Query 030672
Match_columns 173
No_of_seqs 130 out of 1099
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 6.1E-26 1.3E-30 157.4 14.8 138 5-157 2-141 (142)
2 PRK15005 universal stress prot 99.9 2.8E-25 6E-30 154.2 15.0 140 5-157 2-143 (144)
3 cd01989 STK_N The N-terminal d 99.9 5.5E-25 1.2E-29 153.1 15.7 139 7-157 1-143 (146)
4 PRK09982 universal stress prot 99.9 8.1E-25 1.7E-29 151.9 12.1 138 5-160 3-140 (142)
5 PRK15118 universal stress glob 99.9 1.5E-23 3.3E-28 145.6 13.6 137 4-159 2-139 (144)
6 PRK10116 universal stress prot 99.9 1.2E-22 2.5E-27 140.8 13.6 137 4-159 2-139 (142)
7 PF00582 Usp: Universal stress 99.9 1.1E-22 2.5E-27 138.8 12.7 138 5-157 2-139 (140)
8 cd01988 Na_H_Antiporter_C The 99.9 2.8E-22 6E-27 136.8 14.3 130 7-157 1-131 (132)
9 cd01987 USP_OKCHK USP domain i 99.9 8.9E-22 1.9E-26 133.3 12.9 122 7-157 1-123 (124)
10 PRK11175 universal stress prot 99.9 1.1E-21 2.4E-26 151.8 14.8 143 5-159 3-146 (305)
11 cd00293 USP_Like Usp: Universa 99.9 6.6E-20 1.4E-24 123.7 14.9 129 7-156 1-129 (130)
12 PRK11175 universal stress prot 99.8 1.7E-20 3.7E-25 145.2 9.8 144 4-162 151-303 (305)
13 COG0589 UspA Universal stress 99.8 2.8E-18 6.1E-23 119.4 15.4 148 1-158 1-151 (154)
14 PRK12652 putative monovalent c 99.7 6.3E-16 1.4E-20 121.3 14.4 108 1-128 1-124 (357)
15 PRK10490 sensor protein KdpD; 99.3 3.5E-11 7.6E-16 105.3 13.0 122 4-157 249-372 (895)
16 COG2205 KdpD Osmosensitive K+ 99.3 1E-10 2.2E-15 98.5 12.5 117 5-151 248-365 (890)
17 cd01984 AANH_like Adenine nucl 98.6 2.5E-07 5.4E-12 58.4 7.5 85 8-157 1-86 (86)
18 PLN03159 cation/H(+) antiporte 97.7 0.00044 9.6E-09 60.7 11.3 150 4-156 457-612 (832)
19 PLN03159 cation/H(+) antiporte 97.3 0.0064 1.4E-07 53.6 12.7 119 4-127 629-752 (832)
20 TIGR02432 lysidine_TilS_N tRNA 97.2 0.0094 2E-07 42.9 11.1 96 7-131 1-113 (189)
21 PF01171 ATP_bind_3: PP-loop f 97.1 0.038 8.3E-07 39.6 12.7 96 7-131 1-110 (182)
22 cd01992 PP-ATPase N-terminal d 96.8 0.059 1.3E-06 38.5 11.9 97 7-132 1-111 (185)
23 PRK10696 tRNA 2-thiocytidine b 96.2 0.18 3.9E-06 38.3 11.9 100 2-131 26-145 (258)
24 TIGR00591 phr2 photolyase PhrI 95.8 0.26 5.7E-06 40.6 11.8 87 18-127 37-123 (454)
25 cd01993 Alpha_ANH_like_II This 95.6 0.33 7.2E-06 34.5 10.6 95 7-128 1-117 (185)
26 PRK12342 hypothetical protein; 95.6 0.2 4.2E-06 38.1 9.5 85 13-128 32-120 (254)
27 COG2086 FixA Electron transfer 94.9 0.25 5.4E-06 37.7 8.3 86 11-128 32-122 (260)
28 PF01012 ETF: Electron transfe 94.9 0.71 1.5E-05 32.4 10.2 87 7-127 1-100 (164)
29 PRK03359 putative electron tra 94.6 0.5 1.1E-05 36.0 9.2 87 13-128 33-123 (256)
30 PF00875 DNA_photolyase: DNA p 94.5 0.26 5.6E-06 34.7 7.2 85 20-128 15-99 (165)
31 COG0037 MesJ tRNA(Ile)-lysidin 94.0 1.8 3.9E-05 33.3 11.5 98 6-132 22-135 (298)
32 TIGR02765 crypto_DASH cryptoch 92.6 2.2 4.7E-05 34.9 10.4 92 19-129 16-108 (429)
33 PRK05253 sulfate adenylyltrans 92.3 2.6 5.7E-05 32.9 10.1 95 4-129 26-139 (301)
34 PF02601 Exonuc_VII_L: Exonucl 91.5 0.86 1.9E-05 35.7 6.7 61 94-156 44-112 (319)
35 TIGR00268 conserved hypothetic 91.3 5.2 0.00011 30.3 10.8 36 4-45 11-46 (252)
36 COG0041 PurE Phosphoribosylcar 91.2 1.8 3.8E-05 30.3 7.1 53 79-133 17-73 (162)
37 PRK10660 tilS tRNA(Ile)-lysidi 90.7 4.7 0.0001 33.2 10.5 68 4-100 14-82 (436)
38 TIGR03556 photolyase_8HDF deox 90.6 3.1 6.6E-05 34.6 9.4 85 19-127 16-100 (471)
39 PRK13820 argininosuccinate syn 90.3 7.4 0.00016 31.7 11.0 37 4-45 1-38 (394)
40 TIGR00640 acid_CoA_mut_C methy 89.5 1.4 3E-05 30.1 5.5 68 83-159 22-92 (132)
41 cd02070 corrinoid_protein_B12- 89.0 1.2 2.6E-05 32.5 5.3 74 83-164 102-178 (201)
42 cd02067 B12-binding B12 bindin 88.8 2.4 5.2E-05 27.9 6.3 72 82-161 18-91 (119)
43 PRK00286 xseA exodeoxyribonucl 88.1 2.3 5.1E-05 34.9 6.9 61 94-156 165-229 (438)
44 TIGR02039 CysD sulfate adenyly 88.0 11 0.00024 29.4 10.6 41 5-47 19-59 (294)
45 PF00448 SRP54: SRP54-type pro 87.7 8.3 0.00018 28.0 8.9 92 8-133 5-99 (196)
46 cd02071 MM_CoA_mut_B12_BD meth 87.5 2.2 4.8E-05 28.4 5.5 69 82-159 18-89 (122)
47 cd01985 ETF The electron trans 87.3 8.6 0.00019 27.3 10.0 85 7-128 1-102 (181)
48 TIGR01162 purE phosphoribosyla 85.7 8.6 0.00019 27.0 7.7 53 79-133 13-69 (156)
49 TIGR00237 xseA exodeoxyribonuc 85.3 4.6 0.0001 33.2 7.2 61 94-156 159-224 (432)
50 COG0299 PurN Folate-dependent 85.3 12 0.00027 27.3 9.3 82 6-125 1-87 (200)
51 PRK12563 sulfate adenylyltrans 84.9 17 0.00037 28.6 10.0 41 5-47 37-77 (312)
52 cd01990 Alpha_ANH_like_I This 84.8 12 0.00027 26.9 10.2 87 8-128 1-106 (202)
53 PRK14664 tRNA-specific 2-thiou 84.5 20 0.00043 28.9 11.6 38 1-44 1-38 (362)
54 PRK14665 mnmA tRNA-specific 2- 84.5 20 0.00042 28.9 11.5 94 1-127 1-123 (360)
55 cd02072 Glm_B12_BD B12 binding 84.0 6.4 0.00014 26.7 6.2 65 86-159 22-89 (128)
56 PF02844 GARS_N: Phosphoribosy 83.8 1.2 2.5E-05 28.9 2.5 50 104-163 49-98 (100)
57 PRK02261 methylaspartate mutas 82.2 5.6 0.00012 27.2 5.6 69 83-160 23-94 (137)
58 cd01995 ExsB ExsB is a transcr 81.5 15 0.00034 25.6 10.1 86 7-128 1-87 (169)
59 PF02310 B12-binding: B12 bind 81.5 12 0.00025 24.4 6.9 71 81-160 18-90 (121)
60 TIGR02370 pyl_corrinoid methyl 81.4 6.9 0.00015 28.5 6.1 73 83-164 104-180 (197)
61 TIGR01501 MthylAspMutase methy 80.3 10 0.00022 25.9 6.3 67 83-158 21-90 (134)
62 PRK00109 Holliday junction res 80.0 3 6.4E-05 28.6 3.6 53 105-157 42-95 (138)
63 TIGR00930 2a30 K-Cl cotranspor 79.5 51 0.0011 30.3 12.2 96 6-127 576-677 (953)
64 PRK06029 3-octaprenyl-4-hydrox 78.9 4.5 9.7E-05 29.3 4.4 37 5-43 1-37 (185)
65 PF00731 AIRC: AIR carboxylase 78.9 19 0.00042 25.1 7.4 53 79-133 15-71 (150)
66 TIGR00655 PurU formyltetrahydr 78.1 30 0.00064 26.8 9.2 85 4-128 83-171 (280)
67 cd01714 ETF_beta The electron 77.0 26 0.00056 25.6 9.0 35 9-45 28-62 (202)
68 KOG2697 Histidinol dehydrogena 76.7 35 0.00075 26.9 8.8 107 1-129 240-346 (446)
69 PRK06027 purU formyltetrahydro 76.2 34 0.00074 26.5 9.5 85 4-128 88-176 (286)
70 TIGR00032 argG argininosuccina 76.1 41 0.0009 27.4 10.3 34 7-46 1-34 (394)
71 cd05565 PTS_IIB_lactose PTS_II 75.7 12 0.00025 24.2 5.2 67 79-161 16-82 (99)
72 PF03746 LamB_YcsF: LamB/YcsF 75.5 33 0.00072 26.0 9.0 107 8-128 30-146 (242)
73 KOG1650 Predicted K+/H+-antipo 75.2 17 0.00038 32.3 7.7 42 5-48 614-655 (769)
74 cd01713 PAPS_reductase This do 74.8 24 0.00052 24.1 10.2 37 7-46 1-37 (173)
75 COG1570 XseA Exonuclease VII, 73.8 14 0.00029 30.6 6.2 61 94-156 165-230 (440)
76 cd02069 methionine_synthase_B1 73.4 15 0.00033 27.1 6.0 75 83-166 108-184 (213)
77 PRK13010 purU formyltetrahydro 73.2 42 0.00091 26.1 9.6 85 4-128 92-180 (289)
78 COG2379 GckA Putative glycerat 73.1 50 0.0011 27.0 9.4 53 103-156 257-312 (422)
79 COG0541 Ffh Signal recognition 73.0 43 0.00092 27.8 8.8 92 8-133 104-198 (451)
80 PRK10867 signal recognition pa 72.8 48 0.001 27.4 9.3 90 9-131 105-197 (433)
81 PLN00200 argininosuccinate syn 72.2 53 0.0012 26.9 11.5 37 5-46 5-41 (404)
82 PF10087 DUF2325: Uncharacteri 71.8 22 0.00049 22.4 6.1 69 79-158 11-82 (97)
83 cd01712 ThiI ThiI is required 71.6 32 0.0007 24.2 11.5 35 7-47 1-35 (177)
84 PRK08185 hypothetical protein; 70.7 13 0.00027 28.9 5.2 60 94-156 13-73 (283)
85 TIGR00959 ffh signal recogniti 70.6 58 0.0013 26.9 9.3 90 9-131 104-196 (428)
86 cd02065 B12-binding_like B12 b 70.5 15 0.00033 23.9 5.1 69 83-160 19-89 (125)
87 COG0415 PhrB Deoxyribodipyrimi 70.5 54 0.0012 27.4 9.1 84 19-127 17-100 (461)
88 TIGR00273 iron-sulfur cluster- 70.3 24 0.00053 29.1 7.1 59 65-125 38-96 (432)
89 PRK05579 bifunctional phosphop 70.3 52 0.0011 26.9 8.9 36 4-42 5-40 (399)
90 TIGR00250 RNAse_H_YqgF RNAse H 69.4 8.4 0.00018 26.1 3.6 51 104-158 35-90 (130)
91 PRK12857 fructose-1,6-bisphosp 69.0 17 0.00038 28.2 5.7 61 94-156 18-79 (284)
92 PRK11070 ssDNA exonuclease Rec 69.0 58 0.0013 28.0 9.2 35 94-128 128-162 (575)
93 PF00885 DMRL_synthase: 6,7-di 68.7 26 0.00056 24.2 6.0 91 74-167 16-118 (144)
94 COG0552 FtsY Signal recognitio 68.2 60 0.0013 25.9 9.7 51 79-132 182-236 (340)
95 PRK10674 deoxyribodipyrimidine 67.6 72 0.0016 26.6 9.9 89 18-127 16-106 (472)
96 PF01261 AP_endonuc_2: Xylose 67.4 38 0.00082 24.0 7.1 80 19-119 70-157 (213)
97 PRK07313 phosphopantothenoylcy 67.3 14 0.0003 26.6 4.6 35 5-42 1-35 (182)
98 PRK12737 gatY tagatose-bisphos 67.3 20 0.00043 27.8 5.7 61 94-156 18-79 (284)
99 PRK06801 hypothetical protein; 67.2 21 0.00046 27.7 5.9 61 94-156 18-79 (286)
100 cd03364 TOPRIM_DnaG_primases T 67.1 19 0.00041 21.7 4.6 35 5-41 43-77 (79)
101 PLN00118 isocitrate dehydrogen 66.1 30 0.00064 28.0 6.6 30 15-45 183-212 (372)
102 PRK06806 fructose-bisphosphate 66.0 24 0.00051 27.4 5.9 61 94-156 18-79 (281)
103 TIGR01858 tag_bisphos_ald clas 65.2 24 0.00052 27.4 5.8 61 94-156 16-77 (282)
104 PRK13982 bifunctional SbtC-lik 65.0 72 0.0016 26.8 8.8 35 5-42 70-104 (475)
105 PLN02828 formyltetrahydrofolat 64.8 63 0.0014 24.9 9.7 88 4-128 69-158 (268)
106 PF03808 Glyco_tran_WecB: Glyc 64.8 34 0.00073 24.2 6.2 69 79-156 60-131 (172)
107 PRK09195 gatY tagatose-bisphos 64.4 22 0.00048 27.6 5.5 61 94-156 18-79 (284)
108 PF07355 GRDB: Glycine/sarcosi 64.3 12 0.00026 29.8 4.1 67 94-163 48-123 (349)
109 COG0452 Dfp Phosphopantothenoy 64.2 41 0.00089 27.4 7.2 39 4-45 3-41 (392)
110 TIGR00169 leuB 3-isopropylmala 63.8 35 0.00075 27.4 6.6 28 16-45 163-190 (349)
111 PRK12738 kbaY tagatose-bisphos 63.5 27 0.00059 27.1 5.8 60 94-156 18-79 (286)
112 PF07302 AroM: AroM protein; 63.5 60 0.0013 24.3 12.6 129 18-163 72-214 (221)
113 COG1606 ATP-utilizing enzymes 63.3 67 0.0014 24.7 10.5 89 5-127 17-123 (269)
114 PRK09222 isocitrate dehydrogen 63.1 36 0.00077 28.6 6.7 29 16-45 149-177 (482)
115 PRK10481 hypothetical protein; 62.6 62 0.0013 24.2 7.4 48 105-162 167-217 (224)
116 PF13662 Toprim_4: Toprim doma 62.2 13 0.00029 22.5 3.3 34 5-40 46-79 (81)
117 PF03652 UPF0081: Uncharacteri 61.7 12 0.00026 25.5 3.3 59 95-157 27-93 (135)
118 KOG0780 Signal recognition par 61.6 91 0.002 25.7 8.6 52 79-132 144-198 (483)
119 cd03557 L-arabinose_isomerase 61.2 79 0.0017 26.6 8.5 47 104-159 49-99 (484)
120 cd01994 Alpha_ANH_like_IV This 61.1 61 0.0013 23.5 11.3 115 7-155 1-122 (194)
121 TIGR02924 ICDH_alpha isocitrat 60.6 33 0.00071 28.7 6.0 29 16-45 145-173 (473)
122 TIGR00696 wecB_tagA_cpsF bacte 60.6 51 0.0011 23.6 6.5 68 79-157 60-131 (177)
123 TIGR00175 mito_nad_idh isocitr 60.2 41 0.00089 26.8 6.4 29 16-45 145-173 (333)
124 PRK00772 3-isopropylmalate deh 59.8 91 0.002 25.1 9.0 29 16-46 166-194 (358)
125 PRK08997 isocitrate dehydrogen 59.8 69 0.0015 25.6 7.5 30 15-45 146-175 (334)
126 PF02441 Flavoprotein: Flavopr 59.4 20 0.00043 24.0 4.0 33 6-41 1-33 (129)
127 COG1597 LCB5 Sphingosine kinas 59.3 42 0.0009 26.2 6.3 49 75-125 17-66 (301)
128 TIGR00342 thiazole biosynthesi 59.0 95 0.002 25.0 12.1 36 4-45 171-206 (371)
129 PF09370 TIM-br_sig_trns: TIM- 58.8 16 0.00035 28.0 3.8 72 78-157 2-87 (268)
130 PF13167 GTP-bdg_N: GTP-bindin 58.8 45 0.00099 21.3 7.8 49 76-126 6-66 (95)
131 PRK08305 spoVFB dipicolinate s 58.3 31 0.00067 25.2 5.0 39 1-42 1-40 (196)
132 cd00947 TBP_aldolase_IIB Tagat 58.2 30 0.00065 26.8 5.2 61 94-156 13-74 (276)
133 PRK13398 3-deoxy-7-phosphohept 58.2 83 0.0018 24.2 9.9 101 17-156 39-139 (266)
134 COG1927 Mtd Coenzyme F420-depe 58.1 47 0.001 24.7 5.8 45 107-158 50-95 (277)
135 PRK00143 mnmA tRNA-specific 2- 57.8 96 0.0021 24.7 11.1 34 6-45 1-34 (346)
136 PRK05406 LamB/YcsF family prot 57.2 84 0.0018 23.9 8.6 100 14-127 38-147 (246)
137 PLN02331 phosphoribosylglycina 57.2 76 0.0016 23.4 8.9 83 7-127 1-88 (207)
138 PRK07998 gatY putative fructos 57.2 33 0.00071 26.7 5.3 61 94-156 18-79 (283)
139 PRK02929 L-arabinose isomerase 56.9 93 0.002 26.3 8.2 47 104-159 55-105 (499)
140 PRK12569 hypothetical protein; 56.5 87 0.0019 23.8 8.2 99 15-127 42-150 (245)
141 PHA03368 DNA packaging termina 56.3 1.5E+02 0.0032 26.4 9.3 105 4-127 576-695 (738)
142 PF02568 ThiI: Thiamine biosyn 56.2 77 0.0017 23.2 8.4 38 4-47 2-39 (197)
143 TIGR01917 gly_red_sel_B glycin 56.2 41 0.0009 27.7 5.8 65 94-161 44-117 (431)
144 PRK14025 multifunctional 3-iso 55.9 67 0.0015 25.6 6.9 29 16-45 140-172 (330)
145 PRK13399 fructose-1,6-bisphosp 55.5 45 0.00099 26.7 5.9 61 94-156 18-80 (347)
146 PRK08576 hypothetical protein; 55.0 1.2E+02 0.0027 25.2 9.2 33 7-45 236-268 (438)
147 COG0069 GltB Glutamate synthas 54.9 85 0.0019 26.4 7.5 62 95-166 305-367 (485)
148 COG0036 Rpe Pentose-5-phosphat 54.7 59 0.0013 24.3 6.0 63 77-146 95-157 (220)
149 COG1139 Uncharacterized conser 54.6 75 0.0016 26.4 7.0 56 70-127 57-112 (459)
150 COG1058 CinA Predicted nucleot 54.6 96 0.0021 23.8 8.1 75 81-165 24-101 (255)
151 TIGR01425 SRP54_euk signal rec 54.2 1.3E+02 0.0027 25.0 10.1 91 9-133 105-198 (429)
152 TIGR00853 pts-lac PTS system, 54.2 39 0.00084 21.4 4.5 72 79-166 19-90 (95)
153 PF01116 F_bP_aldolase: Fructo 54.0 17 0.00037 28.2 3.3 61 94-156 17-78 (287)
154 COG0816 Predicted endonuclease 54.0 25 0.00054 24.3 3.8 51 105-158 41-95 (141)
155 TIGR03573 WbuX N-acetyl sugar 53.8 1.1E+02 0.0024 24.3 10.2 34 7-45 61-94 (343)
156 cd00946 FBP_aldolase_IIA Class 53.2 49 0.0011 26.5 5.8 63 94-156 16-92 (345)
157 PRK02551 flavoprotein NrdI; Pr 53.0 9.3 0.0002 26.8 1.6 46 106-156 80-128 (154)
158 TIGR01859 fruc_bis_ald_ fructo 53.0 48 0.001 25.7 5.6 62 94-157 16-80 (282)
159 PLN02948 phosphoribosylaminoim 53.0 71 0.0015 27.5 7.1 54 78-133 424-481 (577)
160 PRK00074 guaA GMP synthase; Re 52.8 1.4E+02 0.0031 25.2 9.8 37 5-46 215-251 (511)
161 COG1410 MetH Methionine syntha 52.8 18 0.00039 31.9 3.5 50 104-158 445-494 (842)
162 PRK03692 putative UDP-N-acetyl 52.5 1E+02 0.0022 23.4 8.6 42 106-156 146-187 (243)
163 COG0191 Fba Fructose/tagatose 52.4 48 0.001 25.8 5.4 73 77-156 7-80 (286)
164 COG0788 PurU Formyltetrahydrof 52.3 30 0.00066 26.6 4.2 42 82-125 129-174 (287)
165 cd00532 MGS-like MGS-like doma 52.2 62 0.0014 21.0 5.4 63 89-156 40-104 (112)
166 PRK13011 formyltetrahydrofolat 52.2 1.1E+02 0.0024 23.8 9.2 85 3-127 87-175 (286)
167 TIGR00420 trmU tRNA (5-methyla 52.1 1.2E+02 0.0027 24.3 10.3 33 6-44 1-33 (352)
168 PRK09261 phospho-2-dehydro-3-d 51.8 1.3E+02 0.0027 24.3 9.0 128 5-156 51-185 (349)
169 PRK03437 3-isopropylmalate deh 51.8 73 0.0016 25.5 6.5 29 16-45 160-188 (344)
170 PF05582 Peptidase_U57: YabG p 51.7 70 0.0015 24.9 6.1 45 80-126 118-163 (287)
171 PRK05835 fructose-bisphosphate 51.6 56 0.0012 25.7 5.8 61 94-156 17-79 (307)
172 cd06533 Glyco_transf_WecG_TagA 51.5 46 0.001 23.5 5.0 44 104-156 86-129 (171)
173 PRK05920 aromatic acid decarbo 51.0 40 0.00086 24.8 4.7 36 4-42 2-37 (204)
174 TIGR02855 spore_yabG sporulati 50.4 78 0.0017 24.5 6.2 45 80-126 117-162 (283)
175 COG2876 AroA 3-deoxy-D-arabino 49.9 57 0.0012 25.2 5.4 105 14-156 53-157 (286)
