BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030672
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 32/161 (19%)
Query: 1 MNTNERRVVVAVDESE---------ESMHALSWCLNNLFSPDTNN-TLVLLYVKPPLPVH 50
M + +V+VAV+ S A W L + +T++ ++LL+V+
Sbjct: 1 MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQ------ 54
Query: 51 SSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY--RNFQNNIHVKRVVGC------ 102
D G+ + + + E + + N+A+ ++ F N H + VGC
Sbjct: 55 -VVDEDGFDDVDSIYASPEDFRDMRQS---NKAKGLHLLEFFVNKCH-EIGVGCEAWIKT 109
Query: 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALS 143
GD KDVIC V+++ D LV+GS G G R++++ + +S
Sbjct: 110 GDPKDVICQEVKRVRPDFLVVGSRGLG---RFQKVFVGTVS 147
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF 130
E+V ++ A+AV+ Q I K + G A IC +++ AD +VMG G G
Sbjct: 78 EAVAKLLEAAQAVFS--QQGIATKTIEREGMASFTICDVADEVNADLIVMGCRGLGL 132
>sp|Q6DG22|ADA_DANRE Adenosine deaminase OS=Danio rerio GN=ada PE=2 SV=2
Length = 359
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 60 FSNDVIKAVEKYASESVN--SVMNRAEAVYRNFQNNIHVKRVVGCGD--AKDVICGTVEK 115
F D + A++ ES+N S +A ++N+H R V G+ V+ VE
Sbjct: 172 FHKDGVVAIDLAGDESMNCESYPGHKKAFEEAVRSNVH--RTVHAGEVGPASVVREAVEV 229
Query: 116 LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157
L+A+ + G H YKQL+ + F+ P S SRL G
Sbjct: 230 LKAERIGHGYHTLEDQNLYKQLLHQNMHFEMCPVS--SRLTG 269
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP---LPVHSSFDAAGYIFSNDV 64
V VA++ ++S + + W L F P+ LLYV+PP +P A DV
Sbjct: 24 VAVAINGKKKSKYVVFWALEK-FIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDV 82
Query: 65 IKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96
+ A ++ S N ++ + ++ + + V
Sbjct: 83 VSAYKQELDWSANEMLRPYKKMFERRKVQVEV 114
>sp|P21969|D5_FOWPN Primase D5 OS=Fowlpox virus (strain NVSL) GN=FPV058 PE=3 SV=2
Length = 791
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 90 FQNNIHVKRVVGCGDAKDVICGTVEKLEADTL 121
F N+H+KRVV C + D C T +K+ +D +
Sbjct: 545 FIANMHLKRVVFCSELPDFSCNTSKKIRSDNI 576
>sp|A6LIG0|CH60_PARD8 60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 /
DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1
Length = 546
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 63 DVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGD 104
D+ + ++K ++ V S+ N+AEAV F+ HV ++ GD
Sbjct: 114 DLKRGIDKAVAKVVESIANQAEAVGDKFEKIEHVAKISANGD 155
>sp|Q7ZUX6|DOHH_DANRE Deoxyhypusine hydroxylase OS=Danio rerio GN=dohh PE=2 SV=1
Length = 305
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 12 VDESEESMHALSWCLNNLFSPDTNNTLVLLYV---KPPLPVHSSFDAAGYIFSNDVIKAV 68
VDES H L++CL + TL + + P+ H + +A G I + V++ +
Sbjct: 48 VDESALLKHELAYCLGQMQDESAIPTLEAVLKDTNQEPMVRHEAGEALGAIGNPKVLELL 107
Query: 69 EKYASESVNSVMNRAEAVYRNFQ 91
+KYA + V V + + +
Sbjct: 108 KKYAEDPVIEVAETCQLAVKRLE 130
>sp|Q297S2|DOHH_DROPS Deoxyhypusine hydroxylase OS=Drosophila pseudoobscura pseudoobscura
GN=nero PE=3 SV=1
Length = 302
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 13 DESEESMHALSWCLNNLFSPDTNNTLVLLY---VKPPLPVHSSFDAAGYIFSNDVIKAVE 69
D+S H L++CL + P L + + P+ H + +A G I DV+ +E
Sbjct: 49 DDSALLKHELAYCLGQMQDPTALEILTKVLKDTTQEPMVRHEAAEAMGAIGHADVLAILE 108
Query: 70 KYASESVNSV 79
+Y + V V
Sbjct: 109 EYKKDPVVEV 118
>sp|P26674|STE6_SCHPO Protein ste6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ste6 PE=4 SV=1
Length = 911
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 69 EKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128
EK+ +++NS+ + E + +N QN+IH V G + +++K +V G
Sbjct: 96 EKHGVQAINSIPSSEEFLRKNLQNDIH-HLVKGILTTAAAVSQSIKKEGTQVIVFGIETV 154
Query: 129 -GFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159
+ + +IL+ L FL S+ +++F L
Sbjct: 155 RSMVLSFPLIILSTLDENFL--SEVAQVFSSL 184
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 66 KAVEKYASESVNSVMNRAEAVYRNFQNNIH-----VKRVVGCGDAKDVICGTVEKLEADT 120
K+VE++ +E N + A+ N + + VK ++ G + I E D
Sbjct: 64 KSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDI 123
Query: 121 LVMGSHGYGFIKRYKQLILAALSFQFLPNS 150
++MGSHG K+++L +++ + S
Sbjct: 124 IIMGSHGKT---NLKEILLGSVTENVIKKS 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,142,799
Number of Sequences: 539616
Number of extensions: 2369138
Number of successful extensions: 5555
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5552
Number of HSP's gapped (non-prelim): 11
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)