Query 030671
Match_columns 173
No_of_seqs 165 out of 1278
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3309 Ferredoxin [Energy pro 99.9 2E-21 4.3E-26 153.7 9.1 122 26-163 13-139 (159)
2 PTZ00490 Ferredoxin superfamil 99.8 1.1E-20 2.4E-25 148.7 12.3 102 55-171 33-139 (143)
3 PLN02593 adrenodoxin-like ferr 99.8 1.5E-20 3.2E-25 143.1 11.2 97 58-169 1-102 (117)
4 TIGR02007 fdx_isc ferredoxin, 99.8 5.4E-19 1.2E-23 132.7 9.4 83 76-169 16-101 (110)
5 COG0633 Fdx Ferredoxin [Energy 99.7 8.6E-18 1.9E-22 125.0 7.8 77 77-166 16-94 (102)
6 CHL00134 petF ferredoxin; Vali 99.7 8.5E-17 1.8E-21 118.8 9.3 76 76-169 17-94 (99)
7 TIGR02008 fdx_plant ferredoxin 99.7 8.9E-17 1.9E-21 118.0 8.5 76 76-169 15-92 (97)
8 PLN03136 Ferredoxin; Provision 99.7 2.9E-16 6.3E-21 124.3 9.1 90 56-170 53-144 (148)
9 PRK10713 2Fe-2S ferredoxin Yfa 99.7 8.2E-16 1.8E-20 110.3 9.4 72 77-167 12-84 (84)
10 PTZ00038 ferredoxin; Provision 99.6 1.2E-15 2.5E-20 125.3 9.2 89 56-169 94-184 (191)
11 PRK05464 Na(+)-translocating N 99.6 3.2E-15 7E-20 133.4 11.0 92 54-168 32-125 (409)
12 TIGR01941 nqrF NADH:ubiquinone 99.6 3.7E-15 8E-20 132.9 10.5 78 76-168 42-121 (405)
13 cd00207 fer2 2Fe-2S iron-sulfu 99.6 1.3E-14 2.8E-19 101.5 7.1 73 76-166 10-84 (84)
14 PRK11872 antC anthranilate dio 99.5 3.8E-14 8.2E-19 123.7 9.1 76 77-168 16-93 (340)
15 PRK07609 CDP-6-deoxy-delta-3,4 99.5 8.1E-14 1.7E-18 120.7 9.0 77 76-168 12-90 (339)
16 PRK05713 hypothetical protein; 99.5 5.4E-14 1.2E-18 121.1 7.6 75 76-168 9-85 (312)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.5 6.1E-14 1.3E-18 97.6 4.8 69 76-155 8-78 (78)
18 PRK10684 HCP oxidoreductase, N 99.4 3.2E-13 7E-18 117.1 8.7 72 76-165 258-331 (332)
19 COG2871 NqrF Na+-transporting 99.4 2.8E-13 6.1E-18 118.0 6.8 76 77-167 48-125 (410)
20 TIGR02160 PA_CoA_Oxy5 phenylac 99.4 8.6E-13 1.9E-17 114.8 8.5 71 78-166 277-350 (352)
21 COG3894 Uncharacterized metal- 99.3 2.7E-12 5.9E-17 117.9 6.5 75 81-170 15-89 (614)
22 PF13085 Fer2_3: 2Fe-2S iron-s 99.1 1.6E-10 3.5E-15 87.5 5.8 91 57-171 1-95 (110)
23 PLN00129 succinate dehydrogena 99.0 8E-10 1.7E-14 95.4 7.5 100 48-171 34-136 (276)
24 PRK13552 frdB fumarate reducta 98.9 2.1E-09 4.5E-14 90.8 6.4 90 58-171 7-97 (239)
25 COG0479 FrdB Succinate dehydro 98.8 1E-08 2.2E-13 86.8 6.0 90 57-171 4-93 (234)
26 PRK12575 succinate dehydrogena 98.8 1.2E-08 2.7E-13 86.0 6.2 88 58-171 7-95 (235)
27 PRK08640 sdhB succinate dehydr 98.8 1.1E-08 2.4E-13 86.9 5.8 87 58-170 8-101 (249)
28 PRK12385 fumarate reductase ir 98.8 7.5E-09 1.6E-13 87.6 4.5 88 58-170 9-96 (244)
29 PRK06259 succinate dehydrogena 98.7 2.2E-08 4.8E-13 91.2 7.5 83 58-169 6-88 (486)
30 PRK12577 succinate dehydrogena 98.7 5E-08 1.1E-12 85.8 8.6 87 58-170 5-101 (329)
31 PRK07569 bidirectional hydroge 98.7 4.5E-08 9.7E-13 82.0 7.0 54 76-155 11-69 (234)
32 PRK12576 succinate dehydrogena 98.7 1.1E-07 2.4E-12 82.0 9.0 88 57-170 10-100 (279)
33 PF13510 Fer2_4: 2Fe-2S iron-s 98.6 3.6E-08 7.8E-13 70.5 4.4 66 57-155 3-72 (82)
34 PRK05950 sdhB succinate dehydr 98.6 1.1E-07 2.4E-12 79.5 7.6 89 57-169 1-90 (232)
35 PRK12386 fumarate reductase ir 98.6 1.8E-07 3.8E-12 79.9 7.5 76 72-170 18-93 (251)
36 TIGR00384 dhsB succinate dehyd 98.5 1E-07 2.3E-12 79.0 4.0 74 72-170 13-87 (220)
37 PRK07570 succinate dehydrogena 98.5 2.1E-07 4.6E-12 79.3 5.1 93 58-169 5-103 (250)
38 PRK08166 NADH dehydrogenase su 98.2 2.3E-06 5E-11 83.1 6.9 59 76-155 9-72 (847)
39 PRK12814 putative NADPH-depend 97.7 6.6E-05 1.4E-09 71.2 6.4 54 76-155 11-69 (652)
40 PRK08493 NADH dehydrogenase su 97.7 0.00012 2.6E-09 71.7 7.3 57 76-155 9-65 (819)
41 PRK11433 aldehyde oxidoreducta 97.7 0.00025 5.5E-09 59.6 8.3 43 76-125 61-103 (217)
42 PTZ00305 NADH:ubiquinone oxido 97.6 0.00017 3.8E-09 63.0 6.7 54 53-125 64-123 (297)
43 PRK07860 NADH dehydrogenase su 97.4 0.00031 6.6E-09 68.3 6.8 64 55-155 2-70 (797)
44 TIGR01973 NuoG NADH-quinone ox 97.4 0.00029 6.3E-09 66.1 5.5 55 76-155 6-65 (603)
45 PRK09130 NADH dehydrogenase su 97.2 0.00074 1.6E-08 64.9 6.4 41 76-123 9-54 (687)
46 PRK09129 NADH dehydrogenase su 97.1 0.00079 1.7E-08 65.0 5.9 62 76-167 9-75 (776)
47 TIGR03193 4hydroxCoAred 4-hydr 96.8 0.003 6.6E-08 50.3 5.8 42 76-125 11-53 (148)
48 COG1034 NuoG NADH dehydrogenas 96.8 0.0034 7.4E-08 60.6 6.8 47 76-124 9-55 (693)
49 KOG3049 Succinate dehydrogenas 96.7 0.0079 1.7E-07 51.2 7.9 90 57-170 48-139 (288)
50 PRK09908 xanthine dehydrogenas 96.7 0.0055 1.2E-07 49.3 6.3 42 76-125 18-59 (159)
51 COG3383 Uncharacterized anaero 96.2 0.009 1.9E-07 58.4 5.9 42 76-125 13-59 (978)
52 TIGR03198 pucE xanthine dehydr 95.7 0.025 5.4E-07 45.1 5.5 40 76-122 13-53 (151)
53 PRK09800 putative hypoxanthine 94.9 0.04 8.7E-07 55.1 5.2 43 76-125 12-54 (956)
54 COG2080 CoxS Aerobic-type carb 94.9 0.078 1.7E-06 42.6 5.9 42 76-125 13-55 (156)
55 TIGR03313 Se_sel_red_Mo probab 93.6 0.079 1.7E-06 53.0 4.2 42 76-125 8-50 (951)
56 TIGR03311 Se_dep_Molyb_1 selen 93.2 0.12 2.6E-06 51.0 4.7 41 77-125 9-50 (848)
57 TIGR01372 soxA sarcosine oxida 92.9 0.45 9.6E-06 47.6 8.3 83 55-171 10-97 (985)
58 PRK00054 dihydroorotate dehydr 92.5 0.11 2.5E-06 43.1 3.0 35 89-124 198-232 (250)
59 TIGR02963 xanthine_xdhA xanthi 92.4 0.18 3.9E-06 46.7 4.5 40 76-122 10-51 (467)
60 cd06218 DHOD_e_trans FAD/NAD b 91.5 0.27 5.8E-06 40.9 4.2 34 89-123 197-230 (246)
61 cd06219 DHOD_e_trans_like1 FAD 91.2 0.19 4.2E-06 41.7 3.0 32 89-121 197-228 (248)
62 PRK06222 ferredoxin-NADP(+) re 91.1 0.2 4.4E-06 42.6 3.2 35 86-122 196-230 (281)
63 PRK08345 cytochrome-c3 hydroge 90.6 0.14 3E-06 43.8 1.7 39 84-124 225-266 (289)
64 TIGR02969 mam_aldehyde_ox alde 89.6 0.45 9.8E-06 49.3 4.6 39 77-122 14-53 (1330)
65 KOG2282 NADH-ubiquinone oxidor 89.2 0.6 1.3E-05 44.4 4.7 46 76-124 40-86 (708)
66 cd06220 DHOD_e_trans_like2 FAD 89.2 0.28 6.1E-06 40.3 2.3 36 85-122 181-216 (233)
67 cd06221 sulfite_reductase_like 88.4 0.29 6.2E-06 40.9 1.9 34 85-120 204-240 (253)
68 PRK05802 hypothetical protein; 88.0 0.6 1.3E-05 40.9 3.7 33 89-122 271-305 (320)
69 TIGR02911 sulfite_red_B sulfit 86.6 0.38 8.2E-06 40.6 1.6 31 89-120 207-240 (261)
70 PRK08221 anaerobic sulfite red 85.3 0.43 9.2E-06 40.3 1.3 31 89-120 209-242 (263)
71 PLN00192 aldehyde oxidase 84.9 1.4 3.1E-05 45.8 5.0 39 77-122 16-56 (1344)
72 cd06192 DHOD_e_trans_like FAD/ 83.9 1 2.2E-05 37.0 2.9 33 89-122 195-229 (243)
73 PRK12778 putative bifunctional 78.9 1.8 4E-05 41.9 3.1 32 89-121 198-229 (752)
74 PF10418 DHODB_Fe-S_bind: Iron 74.3 1.8 3.8E-05 27.0 1.1 19 105-124 3-21 (40)
75 PRK12779 putative bifunctional 70.6 4.3 9.2E-05 40.9 3.4 33 89-122 864-896 (944)
76 COG4630 XdhA Xanthine dehydrog 69.5 8.2 0.00018 35.7 4.6 37 79-122 22-59 (493)
77 PLN02906 xanthine dehydrogenas 66.8 5.8 0.00013 41.4 3.5 33 84-123 2-34 (1319)
78 PRK12775 putative trifunctiona 64.6 5.8 0.00012 40.2 3.0 33 89-122 198-230 (1006)
79 KOG0430 Xanthine dehydrogenase 40.2 30 0.00064 36.1 3.4 39 79-123 16-54 (1257)
80 PRK01777 hypothetical protein; 38.5 87 0.0019 22.9 4.9 24 75-99 18-41 (95)
81 PRK06567 putative bifunctional 29.9 23 0.00049 36.4 0.8 30 95-125 961-990 (1028)
82 PF09791 Oxidored-like: Oxidor 21.9 61 0.0013 21.0 1.5 14 107-121 17-30 (48)
83 PF03658 Ub-RnfH: RnfH family 20.9 54 0.0012 23.7 1.1 21 76-97 16-36 (84)
84 cd01760 RBD Ubiquitin-like dom 20.7 1.3E+02 0.0028 20.9 3.0 16 76-92 12-27 (72)
No 1
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.85 E-value=2e-21 Score=153.69 Aligned_cols=122 Identities=27% Similarity=0.384 Sum_probs=97.3
Q ss_pred ccccccCCCCcceeeeee-cCCCCCCCCCCCCcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCC
Q 030671 26 FKSKLSSPRRPKFVSFAV-NSTEPSSPEPEKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK 104 (173)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~ 104 (173)
+|-..+-+.+.|..+... ++ .+.++.+...|+|+|+++ ||+. ..+++..|+||| +++.++||++++
T Consensus 13 ~~~a~~~~~~~f~~~~t~~~~--~~~~~~~~e~i~Itfv~~----dG~~--~~i~g~vGdtlL-d~ah~n~idleG---- 79 (159)
T KOG3309|consen 13 SRLAPFTRNHIFRTSSTSEFS--PSKGPRKVEDIKITFVDP----DGEE--IKIKGKVGDTLL-DAAHENNLDLEG---- 79 (159)
T ss_pred hhccccccceeeccCcccccc--cccCCCCCceEEEEEECC----CCCE--EEeeeecchHHH-HHHHHcCCCccc----
Confidence 344445555555553322 22 233444556699999986 4432 577999999999 999999999999
Q ss_pred cCCCCCceeecCcEEEEecCc-ccCCCCChHHHhccCCC---CCCeEEeeeeEeeecCCCccE
Q 030671 105 VMNCGGGGSCGTCIVEIIDGK-DLLNERTNTELRYLKKK---PESWRLACQTIVGNKENSGKV 163 (173)
Q Consensus 105 ~~~C~G~G~CGTC~V~V~~G~-~~l~~~t~~E~~~L~~~---~~g~RLaCQ~~v~~~e~~gdv 163 (173)
+|+|.-+|+||||+|.+-. +.|++|+++|+++|+.+ .+++||+||+.++ ++++|..