176 TIGR00167 cbbA ketose-bisphosp 49.8 67 0.0015 25.0 6.0 61 94-156 18-82 (288)
177 PRK09875 putative hydrolase; P 49.7 75 0.0016 24.8 6.2 51 77-129 138-190 (292)
178 TIGR01918 various_sel_PB selen 49.3 19 0.00042 29.5 3.0 65 94-161 44-117 (431)
179 PRK07315 fructose-bisphosphate 49.0 60 0.0013 25.3 5.6 61 94-156 18-82 (293)
180 cd01715 ETF_alpha The electron 48.9 90 0.002 21.8 8.7 23 106-128 72-94 (168)
181 COG2185 Sbm Methylmalonyl-CoA 48.6 70 0.0015 22.2 5.3 73 84-164 33-107 (143)
182 PF00180 Iso_dh: Isocitrate/is 48.5 58 0.0013 26.1 5.6 79 16-125 160-239 (348)
183 TIGR02088 LEU3_arch isopropylm 48.4 71 0.0015 25.3 6.0 28 15-44 140-167 (322)
184 cd05564 PTS_IIB_chitobiose_lic 48.3 69 0.0015 20.2 5.3 67 79-161 15-81 (96)
185 PRK09590 celB cellobiose phosp 48.3 74 0.0016 20.6 5.2 64 79-156 17-80 (104)
186 TIGR01521 FruBisAldo_II_B fruc 48.2 69 0.0015 25.7 5.9 61 94-156 16-78 (347)
187 PF07279 DUF1442: Protein of u 47.8 1.2E+02 0.0025 22.7 8.5 26 102-129 102-127 (218)
188 cd01029 TOPRIM_primases TOPRIM 47.8 56 0.0012 19.3 4.4 33 6-40 44-76 (79)
189 PF12683 DUF3798: Protein of u 47.7 66 0.0014 24.8 5.4 92 7-128 4-97 (275)
190 cd01996 Alpha_ANH_like_III Thi 47.6 87 0.0019 21.2 10.0 34 7-45 3-36 (154)
191 PLN02404 6,7-dimethyl-8-ribity 47.6 92 0.002 21.5 7.0 91 74-169 20-124 (141)
192 cd01998 tRNA_Me_trans tRNA met 47.6 1.4E+02 0.0031 23.8 10.5 33 7-45 1-33 (349)
193 TIGR02113 coaC_strep phosphopa 47.3 45 0.00098 23.8 4.4 34 6-42 1-34 (177)
194 cd04724 Tryptophan_synthase_al 46.8 1.2E+02 0.0026 22.7 6.9 75 79-158 117-194 (242)
195 cd01986 Alpha_ANH_like Adenine 46.8 73 0.0016 20.1 8.7 34 8-47 1-34 (103)
196 PRK05234 mgsA methylglyoxal sy 46.7 88 0.0019 21.5 5.6 105 3-156 2-111 (142)
197 TIGR00646 MG010 DNA primase-re 46.4 46 0.001 24.8 4.4 37 5-43 154-190 (218)
198 TIGR02082 metH 5-methyltetrahy 46.3 66 0.0014 30.3 6.2 56 103-163 769-825 (1178)
199 PRK08194 tartrate dehydrogenas 46.2 69 0.0015 25.8 5.6 28 16-45 161-188 (352)
200 PRK12419 riboflavin synthase s 46.2 1E+02 0.0023 21.7 6.9 83 74-159 23-114 (158)
201 cd00950 DHDPS Dihydrodipicolin 46.1 1.2E+02 0.0027 23.1 7.0 79 77-161 56-136 (284)
202 PF13362 Toprim_3: Toprim doma 45.9 56 0.0012 20.3 4.3 38 4-43 40-79 (96)
203 TIGR02852 spore_dpaB dipicolin 45.8 45 0.00097 24.2 4.2 34 6-42 1-35 (187)
204 cd00951 KDGDH 5-dehydro-4-deox 45.7 1.1E+02 0.0024 23.5 6.7 70 78-156 57-130 (289)
205 cd00578 L-fuc_L-ara-isomerases 45.6 1.7E+02 0.0037 24.2 8.1 42 106-156 52-93 (452)
206 COG3867 Arabinogalactan endo-1 45.4 1.2E+02 0.0027 24.0 6.6 81 75-156 197-280 (403)
207 TIGR00177 molyb_syn molybdenum 45.3 83 0.0018 21.4 5.4 38 85-124 34-73 (144)
208 PF07972 Flavodoxin_NdrI: NrdI 44.9 9.5 0.00021 25.6 0.6 47 105-156 57-106 (122)
209 TIGR00262 trpA tryptophan synt 44.9 1.3E+02 0.0028 22.9 6.8 77 80-158 129-205 (256)
210 PRK08610 fructose-bisphosphate 44.8 79 0.0017 24.6 5.6 61 94-156 18-82 (286)
211 PRK09196 fructose-1,6-bisphosp 44.5 79 0.0017 25.4 5.7 61 94-156 18-80 (347)
212 PRK03673 hypothetical protein; 44.5 1.6E+02 0.0036 24.1 7.6 71 84-164 27-100 (396)
213 PRK11106 queuosine biosynthesi 44.4 1.3E+02 0.0029 22.5 10.4 35 6-46 2-36 (231)
214 smart00851 MGS MGS-like domain 44.3 57 0.0012 20.1 4.1 63 87-155 26-89 (90)
215 PF01645 Glu_synthase: Conserv 44.2 96 0.0021 25.1 6.2 48 77-128 191-239 (368)
216 PF09043 Lys-AminoMut_A: D-Lys 44.0 1.9E+02 0.0041 24.1 8.6 40 94-133 147-189 (509)
217 TIGR00114 lumazine-synth 6,7-d 43.9 1E+02 0.0023 21.1 6.7 91 73-168 12-116 (138)
218 COG3623 SgaU Putative L-xylulo 43.8 1.4E+02 0.0031 22.7 7.9 74 18-112 94-167 (287)
219 PRK09197 fructose-bisphosphate 43.7 75 0.0016 25.5 5.4 74 76-156 9-97 (350)
220 TIGR00884 guaA_Cterm GMP synth 43.4 1.6E+02 0.0035 23.1 11.4 36 6-46 17-52 (311)
221 PRK08745 ribulose-phosphate 3- 43.2 1E+02 0.0022 23.0 5.9 46 80-129 99-144 (223)
222 TIGR02766 crypt_chrom_pln cryp 42.9 2E+02 0.0043 24.0 11.3 75 36-127 23-97 (475)
223 PHA02031 putative DnaG-like pr 42.6 42 0.00091 25.8 3.8 37 5-43 206-242 (266)
224 PF01207 Dus: Dihydrouridine s 42.3 1.2E+02 0.0026 23.8 6.4 123 20-162 66-195 (309)
225 PF02142 MGS: MGS-like domain 42.0 25 0.00054 22.1 2.2 65 85-155 24-94 (95)
226 PF03575 Peptidase_S51: Peptid 41.9 48 0.001 22.8 3.8 44 80-127 2-45 (154)
227 COG0151 PurD Phosphoribosylami 41.8 27 0.00059 28.7 2.8 24 104-127 50-73 (428)
228 PRK03170 dihydrodipicolinate s 41.4 1.6E+02 0.0035 22.6 7.1 76 77-160 57-136 (292)
229 PLN00123 isocitrate dehydrogen 41.4 1.6E+02 0.0034 23.9 6.9 31 15-46 167-197 (360)
230 cd06361 PBP1_GPC6A_like Ligand 41.3 1.9E+02 0.0042 23.4 11.2 25 104-128 245-269 (403)
231 TIGR00674 dapA dihydrodipicoli 41.2 1.6E+02 0.0035 22.5 7.2 77 77-161 54-134 (285)
232 cd00453 FTBP_aldolase_II Fruct 41.2 1E+02 0.0022 24.7 5.8 62 94-156 13-90 (340)
233 PRK11914 diacylglycerol kinase 40.6 1.3E+02 0.0028 23.3 6.4 40 83-124 31-71 (306)
234 COG1111 MPH1 ERCC4-like helica 40.4 72 0.0016 27.0 5.0 90 75-166 349-440 (542)
235 cd01422 MGS Methylglyoxal synt 40.4 1.1E+02 0.0023 20.1 5.7 59 90-156 44-106 (115)
236 PRK12755 phospho-2-dehydro-3-d 39.9 2E+02 0.0043 23.2 10.4 130 5-156 52-186 (353)
237 PRK13111 trpA tryptophan synth 39.7 1.7E+02 0.0036 22.4 6.7 74 82-158 133-207 (258)
238 PRK10653 D-ribose transporter 39.7 1.6E+02 0.0036 22.2 7.8 49 77-127 42-92 (295)
239 PRK08005 epimerase; Validated 39.4 1.3E+02 0.0029 22.2 5.9 46 80-129 95-140 (210)
240 TIGR02313 HpaI-NOT-DapA 2,4-di 39.3 1.7E+02 0.0038 22.6 6.9 75 78-158 57-134 (294)
241 KOG3111 D-ribulose-5-phosphate 39.2 1.3E+02 0.0029 22.2 5.6 49 80-132 101-149 (224)
242 CHL00200 trpA tryptophan synth 39.1 1.6E+02 0.0034 22.6 6.5 76 80-157 133-208 (263)
243 PRK08091 ribulose-phosphate 3- 39.1 1.7E+02 0.0036 22.0 10.5 44 80-126 166-209 (228)
244 cd06334 PBP1_ABC_ligand_bindin 38.9 1.9E+02 0.0042 22.7 9.4 20 105-124 207-226 (351)
245 smart00852 MoCF_biosynth Proba 38.8 1.2E+02 0.0026 20.2 5.6 39 84-124 24-64 (135)
246 PF01596 Methyltransf_3: O-met 38.7 50 0.0011 24.2 3.6 48 80-129 83-133 (205)
247 PRK09490 metH B12-dependent me 38.7 99 0.0021 29.4 6.1 54 103-161 788-842 (1229)
248 TIGR02089 TTC tartrate dehydro 38.6 1.2E+02 0.0027 24.3 6.0 28 16-45 164-191 (352)
249 cd01424 MGS_CPS_II Methylglyox 38.6 1.1E+02 0.0023 19.6 6.0 60 89-156 41-100 (110)
250 PRK04147 N-acetylneuraminate l 38.4 1.8E+02 0.0039 22.4 6.9 75 78-160 61-139 (293)
251 TIGR03249 KdgD 5-dehydro-4-deo 38.3 1.7E+02 0.0037 22.6 6.7 71 77-156 61-135 (296)
252 PLN02476 O-methyltransferase 38.3 1.1E+02 0.0024 23.7 5.6 49 78-128 154-205 (278)
253 PRK03670 competence damage-ind 38.3 1.8E+02 0.0039 22.2 7.3 69 83-160 25-96 (252)
254 PRK07709 fructose-bisphosphate 38.2 1.3E+02 0.0028 23.4 6.0 61 94-156 18-82 (285)
255 cd00885 cinA Competence-damage 38.2 1.4E+02 0.0031 21.0 7.7 39 84-124 25-65 (170)
256 cd01539 PBP1_GGBP Periplasmic 37.7 1.8E+02 0.004 22.1 7.6 47 78-126 16-66 (303)
257 PRK12858 tagatose 1,6-diphosph 37.7 2.1E+02 0.0046 22.9 8.8 114 20-156 106-246 (340)
258 COG1646 Predicted phosphate-bi 37.6 68 0.0015 24.2 4.1 48 104-156 28-75 (240)
259 KOG0237 Glycinamide ribonucleo 37.3 60 0.0013 28.1 4.2 50 105-164 56-105 (788)
260 TIGR00290 MJ0570_dom MJ0570-re 37.2 1.8E+02 0.0038 21.8 12.1 94 7-130 2-98 (223)
261 cd01997 GMP_synthase_C The C-t 37.2 2E+02 0.0044 22.4 10.0 35 7-46 1-35 (295)
262 PF14639 YqgF: Holliday-juncti 37.2 44 0.00096 23.2 3.0 22 106-127 52-73 (150)
263 PRK10550 tRNA-dihydrouridine s 37.0 2.1E+02 0.0045 22.5 10.2 75 76-159 119-203 (312)
264 smart00493 TOPRIM topoisomeras 36.4 64 0.0014 18.8 3.3 26 6-31 48-73 (76)
265 PF13155 Toprim_2: Toprim-like 36.4 1E+02 0.0022 18.9 4.5 29 4-32 46-74 (96)
266 PRK08745 ribulose-phosphate 3- 36.1 1.8E+02 0.004 21.7 10.2 44 80-126 158-201 (223)
267 PRK04539 ppnK inorganic polyph 36.1 83 0.0018 24.6 4.6 39 1-41 1-40 (296)
268 TIGR00486 YbgI_SA1388 dinuclea 36.1 77 0.0017 23.9 4.4 33 1-42 32-64 (249)
269 cd06318 PBP1_ABC_sugar_binding 36.0 1.8E+02 0.0039 21.5 8.0 49 77-127 15-65 (282)
270 PRK07178 pyruvate carboxylase 35.7 1.6E+02 0.0034 24.6 6.5 34 5-45 2-35 (472)
271 cd01537 PBP1_Repressors_Sugar_ 35.5 1.7E+02 0.0036 21.1 8.3 67 78-156 16-84 (264)
272 PLN02858 fructose-bisphosphate 35.3 1.2E+02 0.0026 29.2 6.2 67 85-156 1107-1174(1378)
273 cd08170 GlyDH Glycerol dehydro 35.2 2E+02 0.0043 22.8 6.8 43 79-123 37-83 (351)
274 cd08550 GlyDH-like Glycerol_de 35.1 1.8E+02 0.004 23.0 6.6 43 80-124 38-85 (349)
275 cd00408 DHDPS-like Dihydrodipi 34.7 2E+02 0.0044 21.8 7.4 78 76-159 52-131 (281)
276 TIGR01304 IMP_DH_rel_2 IMP deh 34.7 2.5E+02 0.0054 22.8 7.6 49 104-158 142-195 (369)
277 cd05569 PTS_IIB_fructose PTS_I 34.7 98 0.0021 19.5 4.1 49 81-133 19-69 (96)
278 PRK09722 allulose-6-phosphate 34.5 2E+02 0.0043 21.6 10.9 45 79-126 155-199 (229)
279 PRK00919 GMP synthase subunit 34.5 2.3E+02 0.005 22.3 10.7 37 6-47 22-58 (307)
280 COG1540 Uncharacterized protei 34.5 2.1E+02 0.0045 21.8 8.3 101 14-128 38-148 (252)
281 COG1780 NrdI Protein involved 34.5 33 0.00071 23.6 1.9 48 104-156 58-108 (141)
282 PRK08392 hypothetical protein; 34.4 1.8E+02 0.004 21.2 6.8 66 79-153 138-205 (215)
283 COG0329 DapA Dihydrodipicolina 34.3 2.2E+02 0.0049 22.1 8.8 72 77-156 60-135 (299)
284 COG3969 Predicted phosphoadeno 33.9 67 0.0015 25.8 3.7 42 4-46 26-67 (407)
285 PRK09426 methylmalonyl-CoA mut 33.8 1.9E+02 0.0042 25.7 6.9 51 104-159 620-672 (714)
286 cd00958 DhnA Class I fructose- 33.7 1.9E+02 0.0042 21.2 7.8 71 75-158 106-187 (235)
287 PF02971 FTCD: Formiminotransf 33.7 1.6E+02 0.0036 20.4 5.3 38 75-114 65-103 (145)
288 cd02068 radical_SAM_B12_BD B12 33.6 1.4E+02 0.003 19.6 6.0 22 104-125 25-47 (127)
289 KOG2310 DNA repair exonuclease 33.5 39 0.00084 28.8 2.5 22 104-125 39-60 (646)
290 TIGR01520 FruBisAldo_II_A fruc 33.3 1.7E+02 0.0037 23.7 5.9 63 94-156 27-104 (357)
291 PRK08883 ribulose-phosphate 3- 33.2 2E+02 0.0044 21.3 10.1 45 79-126 153-197 (220)
292 cd07186 CofD_like LPPG:FO 2-ph 33.2 1.3E+02 0.0029 23.7 5.3 48 104-156 172-220 (303)
293 PRK03620 5-dehydro-4-deoxygluc 33.1 2.2E+02 0.0048 22.1 6.6 71 77-156 63-137 (303)
294 KOG1467 Translation initiation 32.9 3.1E+02 0.0067 23.3 8.9 106 6-156 360-466 (556)
295 PRK09722 allulose-6-phosphate 32.8 1.8E+02 0.0039 21.8 5.8 43 80-126 97-139 (229)
296 PRK07084 fructose-bisphosphate 32.8 1.4E+02 0.003 23.7 5.4 62 94-156 24-90 (321)
297 TIGR00683 nanA N-acetylneurami 32.6 2.3E+02 0.0051 21.8 7.2 73 78-158 58-135 (290)
298 PRK00994 F420-dependent methyl 32.6 1.7E+02 0.0037 22.3 5.5 43 107-156 50-92 (277)
299 COG0391 Uncharacterized conser 32.5 73 0.0016 25.3 3.8 49 104-157 178-227 (323)
300 PLN02781 Probable caffeoyl-CoA 32.4 1.7E+02 0.0036 21.8 5.7 48 78-127 104-154 (234)
301 cd07044 CofD_YvcK Family of Co 32.3 69 0.0015 25.2 3.7 50 104-158 163-213 (309)
302 COG2102 Predicted ATPases of P 32.2 2.2E+02 0.0047 21.4 10.3 92 7-128 2-97 (223)
303 PF00290 Trp_syntA: Tryptophan 32.1 2E+02 0.0044 22.0 6.1 15 143-157 190-204 (259)
304 PF00793 DAHP_synth_1: DAHP sy 32.1 1.7E+02 0.0037 22.5 5.7 60 80-156 77-136 (270)
305 PF02670 DXP_reductoisom: 1-de 32.0 70 0.0015 21.7 3.2 35 98-134 73-107 (129)
306 cd00954 NAL N-Acetylneuraminic 31.9 2.4E+02 0.0051 21.7 7.3 72 78-157 58-134 (288)
307 PRK08091 ribulose-phosphate 3- 31.7 2.2E+02 0.0047 21.4 6.0 44 80-127 105-150 (228)
308 COG0420 SbcD DNA repair exonuc 31.7 82 0.0018 25.4 4.1 27 75-105 24-50 (390)
309 PRK04527 argininosuccinate syn 31.4 3E+02 0.0065 22.7 11.5 35 6-46 3-37 (400)
310 PF03358 FMN_red: NADPH-depend 31.3 1.7E+02 0.0036 19.7 5.2 48 77-128 17-81 (152)
311 TIGR02634 xylF D-xylose ABC tr 31.3 2.4E+02 0.0052 21.5 8.0 49 77-127 14-64 (302)
312 COG0159 TrpA Tryptophan syntha 31.2 2.5E+02 0.0053 21.7 6.3 47 78-128 109-158 (265)
313 TIGR00421 ubiX_pad polyprenyl 31.2 88 0.0019 22.4 3.8 34 7-43 1-34 (181)
314 TIGR02069 cyanophycinase cyano 31.0 2.4E+02 0.0051 21.4 8.3 93 18-147 13-109 (250)
315 PRK00881 purH bifunctional pho 31.0 2.7E+02 0.0058 23.8 7.0 44 82-127 467-510 (513)
316 TIGR01769 GGGP geranylgeranylg 31.0 54 0.0012 24.1 2.7 44 108-156 15-58 (205)
317 PRK06850 hypothetical protein; 30.9 3.4E+02 0.0073 23.2 8.2 21 8-28 37-57 (507)
318 COG1831 Predicted metal-depend 30.8 2.6E+02 0.0056 21.8 8.6 49 74-124 141-193 (285)
319 PLN02589 caffeoyl-CoA O-methyl 30.7 1.6E+02 0.0036 22.3 5.4 49 79-129 116-168 (247)
320 PF04244 DPRP: Deoxyribodipyri 30.6 2.3E+02 0.0049 21.2 6.0 57 75-133 46-107 (224)
321 COG0054 RibH Riboflavin syntha 30.6 1.9E+02 0.0042 20.3 7.1 89 74-167 25-127 (152)
322 cd02801 DUS_like_FMN Dihydrour 30.4 2.2E+02 0.0047 20.8 8.4 50 105-157 139-189 (231)
323 PF02878 PGM_PMM_I: Phosphoglu 30.4 67 0.0015 21.6 3.0 40 4-45 39-78 (137)
324 COG3340 PepE Peptidase E [Amin 30.3 2.4E+02 0.0051 21.2 9.8 44 79-126 50-93 (224)
325 cd00886 MogA_MoaB MogA_MoaB fa 30.3 1.8E+02 0.004 19.9 5.3 38 85-124 27-68 (152)
326 PF12965 DUF3854: Domain of un 30.2 1.6E+02 0.0035 19.9 4.8 40 3-44 66-111 (130)
327 TIGR00034 aroFGH phospho-2-deh 30.2 2.9E+02 0.0063 22.2 9.0 131 4-156 45-180 (344)
328 cd04795 SIS SIS domain. SIS (S 30.0 83 0.0018 18.7 3.2 36 4-42 46-81 (87)
329 PLN02591 tryptophan synthase 29.9 2.5E+02 0.0054 21.4 6.9 14 144-157 182-195 (250)
330 PRK00211 sulfur relay protein 29.9 1.5E+02 0.0032 19.6 4.5 38 5-45 1-42 (119)
331 PF01380 SIS: SIS domain SIS d 29.7 75 0.0016 20.6 3.1 40 4-46 52-91 (131)
332 cd00758 MoCF_BD MoCF_BD: molyb 29.7 1.7E+02 0.0038 19.4 5.5 37 86-124 27-65 (133)
333 PRK15411 rcsA colanic acid cap 29.6 2.2E+02 0.0048 20.6 7.2 21 104-124 34-54 (207)
334 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.5 86 0.0019 20.3 3.4 41 4-47 45-85 (126)
335 COG4122 Predicted O-methyltran 29.3 1.8E+02 0.0039 21.7 5.2 47 78-127 95-142 (219)
336 COG1197 Mfd Transcription-repa 29.3 3.5E+02 0.0077 25.6 7.8 50 75-127 655-706 (1139)
337 cd01536 PBP1_ABC_sugar_binding 29.3 2.2E+02 0.0048 20.6 8.0 49 77-127 15-65 (267)
338 PRK13608 diacylglycerol glucos 29.1 3E+02 0.0066 22.0 7.7 42 1-44 1-46 (391)
339 PRK14057 epimerase; Provisiona 28.9 2.7E+02 0.0058 21.4 10.9 45 79-126 179-223 (254)
340 TIGR02667 moaB_proteo molybden 28.9 2.1E+02 0.0045 20.1 5.4 37 86-124 30-70 (163)
341 PRK10415 tRNA-dihydrouridine s 28.8 2.9E+02 0.0063 21.7 8.6 63 94-159 134-203 (321)
342 PRK12756 phospho-2-dehydro-3-d 28.3 2.5E+02 0.0053 22.7 6.0 126 4-156 49-184 (348)
343 PF03162 Y_phosphatase2: Tyros 28.2 97 0.0021 21.8 3.5 65 94-158 33-98 (164)
344 PF00994 MoCF_biosynth: Probab 28.1 1.9E+02 0.0042 19.4 5.6 39 83-123 22-62 (144)
345 PRK14561 hypothetical protein; 28.1 2.3E+02 0.005 20.4 9.3 31 7-44 2-32 (194)
346 TIGR00364 exsB protein. This p 27.9 2.3E+02 0.005 20.3 10.1 32 8-45 1-32 (201)
