....-.++.-+|+.+++..+|..+|..--...++..+..
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 45566667778899999999999999886555555555443
No 126
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=23.20 E-value=1.2e+02 Score=19.79 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=24.2
Q ss_pred HHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHH
Q 030670 77 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 112 (173)
Q Consensus 77 ~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L 112 (173)
...-.++.-+|+.+++..+|..+|..-=.+.++..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344456677899999999999998753333344433
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.12 E-value=1.1e+02 Score=23.67 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-CcCchhhHHHHHhcCC
Q 030670 50 GKIAKDAKDTVQECVSE------------FISFITSE----ASDKCQKEKRK-TINGDDLLWAMATLGF 101 (173)
Q Consensus 50 ~kISkDA~~al~k~a~e------------FI~~Ltse----A~~~~~~~kRK-TI~~eDVl~AL~~LgF 101 (173)
..++.++.+.|.+.+.. ....|-.. +.+.+..++++ +|+.+||..+++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46999999998887632 22222221 11222222322 5999999999986643
No 128
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.89 E-value=89 Score=25.05 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=38.0
Q ss_pred cCchhHHHHHHHhhCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 32 YLPIANISRIMKKALPA-NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP~-~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
.++...+..+++..+.. +..++.++...+.+.+.--+..+.......+ .....+|+.+||..++...
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~-~~~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHH-HHTTTCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcCCcccHHHHHHHhCCC
Confidence 35566677777654421 4578999888887765443333333322222 2234678888887665433
No 129
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=22.89 E-value=4.2e+02 Score=24.41 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHH-----HHHHHHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHH
Q 030670 65 SEFISFITS-----EASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 115 (173)
Q Consensus 65 ~eFI~~Lts-----eA~~~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~y 115 (173)
.||+.++.. .+....-.++.-+|+.+++..+|..+|+.--.+.++..+..|
T Consensus 595 ~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~~El~~~L~~~G~~ls~~~~~~l~~~~ 650 (714)
T 3bow_A 595 KEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARF 650 (714)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHTTEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 456555443 344555567778999999999999998754334444444444
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.78 E-value=62 Score=25.50 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCCCcccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 37 NISRIMKKALPANGKIAKDA-KDTVQECVSEF----ISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 37 ~V~RImK~aLP~~~kISkDA-~~al~k~a~eF----I~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
....|++..+. ...++.|+ ...+.+.+.-| |.-+..+|...|..+++.+|+.+||..|++
T Consensus 214 ~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 214 GREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 33455554433 33455444 34444433222 334455666777778888999999998863
No 131
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=22.76 E-value=1.3e+02 Score=19.47 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=42.2
Q ss_pred CchhHHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc---CCcchhhHHH
Q 030670 33 LPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLK 109 (173)
Q Consensus 33 LP~A~V~RImK~aLP~~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~Lk 109 (173)
+....|.++++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSAD-DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETK 83 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHH-HHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHH
Confidence 45567778887643 4556665322111100000000 11234555556777889999999999998 4433333344
Q ss_pred HHHH
Q 030670 110 AYLM 113 (173)
Q Consensus 110 ~~L~ 113 (173)
..+.
T Consensus 84 ~~~~ 87 (109)
T 1rwy_A 84 TLMA 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 132
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.73 E-value=58 Score=25.99 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=41.4
Q ss_pred cCchhHHHHHHHhhCC-CCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC-CCCcCchhhHHHHHhcC
Q 030670 32 YLPIANISRIMKKALP-ANGKIAKDAKDTVQECVS----EFISFITSEASDKCQKEK-RKTINGDDLLWAMATLG 100 (173)
Q Consensus 32 ~LP~A~V~RImK~aLP-~~~kISkDA~~al~k~a~----eFI~~LtseA~~~~~~~k-RKTI~~eDVl~AL~~Lg 100 (173)
.++...+..+++..+. .+..|+.++.+.+.+.+. ..++.|-.. ...+...+ ++.|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~-~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA-SKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHT-HHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-HHhcCCCccCccccHHHHHHHhCCCC
Confidence 3455556666655432 356799999888887643 344444332 23333333 33899999999887544
No 133
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=22.66 E-value=1.1e+02 Score=21.36 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCCcCchhhHHHHHhcCC
Q 030670 75 ASDKCQKEKRKTINGDDLLWAMATLGF 101 (173)
Q Consensus 75 A~~~~~~~kRKTI~~eDVl~AL~~LgF 101 (173)
|....-.++.-.|+.+++..+|..+|+
T Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 45 GFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 445555667778888888888888886
No 134
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.83 E-value=1.2e+02 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
+++..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 688888888865 7788999999999999999998654
No 135
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.91 E-value=1.9e+02 Score=25.07 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred CchhHHHHHHHhhCCC------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 33 LPIANISRIMKKALPA------NGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 33 LP~A~V~RImK~aLP~------~~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
+-...|.+.+...+.. ...+|..++.+|.. |...|..-+...|..+|||.||-.-
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3345555655555532 24578888888866 6677778899999999999998643
No 136
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=20.85 E-value=2.9e+02 Score=25.32 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=37.6
Q ss_pred cCchhHHHHHHHhhC--CCCCcccHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHhcCCCCcC
Q 030670 32 YLPIANISRIMKKAL--PANGKIAKDAKDTVQECVSEFI---------------------SFITSEASDKCQKEKRKTIN 88 (173)
Q Consensus 32 ~LP~A~V~RImK~aL--P~~~kISkDA~~al~k~a~eFI---------------------~~LtseA~~~~~~~kRKTI~ 88 (173)
.++...+.+.+.-+= --...+++++.+.|.+....-= ..|-..|--.|+-.+|..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 466666666555431 0134788888877766533221 12333444556666777777
Q ss_pred chhhHHHHH
Q 030670 89 GDDLLWAMA 97 (173)
Q Consensus 89 ~eDVl~AL~ 97 (173)
.+||..|+.
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
No 137
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=20.76 E-value=49 Score=22.73 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHHhcCCCCcCchhhHHHHHhcCCcchhhHHHHHHHHHHhhhccCCC
Q 030670 78 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREGDTKGSA 124 (173)
Q Consensus 78 ~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~Lk~~L~~yre~~~~~~~ 124 (173)
+...++++.++.+.|...|+.-|+. --+..+.+||+...-.++
T Consensus 29 I~~Ed~~kPlSD~~I~~~L~~~Gi~----IaRRTVaKYRe~l~Ip~s 71 (76)
T 2ahq_A 29 VENEDKRKPYSDQEIANILKEKGFK----VARRTVAKYREMLGIPSS 71 (76)
T ss_dssp GGGCCSSSCCCHHHHHHHHTTTSSC----CCHHHHHHHHHHTC----
T ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC----ccHHHHHHHHHHcCCCch
Confidence 3456678999999999999988774 456788999988765543
No 138
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.25 E-value=77 Score=29.78 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHH
Q 030670 51 KIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMA 97 (173)
Q Consensus 51 kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~ 97 (173)
+++..+..+|.. |.+.|...+...|.++|++.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 678888888865 77888888999999999999984
No 139
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.03 E-value=1.7e+02 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchhhHHHHHhc
Q 030670 50 GKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATL 99 (173)
Q Consensus 50 ~kISkDA~~al~k~a~eFI~~LtseA~~~~~~~kRKTI~~eDVl~AL~~L 99 (173)
..+|..++.+|++ |...++..+...|+.+||+.||-.-
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 3577777777766 5666666788999999999998543
Done!