T Consensus 80 --ACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~tSRLGCQI~l~-keldG~~ 139 (159)
T KOG3309|consen 80 --ACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTETSRLGCQIVLT-KELDGMR 139 (159)
T ss_pred --cccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhccccccccceEEEec-cccCCcE
Confidence 9999999999999999877 68899999999999996 8999999999999 9999853
No 2
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.85 E-value=1.1e-20 Score=148.71 Aligned_cols=102 Identities=25% Similarity=0.340 Sum_probs=86.1
Q ss_pred CCcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEecCc-ccCCCCC
Q 030671 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK-DLLNERT 132 (173)
Q Consensus 55 ~~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~-~~l~~~t 132 (173)
...++|+|.++ ||+. ++++++.|+||| ++|.++ ++++++ .|+|.|.||||+|+|.+|+ ..+++++
T Consensus 33 ~g~v~I~~~~~----dG~~--~~v~~~~G~sLL-eal~~~~~i~i~~------~CGG~g~CgtC~V~V~~g~~~~l~~~~ 99 (143)
T PTZ00490 33 PGKVKVCVKKR----DGTH--CDVEVPVGMSLM-HALRDVAKLDVEG------TCNGCMQCATCHVYLSAASFKKLGGPS 99 (143)
T ss_pred CCcEEEEEEcC----CCCE--EEEEECCCccHH-HHHHHcCCCCccc------cCCCCCEeCCCEEEECCCccccCCCCC
Confidence 45799999964 4443 678999999999 999995 799998 9999999999999999986 6789999
Q ss_pred hHHHhccCCC---CCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 133 NTELRYLKKK---PESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 133 ~~E~~~L~~~---~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
+.|.++|+.. .+++|||||+.+. ++++| ++|++-+.+
T Consensus 100 ~~E~~~L~~~~~~~~gsRLaCQi~v~-~~ldg-l~V~vp~~~ 139 (143)
T PTZ00490 100 EEEEDVLAKALDVKETSRLACQVDLT-PEMDG-LEVELPSYV 139 (143)
T ss_pred hHHHHHhhccccCCCCcEEeeeEEEe-cCCCC-EEEEeCccc
Confidence 9999999864 7899999999998 66644 677766654
No 3
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.84 E-value=1.5e-20 Score=143.11 Aligned_cols=97 Identities=32% Similarity=0.436 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEec--CcccCCCCChHH
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID--GKDLLNERTNTE 135 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~--G~~~l~~~t~~E 135 (173)
|+|+|+++. |.. +.+.+..|+||| +|++++|+++++ .|+|.|.||||+|+|++ +...++++++.|
T Consensus 1 ~~V~fi~~~----G~~--~~v~~~~G~tLl-~a~~~~gi~i~~------~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E 67 (117)
T PLN02593 1 ISVTFVDKD----GEE--RTVKAPVGMSLL-EAAHENDIELEG------ACEGSLACSTCHVIVMDEKVYNKLPEPTDEE 67 (117)
T ss_pred CEEEEEcCC----CCE--EEEEECCCCcHH-HHHHHcCCCCCc------cCCCcceeCCCEEEEecCccccCCCCCChHH
Confidence 578898653 322 567899999999 999999999998 99999999999999954 336789999999
Q ss_pred HhccCC---CCCCeEEeeeeEeeecCCCccEEEEeCC
Q 030671 136 LRYLKK---KPESWRLACQTIVGNKENSGKVVVQRIP 169 (173)
Q Consensus 136 ~~~L~~---~~~g~RLaCQ~~v~~~e~~gdv~V~~~p 169 (173)
.++|+. ..+++|||||+.+. .+++ +++|.+-+
T Consensus 68 ~~~L~~~~~~~~~sRLaCQ~~v~-~~~~-~~~v~ip~ 102 (117)
T PLN02593 68 NDMLDLAFGLTETSRLGCQVIAK-PELD-GMRLALPA 102 (117)
T ss_pred HHHHhcccCCCCCeEecceeEee-cCCC-CEEEEcCc
Confidence 999984 27899999999997 5553 46666543
No 4
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.79 E-value=5.4e-19 Score=132.72 Aligned_cols=83 Identities=33% Similarity=0.516 Sum_probs=73.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC---CCCeEEeeee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK---PESWRLACQT 152 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~---~~g~RLaCQ~ 152 (173)
+.+++.+|+||| ++|+++|+++++ .|+|.|.||||+|+|.+|...+++.+..|.++|+.. .+++||+||+
T Consensus 16 ~~~~~~~g~tLL-~a~~~~gi~i~~------~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~ 88 (110)
T TIGR02007 16 AVVEAKPGETIL-DVALDNGIEIEH------ACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQA 88 (110)
T ss_pred eEEEECCCChHH-HHHHHcCCCccc------cCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeE
Confidence 467899999999 999999999999 999999999999999999888888889999999753 7899999999
Q ss_pred EeeecCCCccEEEEeCC
Q 030671 153 IVGNKENSGKVVVQRIP 169 (173)
Q Consensus 153 ~v~~~e~~gdv~V~~~p 169 (173)
++. +++++|++.+
T Consensus 89 ~~~----~~dl~v~~~~ 101 (110)
T TIGR02007 89 VVA----DEDLVVEIPK 101 (110)
T ss_pred EEc----CCCEEEEECc
Confidence 886 2488888754
No 5
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.73 E-value=8.6e-18 Score=124.96 Aligned_cols=77 Identities=31% Similarity=0.548 Sum_probs=66.5
Q ss_pred EEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeEe
Q 030671 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154 (173)
Q Consensus 77 ~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~v 154 (173)
.+.+..|+||| ++|+++||++++ +|+| |.||||+|+|.+|.+.++++++.|+++|+.. ..++||+||+++
T Consensus 16 ~~~~~~g~tiL-e~a~~~gi~i~~------~C~~-g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~ 87 (102)
T COG0633 16 TEAVNEGETLL-EAAERNGIPIEY------ACRG-GACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRV 87 (102)
T ss_pred EEeccCCcHHH-HHHHHCCCccee------cCCC-CccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEE
Confidence 34666799999 999999999999 9996 6999999999999777889999999999943 677999999999
Q ss_pred eecCCCccEEEE
Q 030671 155 GNKENSGKVVVQ 166 (173)
Q Consensus 155 ~~~e~~gdv~V~ 166 (173)
. +++.|.
T Consensus 88 ~-----~d~~i~ 94 (102)
T COG0633 88 K-----GDLDIE 94 (102)
T ss_pred C-----CCcceE
Confidence 8 555543
No 6
>CHL00134 petF ferredoxin; Validated
Probab=99.70 E-value=8.5e-17 Score=118.84 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=64.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (173)
+.+.+++|+||| ++|+++||++++ +|+ .|.||+|+++|++|..... +...|+. ..++++|+||++
T Consensus 17 ~~~~~~~~~tLL-~a~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~v~~~-----~~~~l~~~e~~~g~~L~C~~~ 83 (99)
T CHL00134 17 VTIDCPDDVYIL-DAAEEQGIDLPY------SCR-AGACSTCAGKVTEGTVDQS-----DQSFLDDDQLEAGFVLTCVAY 83 (99)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEEeCccccC-----cccCCCHHHHhCCeEEEeeCE
Confidence 467999999999 999999999999 999 9999999999999985431 1223554 278999999999
Q ss_pred eeecCCCccEEEEeCC
Q 030671 154 VGNKENSGKVVVQRIP 169 (173)
Q Consensus 154 v~~~e~~gdv~V~~~p 169 (173)
+. +|++|++.+
T Consensus 84 ~~-----~d~~i~~~~ 94 (99)
T CHL00134 84 PT-----SDCTILTHQ 94 (99)
T ss_pred EC-----CCeEEEecc
Confidence 98 999998765
No 7
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.69 E-value=8.9e-17 Score=118.04 Aligned_cols=76 Identities=17% Similarity=0.370 Sum_probs=64.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (173)
+.+.+++|+||| |+|+++||++++ +|+ +|.||+|+|+|++|...+. +...|+. ..++++|+||+.
T Consensus 15 ~~~~~~~g~tLL-da~~~~Gi~i~~------~C~-~G~Cg~C~v~v~~G~~~~~-----~~~~l~~~~~~~g~~LaC~~~ 81 (97)
T TIGR02008 15 ETIECPDDQYIL-DAAEEAGIDLPY------SCR-AGACSTCAGKVEEGTVDQS-----DQSFLDDDQMEAGYVLTCVAY 81 (97)
T ss_pred EEEEECCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCceEEEeCcEecC-----ccCCCCHHHHhCCeEEEeeCE
Confidence 467899999999 999999999999 999 8999999999999985431 1223544 268999999999
Q ss_pred eeecCCCccEEEEeCC
Q 030671 154 VGNKENSGKVVVQRIP 169 (173)
Q Consensus 154 v~~~e~~gdv~V~~~p 169 (173)
+. +|++|++..
T Consensus 82 ~~-----~di~v~~~~ 92 (97)
T TIGR02008 82 PT-----SDCTIETHK 92 (97)
T ss_pred EC-----CCeEEEecc
Confidence 98 999998865
No 8
>PLN03136 Ferredoxin; Provisional
Probab=99.67 E-value=2.9e-16 Score=124.30 Aligned_cols=90 Identities=21% Similarity=0.474 Sum_probs=73.5
Q ss_pred CcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHH
Q 030671 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (173)
Q Consensus 56 ~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (173)
..++|+|..+. +. +++.+++|++|| |+++++||++|+ +|+ .|.||+|+++|.+|.... .+
T Consensus 53 ~~~~V~l~~~~----~~---~~~~~~~g~tIL-dAa~~~Gi~lp~------sCr-~G~CGtC~~~l~~G~V~~-----~~ 112 (148)
T PLN03136 53 ATYKVKFITPE----GE---QEVECEEDVYVL-DAAEEAGIDLPY------SCR-AGSCSSCAGKVVSGSIDQ-----SD 112 (148)
T ss_pred eeEEEEEecCC----Cc---EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEEEEecCcCcc-----Cc
Confidence 45778886432 21 467999999999 999999999999 999 899999999999998643 22
Q ss_pred HhccCCC--CCCeEEeeeeEeeecCCCccEEEEeCCC
Q 030671 136 LRYLKKK--PESWRLACQTIVGNKENSGKVVVQRIPQ 170 (173)
Q Consensus 136 ~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~V~~~p~ 170 (173)
...|++. .+|++|+||+++. +|++|++..+
T Consensus 113 ~~~L~~~e~~~G~~LaC~a~p~-----sD~~Ie~~~e 144 (148)
T PLN03136 113 QSFLDDEQISEGYVLTCVAYPT-----SDVVIETHKE 144 (148)
T ss_pred ccCCCHHHhcCCEEEEeEeEEC-----CCcEEecCCh
Confidence 3456664 7899999999998 9999998764
No 9
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.65 E-value=8.2e-16 Score=110.31 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=58.8
Q ss_pred EEEecC-CchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeeeeEee
Q 030671 77 RAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (173)
Q Consensus 77 ~v~v~~-G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (173)
.+.+.+ |+||| |||+++|+++|| +|+ .|.||+|++++++|........ ..+..++++|+||+++.
T Consensus 12 ~~~~~~~~~tlL-~a~~~~gi~~p~------~Cr-~G~Cg~C~~~~~sG~v~~~~~~------~~~~~~g~~L~C~~~p~ 77 (84)
T PRK10713 12 QLLCQDEHPSLL-AALESHNVAVEY------QCR-EGYCGSCRTRLVAGQVDWIAEP------LAFIQPGEILPCCCRAK 77 (84)
T ss_pred EEEecCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEeEEEeCeEecCCCc------cchhhCCEEEEeeCEEC
Confidence 457775 59999 999999999999 999 8999999999999996432211 12346789999999998
Q ss_pred ecCCCccEEEEe
Q 030671 156 NKENSGKVVVQR 167 (173)
Q Consensus 156 ~~e~~gdv~V~~ 167 (173)
+|++|++
T Consensus 78 -----sd~~ie~ 84 (84)
T PRK10713 78 -----GDIEIEM 84 (84)
T ss_pred -----CCEEEeC
Confidence 8998863
No 10
>PTZ00038 ferredoxin; Provisional
Probab=99.63 E-value=1.2e-15 Score=125.29 Aligned_cols=89 Identities=19% Similarity=0.396 Sum_probs=71.3
Q ss_pred CcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHH
Q 030671 56 PEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (173)
Q Consensus 56 ~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (173)
...+|+|..+.+ + +.+.+++|+||| |||+++||++|+ .|+ .|.||+|+|+|.+|.... .|
T Consensus 94 ~~~~Vt~~~~~g--~-----~~~~v~~geTIL-dAae~aGI~lp~------sCr-~G~CGtCkvrV~~GeV~~-----~e 153 (191)
T PTZ00038 94 LFYNITLQTPDG--E-----KVIECDEDEYIL-DAAERQGVELPY------SCR-GGSCSTCAAKLLEGEVDN-----ED 153 (191)
T ss_pred ceEEEEEEeCCC--c-----EEEEeCCCCcHH-HHHHHcCCCCCc------CCC-CccCCCCEeEEeeccccc-----Cc
Confidence 346677753321 1 467999999999 999999999999 999 599999999999998532 23
Q ss_pred HhccCCC--CCCeEEeeeeEeeecCCCccEEEEeCC
Q 030671 136 LRYLKKK--PESWRLACQTIVGNKENSGKVVVQRIP 169 (173)
Q Consensus 136 ~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~V~~~p 169 (173)
...|++. .+|++|+||+++. +|++|++..