347 PF05902 4_1_CTD: 4.1 protein 27.7 1.6E+02 0.0035 19.5 4.2 39 6-44 71-109 (114)
348 cd00952 CHBPH_aldolase Trans-o 27.6 3E+02 0.0065 21.5 7.3 76 77-160 64-144 (309)
349 PRK08883 ribulose-phosphate 3- 27.4 2.5E+02 0.0055 20.8 5.8 42 80-125 95-136 (220)
350 PRK06806 fructose-bisphosphate 27.4 2.9E+02 0.0064 21.4 7.6 49 106-157 155-207 (281)
351 PRK11889 flhF flagellar biosyn 27.4 3.7E+02 0.0079 22.4 8.4 45 85-131 290-334 (436)
352 cd06282 PBP1_GntR_like_2 Ligan 27.3 2.5E+02 0.0053 20.4 8.4 45 79-125 17-63 (266)
353 PRK00766 hypothetical protein; 27.2 59 0.0013 23.7 2.4 69 94-169 43-118 (194)
354 cd06320 PBP1_allose_binding Pe 27.2 2.6E+02 0.0056 20.6 6.8 48 77-126 15-66 (275)
355 cd06322 PBP1_ABC_sugar_binding 27.1 2.5E+02 0.0055 20.5 7.8 48 77-126 15-64 (267)
356 TIGR02329 propionate_PrpR prop 27.0 3.6E+02 0.0078 23.0 7.2 61 79-156 15-78 (526)
357 PRK13337 putative lipid kinase 26.9 3E+02 0.0065 21.3 6.9 50 81-133 22-72 (304)
358 TIGR00542 hxl6Piso_put hexulos 26.8 2.8E+02 0.0061 20.9 7.9 80 19-119 93-175 (279)
359 PRK13055 putative lipid kinase 26.8 3.2E+02 0.0069 21.5 7.9 52 79-133 21-74 (334)
360 PLN02496 probable phosphopanto 26.7 1.8E+02 0.004 21.5 4.9 36 4-43 18-53 (209)
361 PF11965 DUF3479: Domain of un 26.7 2.4E+02 0.0052 20.0 8.6 37 7-43 2-38 (164)
362 PRK15424 propionate catabolism 26.5 2.8E+02 0.0061 23.8 6.5 62 78-156 24-88 (538)
363 TIGR01826 CofD_related conserv 26.5 1.1E+02 0.0023 24.2 3.8 49 104-157 161-210 (310)
364 TIGR00521 coaBC_dfp phosphopan 26.5 1.5E+02 0.0032 24.3 4.7 35 5-42 3-37 (390)
365 PRK10886 DnaA initiator-associ 26.5 96 0.0021 22.6 3.4 43 4-49 108-150 (196)
366 PRK09423 gldA glycerol dehydro 26.4 3.4E+02 0.0073 21.7 6.8 42 79-122 44-89 (366)
367 PRK06395 phosphoribosylamine-- 26.4 1.2E+02 0.0027 25.0 4.3 21 106-126 54-74 (435)
368 PRK15408 autoinducer 2-binding 26.3 3.2E+02 0.007 21.5 6.6 47 79-127 41-90 (336)
369 KOG0784 Isocitrate dehydrogena 26.3 61 0.0013 25.9 2.4 30 17-47 185-214 (375)
370 cd06313 PBP1_ABC_sugar_binding 26.2 2.8E+02 0.006 20.6 7.6 47 78-126 16-64 (272)
371 TIGR03234 OH-pyruv-isom hydrox 25.7 2.8E+02 0.0061 20.5 8.6 80 19-119 83-170 (254)
372 cd06323 PBP1_ribose_binding Pe 25.6 2.7E+02 0.0058 20.3 7.2 46 78-125 16-63 (268)
373 PF01902 ATP_bind_4: ATP-bindi 25.6 2.8E+02 0.0062 20.6 9.5 95 7-131 2-99 (218)
374 PRK05647 purN phosphoribosylgl 25.6 2.7E+02 0.0058 20.3 9.2 84 5-126 1-89 (200)
375 PF09623 Cas_NE0113: CRISPR-as 25.5 2.1E+02 0.0046 21.4 5.1 39 5-45 1-40 (224)
376 cd07187 YvcK_like family of mo 25.5 1.2E+02 0.0026 23.9 3.9 48 104-156 164-212 (308)
377 TIGR03183 DNA_S_dndC putative 25.4 4E+02 0.0088 22.3 8.8 22 7-28 15-36 (447)
378 PRK12475 thiamine/molybdopteri 25.4 3E+02 0.0065 21.9 6.2 55 93-159 95-149 (338)
379 PRK00509 argininosuccinate syn 25.1 3.9E+02 0.0084 22.0 12.3 37 5-46 2-38 (399)
380 PRK13606 LPPG:FO 2-phospho-L-l 25.0 1.4E+02 0.003 23.5 4.2 45 104-155 174-219 (303)
381 cd00019 AP2Ec AP endonuclease 24.9 3.1E+02 0.0066 20.7 7.4 78 18-117 83-166 (279)
382 COG0284 PyrF Orotidine-5'-phos 24.9 3.1E+02 0.0067 20.7 7.4 38 3-47 9-46 (240)
383 PF14097 SpoVAE: Stage V sporu 24.8 91 0.002 22.4 2.8 22 7-28 1-22 (180)
384 TIGR01755 flav_wrbA NAD(P)H:qu 24.8 2.7E+02 0.0059 20.0 5.9 13 116-128 67-79 (197)
385 PRK11815 tRNA-dihydrouridine s 24.4 3.6E+02 0.0078 21.3 8.8 92 19-125 76-172 (333)
386 KOG3243 6,7-dimethyl-8-ribityl 24.3 2.4E+02 0.0052 19.3 7.0 87 79-168 35-133 (158)
387 PRK13790 phosphoribosylamine-- 24.0 2.1E+02 0.0046 23.0 5.2 24 104-127 14-37 (379)
388 PRK03767 NAD(P)H:quinone oxido 24.0 2.8E+02 0.0061 19.9 6.0 14 116-129 68-81 (200)
389 COG1504 Uncharacterized conser 23.9 1.2E+02 0.0025 20.2 3.0 45 115-165 59-103 (121)
390 COG1433 Uncharacterized conser 23.9 96 0.0021 20.8 2.7 26 107-132 55-80 (121)
391 COG1759 5-formaminoimidazole-4 23.8 3.1E+02 0.0067 22.0 5.7 46 86-132 10-55 (361)
392 COG3360 Uncharacterized conser 23.7 1.7E+02 0.0038 17.5 3.7 42 4-47 5-46 (71)
393 cd05403 NT_KNTase_like Nucleot 23.6 64 0.0014 19.4 1.8 36 95-132 17-52 (93)
394 cd01423 MGS_CPS_I_III Methylgl 23.6 2.1E+02 0.0046 18.4 4.4 44 107-155 61-105 (116)
395 COG2201 CheB Chemotaxis respon 23.6 4E+02 0.0086 21.5 7.7 49 104-161 34-84 (350)
396 cd06301 PBP1_rhizopine_binding 23.6 3E+02 0.0065 20.1 7.9 68 78-156 16-86 (272)
397 TIGR02151 IPP_isom_2 isopenten 23.5 3.5E+02 0.0076 21.4 6.3 47 79-127 167-213 (333)
398 PRK05437 isopentenyl pyrophosp 23.3 3.1E+02 0.0067 22.0 6.0 49 78-128 173-221 (352)
399 PRK08349 hypothetical protein; 23.3 2.9E+02 0.0062 19.8 11.4 34 6-45 1-34 (198)
400 PF15647 Tox-REase-3: Restrict 23.2 2.2E+02 0.0048 18.5 6.1 47 73-122 59-105 (109)
401 cd05017 SIS_PGI_PMI_1 The memb 23.2 1.3E+02 0.0029 19.4 3.4 36 4-42 42-77 (119)
402 PF04007 DUF354: Protein of un 23.2 3.9E+02 0.0085 21.3 6.8 50 79-133 15-64 (335)
403 PLN02880 tyrosine decarboxylas 23.1 4.6E+02 0.0099 22.1 7.5 26 104-129 256-281 (490)
404 cd06315 PBP1_ABC_sugar_binding 23.0 3.2E+02 0.007 20.3 7.5 47 77-125 16-64 (280)
405 PRK07106 5-aminoimidazole-4-ca 23.0 1.1E+02 0.0024 24.9 3.3 40 86-127 348-387 (390)
406 PF01933 UPF0052: Uncharacteri 22.9 84 0.0018 24.6 2.6 49 104-157 172-221 (300)
407 PF01784 NIF3: NIF3 (NGG1p int 22.8 1.1E+02 0.0023 23.0 3.1 30 94-123 30-59 (241)
408 PRK10799 metal-binding protein 22.8 1.2E+02 0.0027 22.8 3.5 28 96-123 35-62 (247)
409 PHA03372 DNA packaging termina 22.8 5.4E+02 0.012 22.8 9.3 100 4-124 522-630 (668)
410 COG0159 TrpA Tryptophan syntha 22.6 3.4E+02 0.0073 21.0 5.7 74 82-157 138-211 (265)
411 PLN02285 methionyl-tRNA formyl 22.6 4E+02 0.0086 21.2 6.8 22 107-128 83-104 (334)
412 PRK11921 metallo-beta-lactamas 22.5 4.2E+02 0.0091 21.4 10.1 33 94-128 279-311 (394)
413 COG0042 tRNA-dihydrouridine sy 22.4 4E+02 0.0086 21.1 9.1 125 8-156 69-203 (323)
414 COG0141 HisD Histidinol dehydr 22.4 4.6E+02 0.0099 21.8 9.6 42 1-43 225-266 (425)
415 KOG3180 Electron transfer flav 22.3 3.3E+02 0.0072 20.2 6.8 24 104-127 101-124 (254)
416 PRK08227 autoinducer 2 aldolas 22.1 3.7E+02 0.0081 20.7 7.3 64 78-156 127-197 (264)
417 COG1162 Predicted GTPases [Gen 22.0 4E+02 0.0087 21.0 10.2 90 9-129 86-176 (301)
418 COG0426 FpaA Uncharacterized f 21.9 3.3E+02 0.0072 22.3 5.8 46 79-128 263-308 (388)
419 TIGR00147 lipid kinase, YegS/R 21.8 3.7E+02 0.0079 20.5 8.1 52 79-133 20-72 (293)
420 cd01538 PBP1_ABC_xylose_bindin 21.7 3.5E+02 0.0076 20.2 8.1 48 77-126 15-64 (288)
421 cd06309 PBP1_YtfQ_like Peripla 21.6 3.4E+02 0.0073 20.0 7.9 49 77-127 15-65 (273)
422 PLN02329 3-isopropylmalate deh 21.5 1E+02 0.0022 25.4 2.9 28 16-45 211-238 (409)
423 PF03054 tRNA_Me_trans: tRNA m 21.4 4.4E+02 0.0096 21.3 7.6 94 6-125 1-124 (356)
424 PRK05265 pyridoxine 5'-phospha 21.4 3.4E+02 0.0074 20.6 5.4 44 77-125 112-155 (239)
425 PRK13789 phosphoribosylamine-- 21.3 1.6E+02 0.0035 24.2 4.1 25 1-28 1-25 (426)
426 PRK09271 flavodoxin; Provision 21.3 1.9E+02 0.0041 20.0 4.0 10 117-126 51-60 (160)
427 cd03145 GAT1_cyanophycinase Ty 21.2 3.4E+02 0.0074 19.9 9.6 95 17-148 13-111 (217)
428 PRK03600 nrdI ribonucleotide r 21.2 1.3E+02 0.0029 20.4 3.0 49 103-156 56-107 (134)
429 COG0473 LeuB Isocitrate/isopro 21.2 96 0.0021 24.9 2.6 32 15-47 155-186 (348)
430 TIGR00512 salvage_mtnA S-methy 21.1 3.7E+02 0.0079 21.5 5.9 61 88-156 203-264 (331)
431 PTZ00170 D-ribulose-5-phosphat 20.8 3.3E+02 0.0071 20.2 5.4 27 100-126 177-203 (228)
432 COG1440 CelA Phosphotransferas 20.8 2.5E+02 0.0055 18.2 5.1 58 83-156 21-78 (102)
433 TIGR00737 nifR3_yhdG putative 20.5 4.2E+02 0.0091 20.7 9.1 60 94-156 132-197 (319)
434 PF00834 Ribul_P_3_epim: Ribul 20.4 1.8E+02 0.004 21.2 3.9 45 80-128 94-138 (201)
435 PF01791 DeoC: DeoC/LacD famil 20.2 3.7E+02 0.008 19.9 6.9 78 73-156 107-198 (236)
436 PF01884 PcrB: PcrB family; I 20.2 1.4E+02 0.0029 22.6 3.1 47 104-158 19-66 (230)
437 cd08183 Fe-ADH2 Iron-containin 20.2 3.2E+02 0.0069 21.9 5.5 42 80-123 36-81 (374)
438 COG2121 Uncharacterized protei 20.2 3.8E+02 0.0081 20.0 6.0 36 116-156 116-151 (214)
439 PF00215 OMPdecase: Orotidine 20.2 3.6E+02 0.0078 19.8 6.2 44 79-124 43-92 (226)
440 PRK02628 nadE NAD synthetase; 20.2 6.1E+02 0.013 22.4 8.2 40 4-43 360-400 (679)
441 COG0794 GutQ Predicted sugar p 20.1 2E+02 0.0043 21.2 3.9 42 4-48 85-126 (202)
442 PRK06849 hypothetical protein; 20.1 3.5E+02 0.0076 21.7 5.8 36 1-43 1-36 (389)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.94 E-value=6.1e-26 Score=157.44 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=107.1
Q ss_pred CcEEEEEecCCh--HHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESE--ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 5 ~~~ILv~vd~s~--~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
|+|||||+|+|+ .+.+|+++|..+|+. . ++++++||+++....... .... ......+...+..++.++.
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSASLSLH-----RFAA-DVRRFEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCccccccc-----cccc-chhhHHHHHHHHHHHHHHH
Confidence 799999999994 899999999999986 5 689999999765321110 0001 1122333444555666666
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+...+ .++++++..|+|.+.|+++++++++||||||++|++ +.+ .++||++.+++++++||||+.
T Consensus 73 ~~~~~~~~~--~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~---~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 73 MVSHFTIDP--SRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-IST---HLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHHhCCCC--cceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccc---eecCccHHHHHHcCCCCEEEe
Confidence 666554445 788999999999999999999999999999999976 666 679999999999999999974
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.94 E-value=2.8e-25 Score=154.19 Aligned_cols=140 Identities=22% Similarity=0.255 Sum_probs=104.9
Q ss_pred CcEEEEEecCChH--HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 5 ~~~ILv~vd~s~~--s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
|++||+|+|+|+. +.+|++||..+|+..+ ++++++||+++.+.....+.. ...+. .. .+...+..++.++.
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~--~~l~ll~v~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~~~~~l~~ 74 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDD--AEVHFLTVIPSLPYYASLGLA---YSAEL-PA-MDDLKAEAKSQLEE 74 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccC--CeEEEEEEEccCccccccccc---ccccc-hH-HHHHHHHHHHHHHH
Confidence 6999999999998 5799999999999988 999999999865432211100 00110 00 11223334445555
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+...+ ++++.++..|+|.+.|+++++++++||||||+++ +++.+ .++||++.+++++++||||+.
T Consensus 75 ~~~~~~~~~--~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~---~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 75 IIKKFKLPT--DRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITT---YLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHhCCCC--CceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchh---eeecchHHHHHHhCCCCEEEe
Confidence 555544444 7789999999999999999999999999999985 56777 679999999999999999974
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.93 E-value=5.5e-25 Score=153.10 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=113.2
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+||||+|+|+.+.+|++||+++|+..+ ++++++||.++........ ...+..........+..++.++.+.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~--~~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKG--QTIVLVHVHPPITSIPSSS-----GKLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCC--CcEEEEEeccCcccCCCCc-----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999988 9999999987643321111 011222334444556677888888888
Q ss_pred HHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhccc-chHHHHhcCCC--CCeehh
Q 030672 87 YRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILA-ALSFQFLPNSQ--PSRLFG 157 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~g-s~~~~ll~~~~--~pvL~~ 157 (173)
+...+ +.++..+..| ++.+.|+++++++++|+||||++|++++.+ .++| |++.+++++++ ||||+.
T Consensus 74 ~~~~~--~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~---~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 74 CSRKG--VQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSM---KFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred HhhcC--CeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceee---cccCCchhHHHHhcCCCCceEEEE
Confidence 87777 8899999887 999999999999999999999999999988 5677 69999999999 999973
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.93 E-value=8.1e-25 Score=151.91 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=104.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
|++||||+|+|+.|..|+++|..+|+..+ ++++++||.++.+.... + ..... .....+...+..++.++...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~--a~l~llhV~~~~~~~~~-~---~~~~~--~~~~~~~~~~~~~~~l~~~~ 74 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHND--AHLTLIHIDDGLSELYP-G---IYFPA--TEDILQLLKNKSDNKLYKLT 74 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhC--CeEEEEEEccCcchhch-h---hhccc--hHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999988 99999999876532211 0 00111 11222333444555566555
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHH
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLI 160 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~ 160 (173)
+.+. . ..++..+..|+|.+.|+++|++.++||||||++ ++++.+ ++ | ++.+++++++||||+.+++
T Consensus 75 ~~~~--~--~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~---~~-~-va~~V~~~s~~pVLvv~~~ 140 (142)
T PRK09982 75 KNIQ--W--PKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINR---LM-P-AYRGMINKMSADLLIVPFI 140 (142)
T ss_pred HhcC--C--CcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHH---HH-H-HHHHHHhcCCCCEEEecCC
Confidence 5443 2 457788888999999999999999999999986 788887 33 5 9999999999999986543
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.91 E-value=1.5e-23 Score=145.62 Aligned_cols=137 Identities=19% Similarity=0.232 Sum_probs=96.7
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.|++||||+|+|+.+..|+++|..+|+..+ ++++++||..+..... .+ .. ........+...+. ..+.+
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-~~----~~-~~~~~~~~~~~~~~---~~~~l 70 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDLY-TG----LI-DVNLGDMQKRISEE---THHAL 70 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhhh-hh----hh-hcchHHHHHHHHHH---HHHHH
Confidence 489999999999999999999999999888 9999999943321110 00 00 00011111112222 22333
Q ss_pred HHHHHhcCCceEE-EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 84 EAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 84 ~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
.+.....| ++. ...+..|+|.++|+++|+++++||||||+++ +.+.. +||++.+++++++||||+.+.
