BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030671
         (173 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P44428|FER_HAEIN 2Fe-2S ferredoxin OS=Haemophilus influenzae (strain ATCC 51907 /
           DSM 11121 / KW20 / Rd) GN=fdx PE=3 SV=2
          Length = 113

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 16/88 (18%)

Query: 93  DNKIELYATYGKVMN--CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESW---- 146
           DN +E+    G  ++  C G  +C TC V + +G D LNE ++ E   L K   +W    
Sbjct: 25  DNLLEVAHNAGVEIHHACDGSCACTTCHVIVREGFDSLNETSDQEEDMLDK---AWGLEM 81

Query: 147 --RLACQTIVGNKENSGKVVVQRIPQWK 172
             RL+CQ +VGN++     +V  IP++ 
Sbjct: 82  DSRLSCQCVVGNED-----LVVEIPKYN 104


>sp|A6V3A2|NQRF_PSEA7 Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
           aeruginosa (strain PA7) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 82  SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
           +G KLL+ +  +N     A       CGGGG+C  C   ++DG     E   TE  +  +
Sbjct: 51  AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVDGG---GEMLPTEESHFTR 100

Query: 142 KP--ESWRLACQTIV 154
           +   E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115


>sp|O68988|CSMI_CHLTE Chlorosome protein I OS=Chlorobium tepidum (strain ATCC 49652 / DSM
           12025 / TLS) GN=csmI PE=1 SV=1
          Length = 244

 Score = 39.3 bits (90), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 99  YATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYL--KKKPESWRLACQTIVGN 156
           +A  G V  CGG G C  C + + +G D L   T+ E  +L  ++     R+ACQ  +  
Sbjct: 26  HAHVGYV--CGGHGLCQACYITVQEGADCLAPLTDVEKAFLSPRQIAAGGRIACQATIA- 82

Query: 157 KENSGKVV 164
           KE + KV+
Sbjct: 83  KEGTVKVL 90


>sp|Q02PF8|NQRF_PSEAB Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 39.3 bits (90), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 82  SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
           +G KLL+ +  +N     A       CGGGG+C  C   +++G     E   TE  +  +
Sbjct: 51  AGGKLLQTLATNNVFLSSA-------CGGGGTCAQCKCVVVEGG---GEMLPTEESHFTR 100

Query: 142 KP--ESWRLACQTIV 154
           +   E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115


>sp|Q9HZL1|NQRF_PSEAE Na(+)-translocating NADH-quinone reductase subunit F OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 39.3 bits (90), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 82  SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK 141
           +G KLL+ +  +N     A       CGGGG+C  C   +++G     E   TE  +  +
Sbjct: 51  AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVEGG---GEMLPTEESHFTR 100

Query: 142 KP--ESWRLACQTIV 154
           +   E WRL+CQT V
Sbjct: 101 RQAKEGWRLSCQTPV 115


>sp|Q255Y6|NQRF_CHLFF Na(+)-translocating NADH-quinone reductase subunit F
           OS=Chlamydophila felis (strain Fe/C-56) GN=nqrF PE=3
           SV=1
          Length = 431

 Score = 38.5 bits (88), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 108 CGGGGSCGTCIVEIIDGKD--LLNERTNTELRYLKKKPESWRLACQTIVGNKEN 159
           CGG  +C  C V+I+ G D  L  +R     R L+   + WRL+CQT V +  N
Sbjct: 76  CGGKATCKQCKVKIVKGADQPLETDRATFSKRQLE---QGWRLSCQTKVQHDMN 126


>sp|O68983|CSMJ_CHLTE Chlorosome protein J OS=Chlorobium tepidum (strain ATCC 49652 / DSM
           12025 / TLS) GN=csmJ PE=4 SV=1
          Length = 225

 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154
           CGG G C +C V +++G + L+E    E  ++  K   E  RLAC+T +
Sbjct: 33  CGGNGICQSCFVYVLEGAECLSEPGEDEKAFISDKLFAEGGRLACRTTI 81