T Consensus 154 ~~~Ls~ee~~~G~~LaCqa~p~-----sDi~Ie~p~ 184 (191)
T PTZ00038 154 QSYLDDEQLKKGYCLLCTCYPK-----SDCTIETHK 184 (191)
T ss_pred cccCCHHHhcCCEEEEeeCEEC-----CCeEEecCC
Confidence 4456653 7899999999998 999998765
No 11
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.61 E-value=3.2e-15 Score=133.40 Aligned_cols=92 Identities=32% Similarity=0.604 Sum_probs=74.6
Q ss_pred CCCcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCCh
Q 030671 54 EKPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTN 133 (173)
Q Consensus 54 ~~~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~ 133 (173)
+...++|++.+.. + +++.+++|+||| ++++++|+++++ .|+|.|.||+|+|+|.+|...+ ..
T Consensus 32 ~~~~~~i~~~~~~---~-----~~~~~~~g~tLL-~a~~~~gi~i~~------~C~g~G~CgtC~v~v~~G~~~~---~~ 93 (409)
T PRK05464 32 PSGDVTIKINGDP---E-----KTITVPAGGKLL-GALASNGIFLSS------ACGGGGSCGQCRVKVKEGGGDI---LP 93 (409)
T ss_pred cCccEEEEEcCCC---c-----EEEEECCCchHH-HHHHHcCCCccc------CCCCccEeCCCEEEEecCCcCC---Ch
Confidence 4467888875311 1 467899999999 999999999999 9998899999999999998543 34
Q ss_pred HHHhccCCC--CCCeEEeeeeEeeecCCCccEEEEeC
Q 030671 134 TELRYLKKK--PESWRLACQTIVGNKENSGKVVVQRI 168 (173)
Q Consensus 134 ~E~~~L~~~--~~g~RLaCQ~~v~~~e~~gdv~V~~~ 168 (173)
.|...|+.. .+++||+||+.+. +|++|+..
T Consensus 94 ~e~~~l~~~e~~~g~rLaCq~~~~-----~d~~ie~~ 125 (409)
T PRK05464 94 TELSHISKREAKEGWRLSCQVKVK-----QDMKIEVP 125 (409)
T ss_pred hhhhhcCHhhccCCcEEEeeCEEC-----CCEEEEEC
Confidence 566667664 7899999999998 88888876
No 12
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.60 E-value=3.7e-15 Score=132.90 Aligned_cols=78 Identities=36% Similarity=0.709 Sum_probs=67.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (173)
+++.+.+|+||| +||+++|+++++ .|+|.|.||+|+|+|.+|...+ +..|...|+.. .+++||+||+.
T Consensus 42 ~~~~~~~g~tlL-~a~~~~gi~i~~------~C~g~G~Cg~C~v~v~~G~~~~---~~~~~~~L~~~~~~~g~rLaCq~~ 111 (405)
T TIGR01941 42 KSITVPAGGKLL-NTLASNGIFISS------ACGGGGTCGQCRVRVVEGGGEI---LPTELSHFSKREAKEGWRLSCQVK 111 (405)
T ss_pred eEEEECCCChHH-HHHHHcCCCCcc------cCCCccEeCCCEEEEccCCcCC---ChhhhhhcCHhHhcCCcEEEeeCE
Confidence 467999999999 999999999999 9998899999999999998543 34566777764 78999999999
Q ss_pred eeecCCCccEEEEeC
Q 030671 154 VGNKENSGKVVVQRI 168 (173)
Q Consensus 154 v~~~e~~gdv~V~~~ 168 (173)
+. +|++|++.
T Consensus 112 ~~-----~d~~i~~~ 121 (405)
T TIGR01941 112 VK-----QDMSIEIP 121 (405)
T ss_pred EC-----CCEEEEEC
Confidence 98 88888764
No 13
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.55 E-value=1.3e-14 Score=101.53 Aligned_cols=73 Identities=30% Similarity=0.574 Sum_probs=59.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~ 153 (173)
+.+.+++|++|| ++|+++|+++++ .|+ .|.||+|+|+|.+|...+.+. ..+.. ..+++||+||+.
T Consensus 10 ~~~~~~~g~~ll-~al~~~g~~~~~------~C~-~g~Cg~C~v~v~~G~~~~~~~-----~~~~~~~~~~~~~LaC~~~ 76 (84)
T cd00207 10 VEVEVPEGETLL-DAAREAGIDIPY------SCR-AGACGTCKVEVVEGEVDQSDP-----SLLDEEEAEGGYVLACQTR 76 (84)
T ss_pred EEEEECCCCcHH-HHHHHcCCCccc------CCC-CcCCcCCEEEEeeCccccCcc-----cCCCHHHHhCCeEEEEeCe
Confidence 466899999999 999999999998 999 589999999999999755432 22322 268899999999
Q ss_pred eeecCCCccEEEE
Q 030671 154 VGNKENSGKVVVQ 166 (173)
Q Consensus 154 v~~~e~~gdv~V~ 166 (173)
+. ++++|+
T Consensus 77 ~~-----~~i~v~ 84 (84)
T cd00207 77 VT-----DGLVIE 84 (84)
T ss_pred eC-----CCcEEC
Confidence 97 777763
No 14
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.52 E-value=3.8e-14 Score=123.69 Aligned_cols=76 Identities=28% Similarity=0.282 Sum_probs=63.0
Q ss_pred EEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCC--CCCCeEEeeeeEe
Q 030671 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKK--KPESWRLACQTIV 154 (173)
Q Consensus 77 ~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~--~~~g~RLaCQ~~v 154 (173)
.+.+.+|+||| |+|+++|+.+++ +|+ .|.||+|+++|++|...+. ..+...|+. ..++++|+||+++
T Consensus 16 ~~~~~~g~tlL-~a~~~~g~~~p~------~C~-~G~Cg~C~~~~~~G~~~~~---~~~~~~l~~~~~~~g~~L~C~~~~ 84 (340)
T PRK11872 16 FFPVGKDELLL-DAALRNGINLPL------DCR-EGVCGTCQGRCESGIYSQD---YVDEDALSERDLAQRKMLACQTRV 84 (340)
T ss_pred EEEeCCCCcHH-HHHHHcCCCCcC------CCC-CeECCCCEEEEEeCccccC---ccccccCCHHHHhCCeEEEeeCEE
Confidence 46789999999 999999999999 999 8999999999999995432 123345655 3789999999999
Q ss_pred eecCCCccEEEEeC
Q 030671 155 GNKENSGKVVVQRI 168 (173)
Q Consensus 155 ~~~e~~gdv~V~~~ 168 (173)
. +|++|+..
T Consensus 85 ~-----~d~~i~~~ 93 (340)
T PRK11872 85 K-----SDAAFYFD 93 (340)
T ss_pred C-----CceEEEec
Confidence 8 89998743
No 15
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.50 E-value=8.1e-14 Score=120.71 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=64.3
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (173)
+++.+++|+||| |+|+++|+++++ +|+ .|.||+|+|++.+|..... ..+...|++. .++++|+||++
T Consensus 12 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~~---~~~~~~l~~~~~~~g~~L~C~~~ 80 (339)
T PRK07609 12 RQFTAEPDETIL-DAALRQGIHLPY------GCK-NGACGSCKGRLLEGEVEQG---PHQASALSGEERAAGEALTCCAK 80 (339)
T ss_pred eEEEeCCCCcHH-HHHHHcCCCCCC------CCC-CeECCCCEEEEEECcEecc---cccccCCCHHHHhCCcEEEeeCE
Confidence 456899999999 999999999999 998 8999999999999996432 2233456553 67899999999
Q ss_pred eeecCCCccEEEEeC
Q 030671 154 VGNKENSGKVVVQRI 168 (173)
Q Consensus 154 v~~~e~~gdv~V~~~ 168 (173)
+. +|++|++.
T Consensus 81 ~~-----~d~~i~~~ 90 (339)
T PRK07609 81 PL-----SDLVLEAR 90 (339)
T ss_pred EC-----CCEEEEec
Confidence 98 89999865
No 16
>PRK05713 hypothetical protein; Provisional
Probab=99.49 E-value=5.4e-14 Score=121.14 Aligned_cols=75 Identities=28% Similarity=0.511 Sum_probs=62.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (173)
++|.+.+|+||| |||+++||++++ +|+ .|.||+|+|+|.+|.... .+...|++. .+++||+||+.
T Consensus 9 ~~~~~~~g~tlL-~a~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~~~~-----~~~~~l~~~~~~~g~~L~C~~~ 75 (312)
T PRK05713 9 RRWSVPAGSNLL-DALNAAGVAVPY------SCR-AGSCHACLVRCLQGEPED-----ALPEALAAEKREQGWRLACQCR 75 (312)
T ss_pred eEEEECCCCcHH-HHHHHcCCCCCc------CCC-CcCCCCCeEEEEeCcccc-----CccccCCHHHHhCCeEEEeECE
Confidence 467899999999 999999999999 999 799999999999998531 112345442 68899999999
Q ss_pred eeecCCCccEEEEeC
Q 030671 154 VGNKENSGKVVVQRI 168 (173)
Q Consensus 154 v~~~e~~gdv~V~~~ 168 (173)
+. +|++|+..
T Consensus 76 ~~-----~d~~i~~~ 85 (312)
T PRK05713 76 VV-----GDLRVEVF 85 (312)
T ss_pred EC-----CceEEEec
Confidence 98 99999863
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.46 E-value=6.1e-14 Score=97.61 Aligned_cols=69 Identities=36% Similarity=0.580 Sum_probs=50.8
Q ss_pred EEEEecCCch-HHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeeeeE
Q 030671 76 ERAKAISGEK-LLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~t-LLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~ 153 (173)
+++.+.+|++ || ++|+++ |+++++ +|+| |.||+|+|+|.+|.. .......+.+.+. ..+.||+||++
T Consensus 8 ~~~~~~~~~~~ll-~~~~~~~gi~i~~------~C~~-g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~--~~~~rLaCq~~ 76 (78)
T PF00111_consen 8 VTVEVPPGETLLL-DALERAGGIGIPY------SCGG-GGCGTCRVRVLEGEV-QSNETFLEDEELA--EGGIRLACQTR 76 (78)
T ss_dssp EEEEEETTSBBHH-HHHHHTTTTTSTT------SSSS-SSSSTTEEEEEESEE-ETTTSSSHHHHHH--TTEEEEGGGSE
T ss_pred EEEEeCCCccHHH-HHHHHcCCCCccc------CCCC-CccCCcEEEEeeCcc-cCCcccCCHHHHH--cCCCcCCcEEE
Confidence 5778999999 99 999999 999999 9996 559999999999986 2111111111111 23458999998
Q ss_pred ee
Q 030671 154 VG 155 (173)
Q Consensus 154 v~ 155 (173)
++
T Consensus 77 ~t 78 (78)
T PF00111_consen 77 VT 78 (78)
T ss_dssp ES
T ss_pred eC
Confidence 74
No 18
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.44 E-value=3.2e-13 Score=117.10 Aligned_cols=72 Identities=26% Similarity=0.511 Sum_probs=60.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeE
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTI 153 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~ 153 (173)
+.+.+++|+||| ++|+++|+++++ +|+ .|.||+|++++++|..... ....|++. .+|++|+||++
T Consensus 258 ~~~~~~~~~~lL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~ 324 (332)
T PRK10684 258 REFYAPVGTTLL-EALESNKVPVVA------ACR-AGVCGCCKTKVVSGEYTVS-----STMTLTPAEIAQGYVLACSCH 324 (332)
T ss_pred EEEEeCCCChHH-HHHHHcCCCccC------CCC-CcCCCCCEEEEecCccccc-----ccccCCHHHHhCCcEEEeeCE
Confidence 467889999999 999999999999 999 8999999999999996421 12345553 78999999999
Q ss_pred eeecCCCccEEE
Q 030671 154 VGNKENSGKVVV 165 (173)
Q Consensus 154 v~~~e~~gdv~V 165 (173)
+. +|++|
T Consensus 325 ~~-----~d~~i 331 (332)
T PRK10684 325 PQ-----GDLVL 331 (332)
T ss_pred EC-----CCeEE
Confidence 98 88876
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.42 E-value=2.8e-13 Score=117.98 Aligned_cols=76 Identities=36% Similarity=0.665 Sum_probs=63.4
Q ss_pred EEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeEe
Q 030671 77 RAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIV 154 (173)
Q Consensus 77 ~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~v 154 (173)
.+.+++|.+|| .+|..+||.+++ .|||.|+||.|+|+|.+|.... -+.|...++.+ .+||||+||+.+
T Consensus 48 ~~t~~aG~kLL-~~L~~~gifi~S------aCGGggsC~QCkv~v~~ggge~---LpTe~sh~skrea~eG~RLsCQ~~V 117 (410)
T COG2871 48 TKTVPAGGKLL-GALASSGIFISS------ACGGGGSCGQCKVRVKKGGGEI---LPTELSHISKREAKEGWRLSCQVNV 117 (410)
T ss_pred ceecCCchhHH-HHHHhCCccccc------CCCCCccccccEEEEecCCCcc---CcchhhhhhhhhhhccceEEEEecc
Confidence 55899999999 999999999999 9999999999999999988422 24466666664 799999999999
Q ss_pred eecCCCccEEEEe
Q 030671 155 GNKENSGKVVVQR 167 (173)
Q Consensus 155 ~~~e~~gdv~V~~ 167 (173)
. .|+.+++
T Consensus 118 k-----~dm~lev 125 (410)
T COG2871 118 K-----HDMDLEV 125 (410)
T ss_pred c-----ccceeec
Confidence 8 6666554
No 20
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.40 E-value=8.6e-13 Score=114.84 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=58.4
Q ss_pred EEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCC--CCCeEEeeeeEee
Q 030671 78 AKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKK--PESWRLACQTIVG 155 (173)
Q Consensus 78 v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~--~~g~RLaCQ~~v~ 155 (173)
+.+++|+||| ++|+++|+++++ +|+ .|.||+|++++++|...+. +...|+.. .++++|+||+++.