T Consensus 71 ~~~~~~~~--~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~-----lgSva~~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 71 TELSTNAG--YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFWSK-----LMSSARQLINTVHVDMLIVPL 139 (144)
T ss_pred HHHHHhCC--CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHHHH-----HHHHHHHHHhhCCCCEEEecC
Confidence 33444556 654 3455689999999999999999999999996 44443 679999999999999999653
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.90 E-value=1.2e-22 Score=140.75 Aligned_cols=137 Identities=16% Similarity=0.269 Sum_probs=103.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.|++|||++|+|+.+..++++|..+|+.++ ++++++|+++..+.+.. ......+.+.+...+..++.++.
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~- 71 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVN--GKISLITLASDPEMYNQ-------FAAPMLEDLRSVMQEETQSFLDK- 71 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhC--CEEEEEEEccCcccchh-------hhHHHHHHHHHHHHHHHHHHHHH-
Confidence 389999999999999999999999999998 99999999876432211 11112223333333333334333
Q ss_pred HHHHHhcCCceEE-EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 84 EAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 84 ~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
.....+ ++. ..++..|++.+.|++++++.++||||||+++++++.+ ++|++.+++++++||||+.++
T Consensus 72 --~~~~~~--~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~-----~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 72 --LIQDAD--YPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSR-----ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred --HHHhcC--CCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH-----HHHHHHHHHhcCCCCEEEEeC
Confidence 334455 554 4566789999999999999999999999999998887 348999999999999998653
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.90 E-value=1.1e-22 Score=138.77 Aligned_cols=138 Identities=30% Similarity=0.349 Sum_probs=103.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
++|||||+|+++.+..+++||..+|+..+ ++|+++||.+....... ........................
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~--~~i~~l~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSG--AEITLLHVIPPPPQYSF--------SAAEDEESEEEAEEEEQARQAEAE 71 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEESCHCHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhC--CeEEEEEeecccccccc--------ccccccccccccchhhhhhhHHHH
Confidence 49999999999999999999999999988 99999999987644211 011111111111111111111112
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
......+ ......+..|++.++|++++++.++|+||||+++++.+.+ +++||++.+++++++||||+.
T Consensus 72 ~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~---~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 72 EAEAEGG--IVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLER---LLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHTT--SEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTT---SSSHHHHHHHHHHTSSEEEEE
T ss_pred HHhhhcc--ceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccC---CCcCCHHHHHHHcCCCCEEEe
Confidence 2223333 7788888899999999999999999999999999999988 679999999999999999974
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.90 E-value=2.8e-22 Score=136.79 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=108.9
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+||||+|+++++..++++|..+|+..+ ++|+++|+++..+.... . ......+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~--~~v~ll~v~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQN--GEIIPLNVIEVPNHSSP----------S----QLEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCC--CeEEEEEEEecCCCCCc----------c----hhHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999888 99999999986543211 0 0112234566788888888
Q ss_pred HHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 87 YRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.| ++++..+.. |++.++|+++++++++|+||||+++++.+.+ .++||++.+++++++||||+.
T Consensus 65 ~~~~g--~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~---~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLG--VPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD---RLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcC--CceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc---eecCchHHHHHhcCCCCEEEe
Confidence 88888 888888765 6999999999999999999999999998877 679999999999999999973
No 9
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.88 E-value=8.9e-22 Score=133.29 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=100.3
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+||||+|+|+.+.++++||..+|...+ ++|+++||.++.... ..+..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~~~---------------------~~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLK--APWYVVYVETPRLNR---------------------LSEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhC--CCEEEEEEecCcccc---------------------CCHHHHHHHHHHHHH
Confidence 699999999999999999999999988 999999998754220 012234456666666
Q ss_pred HHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC-CCCeehh
Q 030672 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS-QPSRLFG 157 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~-~~pvL~~ 157 (173)
+++.+ ++.. .+..|++.+.|.++++++++|+||||+++++++.+ +++||+++++++++ +||||+.
T Consensus 58 ~~~~~--~~~~-~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~---~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEELG--AEVV-TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRE---LFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHcC--CEEE-EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHH---HhcccHHHHHHHhCCCCeEEEe
Confidence 66666 5443 23456999999999999999999999999999999 67999999999999 9999973
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.88 E-value=1.1e-21 Score=151.79 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=111.4
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
+++||||+|+|+.+..|+++|+.+|+.++ ++++++|+.++...... . ....+......+...+..++.++.+.
T Consensus 3 ~~~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (305)
T PRK11175 3 YQNILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMT-T----LLSPDEREAMRQGVISQRTAWIREQA 75 (305)
T ss_pred cceEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhh-c----ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999 99999999765332111 0 11111122222233334455666666
Q ss_pred HHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 85 AVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+.+...+ ++++..+. .|++.++|.++++++++||||||+++.+++.+ .++||++.+++++++||||+.+.
T Consensus 76 ~~~~~~~--~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~---~~~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 76 KPYLDAG--IPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLES---VIFTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHHhhcC--CceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHh---hccChhHHHHHhcCCCCEEEecc
Confidence 6666666 88888776 58999999999999999999999999998888 67999999999999999999654
No 11
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.85 E-value=6.6e-20 Score=123.74 Aligned_cols=129 Identities=31% Similarity=0.427 Sum_probs=108.6
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+||||+|+++.+..++++|..+|+..+ ++++++|+.++...... ...+......++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~--~~i~~l~v~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLG--AELVLLHVVDPPPSSAA--------------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCCCCcch--------------hHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999998 99999999876533210 22233445556677777776
Q ss_pred HHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+...+ ++++..+..|++.++|.+++++.++|+||+|+++++.+.+ .++|+++.+++++++||||+
T Consensus 65 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~---~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAEAG--VKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRR---LLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HhcCC--CceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccce---eeeccHHHHHHhCCCCCEEe
Confidence 66666 8899999999889999999999999999999999988877 67999999999999999986
No 12
>PRK11175 universal stress protein UspE; Provisional
Probab=99.83 E-value=1.7e-20 Score=145.17 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=103.6
Q ss_pred CCcEEEEEecCChHH-------HHHHHHHHhhcCCC-CCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEES-------MHALSWCLNNLFSP-DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASES 75 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s-------~~al~~A~~la~~~-~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (173)
.+++||+|+|+|+.+ ..++++|..+|+.. + ++++++||++..+....... .........+.....
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 223 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--AEVHLVNAYPVTPINIAIEL-----PEFDPSVYNDAIRGQ 223 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--CceEEEEEecCcchhccccc-----cccchhhHHHHHHHH
Confidence 478999999998753 68999999999988 7 99999999875432211000 000011111222222
Q ss_pred HHHHHHHHHHHHHhcCCceEE-EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 76 VNSVMNRAEAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
. .+.+.+..+..+ ++. ..++..|++.++|.+++++.++||||||+++++++.+ +++||++.+++++++|||
T Consensus 224 ~---~~~l~~~~~~~~--~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~---~llGS~a~~v~~~~~~pV 295 (305)
T PRK11175 224 H---LLAMKALRQKFG--IDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSA---AFLGNTAEHVIDHLNCDL 295 (305)
T ss_pred H---HHHHHHHHHHhC--CChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcc---eeecchHHHHHhcCCCCE
Confidence 2 223333344445 443 4667789999999999999999999999999999998 779999999999999999
Q ss_pred ehhhHHHH
Q 030672 155 LFGDLILF 162 (173)
Q Consensus 155 L~~~~~~~ 162 (173)
|+-++..|
T Consensus 296 Lvv~~~~~ 303 (305)
T PRK11175 296 LAIKPDGY 303 (305)
T ss_pred EEEcCCCC
Confidence 99765433
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-18 Score=119.38 Aligned_cols=148 Identities=25% Similarity=0.282 Sum_probs=117.4
Q ss_pred CCCCCcEEEEEec-CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVD-ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (173)
Q Consensus 1 m~~~~~~ILv~vd-~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
|...+++||+++| +++.+..+++++..++...+ ..+.+++|.+........... ..................+.
T Consensus 1 ~~~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 75 (154)
T COG0589 1 MPAMYKKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVA---LADAPIPLSEEELEEEAEEL 75 (154)
T ss_pred CccccceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccc---cccchhhhhHHHHHHHHHHH
Confidence 4567899999999 99999999999999999988 899999998766543221110 00000112223334566777
Q ss_pred HHHHHHHHHhcCCceE-EEEEEeeCCh-HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 80 MNRAEAVYRNFQNNIH-VKRVVGCGDA-KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~-~~~~~~~g~~-~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
++.+.+.+.+.+ +. .+..+..|++ .+.|.+++.+.++|+||||+++++.+.+ +++||++++++++++||||+.
T Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~---~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 76 LAEAKALAEAAG--VPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSR---LLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHHHHHHcC--CCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccc---eeeehhHHHHHhcCCCCEEEE
Confidence 888888888887 66 5899999988 7999999999999999999999999998 689999999999999999985
Q ss_pred h
Q 030672 158 D 158 (173)
Q Consensus 158 ~ 158 (173)
+
T Consensus 151 ~ 151 (154)
T COG0589 151 R 151 (154)
T ss_pred c
Confidence 4
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.70 E-value=6.3e-16 Score=121.32 Aligned_cols=108 Identities=14% Similarity=0.196 Sum_probs=81.9
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCC--CCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSP--DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNS 78 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~--~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
|+..|+|||||+|+|+.+.+|+++|+++|+.. + ++|++|||.+....... . . ......++
T Consensus 1 ~~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~--AeL~lL~Vv~~~~~~~~---------~---~----~~~~~~ee 62 (357)
T PRK12652 1 IMMAANRLLVPVADSVTVRQTVAYAVESAEEAAET--PTVHLVAAASGRAVDPE---------G---Q----DELAAAEE 62 (357)
T ss_pred CCcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCC--CEEEEEEEecCcccccc---------h---h----HHHHHHHH
Confidence 45689999999999999999999999999884 5 99999999886432110 0 1 11123334
Q ss_pred HHHHHHHHHHh------cCCceEEEEEEee--------CChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 79 VMNRAEAVYRN------FQNNIHVKRVVGC--------GDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 79 ~l~~~~~~~~~------~~~~v~~~~~~~~--------g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.++.+.+.+++ .| +++++.+.. |+|+++|+++|+++++|+||||....
T Consensus 63 lle~~~~~~~~~l~~~~~g--V~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 63 LLERVEVWATEDLGDDASS--VTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred HHHHHHHHHHHhhhcccCC--CceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45555544443 46 888888876 89999999999999999999997654
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.31 E-value=3.5e-11 Score=105.30 Aligned_cols=122 Identities=5% Similarity=0.017 Sum_probs=93.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
...+||||+++++.+.+++++|.++|.+.+ +++++|||..+...... .+..++ +...
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~--a~~~~l~V~~~~~~~~~--------------------~~~~~~-l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLG--SVWHAVYVETPRLHRLP--------------------EKKRRA-ILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcC--CCEEEEEEecCCcCcCC--------------------HHHHHH-HHHH
Confidence 457899999999999999999999999999 99999999865322110 011122 2233
Q ss_pred HHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC-CCeehh
Q 030672 84 EAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ-PSRLFG 157 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~-~pvL~~ 157 (173)
.+++++.| . ++++..| +++++|+++|++++++.||||.++++.+ ++.||+++++++.++ +.|.+.
T Consensus 306 ~~lA~~lG--a--~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~-----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 306 LRLAQELG--A--ETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW-----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred HHHHHHcC--C--EEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC-----ccCCCHHHHHHHhCCCCCEEEE
Confidence 35777888 4 4555666 9999999999999999999999987754 237899999999876 666664
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.26 E-value=1e-10 Score=98.50 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=99.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
..+||||++.+..+.+.+++|.++|.+.+ ++++++||..+..... .+..+..+....
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~~---------------------~~~~~~~l~~~~ 304 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVETPELHRL---------------------SEKEARRLHENL 304 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEeccccccc---------------------cHHHHHHHHHHH
Confidence 47899999999999999999999999999 9999999977654321 123445677777
Q ss_pred HHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC
Q 030672 85 AVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ 151 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~ 151 (173)
+++++.| .+++++.| +..++|.+||+.+++.-||+|.+.++.+.+ +|.|+.++++++..+
T Consensus 305 ~Lae~lG----ae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~---~~~~~l~~~L~~~~~ 365 (890)
T COG2205 305 RLAEELG----AEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRR---LFKGSLADRLAREAP 365 (890)
T ss_pred HHHHHhC----CeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHH---HhcccHHHHHHhcCC
Confidence 8888888 77777776 999999999999999999999999988887 678999999988754
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.63 E-value=2.5e-07 Score=58.36 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=70.6
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
||++++++..|..++.++.+++ ..+ .+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~--~~~~~~~~~------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGG--PEVVALVVV------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcC--CCEEEEEeH-------------------------------------------
Confidence 6899999999999999999987 445 688888774
Q ss_pred HhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhccc-chHHHHhcCCCCCeehh
Q 030672 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILA-ALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~g-s~~~~ll~~~~~pvL~~ 157 (173)
...+.+.+.++++++|+|++|+++...... .+.| +++..+++.+++|||.|
T Consensus 35 ----------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~---~~~~~~~~~~~~~~~~~~vl~P 86 (86)
T cd01984 35 ----------------AFVRILKRLAAEEGADVIILGHNADDVAGR---RLGASANVLVVIKGAGIPVLTP 86 (86)
T ss_pred ----------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhh---ccCchhhhhhcccccCCceeCc
Confidence 235667788888999999999999887776 4466 89999999999999864
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.74 E-value=0.00044 Score=60.73 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=87.7
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
..-|||+|+...++....+..+-........+-.++++|+.+........-...... ....... .......++..+.+
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~-~~~~~~~-~~~~~~~~~i~~af 534 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTR-KSGRPAL-NRTQAQSDHIINAF 534 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecc-ccccccc-ccccccccHHHHHH
Confidence 345899999988888777776544222212117899999987543221110000000 0000000 00111234566666
Q ss_pred HHHHHhcCCceEEEEEEee---CChHHHHHHHHhhcCCCEEEEecCCCChhhhh---hhhcccchHHHHhcCCCCCeeh
Q 030672 84 EAVYRNFQNNIHVKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGFIKRY---KQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~---g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~---~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+...+..+ .+.++..... .+..+.|+..|++..+++||++.+.+-...+. -.-.++.+-+++++++||+|-+
T Consensus 535 ~~~~~~~~-~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgI 612 (832)
T PLN03159 535 ENYEQHAG-CVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGI 612 (832)
T ss_pred HHHHhhcC-ceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEE
Confidence 65554332 2777755543 47899999999999999999998864221110 0023667889999999998865
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.31 E-value=0.0064 Score=53.64 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=68.0
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHH---HHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDV---IKAVEKYASESVNSVM 80 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 80 (173)
...+|.++.=+.+....|+.||.++++..+ ..+++++..+...............+++. .....+.+++.-++.+
T Consensus 629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~--v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~ 706 (832)
T PLN03159 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPG--ITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYI 706 (832)
T ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCC--eEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 345899999888889999999999999877 89999999865332210000000000000 0000111222345566
Q ss_pred HHHHHHHHhcCCceEEEEEEee-C-ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGC-G-DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~-g-~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
++++......+ .+.+.-+++. | +....|-.... ++||+|+|+++
T Consensus 707 ~ef~~~~~~~~-~v~y~E~~V~~~~e~~~~l~~~~~--~ydL~iVGr~~ 752 (832)
T PLN03159 707 NEFRARNAGNE-SIVYTEKVVSNGEETVAAIRSMDS--AHDLFIVGRGQ 752 (832)
T ss_pred HHHHHhcCCCC-ceEEEEEecCCHHHHHHHHHHhhc--cCcEEEEecCC
Confidence 66666554333 3555554443 3 33444444433 69999999754
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.24 E-value=0.0094 Score=42.94 Aligned_cols=96 Identities=18% Similarity=0.114 Sum_probs=67.7
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+|+|++++...|.-++..+..++...+ .++.++|+...... ...+..+.+.+.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~--~~v~~v~vd~g~~~-------------------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLK--IRLIAAHVDHGLRP-------------------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcC--CCEEEEEeCCCCCh-------------------------hHHHHHHHHHHH
Confidence 589999999999999999999877767 78999998654311 012235556666
Q ss_pred HHhcCCceEEEEEEeeC---------ChH--------HHHHHHHhhcCCCEEEEecCCCChh
Q 030672 87 YRNFQNNIHVKRVVGCG---------DAK--------DVICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g---------~~~--------~~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
++..| +++....... +.. ..+.+.+++++++.|+.|.+.....
T Consensus 54 ~~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~ 113 (189)
T TIGR02432 54 CKKLN--IPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA 113 (189)
T ss_pred HHHcC--CCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH
Confidence 67777 6655443321 122 5777899999999999998765433
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.06 E-value=0.038 Score=39.63 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=62.9
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+|+|++++...|..++.....+....+ .++.++||....... .....+.+.+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~--~~~~~~~vdh~~~~~-------------------------s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNG--IKLIAVHVDHGLREE-------------------------SDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTT--TEEEEEEEE-STSCC-------------------------HHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcC--CCeEEEEEecCCCcc-------------------------cchhHHHHHHH
Confidence 699999999999999999999999888 899999997754321 11234556667
Q ss_pred HHhcCCceEEEEEEee-----C-Ch--------HHHHHHHHhhcCCCEEEEecCCCChh
Q 030672 87 YRNFQNNIHVKRVVGC-----G-DA--------KDVICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~-----g-~~--------~~~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
+++.+ +++...... + +. .+.+.+.|++++++.|++|.+.....
T Consensus 54 ~~~~~--i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ 110 (182)
T PF01171_consen 54 CEQLG--IPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA 110 (182)
T ss_dssp HHHTT---EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH
T ss_pred HHhcC--CceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH
Confidence 77777 776655544 1 11 25667899999999999998764333
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.80 E-value=0.059 Score=38.50 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=66.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+|+|++++...|.-++..+.......+ .++.++|+...... ...+..+.+.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~--~~v~~v~id~~~~~-------------------------~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLG--LRLVAVHVDHGLRP-------------------------ESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcC--CcEEEEEecCCCCc-------------------------hHHHHHHHHHHH
Confidence 589999999999999999988876666 79999999653211 012345556666
Q ss_pred HHhcCCceEEEEE--E-eeCC-h----------HHHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 87 YRNFQNNIHVKRV--V-GCGD-A----------KDVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 87 ~~~~~~~v~~~~~--~-~~g~-~----------~~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
+...| ++.... . ..+. . ...+.++|++++++.|+.|.+......
T Consensus 54 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e 111 (185)
T cd01992 54 CAKLG--IPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAE 111 (185)
T ss_pred HHHcC--CcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHH
Confidence 66677 665544 1 1111 1 156778899999999999987654333
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.22 E-value=0.18 Score=38.33 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=64.3
Q ss_pred CCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 2 NTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 2 ~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
-.+..+|+|++++...|...+..+..+.+..+.+-++.++|+....... . + +
T Consensus 26 i~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~----------~--------~----------~ 77 (258)
T PRK10696 26 IEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGF----------P--------E----------H 77 (258)
T ss_pred CCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCC----------C--------H----------H
Confidence 3456799999999999999998888876554322578888875432111 0 0 0
Q ss_pred HHHHHHHhcCCceEEEEEEee-----------C-C--------hHHHHHHHHhhcCCCEEEEecCCCChh
Q 030672 82 RAEAVYRNFQNNIHVKRVVGC-----------G-D--------AKDVICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~-----------g-~--------~~~~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
.+++.+++.| +++...-.. + + -...+.++|++.+++.|++|.+.....
T Consensus 78 ~~~~~~~~lg--I~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 78 VLPEYLESLG--VPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred HHHHHHHHhC--CCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 1345666777 554433221 1 1 124566789999999999998765433
No 24
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.77 E-value=0.26 Score=40.59 Aligned_cols=87 Identities=9% Similarity=-0.034 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
.-.||..|+..|...+ .+|..+++.++..... .........+-+..+.+.+++.| ..
T Consensus 37 DN~aL~~A~~~a~~~~--~~vl~vyi~dp~~~~~-----------------~~~r~~Fl~esL~~L~~~L~~~g----~~ 93 (454)
T TIGR00591 37 DNWALIAAQTLALKKK--LPLHVCFCLVDFFLAA-----------------TRRHYFFMLGGLDEVANECERLI----IP 93 (454)
T ss_pred CCHHHHHHHHHHHHcC--CCEEEEEEeCCCcccc-----------------cHHHHHHHHHHHHHHHHHHHHcC----Cc
Confidence 3468888887766556 6899999987653321 12344566677778888888888 44
Q ss_pred EEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+..|++.+.|.+.+++++++.|+.-...
T Consensus 94 L~v~~g~~~~~l~~l~~~~~i~~V~~~~~~ 123 (454)
T TIGR00591 94 FHLLDGPPKELLPYFVDLHAAAAVVTDFSP 123 (454)
T ss_pred eEEeecChHHHHHHHHHHcCCCEEEEeccc
Confidence 567789999999999999999999998653
No 25
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=95.63 E-value=0.33 Score=34.48 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=60.6
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+|+|++++...|.-++..+..+......+.+++++|+....... .....+.+++.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~-------------------------~~~~~~~~~~~ 55 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY-------------------------RDESLEVVERL 55 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC-------------------------cHHHHHHHHHH
Confidence 58999999999998888888876655111688899886543210 00123333445
Q ss_pred HHhcCCceEEEEEEee-------------C---------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 87 YRNFQNNIHVKRVVGC-------------G---------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~-------------g---------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+...| +++...-.. + .....+.+.|++++++.|+.|.+..
