BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030672
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 100 VGC------GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALS 143
VGC GD KDVIC V+++ D LV+GS G G R++++ + +S
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVS 147
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 66 KAVEKYASESVNSVMNRAEAVYRNFQNNIH-----VKRVVGCGDAKDVICGTVEKLEADT 120
K+VE++ +E N + A+ N + + VK ++ G + I E D
Sbjct: 64 KSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDI 123
Query: 121 LVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155
++MGSHG K+++L +++ + S L
Sbjct: 124 IIMGSHGKT---NLKEILLGSVTENVIKKSNKPVL 155
>pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|B Chain B, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|C Chain C, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|D Chain D, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
Length = 141
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 69 EKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126
++ ++E+ ++++ AE+V +++ G GD V+ +E+ + D LV G H
Sbjct: 59 DRISTETQKALLDLAESVDYPIS-----EKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 50 HSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI 109
H +FD ++ DV+K V Y++ ++++R N + G G DV
Sbjct: 73 HPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNL-------VIEGTGRTTDVP 125
Query: 110 CGTVEKLEA 118
T L+A
Sbjct: 126 IQTATMLQA 134
>pdb|1SXE|A Chain A, The Solution Structure Of The Pointed (Pnt) Domain From
The Transcrition Factor Erg
Length = 97
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MNTNERRVVVAVDESEESM----HALSWCLNNLFSPDTN 35
M TNERRV+V D + S L W + PD N
Sbjct: 14 MTTNERRVIVPADPTLWSTDHVRQWLEWAVKEYGLPDVN 52
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQ-------LILAALSFQFLPNSQ 151
+V G + D IC + D L +G H +G I + K+ L++ L+ + +
Sbjct: 344 IVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTD 403
Query: 152 PSRLFGDLILFQILQGSLRK 171
S LF +L I L K
Sbjct: 404 KSSLFEELQSLDIFLAELYK 423
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQ-------LILAALSFQFLPNSQ 151
+V G + D IC + D L +G H +G I + K+ L++ L+ + +
Sbjct: 343 IVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTD 402
Query: 152 PSRLFGDLILFQILQGSLRK 171
S LF +L I L K
Sbjct: 403 KSSLFEELQSLDIFLAELYK 422
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQ-------LILAALSFQFLPNSQ 151
+V G + D IC + D L +G H +G I + K+ L++ L+ + +
Sbjct: 344 IVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTD 403
Query: 152 PSRLFGDLILFQILQGSLRK 171
S LF +L I L K
Sbjct: 404 KSSLFEELQSLDIFLAELYK 423
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQ-------LILAALSFQFLPNSQ 151
+V G + D IC + D L +G H +G I + K+ L++ L+ + +
Sbjct: 344 IVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIPELAQELHVWTD 403
Query: 152 PSRLFGDLILFQILQGSLRK 171
S LF +L I L K
Sbjct: 404 KSSLFEELQSLDIFLAELYK 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,473,770
Number of Sequences: 62578
Number of extensions: 154923
Number of successful extensions: 339
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 10
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)