T Consensus 277 ~~~~~~~slL-~~~~~~gi~~~~------~C~-~G~Cg~C~~~~~~G~v~~~-----~~~~l~~~~~~~g~~l~C~~~~~ 343 (352)
T TIGR02160 277 SSLSRDESVL-DAALRARPDLPF------ACK-GGVCGTCRAKVLEGKVDME-----RNYALEPDEVDAGYVLTCQAYPL 343 (352)
T ss_pred EecCCCCcHH-HHHHHcCCCCcC------CCC-CccCCCCEEEEeccccccc-----cccCCCHHHHhCCcEEEeeEEEC
Confidence 5788999999 999999999999 999 6999999999999996432 22335543 6889999999997
Q ss_pred ecCCCcc-EEEE
Q 030671 156 NKENSGK-VVVQ 166 (173)
Q Consensus 156 ~~e~~gd-v~V~ 166 (173)
+| |+|.
T Consensus 344 -----~~~~~~~ 350 (352)
T TIGR02160 344 -----SDKLVVD 350 (352)
T ss_pred -----CCcEEEe
Confidence 44 7665
No 21
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.31 E-value=2.7e-12 Score=117.87 Aligned_cols=75 Identities=32% Similarity=0.653 Sum_probs=65.3
Q ss_pred cCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeeeeEeeecCCC
Q 030671 81 ISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVGNKENS 160 (173)
Q Consensus 81 ~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~ 160 (173)
++|++|| +|+++.|+.+.+ .|+|+|+||.|.|.|.+|...+...+++| .++.+ .++||+||+.+.
T Consensus 15 ~~g~~il-~aar~~gv~i~s------~cggk~~cgkc~v~v~~g~~~i~s~~dh~-k~~~~--~g~rlac~~~v~----- 79 (614)
T COG3894 15 DEGTTIL-DAARRLGVYIRS------VCGGKGTCGKCQVVVQEGNHKIVSSTDHE-KYLRE--RGYRLACQAQVL----- 79 (614)
T ss_pred CCCchHH-HHHHhhCceEee------ecCCCccccceEEEEEeCCceeccchhHH-HHHHh--hceeeeeehhhc-----
Confidence 5899999 999999999999 99999999999999999997676667775 34444 399999999998
Q ss_pred ccEEEEeCCC
Q 030671 161 GKVVVQRIPQ 170 (173)
Q Consensus 161 gdv~V~~~p~ 170 (173)
||++|-+-|+
T Consensus 80 gd~~i~ip~e 89 (614)
T COG3894 80 GDLVIFIPPE 89 (614)
T ss_pred CceEEEcCch
Confidence 9999987664
No 22
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=99.10 E-value=1.6e-10 Score=87.49 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=65.3
Q ss_pred cEEEEEEcCCCCC-CCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHH
Q 030671 57 EIELEFIAPRAGD-DGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (173)
Q Consensus 57 ~i~v~f~~~~~~~-d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (173)
+++|..++++... ...|+.++|.+.+++||| |+|....-.+..++..+++|+ +|.||+|.|+|- |.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVL-d~L~~Ik~~~D~sLafr~sCr-~giCGsCam~IN-G~---------- 67 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVL-DALNYIKEEQDPSLAFRYSCR-SGICGSCAMRIN-GR---------- 67 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHH-HHHHHHHHHT-TT--B--SSS-SSSSSTTEEEET-TE----------
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHH-HHHHHHHhccCCCeEEEecCC-CCCCCCCEEEEC-Cc----------
Confidence 4678888774422 455677899999999999 999888777777888899999 899999999987 55
Q ss_pred HhccCCCCCCeEEeeeeEeeecCCCc---cEEEEeCCCC
Q 030671 136 LRYLKKKPESWRLACQTIVGNKENSG---KVVVQRIPQW 171 (173)
Q Consensus 136 ~~~L~~~~~g~RLaCQ~~v~~~e~~g---dv~V~~~p~~ 171 (173)
.+|||.+.+. ...+. .|+|+-++..
T Consensus 68 ----------~~LAC~t~v~-~~~~~~~~~i~IePL~~f 95 (110)
T PF13085_consen 68 ----------PRLACKTQVD-DLIEKFGNVITIEPLPNF 95 (110)
T ss_dssp ----------EEEGGGSBGG-GCTTSETBEEEEEESTTS
T ss_pred ----------eecceeeEch-hccCCCcceEEEEECCCC
Confidence 5999999996 33332 4888888753
No 23
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=99.01 E-value=8e-10 Score=95.43 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCCCCCCCCcE--EEEEEcCCCCCCCCccEEEEEecC-CchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecC
Q 030671 48 PSSPEPEKPEI--ELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 48 ~~~~~~~~~~i--~v~f~~~~~~~d~~~~v~~v~v~~-G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G 124 (173)
++..+++..++ +|..+++..+....|..++|.+.+ |.||| |+|....-....++.++++|+ .|.||+|.+.|- |
T Consensus 34 ~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL-d~L~~Ik~~~D~sLsfr~sCr-~giCGsCam~IN-G 110 (276)
T PLN00129 34 SSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL-DVLIKIKNEQDPSLTFRRSCR-EGICGSCAMNID-G 110 (276)
T ss_pred cCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHH-HHHHHHHHcCCCCeEEeccCC-CCCCCCCeeEEC-C
Confidence 33334444444 445555543223356556777765 89999 999887766667788999999 899999999987 5
Q ss_pred cccCCCCChHHHhccCCCCCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 125 KDLLNERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 125 ~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
. .+|||++.+. ...++.|+|+-++..
T Consensus 111 ~--------------------p~LAC~t~v~-~~~~~~i~iePl~~f 136 (276)
T PLN00129 111 K--------------------NTLACLTKID-RDESGPTTITPLPHM 136 (276)
T ss_pred c--------------------ccccccccHh-hcCCCcEEEEECCCC
Confidence 4 4899999986 333467888887753
No 24
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.92 E-value=2.1e-09 Score=90.85 Aligned_cols=90 Identities=20% Similarity=0.367 Sum_probs=68.9
Q ss_pred EEEEEEcCCC-CCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHH
Q 030671 58 IELEFIAPRA-GDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (173)
Q Consensus 58 i~v~f~~~~~-~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (173)
++|..+++.. +....|+.++|.+.+++||| |||....-....+++++++|+ .|.||+|.+.|- |.
T Consensus 7 ~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvL-daL~~Ik~~~D~sL~fr~sCr-~giCGsCam~IN-G~----------- 72 (239)
T PRK13552 7 FNIFRYNPQDPGSKPHMVTYQLEETPGMTLF-IALNRIREEQDPSLQFDFVCR-AGICGSCAMVIN-GR----------- 72 (239)
T ss_pred EEEEeeCCCCCCCCcceEEEEecCCCCCCHH-HHHHHHHhcCCCCeeEeccCC-CCCCCCceeEEC-Ce-----------
Confidence 5555555532 22234666788999999999 999998877777899999999 899999999987 54
Q ss_pred hccCCCCCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 137 RYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
.+|||++.+. ...+|.|+|+-++..
T Consensus 73 ---------~~LAC~t~v~-~~~~~~i~iePl~~f 97 (239)
T PRK13552 73 ---------PTLACRTLTS-DYPDGVITLMPLPVF 97 (239)
T ss_pred ---------EhhhhhccHh-hcCCCcEEEEECCCC
Confidence 4899999986 323357888887753
No 25
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.78 E-value=1e-08 Score=86.75 Aligned_cols=90 Identities=24% Similarity=0.435 Sum_probs=69.9
Q ss_pred cEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHH
Q 030671 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (173)
Q Consensus 57 ~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (173)
++.|..+++..+ ...++.++|...+|+||| |||...+-....++..+++|+ .|.||+|.+.|- |.
T Consensus 4 ~~~i~R~~p~~~-~p~~~~yev~~~~~~~vL-daL~~Ik~e~d~~Lsfr~sCR-~gICGSCam~IN-G~----------- 68 (234)
T COG0479 4 KFKIYRYNPDDD-KPYWQTYEVPYDEGMTVL-DALLYIKEEQDPTLSFRRSCR-EGICGSCAMNIN-GK----------- 68 (234)
T ss_pred EEEEEEECCCCC-CcceEEEEecCCCCCcHH-HHHHHHHHhcCCccchhhhcc-CCcCCcceeEEC-Cc-----------
Confidence 456667766542 345555678888999999 999988877777899999999 899999999987 54
Q ss_pred hccCCCCCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 137 RYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
.||||.+.+. ...++.|+|+-+|..
T Consensus 69 ---------prLAC~t~~~-~~~~~~i~iePL~~f 93 (234)
T COG0479 69 ---------PRLACKTLMK-DLEEGVITIEPLPNF 93 (234)
T ss_pred ---------cccchhchhh-hccCCceEEEECCCC
Confidence 4899999886 333446888887764
No 26
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.77 E-value=1.2e-08 Score=86.04 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=64.3
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecC-CchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHH
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAIS-GEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~-G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (173)
++|..+++..+....|..++|++.+ +.||| |+|.... ....+++++++|+ .|.||+|.+.|- |.
T Consensus 7 ~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvl-d~L~~ik-~~d~~l~fr~sCr-~giCGsCa~~iN-G~----------- 71 (235)
T PRK12575 7 LHIYRYDPDDDAAPRMQRYEIAPRAEDRMLL-DVLGRVK-AQDETLSYRRSCR-EGICGSDAMNIN-GR----------- 71 (235)
T ss_pred EEEEeeCCCCCCCceeEEEEecCCCCCCcHH-HHHHHHH-hcCCCeeeeccCC-CCCCCCCeeEEC-Ce-----------
Confidence 4445555433223446556777765 56999 9998877 6666789999999 899999999987 54
Q ss_pred hccCCCCCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 137 RYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
.+|||++.+. ++.+.|+|+-++..
T Consensus 72 ---------~~LaC~t~~~--~~~~~i~iePl~~~ 95 (235)
T PRK12575 72 ---------NGLACLTNMQ--ALPREIVLRPLPGL 95 (235)
T ss_pred ---------EcchhhCcHh--HcCCCEEEeECCCC
Confidence 5899999996 34456888877653
No 27
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.77 E-value=1.1e-08 Score=86.91 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCC-------ccccCCCcCCCCCceeecCcEEEEecCcccCCC
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIE-------LYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNE 130 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~-------l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~ 130 (173)
++|..+++ .+....|..++|++.+++||| |||....-. ...+++++++|+ .|.||+|.+.|- |.
T Consensus 8 ~~i~R~~~-~~~~~~~q~y~v~~~~~~tvL-daL~~I~~~~~~~~g~~~~~l~fr~sCr-~giCGsCam~IN-G~----- 78 (249)
T PRK08640 8 LIIKRQDG-PDSKPYWEEFEIPYRPNMNVI-SALMEIRRNPVNAKGEKTTPVVWDMNCL-EEVCGACSMVIN-GK----- 78 (249)
T ss_pred EEEEeeCC-CCCCceeEEEEecCCCCCcHH-HHHHHHHhcccccccccCCCeeEecccC-CCCCCcCeeEEC-Cc-----
Confidence 44555554 222345666788889999999 999866432 112377888999 899999999987 54
Q ss_pred CChHHHhccCCCCCCeEEeeeeEeeecCCCccEEEEeCCC
Q 030671 131 RTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQ 170 (173)
Q Consensus 131 ~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~ 170 (173)
.+|||++.+. ++.+.|+|+-++.
T Consensus 79 ---------------p~LAC~t~v~--~~~~~i~iePl~~ 101 (249)
T PRK08640 79 ---------------PRQACTALID--QLEQPIRLEPMST 101 (249)
T ss_pred ---------------cchhhhChHH--HcCCcEEEEECCC
Confidence 4799999885 4456788888764
No 28
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.76 E-value=7.5e-09 Score=87.61 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=64.7
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHh
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (173)
++|..++++.+....|+.+++++.+|.||| ++|...+-.+..+++.+.+|+ .|.||+|.|.|. |.
T Consensus 9 ~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl-~~L~~ik~~~d~~l~fr~~C~-~giCGsC~v~In-G~------------ 73 (244)
T PRK12385 9 IEVLRYNPEVDTEPHSQTYEVPYDETTSLL-DALGYIKDNLAPDLSYRWSCR-MAICGSCGMMVN-NV------------ 73 (244)
T ss_pred EEEEeeCCCCCCCceeEEEEeeCCCCCcHH-HHHHHHHHhcCCCceeccCCC-CCcCCCCcceEC-cc------------
Confidence 445555554322244667788899999999 999887766655677778999 799999999998 54
Q ss_pred ccCCCCCCeEEeeeeEeeecCCCccEEEEeCCC
Q 030671 138 YLKKKPESWRLACQTIVGNKENSGKVVVQRIPQ 170 (173)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~ 170 (173)
.+|||++.+. ++.+.++|+.++.