T Consensus 56 ~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 56 AEELG--IELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD 117 (185)
T ss_pred HHHcC--CceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChH
Confidence 55555 444433221 0 1135667789999999999998764
No 26
>PRK12342 hypothetical protein; Provisional
Probab=95.56 E-value=0.2 Score=38.14 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=55.4
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030672 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (173)
Q Consensus 13 d~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 92 (173)
..++...+|++.|+++- .++ .+|+++++-++... ...++..+-.+-...+
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g--~~Vtvls~Gp~~a~--------------------------~~~l~r~alamGaD~a- 81 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDG--DEIAALTVGGSLLQ--------------------------NSKVRKDVLSRGPHSL- 81 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcC--CEEEEEEeCCChHh--------------------------HHHHHHHHHHcCCCEE-
Confidence 35677899999999997 677 89999999765210 0112222223222222
Q ss_pred ceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 93 NIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 93 ~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.-....| |+ +..|..++++.++|||+.|...-
T Consensus 82 -vli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~ 120 (254)
T PRK12342 82 -YLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSG 120 (254)
T ss_pred -EEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 4444333345 66 68888999998999999996543
No 27
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=94.90 E-value=0.25 Score=37.65 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=55.4
Q ss_pred EecCChHHHHHHHHHHhhcC-CCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030672 11 AVDESEESMHALSWCLNNLF-SPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRN 89 (173)
Q Consensus 11 ~vd~s~~s~~al~~A~~la~-~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 89 (173)
+...++....|++.|++|.. ..+ .+++++++-++. ++..+..+-.+-.+
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~--~eV~vlt~Gp~~----------------------------a~~~lr~aLAmGaD 81 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYG--GEVTVLTMGPPQ----------------------------AEEALREALAMGAD 81 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCC--ceEEEEEecchh----------------------------hHHHHHHHHhcCCC
Confidence 34456678899999999988 577 999999997642 11222222222112
Q ss_pred cCCceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 90 FQNNIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 90 ~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+ +-++-....+ ++ +..|...+++.+.|||++|...-
T Consensus 82 ra--ili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~ 122 (260)
T COG2086 82 RA--ILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAI 122 (260)
T ss_pred eE--EEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 22 3344323334 43 67888899999999999996543
No 28
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=94.88 E-value=0.71 Score=32.36 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=57.2
Q ss_pred EEEEEecCC-----hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDES-----EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 7 ~ILv~vd~s-----~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
+|||-.+.. +.+..++..|..++...+ .+++++.+-+... ..+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g--~~v~av~~G~~~~------------------------------~~~ 48 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALG--GEVTAVVLGPAEE------------------------------AAE 48 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTT--SEEEEEEEETCCC------------------------------HHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcC--CeEEEEEEecchh------------------------------hHH
Confidence 466666654 778999999999999998 8999998863121 123
Q ss_pred HHHHHHHhcCCceEEEEEEeeC-----C---hHHHHHHHHhhcCCCEEEEecCC
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCG-----D---AKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g-----~---~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+++.+..+| .+--+.+... + ..+.|.+.+++.++|+|++|...
T Consensus 49 ~l~~~l~~~G--~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 49 ALRKALAKYG--ADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHSTT--ESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred HHhhhhhhcC--CcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 3334444566 4333333221 1 35688899999999999999744
No 29
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=94.57 E-value=0.5 Score=36.00 Aligned_cols=87 Identities=10% Similarity=-0.074 Sum_probs=55.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030672 13 DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQN 92 (173)
Q Consensus 13 d~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 92 (173)
-.++....|++.|+++..+.+. ++|+++++-++... ....+..+-.+-.+.+
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g-~~Vtvvs~Gp~~a~--------------------------~~~~lr~aLAmGaD~a- 84 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAE-AQVTALSVGGKALT--------------------------NAKGRKDVLSRGPDEL- 84 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCC-CEEEEEEECCcchh--------------------------hHHHHHHHHHcCCCEE-
Confidence 3567789999999999887531 69999999765311 0122333333322222
Q ss_pred ceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 93 NIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 93 ~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.-....| |+ +..|..++++.++|||+.|....
T Consensus 85 -vli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~ 123 (256)
T PRK03359 85 -IVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSS 123 (256)
T ss_pred -EEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccc
Confidence 4443333333 43 67788889998999999997553
No 30
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=94.51 E-value=0.26 Score=34.68 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
.||..|+. .+ .+|..+++.++....... ..........+.+..+.+.+++.| +...
T Consensus 15 ~aL~~A~~----~~--~~v~~vfv~d~~~~~~~~--------------~~~~r~~Fl~~sL~~L~~~L~~~g----~~L~ 70 (165)
T PF00875_consen 15 PALHAAAQ----NG--DPVLPVFVFDPEEFHPYR--------------IGPRRRRFLLESLADLQESLRKLG----IPLL 70 (165)
T ss_dssp HHHHHHHH----TT--SEEEEEEEE-HHGGTTCS--------------SCHHHHHHHHHHHHHHHHHHHHTT----S-EE
T ss_pred HHHHHHHH----cC--CCeEEEEEeccccccccc--------------CcchHHHHHHHHHHHHHHHHHhcC----cceE
Confidence 45666633 35 789999999876211100 002344566677788888888888 6688
Q ss_pred EeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 100 VGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 100 ~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
++.|++.+.+.+.+++.+++.|+......
T Consensus 71 v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 99 (165)
T PF00875_consen 71 VLRGDPEEVLPELAKEYGATAVYFNEEYT 99 (165)
T ss_dssp EEESSHHHHHHHHHHHHTESEEEEE---S
T ss_pred EEecchHHHHHHHHHhcCcCeeEeccccC
Confidence 89999999999999999999999886543
No 31
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=1.8 Score=33.33 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=61.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
.+|+|++++...|.-++.....+... .++.++||.+...... ....+....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~~~~~~~-------------------------~~~~~~~~~ 72 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDHGLRGYS-------------------------DQEAELVEK 72 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecCCCCCcc-------------------------chHHHHHHH
Confidence 69999999999999999888887554 4899999977543311 112333334
Q ss_pred HHHhcCC-ceEEEEEEeeC-------Ch--------HHHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 86 VYRNFQN-NIHVKRVVGCG-------DA--------KDVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 86 ~~~~~~~-~v~~~~~~~~g-------~~--------~~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
.+...+. -+...+....+ ++ ...+.+.|++.++|.|+.|.+......
T Consensus 73 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~e 135 (298)
T COG0037 73 LCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAE 135 (298)
T ss_pred HHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHH
Confidence 4444441 01111111111 11 355677899999999999988765443
No 32
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=92.58 E-value=2.2 Score=34.93 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCC-cCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSS-FDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
-.||..|+.. + .+|..|+|.++...... .+. . . ...........+-++.+++.+++.| +.
T Consensus 16 N~aL~~A~~~----~--~~vl~vfi~dp~~~~~~~~~~----~-~----~~~~~r~~Fl~esL~~L~~~L~~~g----~~ 76 (429)
T TIGR02765 16 NPALYKASSS----S--DTLIPLYCFDPRQFKLTHFFG----F-P----KTGPARGKFLLESLKDLRTSLRKLG----SD 76 (429)
T ss_pred HHHHHHHHhc----C--CeEEEEEEECchHhccccccc----c-C----CCCHHHHHHHHHHHHHHHHHHHHcC----CC
Confidence 3466666643 3 47899999886432210 000 0 0 0012333456667777777788777 44
Q ss_pred EEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
..+..|++.+.|.+.+++.+++.|+.-.....
T Consensus 77 L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~ 108 (429)
T TIGR02765 77 LLVRSGKPEDVLPELIKELGVRTVFLHQEVGS 108 (429)
T ss_pred eEEEeCCHHHHHHHHHHHhCCCEEEEeccCCH
Confidence 56678999999999999999999999865543
No 33
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=92.34 E-value=2.6 Score=32.90 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.+.+++|++++...|.-.+..|.+.....+ .++.++|+.....+. +.++-.
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~--~~~~vl~iDTG~~Fp---------------------------Et~ef~ 76 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGK--LPFPLLHVDTGWKFP---------------------------EMIEFR 76 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccC--CCeeEEEEeCCCCCH---------------------------HHHHHH
Confidence 357899999999999988888877655434 578899886543221 122223
Q ss_pred HHHHHhcCCceEEEEEEe-----eC-Ch-------------HHHHHHHHhhcCCCEEEEecCCCC
Q 030672 84 EAVYRNFQNNIHVKRVVG-----CG-DA-------------KDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~-----~g-~~-------------~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.+.++++| +++..... .| .+ ...+.++++++++|.++.|.+..-
T Consensus 77 d~~a~~~g--l~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 77 DRRAKELG--LELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred HHHHHHhC--CCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 33445566 55544321 12 11 255778889999999999987643
No 34
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.48 E-value=0.86 Score=35.69 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=39.1
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhc-------CCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKL-------EADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~-------~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+-...+.| ....+|++..++. ++|+||+++.|.+ ..... .|-.-...+-+..|++||+-
T Consensus 44 ~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~eDL~-~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 44 IILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-IEDLW-AFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred EEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC-hHHhc-ccChHHHHHHHHhCCCCEEE
Confidence 5555666668 6677777765543 4899999977754 33311 22222444667889999997
No 35
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=91.28 E-value=5.2 Score=30.29 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..++++|++++.-.|.-++..+.+. + .++..+|+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g--~~v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----G--TEVLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----C--CCEEEEEecC
Confidence 4678999999999998888777664 6 6888898854
No 36
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=91.25 E-value=1.8 Score=30.27 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~ 133 (173)
.++.+.+.++++| ++++..+..- ...+.+.+| +++.++..+|-|..|...+.+
T Consensus 17 ~mk~Aa~~L~~fg--i~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPG 73 (162)
T COG0041 17 TMKKAAEILEEFG--VPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPG 73 (162)
T ss_pred HHHHHHHHHHHcC--CCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcch
Confidence 4555666677788 9999888875 555555554 567888999999988777776
No 37
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=90.72 E-value=4.7 Score=33.22 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=47.0
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhc-CCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNL-FSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la-~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
+.++|+|++++...|...+.....+. ...+ .+++++||...... ...+..+.
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~--~~l~a~hvnhglr~-------------------------~s~~~~~~ 66 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPG--VTLRAIHVHHGLSP-------------------------NADSWVKH 66 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCC--CeEEEEEEeCCCCc-------------------------chHHHHHH
Confidence 45899999999999998888887764 2335 79999999764321 11223455
Q ss_pred HHHHHHhcCCceEEEEEE
Q 030672 83 AEAVYRNFQNNIHVKRVV 100 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~ 100 (173)
+++.|++.+ +++...-
T Consensus 67 ~~~~~~~l~--i~~~~~~ 82 (436)
T PRK10660 67 CEQVCQQWQ--VPLVVER 82 (436)
T ss_pred HHHHHHHcC--CcEEEEE
Confidence 667777888 6665543
No 38
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=90.59 E-value=3.1 Score=34.62 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
-.||..|+. .+ .+|.++++.++....... ..........+-+..+.+.+++.| +..
T Consensus 16 N~AL~~A~~----~~--~~vl~vfi~dp~~~~~~~--------------~~~~r~~Fl~esL~~L~~~L~~~G----~~L 71 (471)
T TIGR03556 16 NIGLAAARQ----QS--AKVVGLFCLDPNILQADD--------------MAPARVAYLIGCLQELQQRYQQAG----SQL 71 (471)
T ss_pred HHHHHHHHh----cC--CCEEEEEEEchhhhcccc--------------CCHHHHHHHHHHHHHHHHHHHHCC----CCe
Confidence 346666664 34 579999998864321100 001223455666777777777777 445
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+..|++.+.|.+.+++.+++.|+.-...
T Consensus 72 ~v~~G~p~~vl~~l~~~~~~~~V~~~~~~ 100 (471)
T TIGR03556 72 LILQGDPVQLIPQLAQQLGAKAVYWNLDV 100 (471)
T ss_pred EEEECCHHHHHHHHHHHcCCCEEEEeccc
Confidence 77789999999999999999999977554
No 39
>PRK13820 argininosuccinate synthase; Provisional
Probab=90.31 E-value=7.4 Score=31.65 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCC-eEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNN-TLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~-~l~~l~v~~ 45 (173)
++++|+|++++.-.|.-++.++... .+ . +++++|+..
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~g--~~~Viav~vd~ 38 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---YG--YDEVITVTVDV 38 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---cC--CCEEEEEEEEC
Confidence 3689999999999999888887542 34 5 899999965
No 40
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=89.47 E-value=1.4 Score=30.05 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhhH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGDL 159 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~~ 159 (173)
+...++..| ++..-..+ .+.+++++.+.++++|.+++++...+.... +..+...+-... .++|+.|..
T Consensus 22 v~~~l~~~G----feVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~-----~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 22 IATAYADLG----FDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTL-----VPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred HHHHHHhCC----cEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHH-----HHHHHHHHHhcCCCCCEEEEeCC
Confidence 344555677 44443443 678899999999999999998876544443 444555553322 577888853
No 41
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.99 E-value=1.2 Score=32.47 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=47.8
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC---CCCeehhhH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS---QPSRLFGDL 159 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~---~~pvL~~~~ 159 (173)
+...++..| .++ .....+.|.+.+++.++++++|+|.+.......... +......+=... .++|++|+.
T Consensus 102 v~~~l~~~G--~~v-i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~-----~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 102 VATMLEANG--FEV-IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG-----MKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHCC--CEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH-----HHHHHHHHHHCCCCcCCeEEEECC
Confidence 344566677 444 112345789999999999999999998755444443 334444443433 478999876
Q ss_pred HHHHH
Q 030672 160 ILFQI 164 (173)
Q Consensus 160 ~~~~~ 164 (173)
...+.
T Consensus 174 ~~~~~ 178 (201)
T cd02070 174 PVNQE 178 (201)
T ss_pred cCCHH
Confidence 55443
No 42
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.85 E-value=2.4 Score=27.91 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhhH
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGDL 159 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~~ 159 (173)
-+...++..| .++ .......+.+.+.+.+.+.++|+|+++......... .-...+.+=... .+++++|..
T Consensus 18 ~~~~~l~~~G--~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~-----~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 18 IVARALRDAG--FEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTL-----MKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHHCC--CEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH-----HHHHHHHHHHcCCCCCeEEEECC
Confidence 3444556677 544 122234778999999999999999998764333332 222233332223 477888665
Q ss_pred HH
Q 030672 160 IL 161 (173)
Q Consensus 160 ~~ 161 (173)
..
T Consensus 90 ~~ 91 (119)
T cd02067 90 IV 91 (119)
T ss_pred CC
Confidence 43
No 43
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=88.11 E-value=2.3 Score=34.89 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=38.9
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcC---CCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLE---ADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~---~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+-...+.| .....|++..+..+ +|+||+++.|.+ ..... .|-.-....-+..|++||+-
T Consensus 165 ~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS-~eDL~-~Fn~e~v~~ai~~~~~Pvis 229 (438)
T PRK00286 165 VIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS-LEDLW-AFNDEAVARAIAASRIPVIS 229 (438)
T ss_pred EEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC-HHHhh-ccCcHHHHHHHHcCCCCEEE
Confidence 4444555668 67788877665444 599999977754 33311 23333445667789999987
No 44
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=88.01 E-value=11 Score=29.40 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=32.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
+.++++++++...|.-++..+.+.....+ .++.++|+....
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~--~p~~vl~IDTG~ 59 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGP--LPFPLLHVDTGW 59 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccC--CCeEEEEEecCC
Confidence 45678899999999999988888766444 688999996643
No 45
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.66 E-value=8.3 Score=28.03 Aligned_cols=92 Identities=7% Similarity=0.048 Sum_probs=57.5
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
++|.-.++--..-+.+.|..+..+ + .++.+++..... . ...++++.++
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~--~~v~lis~D~~R-~----------------------------ga~eQL~~~a 52 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-G--KKVALISADTYR-I----------------------------GAVEQLKTYA 52 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSS-T----------------------------HHHHHHHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-c--ccceeecCCCCC-c----------------------------cHHHHHHHHH
Confidence 355556666667788888888777 6 799999873321 1 1345555566
Q ss_pred HhcCCceEEEEEEeeCChHHHH---HHHHhhcCCCEEEEecCCCChhhh
Q 030672 88 RNFQNNIHVKRVVGCGDAKDVI---CGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g~~~~~I---~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
+..+ +++...-...++.+.+ ++..+..++|+|++-+.|++....
T Consensus 53 ~~l~--vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 53 EILG--VPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp HHHT--EEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred HHhc--cccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 6666 6665543344565544 445566789999999999876543
No 46
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.49 E-value=2.2 Score=28.40 Aligned_cols=69 Identities=9% Similarity=0.018 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC--CCCCeehhh
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN--SQPSRLFGD 158 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~--~~~pvL~~~ 158 (173)
-+...++..| ++..-... .|.+.+++.+.+.++|.|+++......... .....+.+-.. ..+++++|.
T Consensus 18 ~~~~~l~~~G----~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~-----~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 18 VIARALRDAG----FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTL-----FPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHH-----HHHHHHHHHhcCCCCCEEEEEC
Confidence 3344566677 44444444 888999999999999999998765443332 23333333222 157788874
Q ss_pred H
Q 030672 159 L 159 (173)
Q Consensus 159 ~ 159 (173)
.
T Consensus 89 ~ 89 (122)
T cd02071 89 I 89 (122)
T ss_pred C
Confidence 3
No 47
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=87.28 E-value=8.6 Score=27.33 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=50.8
Q ss_pred EEEEEec---------CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVD---------ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVN 77 (173)
Q Consensus 7 ~ILv~vd---------~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (173)
+|+|.++ ..+.+..++..|..++. .+ .++.++.+-+... +
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~--~~v~~v~~G~~~~-------------------------~--- 49 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YG--GEVTALVIGPPAA-------------------------E--- 49 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cC--CeEEEEEECChHH-------------------------H---
Confidence 4666666 56667899999999977 55 6777776643210 0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEe----eC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVG----CG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~----~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..+. .+..+| ..--..+- .+ ++ .+.|.+.+++.++|+|++|....
T Consensus 50 ~~~~----~~~~~G--ad~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 50 VALR----EALAMG--ADKVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHH----HHHHhC--CCEEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCccc
Confidence 0111 112344 32222221 11 22 47788888999999999998665
No 48
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=85.71 E-value=8.6 Score=27.02 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++++| ++++..+..- ...+.+.++ +++.+++.+|.+....+.+.+
T Consensus 13 ~~~~a~~~L~~~g--i~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg 69 (156)
T TIGR01162 13 TMKKAADILEEFG--IPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG 69 (156)
T ss_pred HHHHHHHHHHHcC--CCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH
Confidence 4556666677788 8888887764 444444444 556789998888887777776
No 49
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.31 E-value=4.6 Score=33.23 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=37.6
Q ss_pred eEEEEEEeeC-ChHHHHHHHHh----hcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVE----KLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~----~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+-...+.| .....|+...+ ..++|+||+|+.|.+ ..... .|-.-....-+..|++||+-
T Consensus 159 ~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs-~eDL~-~Fn~e~~~rai~~~~~Pvis 224 (432)
T TIGR00237 159 VVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS-LEDLW-SFNDEKVARAIFLSKIPIIS 224 (432)
T ss_pred EEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC-HHHhh-hcCcHHHHHHHHcCCCCEEE
Confidence 4444555567 66677776554 234799999977754 33311 23333444557889999986
No 50
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=85.29 E-value=12 Score=27.29 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=55.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
+||.|-++++-....|+--|+. ....+ +++.++-...+.. ..++++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~--a~i~~Visd~~~A-----------------------------~~lerA-- 46 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLD--AEIVAVISDKADA-----------------------------YALERA-- 46 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCC--cEEEEEEeCCCCC-----------------------------HHHHHH--
Confidence 4788999998888889888888 44445 7887775533221 134443
Q ss_pred HHHhcCCceEEEEEEeeCC-----hHHHHHHHHhhcCCCEEEEec
Q 030672 86 VYRNFQNNIHVKRVVGCGD-----AKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~-----~~~~I~~~a~~~~~dllV~G~ 125 (173)
++.| ++....-..+. -..+|.+..+++++|+||+..
T Consensus 47 --~~~g--Ipt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 47 --AKAG--IPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred --HHcC--CCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 3455 66544444332 357899999999999999963
No 51
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=84.88 E-value=17 Score=28.60 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.7
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
+.++++++++...|.-.+..+.+.+...+ .++-++||....
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~--~~~pvl~VDTG~ 77 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTR--PPFPLLHVDTTW 77 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccC--CCeeEEEeCCCC
Confidence 56788999999999999999888766545 678899985543
No 52
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=84.84 E-value=12 Score=26.93 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=54.7
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
|+|++++...|.-++..+.... + .++.++|+...... ....+.+++.+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~--~~v~~v~vd~g~~~---------------------------~~~~~~~~~~a 48 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---G--DRVLAVTATSPLFP---------------------------RRELEEAKRLA 48 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---C--CcEEEEEeCCCCCC---------------------------HHHHHHHHHHH
Confidence 6899999999988887776652 2 37888888643210 11244445555
Q ss_pred HhcCCceEEEEEEee------------------C-ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 88 RNFQNNIHVKRVVGC------------------G-DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~------------------g-~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+..| ++....-.. . -....+.+++++.+++.|+.|.+..
T Consensus 49 ~~lg--i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 49 KEIG--IRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHcC--CcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 6666 444433221 0 1134566789999999999997653
No 53
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=84.48 E-value=20 Score=28.91 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
|..+.++|+|++++.-.|.-++.... ..+ .++..+++.