>sp|Q605A0|NQRF_METCA Na(+)-translocating NADH-quinone reductase subunit F
           OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
           11132 / Bath) GN=nqrF PE=3 SV=1
          Length = 407

 Score = 37.0 bits (84), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154
           CGGGG+C  C V++++G     E   TEL ++ K+   +  RL+CQ  V
Sbjct: 68  CGGGGTCAQCRVQVLEGG---GEILPTELSHITKREAAQGDRLSCQVTV 113


>sp|D5ARY7|FER4_RHOCB Ferredoxin-4 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
           16581 / SB1003) GN=fdxC PE=3 SV=1
          Length = 95

 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 112 GSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ 151
           G CGTC+  I++G + L+E T  E+R L++    +  RLACQ
Sbjct: 41  GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQ 82


>sp|P0CY92|FER4_RHOCA Ferredoxin-4 OS=Rhodobacter capsulatus GN=fdxC PE=3 SV=1
          Length = 95

 Score = 36.2 bits (82), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 112 GSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQ 151
           G CGTC+  I++G + L+E T  E+R L++    +  RLACQ
Sbjct: 41  GECGTCMTHILEGSENLSEPTALEMRVLEENLGGKDDRLACQ 82


>sp|P59799|FER5_AQUAE 2Fe-2S ferredoxin-5 OS=Aquifex aeolicus (strain VF5) GN=fdx5 PE=1
           SV=2
          Length = 96

 Score = 33.9 bits (76), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 79  KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRY 138
           + I  E +++ I+  N IE+ +       CGG G C +C V II G + L      E   
Sbjct: 14  EGIENETIMQ-ILYRNGIEIDSA------CGGHGQCTSCKVLIISGSENLYPAEFEEKDT 66

Query: 139 LKKK---PESWRLACQTIVGNKENSGKVVV 165
           L++    PE+ RL+CQ  +  K   G VV+
Sbjct: 67  LEENGMDPETERLSCQAKLNGK---GDVVI 93


>sp|Q9PLI3|NQRF_CHLMU Probable Na(+)-translocating NADH-quinone reductase subunit F
           OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nqrF PE=3
           SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 78  AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
            K +   K L + +LD+ I + +       CGG  +C  C + I    D  L  +R+   
Sbjct: 52  TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKIRITKNVDEPLETDRSTFS 105

Query: 136 LRYLKKKPESWRLACQTIVGNKEN 159
            + L+   + WRL+CQT V +  N
Sbjct: 106 KQQLE---QGWRLSCQTKVQHDMN 126


>sp|O67065|FER1_AQUAE Ferredoxin-1 OS=Aquifex aeolicus (strain VF5) GN=fdx1 PE=1 SV=1
          Length = 96

 Score = 33.1 bits (74), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 112 GSCGTCIVEIIDGKDLLNE---RTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQ 166
           G CG C+  +I G + LNE        L  +    E  RL CQ ++  KE+  ++V++
Sbjct: 37  GQCGVCVARVIKGMECLNEPSEEEEETLWRVGAVDEDQRLTCQLVI-EKEDCDEIVIE 93


>sp|Q821Q3|NQRF_CHLCV Na(+)-translocating NADH-quinone reductase subunit F
           OS=Chlamydophila caviae (strain GPIC) GN=nqrF PE=3 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 108 CGGGGSCGTCIVEIIDGKD--LLNERTNTELRYLKKKPESWRLACQTIV 154
           CGG  +C  C V+I+   D  L  +R     + L+   + WRL+CQT V
Sbjct: 76  CGGKATCKQCKVKIVKNADQPLETDRATFSKQQLE---QGWRLSCQTKV 121


>sp|Q3KKV3|NQRF_CHLTA Na(+)-translocating NADH-quinone reductase subunit F OS=Chlamydia
           trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
           GN=nqrF PE=3 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 78  AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
            K +   K L + +LD+ I + +       CGG  +C  C V I    D  L  +R+   
Sbjct: 52  TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKVRITKNADEPLETDRSTFS 105

Query: 136 LRYLKKKPESWRLACQTIVGN 156
            + L+   + WRL+CQT V +
Sbjct: 106 KQQLE---QGWRLSCQTKVQH 123


>sp|O84745|NQRF_CHLTR Probable Na(+)-translocating NADH-quinone reductase subunit F
           OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nqrF PE=3
           SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 78  AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKD--LLNERTNTE 135
            K +   K L + +LD+ I + +       CGG  +C  C V I    D  L  +R+   
Sbjct: 52  TKTVDSGKTLLSSLLDSGIAIPSP------CGGKAACKQCKVRITKNADEPLETDRSTFS 105

Query: 136 LRYLKKKPESWRLACQTIVGN 156
            + L+   + WRL+CQT V +
Sbjct: 106 KQQLE---QGWRLSCQTKVQH 123


>sp|P21149|FER_TRIVA Ferredoxin OS=Trichomonas vaginalis PE=1 SV=1
          Length = 100

 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 107 NCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKV 163
            C G  +CG CI + + GK       + E  +L+ +P + RLAC  I  + EN G V
Sbjct: 45  TCQGNKACGKCICKHVSGK---VAAEDDEKEFLEDQPANARLAC-AITLSGENDGAV 97


>sp|Q9LCJ4|NQRF_PSEHA Na(+)-translocating NADH-quinone reductase subunit F (Fragment)
           OS=Pseudoalteromonas haloplanktis GN=nqrF PE=3 SV=1
          Length = 303

 Score = 32.0 bits (71), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 111 GGSCGTCIVEIID-GKDLLNERTNTELRYLKKKP--ESWRLACQTIVGN 156
           GGSCG C V I + G D+L     TEL ++ K    E  RLACQ  V N
Sbjct: 1   GGSCGQCRVHIKEGGGDIL----PTELDHISKGEAREGCRLACQVNVKN 45


>sp|A6VW13|NQRF_MARMS Na(+)-translocating NADH-quinone reductase subunit F OS=Marinomonas
           sp. (strain MWYL1) GN=nqrF PE=3 SV=1
          Length = 408

 Score = 32.0 bits (71), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
           CGGGG+C  C  ++  G        +TE  +  ++   E +RL+CQ  V
Sbjct: 70  CGGGGTCAQCKCKVTSGG---GSMLSTEQSHFTRRDEKEGYRLSCQVSV 115


>sp|Q2MGH6|GH101_STRPN Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
            serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_0368 PE=1
            SV=1
          Length = 1767

 Score = 31.6 bits (70), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 44   NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
            ++T+P +P  EKPE +L  +A   G    Y  E A+  + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLRSLASEQGKTPDYKQEIARPETPEQIL 1735


>sp|Q9LCI7|NQRF_SHEPU Na(+)-translocating NADH-quinone reductase subunit F (Fragment)
           OS=Shewanella putrefaciens GN=nqrF PE=3 SV=1
          Length = 301

 Score = 31.6 bits (70), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 111 GGSCGTCIVEIID-GKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
           GGSCG C V+I   G D+L     TE+ ++ KK   E  RLACQ  V
Sbjct: 1   GGSCGQCRVKIKSGGGDIL----PTEMGHITKKEAKEGCRLACQVAV 43


>sp|Q8DR60|GH101_STRR6 Endo-alpha-N-acetylgalactosaminidase OS=Streptococcus pneumoniae
            (strain ATCC BAA-255 / R6) GN=spr0328 PE=1 SV=1
          Length = 1767

 Score = 31.6 bits (70), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 44   NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLL 87
            ++T+P +P  EKPE +L  +A   G    Y  E A+  + E++L
Sbjct: 1692 SATKPDAPTVEKPEFKLSSVASDQGKTPDYKQEIARPETPEQIL 1735