T Consensus 74 --------~~laC~t~~~--~~~~~~~iePl~~ 96 (244)
T PRK12385 74 --------PKLACKTFLR--DYTGGMKVEALAN 96 (244)
T ss_pred --------ChhhHhhHHH--HcCCCeEEeeCCC
Confidence 3789999886 3345578887764
No 29
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.75 E-value=2.2e-08 Score=91.22 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHh
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (173)
++|..+++..+ ...|+.+++.+++|+||| |+|.+.+.....++....+|+ .|.||+|.|+| +|.
T Consensus 6 ~~i~r~~~~~~-~~~~~~~~v~~~~~~tvl-~al~~~~~~~~~~l~~~~~C~-~g~Cg~C~v~v-~G~------------ 69 (486)
T PRK06259 6 ITVKRFDPEKD-EPHFESYEVPVKEGMTVL-DALEYINKTYDANIAFRSSCR-AGQCGSCAVTI-NGE------------ 69 (486)
T ss_pred EEEEecCCCCC-CceeEEEEEeCCCCChHH-HHHHHhchhcCCCceecCCCC-CCCCCCCEEEE-CCe------------
Confidence 44444555432 356777788888999999 999975554222344455998 89999999996 664
Q ss_pred ccCCCCCCeEEeeeeEeeecCCCccEEEEeCC
Q 030671 138 YLKKKPESWRLACQTIVGNKENSGKVVVQRIP 169 (173)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p 169 (173)
.+|+||+.+. .+++|+..+
T Consensus 70 --------~~laC~~~~~-----~~~~i~~~~ 88 (486)
T PRK06259 70 --------PVLACKTEVE-----DGMIIEPLD 88 (486)
T ss_pred --------EecccccCCC-----CCCEEEecC
Confidence 4789999997 558888763
No 30
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.72 E-value=5e-08 Score=85.77 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=65.4
Q ss_pred EEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHh
Q 030671 58 IELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELR 137 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~ 137 (173)
++|..+++. ....|..++|.+++|+||| |+|...++.++.++..+.+|+ .|.||+|.|+|. |.
T Consensus 5 ~~i~R~~~~--~~p~~~~~~v~~~~~~tvL-~~l~~i~~~~d~tL~~~~~c~-~~~Cg~C~v~in-G~------------ 67 (329)
T PRK12577 5 FKILRQKQN--SAPYVQTYTLEVEPGNTIL-DCLNRIKWEQDGSLAFRKNCR-NTICGSCAMRIN-GR------------ 67 (329)
T ss_pred EEEEeeCCC--CCCeEEEEEEECCCCChHH-HHHHHhCCcCCCCcEEcCCCC-CCCCCCCEEEEC-Ce------------
Confidence 444445442 1234566788999999999 999999999987778888999 799999999995 54
Q ss_pred ccCCCCCCeEEeeeeEeeecCC----------CccEEEEeCCC
Q 030671 138 YLKKKPESWRLACQTIVGNKEN----------SGKVVVQRIPQ 170 (173)
Q Consensus 138 ~L~~~~~g~RLaCQ~~v~~~e~----------~gdv~V~~~p~ 170 (173)
.+|||.+.+. .++ .+.|+|+-++.
T Consensus 68 --------~~laC~t~v~-~~~~~~~~~~~~~~~~i~iePl~~ 101 (329)
T PRK12577 68 --------SALACKENVG-SELARLSDSNSGAIPEITIAPLGN 101 (329)
T ss_pred --------eecCcccchh-hhhccccccccCCCCeEEEEECCC
Confidence 4789988876 322 25678877764
No 31
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.69 E-value=4.5e-08 Score=81.98 Aligned_cols=54 Identities=33% Similarity=0.519 Sum_probs=45.3
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (173)
..+.+++|+||| +||+++|+.+|+ .|. +.|.|+.|.|+|. |.. +.+.||
T Consensus 11 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~V~v~-g~~------------------~~~~aC 64 (234)
T PRK07569 11 QLVSAREGETLL-EAAREAGIPIPT------LCHLDGLSDVGACRLCLVEIE-GSN------------------KLLPAC 64 (234)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------CcCCCCCCCCCccCCcEEEEC-CCC------------------ccccCc
Confidence 356999999999 999999999999 776 5799999999994 531 246699
Q ss_pred eeEee
Q 030671 151 QTIVG 155 (173)
Q Consensus 151 Q~~v~ 155 (173)
++.+.
T Consensus 65 ~t~v~ 69 (234)
T PRK07569 65 VTPVA 69 (234)
T ss_pred CCCCC
Confidence 99887
No 32
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.67 E-value=1.1e-07 Score=81.96 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=64.9
Q ss_pred cEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHH
Q 030671 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTEL 136 (173)
Q Consensus 57 ~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~ 136 (173)
+++|..++++ .+..|+.+.+++.+|+||| |+|...+..+..+++.+.+|+ .|.||.|.|.|. |.
T Consensus 10 ~~~i~R~~~~--~~~~~~~~~v~~~~~~tvL-d~L~~i~~~~d~tl~~~~~C~-~G~CgsC~v~IN-G~----------- 73 (279)
T PRK12576 10 IFKVKRYDPE--KGSWWQEYKVKVDRFTQVT-EALRRIKEEQDPTLSYRASCH-MAVCGSCGMKIN-GE----------- 73 (279)
T ss_pred EEEEEecCCC--CCCeEEEEEEecCCCCHHH-HHHHHhCCccCCCceecCCCC-CCCCCCCEEEEC-Cc-----------
Confidence 3444445543 3455677788999999999 999999987655577788998 999999999994 54
Q ss_pred hccCCCCCCeEEeeeeEeeecC---CCccEEEEeCCC
Q 030671 137 RYLKKKPESWRLACQTIVGNKE---NSGKVVVQRIPQ 170 (173)
Q Consensus 137 ~~L~~~~~g~RLaCQ~~v~~~e---~~gdv~V~~~p~ 170 (173)
.+|||++.+. .. .+..++|+-++.
T Consensus 74 ---------~~laC~t~v~-~~~~~~~~~~tiePl~~ 100 (279)
T PRK12576 74 ---------PRLACKTLVL-DVAKKYNSVITIEPMDY 100 (279)
T ss_pred ---------EeccccCcHH-HhhcCCCCcEEEEECCC
Confidence 4789999886 21 234577777663
No 33
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=3.6e-08 Score=70.51 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=41.3
Q ss_pred cEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCC----cCCCCCceeecCcEEEEecCcccCCCCC
Q 030671 57 EIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGK----VMNCGGGGSCGTCIVEIIDGKDLLNERT 132 (173)
Q Consensus 57 ~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~----~~~C~G~G~CGTC~V~V~~G~~~l~~~t 132 (173)
+|+|+|.+ +.+.+.+|+||| +||.++|+.+|+.-.. ..-|. .|.|+.|.|+|. |..
T Consensus 3 ~v~i~idG-----------~~v~~~~G~til-~al~~~gi~ip~~c~~~~~r~~~~~-~g~C~~C~Vev~-g~~------ 62 (82)
T PF13510_consen 3 MVTITIDG-----------KPVEVPPGETIL-EALLAAGIDIPRLCYHGRPRGGLCP-IGSCRLCLVEVD-GEP------ 62 (82)
T ss_dssp EEEEEETT-----------EEEEEEET-BHH-HHHHHTT--B-EETTTS-EEBSSSS-STT-SS-EEEES-SEE------
T ss_pred EEEEEECC-----------EEEEEcCCCHHH-HHHHHCCCeEEEeeeccCcccccCC-ccccceEEEEEC-CCc------
Confidence 57777643 467899999999 9999999999982111 22343 599999999997 431
Q ss_pred hHHHhccCCCCCCeEEeeeeEee
Q 030671 133 NTELRYLKKKPESWRLACQTIVG 155 (173)
Q Consensus 133 ~~E~~~L~~~~~g~RLaCQ~~v~ 155 (173)
...||++.+.
T Consensus 63 -------------~v~AC~t~v~ 72 (82)
T PF13510_consen 63 -------------NVRACSTPVE 72 (82)
T ss_dssp -------------EEETTT-B--
T ss_pred -------------ceEcccCCCc
Confidence 3689999887
No 34
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.62 E-value=1.1e-07 Score=79.50 Aligned_cols=89 Identities=24% Similarity=0.387 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCCCCCCccEEEEEec-CCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHH
Q 030671 57 EIELEFIAPRAGDDGSYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTE 135 (173)
Q Consensus 57 ~i~v~f~~~~~~~d~~~~v~~v~v~-~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E 135 (173)
+++|.+++++.+....|+.+++.++ +|+||| ++|...+-....+++.+.+|+ .|.||+|.|.|. |.
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~~~tvl-~~L~~~~~~~~~~l~~~~~c~-~g~Cg~C~v~vn-G~---------- 67 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDECGPMVL-DALIKIKNEIDPTLTFRRSCR-EGVCGSDAMNIN-GK---------- 67 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHhCCccCCcceeeCCCC-CCCCCCCEEEEC-Cc----------
Confidence 4778888775433356777888998 999999 999999833333466678997 899999999995 64
Q ss_pred HhccCCCCCCeEEeeeeEeeecCCCccEEEEeCC
Q 030671 136 LRYLKKKPESWRLACQTIVGNKENSGKVVVQRIP 169 (173)
Q Consensus 136 ~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p 169 (173)
.+|||.+.+. ....+.++|+-++
T Consensus 68 ----------~~laC~t~~~-~~~~~~~tiepl~ 90 (232)
T PRK05950 68 ----------NGLACITPIS-DLKKGKIVIRPLP 90 (232)
T ss_pred ----------CccchhChHh-HcCCCeEEEEECC
Confidence 2567887775 2213446666554
No 35
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.57 E-value=1.8e-07 Score=79.89 Aligned_cols=76 Identities=24% Similarity=0.402 Sum_probs=59.6
Q ss_pred CccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeee
Q 030671 72 SYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQ 151 (173)
Q Consensus 72 ~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ 151 (173)
.|+.+++.+.+++||| ++|.+.+.....+++.+.+|+ .|.||+|.|.|. |. .+|||+
T Consensus 18 ~~q~y~v~~~~~~tvL-d~L~~i~~~~d~~l~~r~~C~-~g~CGsCa~~In-G~--------------------p~laC~ 74 (251)
T PRK12386 18 ELQDYTVEVNEGEVVL-DVIHRLQATQAPDLAVRWNCK-AGKCGSCSAEIN-GR--------------------PRLMCM 74 (251)
T ss_pred ceEEEEEeCCCCCCHH-HHHHHhccccCCCCcccCCCC-CCcCCCCEEEEC-cc--------------------EeccHH
Confidence 5667788999999999 999998876666788889999 899999999987 54 489999
Q ss_pred eEeeecCCCccEEEEeCCC
Q 030671 152 TIVGNKENSGKVVVQRIPQ 170 (173)
Q Consensus 152 ~~v~~~e~~gdv~V~~~p~ 170 (173)
+.+..-+..+.++|+-++.
T Consensus 75 t~~~~~~~~~~itiepl~~ 93 (251)
T PRK12386 75 TRMSTFDEDETVTVTPMRT 93 (251)
T ss_pred hHHHHhCCCCeEEEccCCC
Confidence 9875111124577776653
No 36
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.49 E-value=1e-07 Score=78.99 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=53.8
Q ss_pred CccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeee
Q 030671 72 SYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQ 151 (173)
Q Consensus 72 ~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ 151 (173)
.|..+++++.+|+||| ++|.+.+.....+++.+.+|+ .|.||+|.|+|. |. .+|||+
T Consensus 13 ~~~~~~v~~~~~~tvl-~~l~~i~~~~~~~l~~~~~C~-~g~Cg~C~v~vn-G~--------------------~~laC~ 69 (220)
T TIGR00384 13 HLQSYEVPADEGMTVL-DALNYIKDEQDPSLAFRRSCR-NGICGSCAMNVN-GK--------------------PVLACK 69 (220)
T ss_pred eeEEEEEeCCCCCcHH-HHHHHHHHhcCCCceeecccC-CCCCCCCeeEEC-CE--------------------Ehhhhh
Confidence 3555678888999999 999998744434466677998 899999999874 64 367888
Q ss_pred eEeeecCCCc-cEEEEeCCC
Q 030671 152 TIVGNKENSG-KVVVQRIPQ 170 (173)
Q Consensus 152 ~~v~~~e~~g-dv~V~~~p~ 170 (173)
+.+. +.+. .++|+-++.