T Consensus 1 ~~~~~~kVlVa~SGGvDSsv~a~lL~----~~G--~eV~av~~~ 38 (362)
T PRK14664 1 MKESKKRVLVGMSGGIDSTATCLMLQ----EQG--YEIVGVTMR 38 (362)
T ss_pred CCCCCCEEEEEEeCCHHHHHHHHHHH----HcC--CcEEEEEec
Confidence 66778899999999888876665433 346 788888883
No 54
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=84.46 E-value=20 Score=28.88 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=59.9
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
|-.+.++|+|++++.-.|.-++..+.+ .+ .+++.+|+....... . ...+
T Consensus 1 ~~~~~~kVlValSGGVDSsvaa~LL~~----~G--~~V~~v~~~~~~~~~----------~---------------~~d~ 49 (360)
T PRK14665 1 MMEKNKRVLLGMSGGTDSSVAAMLLLE----AG--YEVTGVTFRFYEFNG----------S---------------TEYL 49 (360)
T ss_pred CCCCCCEEEEEEcCCHHHHHHHHHHHH----cC--CeEEEEEEecCCCCC----------C---------------hHHH
Confidence 667778999999999888877666654 36 789998886421100 0 1124
Q ss_pred HHHHHHHHhcCCceEEEEEEe-----------------eC---Ch---------HHHHHHHHhhcCCCEEEEecCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVG-----------------CG---DA---------KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~-----------------~g---~~---------~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+.+++.++..| ++....-. .| +| ...+.++|++.++|.|+.|..-
T Consensus 50 ~~a~~va~~Lg--Ip~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya 123 (360)
T PRK14665 50 EDARALAERLG--IGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYV 123 (360)
T ss_pred HHHHHHHHHhC--CCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 45555666666 44433211 12 11 2456688999999999999665
No 55
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.97 E-value=6.4 Score=26.71 Aligned_cols=65 Identities=9% Similarity=-0.075 Sum_probs=40.6
Q ss_pred HHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC--CCCCeehhhH
Q 030672 86 VYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN--SQPSRLFGDL 159 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~--~~~pvL~~~~ 159 (173)
.++..| ++..-. ...+.+.+++.|.++++|+|.+++--.+.... +..+...+-.+ ..+||++|..
T Consensus 22 ~L~~~G----feVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~-----~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 22 AFTEAG----FNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEID-----CKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHH-----HHHHHHHHHHCCCCCCeEEEECC
Confidence 455566 333222 23778999999999999999998755444332 22233333222 2588998775
No 56
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=83.76 E-value=1.2 Score=28.90 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=30.0
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHH
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQ 163 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~ 163 (173)
+-.+.|.++|+++++|++|+|.... + .--.++ .++...+||+=+..-..|
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE~p--L-------~~Gl~D-~l~~~gi~vfGP~k~aA~ 98 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPEAP--L-------VAGLAD-ALRAAGIPVFGPSKEAAR 98 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSHHH--H-------HTTHHH-HHHHTT-CEES--HHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEECChHH--H-------HHHHHH-HHHHCCCcEECcCHHHHh
Confidence 5589999999999999999997432 1 111223 334456776655544443
No 57
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=82.24 E-value=5.6 Score=27.21 Aligned_cols=69 Identities=7% Similarity=-0.048 Sum_probs=42.9
Q ss_pred HHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC--CCCCeehhhH
Q 030672 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN--SQPSRLFGDL 159 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~--~~~pvL~~~~ 159 (173)
+...++..| ++..-.- ..|.+.+.+.+.++++|+|.++......... +..+.+.+-.. ..+++++|..
T Consensus 23 v~~~lr~~G----~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~-----~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 23 LDRALTEAG----FEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEID-----CRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHH-----HHHHHHHHHhcCCCCCeEEEECC
Confidence 334556677 4433333 4789999999999999999998765443332 22333333222 1467777665
Q ss_pred H
Q 030672 160 I 160 (173)
Q Consensus 160 ~ 160 (173)
+
T Consensus 94 ~ 94 (137)
T PRK02261 94 L 94 (137)
T ss_pred C
Confidence 4
No 58
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=81.52 E-value=15 Score=25.58 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=49.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+++|.+++...|.-++..+... + .++.++++...... .. . .+.+.+.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~--~~v~~~~~~~~~~~------------~~--------~-------~~~~~~~ 47 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----G--YEVHALSFDYGQRH------------AK--------E-------EEAAKLI 47 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----C--CcEEEEEEECCCCC------------hh--------H-------HHHHHHH
Confidence 5899999999998887777652 5 57888888643210 00 0 0112222
Q ss_pred HHhcCCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 87 YRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
++..|+ .... ..... ....+.++|++++++.|+.|....
T Consensus 48 ~~~~g~-~~~~--~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 48 AEKLGP-STYV--PARNLIFLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHCC-CEEE--eCcCHHHHHHHHHHHHHCCCCEEEEeeccC
Confidence 222331 1111 11122 234566788999999999998764
No 59
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=81.47 E-value=12 Score=24.42 Aligned_cols=71 Identities=8% Similarity=-0.036 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC-CCCCeehhh
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN-SQPSRLFGD 158 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~-~~~pvL~~~ 158 (173)
......+++.| .++. .... ...+.+.+.+++.++|+|.++......... .-..++.+=.. -.+++++|+
T Consensus 18 ~~la~~l~~~G--~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~-----~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAG--HEVD--ILDANVPPEELVEALRAERPDVVGISVSMTPNLPE-----AKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHHHHTT--BEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH-----HHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHHCC--CeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH-----HHHHHHHHHhcCCCCEEEEEC
Confidence 33444555567 5444 4443 346999999999999999998754444433 23334443222 357888866
Q ss_pred HH
Q 030672 159 LI 160 (173)
Q Consensus 159 ~~ 160 (173)
..
T Consensus 89 ~~ 90 (121)
T PF02310_consen 89 PH 90 (121)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 60
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.44 E-value=6.9 Score=28.49 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=47.9
Q ss_pred HHHHHHhcCCceEEEEEE-eeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC---CCCCeehhh
Q 030672 83 AEAVYRNFQNNIHVKRVV-GCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN---SQPSRLFGD 158 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~-~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~---~~~pvL~~~ 158 (173)
+...++..| ++..- ..+.|.+.+++.+++.++|+|.+...-...... +......+=.. ..+++++|.
T Consensus 104 v~~~l~~~G----~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~-----~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 104 VVTMLRANG----FDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG-----QKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred HHHHHHhCC----cEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHH-----HHHHHHHHHHcCCCCCCEEEEEC
Confidence 334555677 44442 335889999999999999999999766555544 33444444443 237889987
Q ss_pred HHHHHH
Q 030672 159 LILFQI 164 (173)
Q Consensus 159 ~~~~~~ 164 (173)
....+.
T Consensus 175 ~~~~~~ 180 (197)
T TIGR02370 175 APVTQD 180 (197)
T ss_pred hhcCHH
Confidence 665443
No 61
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=80.28 E-value=10 Score=25.90 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=41.1
Q ss_pred HHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC--CCCCeehhh
Q 030672 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN--SQPSRLFGD 158 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~--~~~pvL~~~ 158 (173)
+...++..| ++..-.- ..+.+.+++.|+++++|+|.+++.-.+.... +..+.+.+-.+ ..+++++|.
T Consensus 21 v~~~l~~~G----feVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~-----~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 21 LDHAFTNAG----FNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEID-----CKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred HHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHH-----HHHHHHHHHHCCCCCCEEEecC
Confidence 344556677 3333332 3778999999999999999998765443332 33344444222 246677766
No 62
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=80.01 E-value=3 Score=28.64 Aligned_cols=53 Identities=9% Similarity=-0.046 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 105 AKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 105 ~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
..+.|.+.+++++++.+|+|-.-. ++.........-..+.+|-.+.++||.+-
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~ 95 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLV 95 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 378899999999999999994321 11110000123345666666667888774
No 63
>TIGR00930 2a30 K-Cl cotransporter.
Probab=79.48 E-value=51 Score=30.27 Aligned_cols=96 Identities=10% Similarity=0.087 Sum_probs=59.2
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
-+|||.+.........+++|..+.+.. +-..+.||.+.+... ..++.+...++..+
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~---------------------~~~~~~~~~~~~~~ 631 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLE---------------------CVKEAQAAEAKIQT 631 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhh---------------------hHHHHHHHHHHHHH
Confidence 378999988888889999999998644 477888887653210 01111222233333
Q ss_pred HHHhcCCceEEEEEEeeC-ChHHHHHHHHhh-----cCCCEEEEecCC
Q 030672 86 VYRNFQNNIHVKRVVGCG-DAKDVICGTVEK-----LEADTLVMGSHG 127 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~-----~~~dllV~G~~~ 127 (173)
..+..+ ++.-..+... +..+++....+- -++..|+||...
T Consensus 632 ~~~~~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 632 WLEKNK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHhC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 344444 5555445544 677776666553 457888998754
No 64
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=78.93 E-value=4.5 Score=29.27 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=30.7
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
|+||++++.+|-.+.++.+.+..|.+..+ .+++++-.
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g--~~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGE--IETHLVIS 37 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcC--CeEEEEEC
Confidence 58999999999999999999999966456 77776643
No 65
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.93 E-value=19 Score=25.11 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhh---cCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEK---LEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~---~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++++| +.++..+..- ...+.+.+++++ .+++.+|.+....+.+..
T Consensus 15 ~~~~a~~~L~~~g--i~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpg 71 (150)
T PF00731_consen 15 IAEEAAKTLEEFG--IPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPG 71 (150)
T ss_dssp HHHHHHHHHHHTT---EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchh
Confidence 4566777777788 8998888775 556666666654 467888888777776765
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=78.11 E-value=30 Score=26.81 Aligned_cols=85 Identities=13% Similarity=0.215 Sum_probs=54.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++.....++-.+..- ...+ +++.++-...+ . +
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~--~~i~~visn~~--~--------------------------~------- 124 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELD--AEIALVISNHE--D--------------------------L------- 124 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCC--cEEEEEEEcCh--h--------------------------H-------
Confidence 5689999999998888888887664 3334 56666533221 0 0
Q ss_pred HHHHHhcCCceEEEEEEee-C---ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGC-G---DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~-g---~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
...+++.| +++...... . .....+.+..+++++|++|+..-.+
T Consensus 125 ~~~A~~~g--Ip~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym~ 171 (280)
T TIGR00655 125 RSLVERFG--IPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYMQ 171 (280)
T ss_pred HHHHHHhC--CCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCchh
Confidence 11245566 766554332 1 2245788999999999999986543
No 67
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=77.03 E-value=26 Score=25.57 Aligned_cols=35 Identities=11% Similarity=-0.049 Sum_probs=26.1
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.++.-.++.+..++..+..+++..+ .++.++.+-+
T Consensus 28 ~~~~vi~e~~~~~l~ea~~la~~~g--~~v~av~~G~ 62 (202)
T cd01714 28 GVPLIINPYDEYAVEEALRLKEKYG--GEVTVVSMGP 62 (202)
T ss_pred CCCccCChHhHHHHHHHHHhhhhcC--CEEEEEEECC
Confidence 3455567778889999999988777 7887776643
No 68
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=76.70 E-value=35 Score=26.86 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=55.8
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
|...+..+||.-|....-.....-.+..|. +|+++.+.++.|... .++.... ++....+.+
T Consensus 240 mPAGPSEVLVIADE~a~p~~vA~DLLSQAE-HG~DSQviLv~V~lS---------------~~~~~~I---q~ai~~qal 300 (446)
T KOG2697|consen 240 MPAGPSEVLVIADEHASPVYVAADLLSQAE-HGPDSQVILVVVGLS---------------VDMLNAI---QEAIAKQAL 300 (446)
T ss_pred cCCCCceEEEEecCCCChHHHHHHHHhHhh-cCCCceEEEEEecCC---------------HHHHHHH---HHHHHHHHh
Confidence 667788899998886654433333333333 345588998887543 2222333 333344444
Q ss_pred HHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
..-+....+.. +.-.+.+...+ .++-+++...+.+.-+|+--....
T Consensus 301 ~LpR~~i~~ka--i~hS~iV~~d~-~~eA~e~SNlYaPEHLil~vknA~ 346 (446)
T KOG2697|consen 301 SLPRGEIASKA--ISHSFIVFADD-MIEAIEFSNLYAPEHLILNVKNAE 346 (446)
T ss_pred cCcHHHHHHHH--hhhceEEEecC-HHHHHhhhhccCchhheeeccchh
Confidence 44333333333 33344444444 444455666666666666544433
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=76.19 E-value=34 Score=26.52 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=54.7
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|.++++.....++-.+..- ...+ ++|.++-...+ .+
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~--~~i~~visn~~-----------------------------------~~ 129 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELP--VEIAAVISNHD-----------------------------------DL 129 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCC--cEEEEEEEcCh-----------------------------------hH
Confidence 6778999999988888887777654 3334 66666644221 11
Q ss_pred HHHHHhcCCceEEEEEEee----CChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGC----GDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~----g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
...+++.| +++...... .+....+.+..++.++|++|+..-.+
T Consensus 130 ~~lA~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 130 RSLVERFG--IPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred HHHHHHhC--CCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchh
Confidence 11255566 666553221 23455788999999999999986554
No 70
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=76.10 E-value=41 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=27.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+|++++++.-.|.-++.++.+. + .+++++|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g--~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----G--YEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----C--CEEEEEEEecC
Confidence 5899999999998888887653 6 79999999653
No 71
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=75.67 E-value=12 Score=24.17 Aligned_cols=67 Identities=6% Similarity=-0.029 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.++.++.+++.| ++++.... ...++.+... ++|++++|..-+-.+.. ..+......+||-.-+
T Consensus 16 la~km~~~a~~~g--i~~~i~a~---~~~e~~~~~~--~~Dvill~PQv~~~~~~---------i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 16 LANALNKGAKERG--VPLEAAAG---AYGSHYDMIP--DYDLVILAPQMASYYDE---------LKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHHCC--CcEEEEEe---eHHHHHHhcc--CCCEEEEcChHHHHHHH---------HHHHhhhcCCCEEEeC
Confidence 4555666667777 66553322 2334555666 88999999876554444 4666777778887644
Q ss_pred HHH
Q 030672 159 LIL 161 (173)
Q Consensus 159 ~~~ 161 (173)
...
T Consensus 80 ~~~ 82 (99)
T cd05565 80 GKQ 82 (99)
T ss_pred HHH
Confidence 433
No 72
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=75.46 E-value=33 Score=26.00 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=57.2
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
.=|+--+.......++.++.+|++.+ .. ...|.. .+....++--....++ ++........+..+...+
T Consensus 30 aNIACG~HAGDp~~M~~tv~lA~~~g--V~-iGAHPs--yPD~~gFGRr~m~~s~-------~el~~~v~yQigaL~~~a 97 (242)
T PF03746_consen 30 ANIACGFHAGDPETMRRTVRLAKEHG--VA-IGAHPS--YPDREGFGRRSMDISP-------EELRDSVLYQIGALQAIA 97 (242)
T ss_dssp EEEE-SSSS--HHHHHHHHHHHHHTT---E-EEEE-----S-TTTTT-S-----H-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccCHHHHHHHHHHHHHcC--CE-eccCCC--CCCCCCCCCCCCCCCH-------HHHHHHHHHHHHHHHHHH
Confidence 34566666777888999999999988 33 334443 3233222211111222 223344445566666777
Q ss_pred HhcCCceEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 88 RNFQNNIHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+..| .++..+--.| ..++.|++.+++.+.++.++|..+.
T Consensus 98 ~~~g--~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ags 146 (242)
T PF03746_consen 98 AAEG--VPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAGS 146 (242)
T ss_dssp HHTT----EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETTS
T ss_pred HHcC--CeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCCc
Confidence 7787 7766655433 3468899999999999999997653
No 73
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=75.17 E-value=17 Score=32.29 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=33.9
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP 48 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~ 48 (173)
..+|.+..=+......|+.++..++.+.. ..++++...+...
T Consensus 614 ~~~v~~lF~GG~DDrEALa~~~rm~~~~~--v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 614 SYKVVVLFLGGKDDREALALAKRMAENPR--VTLTVIRFFPDES 655 (769)
T ss_pred eeEEEEEecCChhhHHHHHHHHHHhhCCc--eEEEEEEeeccch
Confidence 34666666677777889999999999777 8999999988654
No 74
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=74.84 E-value=24 Score=24.10 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=27.4
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+|+|++++...|.-++..+....... .++.++++...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~---~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL---KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc---cCceEEEeCCC
Confidence 58899999999998888887764421 26778877553
No 75
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=73.84 E-value=14 Score=30.55 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=37.9
Q ss_pred eEEEEEEeeC-ChHHHHHHHHh----hcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVE----KLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~----~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+-+-...+.| +...+|++.++ ...+|+||+|+.|. ..+... .|-.-...+-+..|.+||.-
T Consensus 165 viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG-SiEDLW-~FNdE~vaRAi~~s~iPvIS 230 (440)
T COG1570 165 VIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG-SIEDLW-AFNDEIVARAIAASRIPVIS 230 (440)
T ss_pred EEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc-hHHHHh-ccChHHHHHHHHhCCCCeEe
Confidence 4444555567 77788877654 33499999997664 444411 22222344557789999986
No 76
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.38 E-value=15 Score=27.13 Aligned_cols=75 Identities=8% Similarity=-0.031 Sum_probs=48.4
Q ss_pred HHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhc-CCCCCeehhhHH
Q 030672 83 AEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLP-NSQPSRLFGDLI 160 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~-~~~~pvL~~~~~ 160 (173)
+...++..| ++..-.- ..|.+.+++.++++++|+|.++..-...... +..+.+.+-. ...++|++|..+
T Consensus 108 v~~~l~~~G----~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~-----~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 108 VGVILSNNG----YEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDE-----MVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHhCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHH-----HHHHHHHHHhcCCCCeEEEEChh
Confidence 344555677 3333333 4789999999999999999998765544443 3333444432 247889998876
Q ss_pred HHHHhh
Q 030672 161 LFQILQ 166 (173)
Q Consensus 161 ~~~~~~ 166 (173)
.-+...
T Consensus 179 ~~~~~~ 184 (213)
T cd02069 179 TSRKHT 184 (213)
T ss_pred cCHHHH
Confidence 555444
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=73.16 E-value=42 Score=26.13 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
..+||.|-++++.....++-.+..- ...+ +++.++-...+ . .
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~-~~l~--~~i~~visn~~--~-----------------------------~---- 133 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRM-GELD--MDIVGIISNHP--D-----------------------------L---- 133 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHC-CCCC--cEEEEEEECCh--h-----------------------------H----
Confidence 4568999999988888888888764 3334 56655532211 0 1
Q ss_pred HHHHHhcCCceEEEEEEee----CChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGC----GDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~----g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++...-.. ......+.+..+++++|++|+..-.+
T Consensus 134 ~~~A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~ 180 (289)
T PRK13010 134 QPLAVQHD--IPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ 180 (289)
T ss_pred HHHHHHcC--CCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhh
Confidence 24456677 766543222 12346789999999999999986543
No 78
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=73.14 E-value=50 Score=26.96 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=40.8
Q ss_pred CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC---CCCeeh
Q 030672 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS---QPSRLF 156 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~---~~pvL~ 156 (173)
....+++..++.+.++..+|+|..=.+.-+..- .++++.++.+.++- ..|+++
T Consensus 257 ~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg-~v~asiarev~~~g~Pf~~P~~l 312 (422)
T COG2379 257 RLSLEAAASEARALGFKAVILGDTIEGEAREVG-RVHASIAREVARRGRPFKKPVVL 312 (422)
T ss_pred HHHHHHHHHHHHhcCCeeEEeeccccccHHHHH-HHHHHHHHHHHHcCCCCCCCEEE
Confidence 466789999999999999999986555444333 67999999998876 566654
No 79
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.04 E-value=43 Score=27.77 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=60.6
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
.+|.+-+|--..-+-..|..+-+ .+ -++-++.+....+ .+.++++.++
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~--~kvllVaaD~~Rp-----------------------------AA~eQL~~La 151 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KG--KKVLLVAADTYRP-----------------------------AAIEQLKQLA 151 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cC--CceEEEecccCCh-----------------------------HHHHHHHHHH
Confidence 35667777776777777777766 56 6777776532111 1345556666
Q ss_pred HhcCCceEEEEEEeeCChH---HHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 88 RNFQNNIHVKRVVGCGDAK---DVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g~~~---~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
++.+ +++-.....-+|. ..=++.+++..+|+||+-+.||-....
T Consensus 152 ~q~~--v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide 198 (451)
T COG0541 152 EQVG--VPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDE 198 (451)
T ss_pred HHcC--CceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccH
Confidence 6666 6666552222564 555678999999999999999876654
No 80
>PRK10867 signal recognition particle protein; Provisional
Probab=72.84 E-value=48 Score=27.42 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=52.7
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
++...++--+.-+...|..+++..+ .++.++......+ . ..+++..+++
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~-------------------------a----a~eQL~~~a~ 153 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRP-------------------------A----AIEQLKTLGE 153 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccch-------------------------H----HHHHHHHHHh
Confidence 3444555556778888888776546 6787776533110 0 1122233344
Q ss_pred hcCCceEEEEEEeeCChHH---HHHHHHhhcCCCEEEEecCCCChh
Q 030672 89 NFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~~~~---~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
..+ +++.......+|.+ ..++.++..++|+|++-+.|+...