>sp|Q99KW3|TARA_MOUSE TRIO and F-actin-binding protein OS=Mus musculus GN=Triobp PE=1 SV=3
          Length = 2014

 Score = 31.2 bits (69), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 19/91 (20%)

Query: 83   GEKLLRN-----IMLDNKIELYATYGKVMNCGGGGSCG------TCIVEIIDGKDLLNER 131
            G++LLR+       L  +I+   ++  + + G G SCG      +C +E+     LL  +
Sbjct: 1887 GQELLRHNQELHSHLSEEIDRLRSF--IASQGTGNSCGRSNERSSCELEV-----LLRVK 1939

Query: 132  TNTELRYLKKKPESWRLACQTIVGNKENSGK 162
             N EL+YLKK+ +  R   Q I  +K  +GK
Sbjct: 1940 EN-ELQYLKKEVQCLRDELQVIQKDKRFTGK 1969


>sp|A0M791|ATPB_GRAFK ATP synthase subunit beta OS=Gramella forsetii (strain KT0803)
           GN=atpD PE=3 SV=1
          Length = 503

 Score = 31.2 bits (69), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 65  PRAGDDGSYPVERAK------AISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCI 118
           P+AG+DG  P+ R        ++S E L   I + + IE Y+  GK+   GG G   T +
Sbjct: 108 PKAGEDG-LPIHRQAPKFEDLSVSTEVLFTGIKVIDLIEPYSKGGKIGLFGGAGVGKTVL 166

Query: 119 VE 120
           ++
Sbjct: 167 IQ 168


>sp|P00259|PUTX_PSEPU Putidaredoxin OS=Pseudomonas putida GN=camB PE=1 SV=3
          Length = 107

 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 102 YGKVMNCGGGGSCGTCIVEI----IDGKDLLNERTNTELRYLKK--KPESWRLACQTIVG 155
           Y  V +CGG  SC TC V +     D     NER    L  +    KP S RL CQ I+ 
Sbjct: 34  YDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLECVTAELKPNS-RLCCQIIM- 91

Query: 156 NKENSGKVVVQRIPQW 171
             E  G VV     QW
Sbjct: 92  TPELDGIVVDVPDRQW 107


>sp|Q4FPV2|NQRF_PSYA2 Na(+)-translocating NADH-quinone reductase subunit F
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=nqrF PE=3 SV=1
          Length = 411

 Score = 30.4 bits (67), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
           CGGGG+C  C   +I+G   +     TE  Y  +       RLACQ  V
Sbjct: 72  CGGGGTCAQCRCRVIEGGGSI---LPTEEGYFTQGEIRNHMRLACQVAV 117


>sp|Q1Q7Z7|NQRF_PSYCK Na(+)-translocating NADH-quinone reductase subunit F
           OS=Psychrobacter cryohalolentis (strain K5) GN=nqrF PE=3
           SV=1
          Length = 411

 Score = 30.4 bits (67), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 108 CGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKP--ESWRLACQTIV 154
           CGGGG+C  C   +I+G   +     TE  Y  +       RLACQ  V
Sbjct: 72  CGGGGTCAQCRCRVIEGGGSI---LPTEEGYFTQGEIRNHMRLACQVAV 117


>sp|Q17G65|SMG8_AEDAE Protein SMG8 OS=Aedes aegypti GN=AAEL003157 PE=3 SV=1
          Length = 916

 Score = 29.6 bits (65), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 18  ELCLRRSSFKSKLSSPRRPKFVSFAVNSTEPSSPEPEKPEIELEFI-APRAGDDG 71
           E  +  +S  S  S PR  KFV F+ +S   S P  +  ++ +E++  P AG  G
Sbjct: 223 EFIITNNSAMSLFSIPRSKKFVFFSSDSKAKSDPLLDSIDMLMEYLDKPAAGQQG 277


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,402,452
Number of Sequences: 539616
Number of extensions: 2995200
Number of successful extensions: 5912
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5860
Number of HSP's gapped (non-prelim): 75
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)