T Consensus 70 t~v~--~~g~~~~~iepl~~ 87 (220)
T TIGR00384 70 TKVE--DLGQPVMKIEPLPN 87 (220)
T ss_pred ChHH--HcCCCcEEEeeCCC
Confidence 8876 2211 267776653
No 37
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.46 E-value=2.1e-07 Score=79.28 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCCCCCccEEEEE-ecCCchHHHHHHHHCCCCc----cccCCCcCCCCCceeecCcEEEEecCcccCCCCC
Q 030671 58 IELEFIAPRAGDDGSYPVERAK-AISGEKLLRNIMLDNKIEL----YATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERT 132 (173)
Q Consensus 58 i~v~f~~~~~~~d~~~~v~~v~-v~~G~tLLrdal~~~Gi~l----~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t 132 (173)
++|..+++. +....|..++|. +.+++||| +||....-.+ ..+++++++|+ .|.||+|.+.|- |...++-
T Consensus 5 ~~i~R~~~~-~~~~~~q~y~v~~~~~~~tvL-d~L~~Ik~~~~~~~~~~l~fr~sCr-~~iCGsCam~IN-G~p~~~~-- 78 (250)
T PRK07570 5 LKIWRQKGP-DDKGKFETYEVDDISPDMSFL-EMLDVLNEQLIEKGEEPVAFDHDCR-EGICGMCGLVIN-GRPHGPD-- 78 (250)
T ss_pred EEEEecCCC-CCCceeEEEEecCCCCCCcHH-HHHHHHHHHhhccCCCCeeEecccc-CCcCCcceeEEC-CccCCCC--
Confidence 445544421 112345556777 67899999 9997653221 01377888999 899999999987 6643321
Q ss_pred hHHHhccCCCCCCeEEeeeeEeeecCC-CccEEEEeCC
Q 030671 133 NTELRYLKKKPESWRLACQTIVGNKEN-SGKVVVQRIP 169 (173)
Q Consensus 133 ~~E~~~L~~~~~g~RLaCQ~~v~~~e~-~gdv~V~~~p 169 (173)
.-||||++.+. ... .+.|+|+-++
T Consensus 79 ------------~~~LAC~t~~~-~~~~~~~i~iePl~ 103 (250)
T PRK07570 79 ------------RGTTTCQLHMR-SFKDGDTITIEPWR 103 (250)
T ss_pred ------------cccchhhhhhh-hcCCCCeEEEEECC
Confidence 13899999875 222 2567887775
No 38
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.23 E-value=2.3e-06 Score=83.13 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=48.9
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (173)
+++++++|+||| +|++++||.+|+ .|. +.|.|+.|.|+|.+|... ...+.++||
T Consensus 9 ~~~~~~~g~til-~a~~~~gi~ip~------~C~~~~~~~~G~C~~C~v~v~~g~~~--------------~~~~~~~aC 67 (847)
T PRK08166 9 KEYEVNGADNLL-EACLSLGIDIPY------FCWHPALGSVGACRQCAVKQYQNPED--------------TRGRLVMSC 67 (847)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------cccCCCCCCCCccCCCeEEEeecCcc--------------CCCCcccCc
Confidence 456899999999 999999999999 997 259999999999988421 123578999
Q ss_pred eeEee
Q 030671 151 QTIVG 155 (173)
Q Consensus 151 Q~~v~ 155 (173)
++.+.
T Consensus 68 ~~~v~ 72 (847)
T PRK08166 68 MTPAT 72 (847)
T ss_pred CCCCC
Confidence 99887
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.71 E-value=6.6e-05 Score=71.25 Aligned_cols=54 Identities=35% Similarity=0.561 Sum_probs=44.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (173)
+++.+++|+||| +||+++|+.+|. -|. +.|.|+.|.|+|. |.. +..+||
T Consensus 11 ~~~~~~~g~ti~-~a~~~~g~~ip~------~c~~~~~~~~g~C~~C~V~v~-g~~------------------~~~~aC 64 (652)
T PRK12814 11 RSVTAAPGTSIL-EAAASAGITIPT------LCFHQELEATGSCWMCIVEIK-GKN------------------RFVPAC 64 (652)
T ss_pred EEEEeCCcCcHH-HHHHHcCCcccc------ccCCCCCCCccccceeEEEEC-CCc------------------ceecCc
Confidence 467999999999 999999999998 776 3799999999984 431 246799
Q ss_pred eeEee
Q 030671 151 QTIVG 155 (173)
Q Consensus 151 Q~~v~ 155 (173)
++.+.
T Consensus 65 ~t~~~ 69 (652)
T PRK12814 65 STAVS 69 (652)
T ss_pred CCCCC
Confidence 99886
No 40
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.66 E-value=0.00012 Score=71.67 Aligned_cols=57 Identities=30% Similarity=0.433 Sum_probs=45.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEeeeeEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLACQTIVG 155 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (173)
+++.+++|+||| +||.++||.+|. +-....|...|.|+.|.|+|. |. ..+||++.+.
T Consensus 9 ~~v~~~~G~til-~aa~~~gi~iP~-lC~~~~~~~~G~Cr~C~VeV~-G~--------------------~~~AC~t~v~ 65 (819)
T PRK08493 9 KECEAQEGEYIL-NVARRNGIFIPA-ICYLSGCSPTLACRLCMVEAD-GK--------------------RVYSCNTKAK 65 (819)
T ss_pred EEEEeCCCCHHH-HHHHHcCCcccc-ccccCCCCCCccccceEEEEC-CE--------------------EeccccCCCC
Confidence 567899999999 999999999986 233346666799999999994 53 2569999886
No 41
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.65 E-value=0.00025 Score=59.60 Aligned_cols=43 Identities=28% Similarity=0.679 Sum_probs=32.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.+.++++|| ++|++.. .+. |....|+ .|.||.|.| +++|.
T Consensus 61 ~~~~v~~~~tLL-d~LR~~l-~lt---GtK~GC~-~G~CGACTV-lVdG~ 103 (217)
T PRK11433 61 EQLEVDTRTTLL-DALREHL-HLT---GTKKGCD-HGQCGACTV-LVNGR 103 (217)
T ss_pred EEEecCCCCcHH-HHHHHhc-CCC---CCCCCCC-CCCcCceEE-EECCE
Confidence 466889999999 9998753 221 2334899 899999999 45675
No 42
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=97.59 E-value=0.00017 Score=63.05 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=42.1
Q ss_pred CCCCcEEEEEEcCCCCCCCCccEEEEEe-cCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCc
Q 030671 53 PEKPEIELEFIAPRAGDDGSYPVERAKA-ISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGK 125 (173)
Q Consensus 53 ~~~~~i~v~f~~~~~~~d~~~~v~~v~v-~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~ 125 (173)
+.+|.+.|+.-+ +++++ ++|+||| +|++++||.||+ -|- -.|.|..|.|+|. |.
T Consensus 64 ~~~~~~~I~IDG-----------k~VeV~~~G~TIL-eAAr~~GI~IPt------LCy~~~L~p~G~CRlClVEVe-G~ 123 (297)
T PTZ00305 64 EHKPRAIMFVNK-----------RPVEIIPQEENLL-EVLEREGIRVPK------FCYHPILSVAGNCRMCLVQVD-GT 123 (297)
T ss_pred ccCCceEEEECC-----------EEEEecCCCChHH-HHHHHcCCCcCc------cccCCCCCCCCccceeEEEEC-CC
Confidence 445677777532 46788 8999999 999999999998 453 3478999999994 54
No 43
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.43 E-value=0.00031 Score=68.33 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCcccCC
Q 030671 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLN 129 (173)
Q Consensus 55 ~~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~ 129 (173)
.++|+|++-+ +++++++|+||| +|+..+||.+|+ -|. ..|.|.-|.|+|. |..
T Consensus 2 ~~~v~~~idg-----------~~~~~~~g~til-~aa~~~gi~ip~------~C~~~~l~~~g~Cr~C~Vev~-g~~--- 59 (797)
T PRK07860 2 PDLVTLTIDG-----------VEVSVPKGTLVI-RAAELLGIQIPR------FCDHPLLDPVGACRQCLVEVE-GQR--- 59 (797)
T ss_pred CceEEEEECC-----------EEEEeCCCChHH-HHHHHcCCCCCe------ecCCCCCCCCcccCccEEEEC-CCc---
Confidence 3568887642 567999999999 999999999998 664 3689999999994 431
Q ss_pred CCChHHHhccCCCCCCeEEeeeeEee
Q 030671 130 ERTNTELRYLKKKPESWRLACQTIVG 155 (173)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLaCQ~~v~ 155 (173)
+.+-||.+.+.
T Consensus 60 ---------------~~~~aC~t~v~ 70 (797)
T PRK07860 60 ---------------KPQASCTTTVT 70 (797)
T ss_pred ---------------ccccccCCCCC
Confidence 13558998887
No 44
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=97.35 E-value=0.00029 Score=66.13 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=45.0
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (173)
+++++++|+||| +|++++||++|+ -|. ..|.|..|.|+|. |... ....||
T Consensus 6 ~~~~~~~g~~il-~a~~~~gi~ip~------~C~~~~l~~~g~Cr~C~v~v~-g~~~-----------------~~~~aC 60 (603)
T TIGR01973 6 KELEVPKGTTVL-QACLSAGIEIPR------FCYHEKLSIAGNCRMCLVEVE-KFPD-----------------KPVASC 60 (603)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCccc------cCCCCCCCCCCccccCEEEEC-CCCC-----------------Cccccc
Confidence 578999999999 999999999998 884 3589999999985 4310 135689
Q ss_pred eeEee
Q 030671 151 QTIVG 155 (173)
Q Consensus 151 Q~~v~ 155 (173)
++.+.
T Consensus 61 ~~~~~ 65 (603)
T TIGR01973 61 ATPVT 65 (603)
T ss_pred CCCCC
Confidence 99887
No 45
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=97.20 E-value=0.00074 Score=64.86 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=36.2
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCC-----CceeecCcEEEEec
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCG-----GGGSCGTCIVEIID 123 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~-----G~G~CGTC~V~V~~ 123 (173)
+++++++|+||| +|++++||.||. -|- -.|.|..|.|+|..
T Consensus 9 ~~v~v~~g~til-~a~~~~gi~IP~------lCy~~~l~~~g~Cr~ClVev~~ 54 (687)
T PRK09130 9 KEIEVPDGYTLL-QACEAAGAEIPR------FCYHERLSIAGNCRMCLVEVKG 54 (687)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCcCc------ccCCCCCCCCCCCCCCEEEECC
Confidence 577999999999 999999999999 774 25899999999974
No 46
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.13 E-value=0.00079 Score=64.98 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=47.3
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCC-----ceeecCcEEEEecCcccCCCCChHHHhccCCCCCCeEEee
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEIIDGKDLLNERTNTELRYLKKKPESWRLAC 150 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G-----~G~CGTC~V~V~~G~~~l~~~t~~E~~~L~~~~~g~RLaC 150 (173)
+++++++|+||| +|++.+||.+|+ -|.- .|.|..|.|+|. |.. +.+.||
T Consensus 9 ~~~~~~~g~~il-~a~~~~g~~ip~------~c~~~~~~~~~~C~~C~v~v~-~~~------------------~~~~aC 62 (776)
T PRK09129 9 KKVEVPEGSMVI-EAADKAGIYIPR------FCYHKKLSIAANCRMCLVEVE-KAP------------------KPLPAC 62 (776)
T ss_pred EEEEeCCCCHHH-HHHHHcCCCCCc------ccCCCCCCCCCCcceeEEEEC-CCC------------------CcCccc
Confidence 567999999999 999999999998 7762 378999999985 331 135689
Q ss_pred eeEeeecCCCccEEEEe
Q 030671 151 QTIVGNKENSGKVVVQR 167 (173)
Q Consensus 151 Q~~v~~~e~~gdv~V~~ 167 (173)
.+.+. +|+.+...
T Consensus 63 ~~~~~----~gm~v~t~ 75 (776)
T PRK09129 63 ATPVT----DGMKVFTR 75 (776)
T ss_pred CCCCC----CCCEEEcC
Confidence 88876 45544443
No 47
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=96.83 E-value=0.003 Score=50.27 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=33.0
Q ss_pred EEEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.++++++|| +.|++. |+. +....|+ .|.||.|.|.|. |.
T Consensus 11 ~~~~~~~~~~Ll-~~LR~~lglt-----g~K~gC~-~G~CGACtVlvd-g~ 53 (148)
T TIGR03193 11 REDAVADNMLLV-DYLRDTVGLT-----GTKQGCD-GGECGACTVLVD-GR 53 (148)
T ss_pred EEeecCCCCcHH-HHHHHhcCCC-----CCCCCCC-CCCCCCCEEEEC-Ce
Confidence 467889999999 999874 432 3456999 899999999984 54
No 48
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=96.77 E-value=0.0034 Score=60.63 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=37.7
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecC
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G 124 (173)
.++.+++|+||| +|++++||+||+ |=.--.|+--|.|..|.|++..+
T Consensus 9 ~ei~v~~g~tvL-qAa~~aGi~IP~-fCyh~~ls~~GaCRmClVEveg~ 55 (693)
T COG1034 9 KEIEVPEGETVL-QAAREAGIDIPT-FCYHPRLSIAGACRMCLVEVEGA 55 (693)
T ss_pred EEEecCCCcHHH-HHHHHcCCCCCc-ccccCCCCcccceeEEEEEecCC
Confidence 578999999999 999999999998 12222445568999999999854
No 49
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=96.72 E-value=0.0079 Score=51.16 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCCCC-CccEEEEEec-CCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCcccCCCCChH
Q 030671 57 EIELEFIAPRAGDDG-SYPVERAKAI-SGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGKDLLNERTNT 134 (173)
Q Consensus 57 ~i~v~f~~~~~~~d~-~~~v~~v~v~-~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~~~l~~~t~~ 134 (173)
+.+|-..+|...++. ....++|+.. -|--+| |||...+-.+..+++++-+|+ .|.||+|.+.|-. .
T Consensus 48 tFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvL-DALiKIKnE~DptLTFRRSCR-EGICGSCAMNI~G-~--------- 115 (288)
T KOG3049|consen 48 TFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVL-DALIKIKNEMDPTLTFRRSCR-EGICGSCAMNING-T--------- 115 (288)
T ss_pred eEEEEecCCCCCCCCccceeeeecHHhcchHHH-HHHHHhhcccCCceehhhhhh-ccccccceeccCC-C---------
Confidence 344444555432332 2222344554 477789 999999999989999999999 8999999999873 3
Q ss_pred HHhccCCCCCCeEEeeeeEeeecCCCccEEEEeCCC
Q 030671 135 ELRYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQ 170 (173)
Q Consensus 135 E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~ 170 (173)
--|||-+.+...+. -...|-.+|+
T Consensus 116 -----------NtLACi~kId~n~s-K~~kIyPLPH 139 (288)
T KOG3049|consen 116 -----------NTLACICKIDQNES-KSTKIYPLPH 139 (288)
T ss_pred -----------ceeEEEEeeccCCc-ccceeecCcc
Confidence 36899988873333 3345555554
No 50
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=96.67 E-value=0.0055 Score=49.32 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=33.8
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.+.++++|| +.|++.|+. +....|+ .|.||.|.|.|. |.