T Consensus 154 ~~g--v~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~ 197 (433)
T PRK10867 154 QIG--VPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHI 197 (433)
T ss_pred hcC--CeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCccc
Confidence 455 66544322335543 344566778899999999997654
No 81
>PLN00200 argininosuccinate synthase; Provisional
Probab=72.23 E-value=53 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=29.5
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+++|+|++++.-.|.-++.++.+ ..+ .+++.+++...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G--~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYG--CEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhC--CeEEEEEEECC
Confidence 36999999999999888888765 236 78999998654
No 82
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.80 E-value=22 Score=22.43 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEee-CChHH--HHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGC-GDAKD--VICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~-g~~~~--~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
....+++.++++| .+..++-.. |.... .|-...+ ++|+||+-+.--+.-.- ..+.+..++..+|++
T Consensus 11 ~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~~~-------~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 11 RERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHNAM-------WKVKKAAKKYGIPII 79 (97)
T ss_pred cHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChHHH-------HHHHHHHHHcCCcEE
Confidence 4566777777888 776666112 22233 4777788 99999998765443211 136788888999999
Q ss_pred hhh
Q 030672 156 FGD 158 (173)
Q Consensus 156 ~~~ 158 (173)
+.+
T Consensus 80 ~~~ 82 (97)
T PF10087_consen 80 YSR 82 (97)
T ss_pred EEC
Confidence 854
No 83
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=71.63 E-value=32 Score=24.19 Aligned_cols=35 Identities=9% Similarity=-0.027 Sum_probs=28.5
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
+++|++++...|.-++.++.+. + .+++++++....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g--~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----G--IEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----C--CeEEEEEEeCCC
Confidence 5899999999998888877763 6 799999997654
No 84
>PRK08185 hypothetical protein; Provisional
Probab=70.66 E-value=13 Score=28.91 Aligned_cols=60 Identities=8% Similarity=-0.167 Sum_probs=45.1
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-... ....++++.|++.+..+|+..+.+.....+ ..+......+.+++.+||-+
T Consensus 13 yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---~~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 13 FAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG---DNFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc---HHHHHHHHHHHHHCCCCEEE
Confidence 4444444444 778999999999999999998876543322 23677788899999999987
No 85
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=70.60 E-value=58 Score=26.91 Aligned_cols=90 Identities=9% Similarity=0.042 Sum_probs=51.8
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
++...++--+.-+...|..+....+ .++.++......+. ..+.+..++.
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~~-----------------------------a~~QL~~~a~ 152 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRPA-----------------------------AIEQLKVLGQ 152 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccchH-----------------------------HHHHHHHHHH
Confidence 4444556667778888888764456 67877765331100 1122233344
Q ss_pred hcCCceEEEEEEeeCChHH---HHHHHHhhcCCCEEEEecCCCChh
Q 030672 89 NFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~~~~---~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
..+ +++.......+|.+ ..++.++..++|+|++-+.|+...
T Consensus 153 ~~g--vp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~ 196 (428)
T TIGR00959 153 QVG--VPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQI 196 (428)
T ss_pred hcC--CceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcccc
Confidence 455 55544332235543 345566678899999999987654
No 86
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=70.46 E-value=15 Score=23.90 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC--CCeehhhHH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ--PSRLFGDLI 160 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~--~pvL~~~~~ 160 (173)
+...+++.| .++... ....+.+.+.+.+.+.++|+|.+........ . .-.....+.+..+ +++++|.+.
T Consensus 19 ~~~~l~~~G--~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~-~-----~~~~~~~~~~~~p~~~~ivvGG~~ 89 (125)
T cd02065 19 VAIALRDNG--FEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALSTTHM-E-----AMKLVIEALKELGIDIPVVVGGAH 89 (125)
T ss_pred HHHHHHHCC--CEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecchHhHH-H-----HHHHHHHHHHhcCCCCeEEEeCCc
Confidence 334456677 443333 1236778899999999999999987554332 1 2223456666665 899887643
No 87
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=70.46 E-value=54 Score=27.38 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
-.||.+|+.... ..+.+|++.++.... .+-........+-+..+.+.+.+.| +..
T Consensus 17 N~aL~~A~~~~~-----~~~~~vfi~~~~~~~----------------~~~~~~~~Fl~~sL~~L~~~L~~~g----i~L 71 (461)
T COG0415 17 NAALAAACQSGQ-----PVIIAVFILDPEQLG----------------HASPRHAAFLLQSLQALQQSLAELG----IPL 71 (461)
T ss_pred hHHHHHHHhcCC-----CceEEEEEechhhcc----------------ccCHHHHHHHHHHHHHHHHHHHHcC----Cce
Confidence 456777766533 234667776654332 0112344556667788888888888 677
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+..|++...+.+++++.+++.|+.....
T Consensus 72 ~v~~~~~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 72 LVREGDPEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred EEEeCCHHHHHHHHHHHhCcceEEeeeee
Confidence 88899999999999999998888877655
No 88
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=70.30 E-value=24 Score=29.11 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 65 IKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 65 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
..+.+....+...++++.+.+.+++.| ..+.+.--.....+.|.+.+++++...||.|.
T Consensus 38 ~~~ik~~~~~~ld~~l~~~~~~~~~~g--~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 38 VKEIKLKVLENLDFYLDQLKENVTQRG--GHVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 344555555677888888888888888 66665555557778899999999999999984
No 89
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=70.25 E-value=52 Score=26.89 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
..++|++++.+|-.+.+++++...|-+ .+ .+|.++-
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~~-~g--~~V~vv~ 40 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLRK-AG--ADVRVVM 40 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHHh-CC--CEEEEEE
Confidence 468999999999999999999988854 46 7877663
No 90
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=69.44 E-value=8.4 Score=26.10 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=32.4
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC-----CChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG-----YGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~-----~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
...+.|.+.+++++++.+|+|-+- .+... ...-..+.+|-.+.++||.+-|
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a----~~v~~f~~~L~~~~~~~v~~~D 90 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLT----ERAQKFANRLEGRFGVPVVLWD 90 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHH----HHHHHHHHHHHHHhCCCEEEEc
Confidence 447888999999999999999322 22211 1233345566555678887743
No 91
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=69.04 E-value=17 Score=28.15 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=44.0
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+.....+. ..+......+.+++.+||-+
T Consensus 18 yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~--~~~~~~~~~~A~~~~VPVal 79 (284)
T PRK12857 18 YAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGI--EYISAMVRTAAEKASVPVAL 79 (284)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 3444444445 7789999999999999999987664322111 23667778889999999987
No 92
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=69.02 E-value=58 Score=28.05 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=30.1
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.-..+..|....+-+++|++.++|+||...|..
T Consensus 128 ~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 128 AQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCC
Confidence 67888888897788888999999999999998753
No 93
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=68.71 E-value=26 Score=24.22 Aligned_cols=91 Identities=14% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhcCC-ceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-e--cCCCChhhhhhhhcccchHHHHh
Q 030672 74 ESVNSVMNRAEAVYRNFQN-NIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-G--SHGYGFIKRYKQLILAALSFQFL 147 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G--~~~~~~~~~~~~~~~gs~~~~ll 147 (173)
.....+++.+.+.+.+.|. ...++...+-| ...-.+-..++..++|-+|. | .+|.+.... ..-.++++-++
T Consensus 16 ~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~---~v~~~v~~gl~ 92 (144)
T PF00885_consen 16 EITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFE---YVANAVSRGLM 92 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHH---HHHHHHHHHHH
Confidence 4556778888888888871 11566666666 55666667777777887765 7 477766555 33555555443
Q ss_pred ---cCCCCCeehh---hHHHHHHhhc
Q 030672 148 ---PNSQPSRLFG---DLILFQILQG 167 (173)
Q Consensus 148 ---~~~~~pvL~~---~~~~~~~~~~ 167 (173)
-+..+||.+| .....|-+.+
T Consensus 93 ~lsl~~~~PV~~gvlt~~~~eqa~~R 118 (144)
T PF00885_consen 93 DLSLEYGIPVIFGVLTPDTEEQALER 118 (144)
T ss_dssp HHHHHHTSEEEEEEEEESSHHHHHHH
T ss_pred HHhccCCccEEEEecCCCCHHHHHHH
Confidence 3468888774 3344444444
No 94
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.15 E-value=60 Score=25.91 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHH---HHHhhcCCCEEEEecCCCChhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVIC---GTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~---~~a~~~~~dllV~G~~~~~~~~ 132 (173)
..+++..+.++.| +++.... .| ||+..+. ++|+..++|+|++-+.||-...
T Consensus 182 AiEQL~~w~er~g--v~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 182 AIEQLEVWGERLG--VPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HHHHHHHHHHHhC--CeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence 3444555555677 8877765 56 8876665 4688899999999998875543
No 95
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=67.55 E-value=72 Score=26.61 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
.-.||..|+..+ + .+|..|+|.++....... ..........+.+..+.+.+++.| .++.
T Consensus 16 DN~aL~~A~~~~---~--~~vlpvyv~dp~~~~~~~--------------~~~~r~~Fl~esL~~L~~~L~~~g--~~L~ 74 (472)
T PRK10674 16 DNLALAAACRDP---S--ARVLALFIATPAQWAAHD--------------MAPRQAAFINAQLNALQIALAEKG--IPLL 74 (472)
T ss_pred hHHHHHHHHhCC---C--CCEEEEEEECchhhccCC--------------CCHHHHHHHHHHHHHHHHHHHHcC--CceE
Confidence 345777776432 2 369999998874321100 012233456667777777888888 5553
Q ss_pred EEEe--eCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 98 RVVG--CGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 98 ~~~~--~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.... .|++.+.+.+.+++.+++-|+.-...
T Consensus 75 v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~~ 106 (472)
T PRK10674 75 FHEVDDFAASVEWLKQFCQQHQVTHLFYNYQY 106 (472)
T ss_pred EEecCCcCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 3332 36899999999999999999987543
No 96
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.45 E-value=38 Score=23.95 Aligned_cols=80 Identities=9% Similarity=0.119 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEe--CCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVK--PPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 96 (173)
..-+..++++|+..+ ++...++.. ....... .+...+...+.++.+.+.++++| +.+
T Consensus 70 ~~~~~~~i~~a~~lg--~~~i~~~~g~~~~~~~~~-----------------~~~~~~~~~~~l~~l~~~a~~~g--v~i 128 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLG--AKYIVVHSGRYPSGPEDD-----------------TEENWERLAENLRELAEIAEEYG--VRI 128 (213)
T ss_dssp HHHHHHHHHHHHHHT--BSEEEEECTTESSSTTSS-----------------HHHHHHHHHHHHHHHHHHHHHHT--SEE
T ss_pred HHHHHHHHHHHHHhC--CCceeecCcccccccCCC-----------------HHHHHHHHHHHHHHHHhhhhhhc--ceE
Confidence 567777888888888 898888854 1111110 12344556667888888888888 777
Q ss_pred EEEEeeCCh---H---HHHHHHHhhcCCC
Q 030672 97 KRVVGCGDA---K---DVICGTVEKLEAD 119 (173)
Q Consensus 97 ~~~~~~g~~---~---~~I~~~a~~~~~d 119 (173)
..+...+.. . +.+.+.+++.+.+
T Consensus 129 ~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 129 ALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp EEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred EEecccCccccchhhHHHHHHHHhhcCCC
Confidence 777666533 2 7888888876654
No 97
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.30 E-value=14 Score=26.62 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=29.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
++||++++.+|-.+.++.++...+.+ .+ .++.++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g--~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RG--YQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 58999999999999999999888855 46 7877653
No 98
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.26 E-value=20 Score=27.82 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=44.2
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+.-+.+.....+. -++......+.+++.+||-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~--~~~~~~~~~~a~~~~VPVal 79 (284)
T PRK12737 18 YAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGT--DYIVAIAEVAARKYNIPLAL 79 (284)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 4455554455 7799999999999999999877654321110 23667788899999999987
No 99
>PRK06801 hypothetical protein; Provisional
Probab=67.18 E-value=21 Score=27.70 Aligned_cols=61 Identities=2% Similarity=-0.214 Sum_probs=45.6
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-... ....+|++.|++.+..+|+..+.+.....+. ..+......+..++.+||-+
T Consensus 18 yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~--~~~~~~~~~~a~~~~vpV~l 79 (286)
T PRK06801 18 YALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISL--ESLVEAVKFEAARHDIPVVL 79 (286)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 4444444445 7789999999999999999987765432221 34778888999999999987
No 100
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=67.11 E-value=19 Score=21.73 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=28.2
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLL 41 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l 41 (173)
.++|.+++|.++...++.....+.....+ ..+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g--~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLG--LNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCC--CeEEEE
Confidence 48999999999999988888888777767 666544
No 101
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=66.13 E-value=30 Score=28.02 Aligned_cols=30 Identities=3% Similarity=0.071 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
...+++.+++|+++|++.+. .+|+++|=..
T Consensus 183 r~~~eRIar~AF~~A~~r~~-k~Vt~v~KaN 212 (372)
T PLN00118 183 RQASLRVAEYAFHYAKTHGR-KRVSAIHKAN 212 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CeEEEEECCc
Confidence 34578999999999988852 4588876544
No 102
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=65.98 E-value=24 Score=27.35 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=44.8
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+.-...+. .+++.......+++.+||-+
T Consensus 18 yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~--~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 18 YGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPL--HLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCCh--HHHHHHHHHHHHHCCCCEEE
Confidence 4455555555 7799999999999999999987654322111 24667778889999999987
No 103
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=65.23 E-value=24 Score=27.39 Aligned_cols=61 Identities=10% Similarity=0.009 Sum_probs=44.5
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+=..-..+ ....++++.|++.+..+|+..+.+.-...+. ..+......+.+++.+||-+
T Consensus 16 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~--~~~~~~~~~~a~~~~VPVal 77 (282)
T TIGR01858 16 YAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGT--EYIVALCSAASTTYNMPLAL 77 (282)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 4444444445 7799999999999999999987764322111 23667888999999999987
No 104
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=64.97 E-value=72 Score=26.79 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=30.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.++|++.+.+|-.+.+++++...|.+ .| .+|+++-
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k-~G--~~V~Vvm 104 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKE-RG--AHVRCVL 104 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHh-Cc--CEEEEEE
Confidence 58999999999999999999999965 46 7877764
No 105
>PLN02828 formyltetrahydrofolate deformylase
Probab=64.79 E-value=63 Score=24.91 Aligned_cols=88 Identities=10% Similarity=0.043 Sum_probs=55.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
..+||.|-++++..+..++-++..- ...+ ++|.+|-..++.+.. ..+
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~-g~l~--~eI~~ViSn~~~~~~------------------------------a~~ 115 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQD-GRLP--VDITCVISNHERGPN------------------------------THV 115 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhc-CCCC--ceEEEEEeCCCCCCC------------------------------chH
Confidence 5679999999999999888888765 3344 677666443322110 022
Q ss_pred HHHHHhcCCceEEEEEEee--CChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~--g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++...... ....+.+++..+ ++|++|+..-.+
T Consensus 116 ~~~A~~~g--IP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgym~ 158 (268)
T PLN02828 116 MRFLERHG--IPYHYLPTTKENKREDEILELVK--GTDFLVLARYMQ 158 (268)
T ss_pred HHHHHHcC--CCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeeehH
Confidence 33445667 776644333 222356777776 699999986543
No 106
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=64.75 E-value=34 Score=24.22 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEe---eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVG---CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~---~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
.++.+.+.+++..|++.+..... .....+.|++.+.+.++|+|++|-.... -+.+ ..+..++.+.+|.
T Consensus 60 ~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk-QE~~--------~~~~~~~l~~~v~ 130 (172)
T PF03808_consen 60 VLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPK-QERW--------IARHRQRLPAGVI 130 (172)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH-HHHH--------HHHHHHHCCCCEE
Confidence 34444444443332354443221 2356899999999999999999964432 2232 3555566666666
Q ss_pred h
Q 030672 156 F 156 (173)
Q Consensus 156 ~ 156 (173)
+
T Consensus 131 i 131 (172)
T PF03808_consen 131 I 131 (172)
T ss_pred E
Confidence 6
No 107
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.45 E-value=22 Score=27.61 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=43.9
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+.-+.+.-...+. -.+......+.+++.+||-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~--~~~~~~~~~~A~~~~VPV~l 79 (284)
T PRK09195 18 YAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGT--EYLLAIVSAAAKQYHHPLAL 79 (284)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 3344444444 7899999999999999999987654222110 13667788899999999987
No 108
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=64.33 E-value=12 Score=29.82 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=49.3
Q ss_pred eEEEEEEeeCC---------hHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHH
Q 030672 94 IHVKRVVGCGD---------AKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQ 163 (173)
Q Consensus 94 v~~~~~~~~g~---------~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~ 163 (173)
.++...+..|| ..+.|++++++.++|++|.|.-=..+.-+ ..-|.++..+-.+..+|++-+=+.+..
T Consensus 48 ~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG---~acg~v~~aV~e~~~IP~vtaM~~ENp 123 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYG---VACGEVAKAVQEKLGIPVVTAMYEENP 123 (349)
T ss_pred CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHH---HHHHHHHHHHHHhhCCCEEEEecccCh
Confidence 45666666663 35788899999999999999643333333 347888889999999999987665543
No 109
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=64.16 E-value=41 Score=27.41 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..++||+++.+|-.+.++++.+..|-+ .| +++.++-.-.
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L~~-~g--a~v~vvmt~~ 41 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLLRR-SG--AEVRVVMTES 41 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHHhh-CC--CeeEEEcchh
Confidence 346999999999999999999988844 56 7888875543
No 110
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=63.80 E-value=35 Score=27.38 Aligned_cols=28 Identities=4% Similarity=-0.147 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|.+.+ .+|+++|=..
T Consensus 163 ~~~eRI~r~AF~~A~~r~--~~Vt~v~KaN 190 (349)
T TIGR00169 163 PEIERIARVAFEMARKRR--KKVTSVDKAN 190 (349)
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEECCc
Confidence 457899999999999887 6777776544
No 111
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=63.47 E-value=27 Score=27.15 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=43.5
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+.-.. .. ..+.+....+.+++.+||-+
T Consensus 18 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~a~~~~VPVal 79 (286)
T PRK12738 18 YAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIAL---EEIYALCSAYSTTYNMPLAL 79 (286)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCH---HHHHHHHHHHHHHCCCCEEE
Confidence 3344444444 7799999999999999999877654221 11 23667788889999999987
No 112
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=63.45 E-value=60 Score=24.25 Aligned_cols=129 Identities=12% Similarity=0.179 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASES--------VNSVMNRAEAVYRN 89 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~ 89 (173)
-...+...+.-+...| +.++++-..-..+....... ...+......+-...-.. ..+..+...+..+.
T Consensus 72 v~~~lq~~i~~le~~G--~d~illlCTG~F~~l~~~~~--lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~ 147 (221)
T PF07302_consen 72 VEPRLQACIAQLEAQG--YDVILLLCTGEFPGLTARNP--LLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQP 147 (221)
T ss_pred HHHHHHHHHHHHHHCC--CCEEEEeccCCCCCCCCCcc--eeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHh
Confidence 3456666777777777 77777766554443322211 122222222222111110 01122222233333
Q ss_pred cCCceEEEEEEee---CChHHHHHHHH---hhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHH
Q 030672 90 FQNNIHVKRVVGC---GDAKDVICGTV---EKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQ 163 (173)
Q Consensus 90 ~~~~v~~~~~~~~---g~~~~~I~~~a---~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~ 163 (173)
.+ .++.+.... |+ .+.+.+.+ ++.++|+|||---|++.-.+ +.+-+.+.+|||++....+-
T Consensus 148 l~--~~~~~a~asPy~~~-~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r----------~~~~~~~g~PVlLsr~lvAr 214 (221)
T PF07302_consen 148 LG--NPVVVAAASPYEGD-EEELAAAARELAEQGADLIVLDCMGYTQEMR----------DIVQRALGKPVLLSRTLVAR 214 (221)
T ss_pred cC--CCeEEEEeCCCCCC-HHHHHHHHHHHHhcCCCEEEEECCCCCHHHH----------HHHHHHhCCCEEeHHHHHHH
Confidence 43 344444433 33 45555544 46789999999988887665 66777899999998876543
No 113
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=63.26 E-value=67 Score=24.67 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=57.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
..+++|+.++.-.|.-.+..|.+-+ | .++.++.|..+... .+.++.+.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~l---G--~~v~AvTv~sP~~p---------------------------~~e~e~A~ 64 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEAL---G--DNVVAVTVDSPYIP---------------------------RREIEEAK 64 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHh---c--cceEEEEEecCCCC---------------------------hhhhhHHH
Confidence 4599999999888876666665543 4 57788877664321 11344555
Q ss_pred HHHHhcCCceEEEEEEee--C----------------ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 85 AVYRNFQNNIHVKRVVGC--G----------------DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~--g----------------~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+++.| ++-+..-.. + ...+.|.+.+.+.++|.|+=|+..
T Consensus 65 ~~A~~iG--i~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 65 NIAKEIG--IRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred HHHHHhC--CcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 5555555 332222211 1 235788999999999999999753
No 114
>PRK09222 isocitrate dehydrogenase; Validated
Probab=63.08 E-value=36 Score=28.58 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
+.+++.++||+++|++.+. .+|+++|=..
T Consensus 149 ~~~eRI~r~AFe~A~~r~r-kkVt~v~KaN 177 (482)
T PRK09222 149 PGSEKIIRYAFEYARANGR-KKVTCLTKDN 177 (482)
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECCC
Confidence 4588999999999998863 4688876544
No 115
>PRK10481 hypothetical protein; Provisional
Probab=62.61 E-value=62 Score=24.22 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=35.5
Q ss_pred hHHHHHHHHh---hcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHH
Q 030672 105 AKDVICGTVE---KLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILF 162 (173)
Q Consensus 105 ~~~~I~~~a~---~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~ 162 (173)
..+.+.+.++ +.++|+||++--|.+. . ....+-+...+||+.+..-..