T Consensus 18 ~~~~~~~~~~Ll-~~LR~~glt-----gtK~GC~-~G~CGACtVlvd-g~ 59 (159)
T PRK09908 18 FQLHAAPGTPLS-ELLREQGLL-----SVKQGCC-VGECGACTVLVD-GT 59 (159)
T ss_pred EEEecCCCCcHH-HHHHHcCCC-----CCCCCcC-CCCCCCcEEEEC-Cc
Confidence 467899999999 999987642 3445998 899999999984 54
No 51
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.23 E-value=0.009 Score=58.43 Aligned_cols=42 Identities=40% Similarity=0.618 Sum_probs=35.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCC-----ceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGG-----GGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G-----~G~CGTC~V~V~~G~ 125 (173)
+.+.+++|+||| ++|.++||.+|+ -|-- -++|-+|.|.+ +|.
T Consensus 13 ~~~~v~~G~tiL-~a~~~~gI~iP~------iCy~~~l~pi~sCd~ClVEi-dG~ 59 (978)
T COG3383 13 RSIEVEEGTTIL-RAANRNGIEIPH------ICYHESLGPIGSCDTCLVEI-DGK 59 (978)
T ss_pred eEEecCCChHHH-HHHHhcCCcccc------eeccCCCCcccccceEEEEe-cCc
Confidence 467899999999 999999999999 7752 26899999995 465
No 52
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=95.73 E-value=0.025 Score=45.13 Aligned_cols=40 Identities=28% Similarity=0.609 Sum_probs=31.0
Q ss_pred EEEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+++.+.++++|| +.|++. |+. +....|+ .|.||.|.|.|.
T Consensus 13 ~~~~~~~~~~Ll-~~LR~~~~lt-----gtK~gC~-~G~CGACtVlvd 53 (151)
T TIGR03198 13 WEVAAVPTTRLS-DLLRKELQLT-----GTKVSCG-IGRCGACSVLID 53 (151)
T ss_pred EEeecCCCcHHH-HHHHhccCCC-----CCCCCCC-CCcCCccEEEEC
Confidence 356788999999 888874 543 2334898 899999999995
No 53
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=94.90 E-value=0.04 Score=55.11 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=31.6
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.+.++++|| +.|++.|+. + ....|.|.|.||.|.|.|. |.
T Consensus 12 ~~~~~~~~~~l~-~~LR~~~~~--~---~k~g~c~~g~CGaCtv~~d-g~ 54 (956)
T PRK09800 12 QELTVNPGENVQ-KLLFNMGMH--S---VRNSDDGFGFAGSDAIIFN-GN 54 (956)
T ss_pred EEEecCCCCCHH-HHHHHCCCC--c---cccCCCCcccCCCCEEEEC-Ce
Confidence 467889999999 999985543 2 2234334899999999985 54
No 54
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=94.88 E-value=0.078 Score=42.64 Aligned_cols=42 Identities=26% Similarity=0.538 Sum_probs=32.6
Q ss_pred EEEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++++.++++|| ++|++. |+.- ....|+ .|.||.|-|.+. |.
T Consensus 13 ~~~~~~p~~~Ll-~~LRd~l~ltg-----tk~GC~-~g~CGACtVlvD-G~ 55 (156)
T COG2080 13 VELDVDPRTPLL-DVLRDELGLTG-----TKKGCG-HGQCGACTVLVD-GE 55 (156)
T ss_pred EEEEeCCCChHH-HHHHHhcCCCC-----cCCCCC-CccCCceEEEEC-Ce
Confidence 578999999999 988844 3332 335898 999999999886 54
No 55
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=93.64 E-value=0.079 Score=53.02 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred EEEEecCCchHHHHHHHHCCCCccccCCCcC-CCCCceeecCcEEEEecCc
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYATYGKVM-NCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~~~~~~-~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.+.++++|| +.|++.|+.- ... .|+ .|.||.|.|.|. |.
T Consensus 8 ~~~~~~~~~~l~-~~LR~~~l~~-----~k~~~c~-~g~CGaCtv~~d-g~ 50 (951)
T TIGR03313 8 QTLECKLGENVQ-TLLFNMGMHS-----VRNSDDG-FGFAGSDAILFN-GV 50 (951)
T ss_pred EEEecCCCCCHH-HHHHHCCCCC-----CcCCCCC-cccCCCCEEEEC-Ce
Confidence 466889999999 9999976531 223 465 899999999985 54
No 56
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=93.15 E-value=0.12 Score=51.03 Aligned_cols=41 Identities=32% Similarity=0.729 Sum_probs=31.9
Q ss_pred EEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 77 ~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
.+.+.++++|| +.|++. |+. +....|+ .|.||.|.|.|. |.
T Consensus 9 ~~~~~~~~~l~-~~lr~~~~~~-----~~k~gc~-~g~cgactv~~d-g~ 50 (848)
T TIGR03311 9 EVDVNEEKKLL-EFLREDLRLT-----GVKNGCG-EGACGACTVIVN-GK 50 (848)
T ss_pred EeeCCCCCcHH-HHHHHhcCCC-----cCCCCCC-CCCCCCcEEEEC-Ce
Confidence 45788999999 999864 542 2345998 899999999984 54
No 57
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.92 E-value=0.45 Score=47.64 Aligned_cols=83 Identities=16% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCCCCCCCCccEEEEEecCCchHHHHHHHHCCCCccc-c--CCCc--CCCCCceeecCcEEEEecCcccCC
Q 030671 55 KPEIELEFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYA-T--YGKV--MNCGGGGSCGTCIVEIIDGKDLLN 129 (173)
Q Consensus 55 ~~~i~v~f~~~~~~~d~~~~v~~v~v~~G~tLLrdal~~~Gi~l~~-~--~~~~--~~C~G~G~CGTC~V~V~~G~~~l~ 129 (173)
...|+|+|.+ +.+.+.+|+||. .||+.+|+.+-. + |+.. .-|. .|.|-.|.|.|..|....
T Consensus 10 ~~~~~~~~dg-----------~~~~~~~g~t~a-~al~a~g~~~~~~s~~~~~prg~~c~-~~~~~~c~v~i~~~~~~~- 75 (985)
T TIGR01372 10 SRPLRFTFDG-----------KSYSGFAGDTLA-SALLANGVHLVGRSFKYHRPRGILTA-GVEEPNALVTVGSGAQRE- 75 (985)
T ss_pred CCeEEEEECC-----------EEeecCCCCHHH-HHHHhCCCeeecccCCCCCCCccccc-CccCCCeEEEECCCcCCC-
Confidence 3468888753 466899999999 999999987553 1 2222 6787 588999999997552100
Q ss_pred CCChHHHhccCCCCCCeEEeeeeEeeecCCCccEEEEeCCCC
Q 030671 130 ERTNTELRYLKKKPESWRLACQTIVGNKENSGKVVVQRIPQW 171 (173)
Q Consensus 130 ~~t~~E~~~L~~~~~g~RLaCQ~~v~~~e~~gdv~V~~~p~~ 171 (173)
..+.||++.+. ..++|+....|
T Consensus 76 ---------------~~~~ac~~~~~-----~gm~~~~~~~~ 97 (985)
T TIGR01372 76 ---------------PNTRATTQELY-----DGLVATSQNRW 97 (985)
T ss_pred ---------------CCccceeEEcc-----cCCEEecccCC
Confidence 12568999887 44566665544
No 58
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=92.49 E-value=0.11 Score=43.12 Aligned_cols=35 Identities=31% Similarity=0.844 Sum_probs=29.2
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEEecC
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G 124 (173)
++|.+.|++..-+....+.|+ -|.||+|.|.+..+
T Consensus 198 ~~l~~~Gv~~~~~~e~~m~cg-~G~C~~C~~~~~~~ 232 (250)
T PRK00054 198 EILKEKKVPAYVSLERRMKCG-IGACGACVCDTETG 232 (250)
T ss_pred HHHHHcCCcEEEEEcccccCc-CcccCcCCcccCCC
Confidence 778889997776777889998 89999999996643
No 59
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.45 E-value=0.18 Score=46.67 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=31.3
Q ss_pred EEE-EecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 76 ERA-KAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 76 ~~v-~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+++ .++++++|| +.|++. |+. |....|+ .|.||.|.|.|.
T Consensus 10 ~~~~~~~~~~~ll-~~lR~~~~l~-----g~k~gC~-~G~CGaCtv~~~ 51 (467)
T TIGR02963 10 VTLSDVDPTRTLL-DYLREDAGLT-----GTKEGCA-EGDCGACTVVVG 51 (467)
T ss_pred EEeecCCCCCCHH-HHHHHhcCCC-----CCCcccC-CCCCCceEEEEE
Confidence 355 588999999 999874 543 3445998 899999999993
No 60
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.54 E-value=0.27 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=29.8
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEEec
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (173)
++|++.|++..-++...+.|+ .|.||+|.+...+
T Consensus 197 ~~L~~~Gv~~~~~~~~~~~~~-~g~c~~c~~~~~~ 230 (246)
T cd06218 197 ELAAERGVPCQVSLEERMACG-IGACLGCVVKTKD 230 (246)
T ss_pred HHHHhcCCCEEEEecccccCc-cceecccEEEeec
Confidence 778999999777788889998 8999999999885
No 61
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=91.23 E-value=0.19 Score=41.74 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=29.1
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEE
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V 121 (173)
++|.+.|++..-++..++.|+ .|.|+.|.|+.
T Consensus 197 ~~l~~~Gv~~~~s~e~~m~Cg-~G~C~~C~~~~ 228 (248)
T cd06219 197 ELTRPYGIPTVVSLNPIMVDG-TGMCGACRVTV 228 (248)
T ss_pred HHHHHcCCCEEEEecccccCc-cceeeeEEEEe
Confidence 778899999888888899998 99999999996
No 62
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=91.15 E-value=0.2 Score=42.63 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=30.5
Q ss_pred HHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 86 LLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 86 LLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+. +++.+.|+++..++..++.|+ .|.|+.|.|...
T Consensus 196 v~-~~l~~~gv~~~~sle~~M~CG-~G~C~~C~v~~~ 230 (281)
T PRK06222 196 VA-ELTKPYGIKTIVSLNPIMVDG-TGMCGACRVTVG 230 (281)
T ss_pred HH-HHHHhcCCCEEEECcccccCc-ccccceeEEEEC
Confidence 44 778899999988999999996 999999999754
No 63
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=90.64 E-value=0.14 Score=43.81 Aligned_cols=39 Identities=28% Similarity=0.670 Sum_probs=32.5
Q ss_pred chHHHHHHHHCCCC---ccccCCCcCCCCCceeecCcEEEEecC
Q 030671 84 EKLLRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 84 ~tLLrdal~~~Gi~---l~~~~~~~~~C~G~G~CGTC~V~V~~G 124 (173)
+.+. ++|.+.|++ +..++..++.|+ -|.||.|.|....|
T Consensus 225 ~~v~-~~L~~~Gv~~~~i~~~l~~~m~cg-~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVF-KELINRGYRPERIYVTLERRMRCG-IGKCGHCIVGTSTS 266 (289)
T ss_pred HHHH-HHHHHcCCCHHHEEEEehhccccc-CcccCCCccCCCCc
Confidence 3455 788999996 777888899998 99999999997655
No 64
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=89.62 E-value=0.45 Score=49.31 Aligned_cols=39 Identities=31% Similarity=0.675 Sum_probs=30.9
Q ss_pred EEEecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 77 RAKAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 77 ~v~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
...+.++++|| +.|++. |+. |....|+ .|.||.|.|.|.
T Consensus 14 ~~~~~~~~~ll-~~LR~~~~l~-----gtk~gC~-~G~CGaCtV~~~ 53 (1330)
T TIGR02969 14 EKNVDPETMLL-PYLRKKLRLT-----GTKYGCG-GGGCGACTVMIS 53 (1330)
T ss_pred eccCCCCCcHH-HHHHhhcCCC-----CCCCCcC-CCCCCCcEEEEC
Confidence 34788999999 999874 543 2345998 899999999996
No 65
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=89.20 E-value=0.6 Score=44.38 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=34.5
Q ss_pred EEEEecCCchHHHHHHHHCCCCcccc-CCCcCCCCCceeecCcEEEEecC
Q 030671 76 ERAKAISGEKLLRNIMLDNKIELYAT-YGKVMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~l~~~-~~~~~~C~G~G~CGTC~V~V~~G 124 (173)
+.|.+++|.|+| +|....|+++|-+ |-.+.+=. |-|-.|.|+|...
T Consensus 40 ~~v~v~pg~tvl-qac~~~gv~iprfcyh~rlsva--gncrmclveveks 86 (708)
T KOG2282|consen 40 QSVMVEPGTTVL-QACAKVGVDIPRFCYHERLSVA--GNCRMCLVEVEKS 86 (708)
T ss_pred eeEeeCCCcHHH-HHHHHhCCCcchhhhhhhhhhc--cceeEEEEEeccC
Confidence 456899999999 9999999999982 22232222 6788888888653
No 66
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=89.19 E-value=0.28 Score=40.27 Aligned_cols=36 Identities=28% Similarity=0.660 Sum_probs=28.4
Q ss_pred hHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 85 KLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 85 tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
.+. ++|.+.|++..-.+...+.|+ .|.||.|.|...
T Consensus 181 ~~~-~~L~~~g~~~~i~~e~f~~cg-~g~C~~C~v~~~ 216 (233)
T cd06220 181 KVL-EILDERGVRAQFSLERYMKCG-IGICGSCCIDPT 216 (233)
T ss_pred HHH-HHHHhcCCcEEEEecccccCc-CCCcCccEeccC
Confidence 444 788899995544667778898 999999999975
No 67
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=88.37 E-value=0.29 Score=40.91 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=28.7
Q ss_pred hHHHHHHHHCCCC---ccccCCCcCCCCCceeecCcEEE
Q 030671 85 KLLRNIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 85 tLLrdal~~~Gi~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (173)
.+. ++|.+.|++ +...+...+-|+ .|.||+|.|.
T Consensus 204 ~~~-~~L~~~Gv~~~~i~~~~~~~~~~~-~g~c~~c~~~ 240 (253)
T cd06221 204 FVA-KELLKLGVPEEQIWVSLERRMKCG-VGKCGHCQIG 240 (253)
T ss_pred HHH-HHHHHcCCCHHHEEEehhhccccC-CccccCcccC
Confidence 345 888999997 777788888998 9999999987
No 68
>PRK05802 hypothetical protein; Provisional
Probab=88.03 E-value=0.6 Score=40.93 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=27.3
Q ss_pred HHHHH--CCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 89 NIMLD--NKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 89 dal~~--~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+.+.+ .+|++..++..++.|| -|.||.|.|...
T Consensus 271 ~~l~~~~~~i~~~~Sle~~M~CG-~G~Cg~C~v~~~ 305 (320)
T PRK05802 271 EYLDKLNEKIKLSCSNNAKMCCG-EGICGACTVRYG 305 (320)
T ss_pred HHHhhhcCCceEEEeCCCeeeCc-CccCCeeEEEEC
Confidence 55555 6888777888899998 999999999964
No 69
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=86.57 E-value=0.38 Score=40.56 Aligned_cols=31 Identities=32% Similarity=0.899 Sum_probs=25.9
Q ss_pred HHHHHCCCC---ccccCCCcCCCCCceeecCcEEE
Q 030671 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 89 dal~~~Gi~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (173)
+.|.+.|++ +...+...+.|+ .|.||.|+|.
T Consensus 207 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 240 (261)
T TIGR02911 207 QELLKKGIKEENIWVSYERKMCCG-VGKCGHCKID 240 (261)
T ss_pred HHHHHcCCCHHHEEEEeccceecc-CcCCCCcccC
Confidence 678889995 556788889998 9999999886
No 70
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=85.29 E-value=0.43 Score=40.28 Aligned_cols=31 Identities=32% Similarity=0.842 Sum_probs=26.4
Q ss_pred HHHHHCCCC---ccccCCCcCCCCCceeecCcEEE
Q 030671 89 NIMLDNKIE---LYATYGKVMNCGGGGSCGTCIVE 120 (173)
Q Consensus 89 dal~~~Gi~---l~~~~~~~~~C~G~G~CGTC~V~ 120 (173)
+.|.+.|++ +..++...+.|+ .|.||+|.|.
T Consensus 209 ~~L~~~Gv~~~~i~~~~~~~m~cg-~g~c~~c~~~ 242 (263)
T PRK08221 209 LEFLKRGIKEENIWVSYERKMCCG-VGKCGHCKID 242 (263)
T ss_pred HHHHHcCCCHHHEEEEecceeEcc-CcccCCcccC
Confidence 778899995 556788889998 9999999976
No 71
>PLN00192 aldehyde oxidase
Probab=84.88 E-value=1.4 Score=45.83 Aligned_cols=39 Identities=23% Similarity=0.587 Sum_probs=30.7
Q ss_pred EE-EecCCchHHHHHHHHC-CCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 77 RA-KAISGEKLLRNIMLDN-KIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 77 ~v-~v~~G~tLLrdal~~~-Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
++ .+.++++|| +.|++. |+. |....|+ .|.||.|-|.|.
T Consensus 16 ~~~~~~p~~~Ll-~~LR~~~~lt-----gtK~gC~-~G~CGaCtV~v~ 56 (1344)
T PLN00192 16 ELSSVDPSTTLL-EFLRTQTPFK-----SVKLGCG-EGGCGACVVLLS 56 (1344)
T ss_pred EeccCCCCCcHH-HHHHHhhCCC-----CcCCCCC-CCcCCCcEEEEe
Confidence 45 588999999 999864 543 2345998 899999999995
No 72
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=83.92 E-value=1 Score=37.02 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=26.7
Q ss_pred HHHHHC--CCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 89 NIMLDN--KIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 89 dal~~~--Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+.|.+. ++++..++..++.|+ .|.||.|.+...
T Consensus 195 ~~l~~~g~~~~~~~s~~~~m~Cg-~G~C~~C~~~~~ 229 (243)
T cd06192 195 EALDEWLQLIKASVSNNSPMCCG-IGICGACTIETK 229 (243)
T ss_pred HHHHhhcCCceEEEECCccccCc-cccccceEEEeC
Confidence 556665 567777888899998 899999999854
No 73
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=78.88 E-value=1.8 Score=41.86 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=28.5
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEE
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEI 121 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V 121 (173)
+++.+.|++...++..++.|+ -|.||.|.|..
T Consensus 198 ~~l~~~gv~~~~Sle~~M~CG-~G~C~~C~v~~ 229 (752)
T PRK12778 198 LLTKKYGIPTIVSLNTIMVDG-TGMCGACRVTV 229 (752)
T ss_pred HHHHHcCCCEEEeCcccccCc-ccccCcceeEe
Confidence 777889999888899999997 99999999964
No 74
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=74.30 E-value=1.8 Score=27.05 Aligned_cols=19 Identities=53% Similarity=1.249 Sum_probs=14.4
Q ss_pred cCCCCCceeecCcEEEEecC
Q 030671 105 VMNCGGGGSCGTCIVEIIDG 124 (173)
Q Consensus 105 ~~~C~G~G~CGTC~V~V~~G 124 (173)
++.|+ -|.|+.|.+...++
T Consensus 3 ~M~CG-~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 3 RMACG-VGACGGCVVPVKDG 21 (40)
T ss_dssp --SSS-SSSS-TTEEECSST
T ss_pred cccCC-CcEeCCcEeeeecC
Confidence 46897 99999999998865
No 75
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=70.62 E-value=4.3 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=28.9
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
++|.+.|++...++...+.|+ -|.||.|.|.+.
T Consensus 864 ~~l~~~Gv~~~vSlE~~M~CG-~G~C~~C~v~~~ 896 (944)
T PRK12779 864 DLTKPYGVKTVASLNSIMVDA-TGMCGACMVPVT 896 (944)
T ss_pred HHHHHcCCCeEEeecccccCC-CeeeCeeeeeee
Confidence 678899999877888899997 999999999853
No 76
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=69.54 E-value=8.2 Score=35.74 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=28.0
Q ss_pred EecCCchHHHHHHH-HCCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 79 KAISGEKLLRNIML-DNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 79 ~v~~G~tLLrdal~-~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
.+++.+||| |-|+ +.+..=-. -.|. .|-||.|.|-|-
T Consensus 22 ~v~P~~TlL-d~LR~d~~ltGtK-----EGCA-EGDCGACTVlVg 59 (493)
T COG4630 22 DVPPTTTLL-DYLRLDRRLTGTK-----EGCA-EGDCGACTVLVG 59 (493)
T ss_pred cCCcchHHH-HHHHHhccccccc-----cccc-CCCcCceEEEEE
Confidence 788999999 9887 55554222 2787 899999999763
No 77
>PLN02906 xanthine dehydrogenase
Probab=66.83 E-value=5.8 Score=41.36 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=25.5
Q ss_pred chHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEec
Q 030671 84 EKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (173)
Q Consensus 84 ~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (173)
++|| +.|++.|+ . |....|+ .|.||.|.|.|..
T Consensus 2 ~~ll-~~LR~~~l--~---g~k~gC~-~g~CGaCtv~~~~ 34 (1319)
T PLN02906 2 QTLL-EYLRDLGL--T---GTKLGCG-EGGCGACTVMVSH 34 (1319)
T ss_pred CcHH-HHHHhCCC--C---CCCCCcC-CCCCCCeEEEECC
Confidence 6888 88887443 3 3456998 8999999999973
No 78
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=64.62 E-value=5.8 Score=40.16 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=28.0
Q ss_pred HHHHHCCCCccccCCCcCCCCCceeecCcEEEEe
Q 030671 89 NIMLDNKIELYATYGKVMNCGGGGSCGTCIVEII 122 (173)
Q Consensus 89 dal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~ 122 (173)
+++...|++..-++.-.+.|+ -|.||.|.|.+.
T Consensus 198 ~~~~~~gi~~~vSle~~M~cG-~G~Cg~C~v~~~ 230 (1006)
T PRK12775 198 ETTRPFGVKTMVSLNAIMVDG-TGMCGSCRVTVG 230 (1006)
T ss_pred HHHHHCCCcEEECChhheeCc-cceeCCCEeeeC
Confidence 667788998777788889997 999999999753
No 79
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=40.18 E-value=30 Score=36.06 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=29.6
Q ss_pred EecCCchHHHHHHHHCCCCccccCCCcCCCCCceeecCcEEEEec
Q 030671 79 KAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVEIID 123 (173)
Q Consensus 79 ~v~~G~tLLrdal~~~Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~ 123 (173)
.++++.||+ . .+|....+-+ .-+.|+ .|.||.|.|-|..
T Consensus 16 ~vdP~~TL~-~-fLR~k~~ltg---tKlgC~-EGGCGaCtv~ls~ 54 (1257)
T KOG0430|consen 16 LLPPDLTLN-T-FLREKLGLTG---TKLGCG-EGGCGACTVVLSK 54 (1257)
T ss_pred cCCcchhHH-H-HHHHhcCCcc---eeeccC-CCCccceEEEEec
Confidence 588889987 5 5555576654 345898 7999999999875
No 80
>PRK01777 hypothetical protein; Validated
Probab=38.55 E-value=87 Score=22.92 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=20.8
Q ss_pred EEEEEecCCchHHHHHHHHCCCCcc
Q 030671 75 VERAKAISGEKLLRNIMLDNKIELY 99 (173)
Q Consensus 75 v~~v~v~~G~tLLrdal~~~Gi~l~ 99 (173)
...+++++|.|+- ||+...||...
T Consensus 18 ~~~l~vp~GtTv~-dal~~sgi~~~ 41 (95)
T PRK01777 18 LQRLTLQEGATVE-EAIRASGLLEL 41 (95)
T ss_pred EEEEEcCCCCcHH-HHHHHcCCCcc
Confidence 3578999999997 99999999755
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=29.91 E-value=23 Score=36.37 Aligned_cols=30 Identities=30% Similarity=0.709 Sum_probs=23.3
Q ss_pred CCCccccCCCcCCCCCceeecCcEEEEecCc
Q 030671 95 KIELYATYGKVMNCGGGGSCGTCIVEIIDGK 125 (173)
Q Consensus 95 Gi~l~~~~~~~~~C~G~G~CGTC~V~V~~G~ 125 (173)
+++.-.+..-.|.|.-.|.||.|++.+ .|+
T Consensus 961 ~~~~i~svns~M~c~m~giC~qC~~~~-~G~ 990 (1028)
T PRK06567 961 NTEIIVSVNSSMQCMMKGICGQCIQKV-KGE 990 (1028)
T ss_pred CCcEEEecCcHHHHHhhhhhhhheEEe-cCe
Confidence 555555666678998789999999999 454
No 82
>PF09791 Oxidored-like: Oxidoreductase-like protein, N-terminal; InterPro: IPR019180 This entry represents the N-terminal domain of various oxidoreductase-like proteins whose exact function is, as yet, unknown.
Probab=21.88 E-value=61 Score=21.02 Aligned_cols=14 Identities=36% Similarity=1.282 Sum_probs=9.8
Q ss_pred CCCCceeecCcEEEE
Q 030671 107 NCGGGGSCGTCIVEI 121 (173)
Q Consensus 107 ~C~G~G~CGTC~V~V 121 (173)
.|-|+| |..|.-.+
T Consensus 17 ~CCgSG-C~~CVwd~ 30 (48)
T PF09791_consen 17 ECCGSG-CAPCVWDV 30 (48)
T ss_pred cccccC-CccchhHH
Confidence 677677 98886433
No 83
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=20.95 E-value=54 Score=23.73 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=18.0
Q ss_pred EEEEecCCchHHHHHHHHCCCC
Q 030671 76 ERAKAISGEKLLRNIMLDNKIE 97 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~~~Gi~ 97 (173)
..+.+++|.|+. +|+...|+.
T Consensus 16 ~~l~vp~GtTv~-~Ai~~Sgi~ 36 (84)
T PF03658_consen 16 LTLEVPEGTTVA-QAIEASGIL 36 (84)
T ss_dssp EEEEEETT-BHH-HHHHHHTHH
T ss_pred EEEECCCcCcHH-HHHHHcCch
Confidence 578999999998 999999985
No 84
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.71 E-value=1.3e+02 Score=20.90 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=13.1
Q ss_pred EEEEecCCchHHHHHHH
Q 030671 76 ERAKAISGEKLLRNIML 92 (173)
Q Consensus 76 ~~v~v~~G~tLLrdal~ 92 (173)
..|.+.+|+|+. |+|.
T Consensus 12 t~V~vrpg~ti~-d~L~ 27 (72)
T cd01760 12 TVVPVRPGMSVR-DVLA 27 (72)
T ss_pred EEEEECCCCCHH-HHHH
Confidence 467899999987 8774
Done!