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-~---------~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQ-R---------HRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCH-H---------HHHHHHHHHCcCEEcHHHHHH
Confidence 3456666666 6799999999888764 2 246778889999998765544
No 116
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=62.19 E-value=13 Score=22.52 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=22.6
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVL 40 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~ 40 (173)
.++|.+++|.+.....+..+..+.....+ .+++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~g--i~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLG--IRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG----------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhc--ccccc
Confidence 48899999999999999999888666655 55543
No 117
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=61.70 E-value=12 Score=25.51 Aligned_cols=59 Identities=8% Similarity=0.006 Sum_probs=38.2
Q ss_pred EEEEEEee--CChHHHHHHHHhhcCCCEEEEecCCCC-----hhhhhhhhcccchHHHHhcCC-CCCeehh
Q 030672 95 HVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHGYG-----FIKRYKQLILAALSFQFLPNS-QPSRLFG 157 (173)
Q Consensus 95 ~~~~~~~~--g~~~~~I~~~a~~~~~dllV~G~~~~~-----~~~~~~~~~~gs~~~~ll~~~-~~pvL~~ 157 (173)
++.+.... +...+.|.+.+++++++.+|+|-.-.. .... ..-..+..|-... .+||.+-
T Consensus 27 pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~----~v~~f~~~L~~~~~~ipV~~~ 93 (135)
T PF03652_consen 27 PLETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQAR----RVRKFAEELKKRFPGIPVILV 93 (135)
T ss_dssp EEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHH----HHHHHHHHHHHHH-TSEEEEE
T ss_pred eeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHH----HHHHHHHHHHHhcCCCcEEEE
Confidence 34444444 477899999999999999999964321 1111 2333455666665 8888764
No 118
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.60 E-value=91 Score=25.71 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHH---HHHHHHhhcCCCEEEEecCCCChhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~---~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
+++++.+.+.+.+ +++-..-.+-+|+. +=++..+++++|+||+-++||..-.
T Consensus 144 AfDQLkqnA~k~~--iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe 198 (483)
T KOG0780|consen 144 AFDQLKQNATKAR--VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQE 198 (483)
T ss_pred hHHHHHHHhHhhC--CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhh
Confidence 3455555555565 77666544445543 3445677899999999998876543
No 119
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=61.20 E-value=79 Score=26.63 Aligned_cols=47 Identities=15% Similarity=0.040 Sum_probs=32.6
Q ss_pred ChHHHHHHHHhhc----CCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 104 DAKDVICGTVEKL----EADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 104 ~~~~~I~~~a~~~----~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+..+.|.+..++. ++|.||+-.+..+.-.- ...+++...+|||+-..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~---------~i~~~~~l~~PvL~~~~ 99 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSPAKM---------WIAGLTALQKPLLHLHT 99 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCchHHH---------HHHHHHHcCCCEEEEcc
Confidence 3355666666664 59999998877765544 34557888999998443
No 120
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=61.12 E-value=61 Score=23.51 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=62.7
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
|+++++++...|.-++.++.+. | .++..+++..+....... . ...-++.++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G--~~v~~l~~~~~~~~~~~~------~---------------h~~~~e~~~~~ 53 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----G--HEVVALLNLTPEEGSSMM------Y---------------HTVNHELLELQ 53 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----C--CEEEEEEEEecCCCCccc------c---------------cccCHHHHHHH
Confidence 5789999999999888888873 5 677777765433211000 0 00123445556
Q ss_pred HHhcCCceEEEEEEeeC---ChHHH----HHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 87 YRNFQNNIHVKRVVGCG---DAKDV----ICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g---~~~~~----I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
++..| ++.......+ +..+. +.+..++ +++.||-|..-....+. ..-+....+=-.+-.|++
T Consensus 54 A~~lg--ipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd~~~~----~~e~~~~~~gl~~~~PLW 122 (194)
T cd01994 54 AEAMG--IPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILSEYQRT----RVERVCERLGLEPLAPLW 122 (194)
T ss_pred HHHcC--CcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccccHHHHH----HHHHHHHHcCCEEEeccc
Confidence 66677 6655443322 22233 3333334 79999999876443332 233444444333344443
No 121
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=60.63 E-value=33 Score=28.72 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.++||+++|++.+. .+|+++|=..
T Consensus 145 ~g~eRI~r~AFe~A~~r~r-kkVT~v~KaN 173 (473)
T TIGR02924 145 SGSEKICRYAFEYARKHNR-KKVTCLTKDN 173 (473)
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECCc
Confidence 4588999999999998863 4688886544
No 122
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.57 E-value=51 Score=23.60 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC--Ch--HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG--DA--KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g--~~--~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
.++.+.+.+++.-|++.+... .| ++ .++|++.+.+.++|+|++|-.... -+. + ..+...+.+.+|
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~Pk-QE~----~----~~~~~~~~~~~v 128 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGCPK-QEI----W----MRNHRHLKPDAV 128 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCCcH-hHH----H----HHHhHHhCCCcE
Confidence 334444444332224655544 33 33 477899999999999999954322 222 1 134444555666
Q ss_pred ehh
Q 030672 155 LFG 157 (173)
Q Consensus 155 L~~ 157 (173)
+++
T Consensus 129 ~~g 131 (177)
T TIGR00696 129 MIG 131 (177)
T ss_pred EEE
Confidence 653
No 123
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=60.19 E-value=41 Score=26.79 Aligned_cols=29 Identities=3% Similarity=0.019 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
+.+++.+++|+++|++.+. .+|+++|=..
T Consensus 145 ~~~eRi~r~Af~~A~~r~~-k~Vt~v~KaN 173 (333)
T TIGR00175 145 DKSERIARYAFEYARKNGR-KKVTAVHKAN 173 (333)
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECCc
Confidence 4578899999999988852 4588876544
No 124
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=59.83 E-value=91 Score=25.14 Aligned_cols=29 Identities=7% Similarity=-0.125 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+.+++.+++|+++|.+.+ .+|+++|=..-
T Consensus 166 ~~~~Ri~r~Af~~A~~r~--~~Vt~v~KaNv 194 (358)
T PRK00772 166 EEIERIARVAFELARKRR--KKVTSVDKANV 194 (358)
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEECccc
Confidence 457899999999998887 68888776443
No 125
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=59.77 E-value=69 Score=25.57 Aligned_cols=30 Identities=0% Similarity=-0.043 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.+.+++.+++|+++|++.+. .+|+++|=..
T Consensus 146 r~~~eRi~r~Af~~A~~r~~-~~Vt~v~KaN 175 (334)
T PRK08997 146 RKGAERIVRFAYELARKEGR-KKVTAVHKAN 175 (334)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CeEEEEeCCC
Confidence 34578999999999988853 4688876544
No 126
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=59.40 E-value=20 Score=23.96 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=26.3
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEE
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLL 41 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l 41 (173)
|||++++.++-...++.++...+.+. + .++.++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g--~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-G--WEVRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-T--SEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-C--CEEEEE
Confidence 68999999999999999988888765 6 787665
No 127
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=59.31 E-value=42 Score=26.21 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEec
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~ 125 (173)
...+.+..+.+.+++.+ .+.+.+..... -+..+++.+...++|.||.+.
T Consensus 17 ~~~~~~~~~~~~l~~~g--~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~G 66 (301)
T COG1597 17 KAKKLLREVEELLEEAG--HELSVRVTEEAGDAIEIAREAAVEGYDTVIAAG 66 (301)
T ss_pred chhhHHHHHHHHHHhcC--CeEEEEEeecCccHHHHHHHHHhcCCCEEEEec
Confidence 34566777777888888 88887777764 677777777777999999874
No 128
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=58.95 E-value=95 Score=25.03 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=28.7
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.-.++|+++++.-.|.-++.++.+ .| .+++++|+..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG--~~V~av~~~~ 206 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RG--CRVVAVHFFN 206 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cC--CeEEEEEEeC
Confidence 457999999998888877766644 37 8999999974
No 129
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=58.85 E-value=16 Score=28.01 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC------CChhhhhhhhcccc-------hHH
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG------YGFIKRYKQLILAA-------LSF 144 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~------~~~~~~~~~~~~gs-------~~~ 144 (173)
+.++++++..++.. ..+..|--.--..+++++-++|+|++-++| ++.+...+ . +|+ .+.
T Consensus 2 eil~~l~~~i~~~~------pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~Slagll-p-ygnaN~iv~em~~ 73 (268)
T PF09370_consen 2 EILDRLRAQIKAGK------PIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLL-P-YGNANEIVMEMAR 73 (268)
T ss_dssp HHHHHHHHHHHTT--------EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGB-T-EEEHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCC------ceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhh-c-ccCHhHHHHHHHH
Confidence 46777777766543 122222222334577888899999997644 44444422 1 222 246
Q ss_pred HHhcCCC-CCeehh
Q 030672 145 QFLPNSQ-PSRLFG 157 (173)
Q Consensus 145 ~ll~~~~-~pvL~~ 157 (173)
.++...+ +||++|
T Consensus 74 eiLp~v~~tPViaG 87 (268)
T PF09370_consen 74 EILPVVKDTPVIAG 87 (268)
T ss_dssp HHGGG-SSS-EEEE
T ss_pred hhhhhccCCCEEEE
Confidence 6666666 899884
No 130
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=58.76 E-value=45 Score=21.31 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEee-----------C-ChHHHHHHHHhhcCCCEEEEecC
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGC-----------G-DAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~-----------g-~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+..++.+.++++..| ..+...+.. | --.++|.+.++.+++|+||+-..
T Consensus 6 ~~~~l~El~~L~~t~g--~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 6 FEESLEELEELAETAG--YEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHHHHHHCC--CeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 3456777888888777 443322221 3 23689999999999999999854
No 131
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=58.30 E-value=31 Score=25.25 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCChHHHH-HHHHHHhhcCCCCCCCeEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMH-ALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~-al~~A~~la~~~~~~~~l~~l~ 42 (173)
|.-..+||++++.+|-.+.+ +.+.+-.+.+ .| .+|+++-
T Consensus 1 ~~l~~k~IllgVTGsiaa~k~a~~lir~L~k-~G--~~V~vv~ 40 (196)
T PRK08305 1 MSLKGKRIGFGLTGSHCTYDEVMPEIEKLVD-EG--AEVTPIV 40 (196)
T ss_pred CCCCCCEEEEEEcCHHHHHHHHHHHHHHHHh-Cc--CEEEEEE
Confidence 54567899999999999999 6888888754 46 7877664
No 132
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.21 E-value=30 Score=26.75 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=44.0
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-... ....++++.|++.+..+|+--+.+.....+ + ..+......+.+++.+||-+
T Consensus 13 yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-~-~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 13 YAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAG-L-ELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-H-HHHHHHHHHHHHHCCCCEEE
Confidence 4444444444 779999999999999999987765432221 0 24777888889999999987
No 133
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=58.19 E-value=83 Score=24.15 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 030672 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (173)
Q Consensus 17 ~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 96 (173)
..+.++++|..+.. .+ .++...+.+++.+....+.. ...+-+..+++.+++.| +++
T Consensus 39 ~~~~~~~~A~~lk~-~g--~~~~r~~~~kpRTs~~s~~G-------------------~g~~gl~~l~~~~~~~G--l~~ 94 (266)
T PRK13398 39 SEEQMVKVAEKLKE-LG--VHMLRGGAFKPRTSPYSFQG-------------------LGEEGLKILKEVGDKYN--LPV 94 (266)
T ss_pred CHHHHHHHHHHHHH-cC--CCEEEEeeecCCCCCCccCC-------------------cHHHHHHHHHHHHHHcC--CCE
Confidence 34668888888865 56 78888888885544222110 11445666677778888 888
Q ss_pred EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 97 KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 97 ~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
-+.+..-...+.+.+ . +|++-+|++.-....- -.. +.+...||++
T Consensus 95 ~te~~d~~~~~~l~~----~-vd~~kIga~~~~n~~L---------L~~-~a~~gkPV~l 139 (266)
T PRK13398 95 VTEVMDTRDVEEVAD----Y-ADMLQIGSRNMQNFEL---------LKE-VGKTKKPILL 139 (266)
T ss_pred EEeeCChhhHHHHHH----h-CCEEEECcccccCHHH---------HHH-HhcCCCcEEE
Confidence 888877655555543 3 6899999876543221 122 2456777777
No 134
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=58.06 E-value=47 Score=24.72 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh-hh
Q 030672 107 DVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF-GD 158 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~-~~ 158 (173)
..+.+..++.++|.||+++...... .-+.++.++..+.+|.++ ||
T Consensus 50 aav~~~~e~~~pDfvi~isPNpaaP-------GP~kARE~l~~s~~PaiiigD 95 (277)
T COG1927 50 AAVTEMLEEFNPDFVIYISPNPAAP-------GPKKAREILSDSDVPAIIIGD 95 (277)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC-------CchHHHHHHhhcCCCEEEecC
Confidence 5566789999999999998765432 223578899999999877 44
No 135
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=57.75 E-value=96 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.9
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
++|+|++++.-.|.-++..+.+ .+ .++..+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G--~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QG--YEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cC--CcEEEEEEeC
Confidence 4899999999888877655543 36 6888888864
No 136
>PRK05406 LamB/YcsF family protein; Provisional
Probab=57.21 E-value=84 Score=23.91 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 030672 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (173)
Q Consensus 14 ~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (173)
+.......++.++.+|+..+ ..| -+.+..+....++--....+++. ........+..+...++..|
T Consensus 38 ~HAGDp~~M~~tv~lA~~~g--V~I---GAHPgypD~~gFGRR~m~~s~~e-------l~~~v~yQigAL~~~a~~~g-- 103 (246)
T PRK05406 38 FHAGDPAVMRRTVRLAKENG--VAI---GAHPGYPDLEGFGRRNMDLSPEE-------LYALVLYQIGALQAIARAAG-- 103 (246)
T ss_pred ccCCCHHHHHHHHHHHHHcC--CeE---ccCCCCCccCCCCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHcC--
Confidence 33345678889999999888 333 23333333333332222233332 22333444556666777777
Q ss_pred eEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 94 IHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 94 v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+++.+--.| ..++.|++.++..+.+|++++..+
T Consensus 104 ~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~ 147 (246)
T PRK05406 104 GRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAG 147 (246)
T ss_pred CeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 6666554432 447888899999999999999655
No 137
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=57.18 E-value=76 Score=23.38 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=48.6
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
||.|-++++-....++-.+++- ...+ +++.++ +...+.. .+.+.
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~-~~l~--~~i~~v--isn~~~~-------------------------------~~~~~ 44 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLD-GRVN--GDVVVV--VTNKPGC-------------------------------GGAEY 44 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHc-CCCC--eEEEEE--EEeCCCC-------------------------------hHHHH
Confidence 4778888888888887777653 2233 455444 3322111 01234
Q ss_pred HHhcCCceEEEEEEeeC-----ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 87 YRNFQNNIHVKRVVGCG-----DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g-----~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+++.| +++....... .-.+++.+..++.++|++|+..-.
T Consensus 45 A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 45 ARENG--IPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred HHHhC--CCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcc
Confidence 44566 6654332221 114678888999999999996543
No 138
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.16 E-value=33 Score=26.68 Aligned_cols=61 Identities=5% Similarity=-0.003 Sum_probs=43.6
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+.-...+. ..+......+.+++.+||-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~--~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 18 VLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGY--DYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCH--HHHHHHHHHHHHHCCCCEEE
Confidence 4444444455 6789999999999999999987654222111 23666778888999999877
No 139
>PRK02929 L-arabinose isomerase; Provisional
Probab=56.93 E-value=93 Score=26.34 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=34.0
Q ss_pred ChHHHHHHHHhhcC----CCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 104 DAKDVICGTVEKLE----ADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 104 ~~~~~I~~~a~~~~----~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+..+.|.+.+++.+ +|.||+-.+..+.-+- ...+++...+|||+-..
T Consensus 55 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~---------~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 55 TTPDEITAVCREANYDDNCAGVITWMHTFSPAKM---------WIRGLSALQKPLLHLHT 105 (499)
T ss_pred CCHHHHHHHHHHccccCCCcEEEEccCCCchHHH---------HHHHHHHcCCCEEEEec
Confidence 44566667777766 9999998877765544 34558888999998443
No 140
>PRK12569 hypothetical protein; Provisional
Probab=56.49 E-value=87 Score=23.83 Aligned_cols=99 Identities=9% Similarity=0.078 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
.......++.++++|+..+ ..| . +.+..+....++--....+++.. .......+..+...++..| .
T Consensus 42 HAGDp~~M~~tv~lA~~~~--V~I-G--AHPsyPD~~gFGRr~m~~s~~el-------~~~v~yQigaL~~~~~~~g--~ 107 (245)
T PRK12569 42 HAGDPNIMRRTVELAKAHG--VGI-G--AHPGFRDLVGFGRRHINASPQEL-------VNDVLYQLGALREFARAHG--V 107 (245)
T ss_pred cCCCHHHHHHHHHHHHHcC--CEe-c--cCCCCCcCCCCCCCCCCCCHHHH-------HHHHHHHHHHHHHHHHHcC--C
Confidence 3345678889999999888 333 2 33333333333322222333322 2333444556666777777 6
Q ss_pred EEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 95 HVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 95 ~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+++.+--.| ..++.|++.+++.+.+|++++..+
T Consensus 108 ~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 108 RLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred eeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 666554432 447889999999999999998655
No 141
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=56.27 E-value=1.5e+02 Score=26.39 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=64.3
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCC---------CCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDT---------NNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASE 74 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~---------~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (173)
.++.|=|+|.++.....|+..|..+.+.... ..++.+.|..++.....+.. +. ...
T Consensus 576 ~~~~v~vavEGNSsQdsaVaIa~~i~~~~~~~~~~~~~~~~~~~~F~H~~~~~~~v~~P~---yl------------l~~ 640 (738)
T PHA03368 576 RFRSVRVAVEGNSSQDSAVAIATRIARELASLRASGVAPMPPSLLFYHCRPPGSAVAYPF---FL------------LQK 640 (738)
T ss_pred cccEEEEEEecCccHHHHHHHHHHHHHHHhhhhhcccCCCCceeEEEeeCCCCCceeCcc---hh------------hcc
Confidence 4678889999988888888888877665520 03778888877653322111 00 111
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEE------EeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRV------VGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~------~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+-....+.+...+..-. +...-. -+.-||.+-+++..+ ++.-++.|..+
T Consensus 641 ~K~~Afe~Fi~~fNsg~--i~aSQ~lvS~Ti~l~~DPv~YL~~Qi~--ni~~~~~~~~~ 695 (738)
T PHA03368 641 QKTPAFDHFIKRFNSGR--VMASQELVSNTVRLQTDPVEYLTKQLK--NLTEVVTGGSD 695 (738)
T ss_pred chhHHHHHHHHHhcCCc--eEeeeeeeeeeeeeccChHHHHHHHHh--hcEEEecCCCC
Confidence 22334555555554333 333322 223499999999999 99999996533
No 142
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=56.25 E-value=77 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=24.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
+-.|+|+.+++.-.|.=|. .+..+.| .+|+.||...++
T Consensus 2 t~gk~l~LlSGGiDSpVAa----~lm~krG--~~V~~l~f~~~~ 39 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAA----WLMMKRG--CEVIALHFDSPP 39 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHH----HHHHCBT---EEEEEEEE-TT
T ss_pred CCceEEEEecCCccHHHHH----HHHHHCC--CEEEEEEEECCC
Confidence 3468899998877776443 4444558 999999998544
No 143
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=56.16 E-value=41 Score=27.68 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=47.7
Q ss_pred eEEEEEEeeCCh---------HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHH
Q 030672 94 IHVKRVVGCGDA---------KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLIL 161 (173)
Q Consensus 94 v~~~~~~~~g~~---------~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~ 161 (173)
.++..-+..||- .+.|++++++.++|++|.|.-=..+.-+ ..=|.++..+-.+..+|++-+=+.+
T Consensus 44 ~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG---~acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 44 AEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYG---MAAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred CEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH---HHHHHHHHHHHHhhCCCeEEEeccc
Confidence 566666666633 3678999999999999999643333333 3477788888999999999876554
No 144
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=55.92 E-value=67 Score=25.58 Aligned_cols=29 Identities=3% Similarity=-0.032 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhhcCCC----CCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSP----DTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~----~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|++. +. .+|+++|=..
T Consensus 140 ~~~~Ri~r~Af~~A~~r~~~~~~-k~Vt~v~KaN 172 (330)
T PRK14025 140 KASERIFRFAFEMAKRRKKMGKE-GKVTCAHKAN 172 (330)
T ss_pred HHHHHHHHHHHHHHHhccccCCC-CeEEEEECCC
Confidence 45789999999999887 32 4688776544
No 145
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=55.49 E-value=45 Score=26.72 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=44.2
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC-CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ-PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~-~pvL~ 156 (173)
.-+-..-... ....+|++.|++.+..+|+..+.+.....+. .++......+..+++ +||-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~--~~~~~~v~~~ae~~~~VPVaL 80 (347)
T PRK13399 18 YGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGD--AMLRHMVLAAAEMYPDIPICL 80 (347)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCH--HHHHHHHHHHHHhcCCCcEEE
Confidence 4455554455 7799999999999999999988764332221 346677788888885 89877
No 146
>PRK08576 hypothetical protein; Provisional
Probab=54.97 E-value=1.2e+02 Score=25.15 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=24.9
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
+++|++++...|.-++..+.... + .+.++++..
T Consensus 236 rVvVafSGGKDStvLL~La~k~~---~---~V~aV~iDT 268 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAF---G---DVTAVYVDT 268 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhC---C---CCEEEEeCC
Confidence 89999999999998887776642 2 367777643
No 147
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=54.87 E-value=85 Score=26.42 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=45.4
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEe-cCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHHHhh
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG-SHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQILQ 166 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G-~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~~~~ 166 (173)
.+...+..++....|.--+.+-++|+|++. ..|. -|......++++.+|..++=..--|.|-
T Consensus 305 ~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GG----------TGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 305 KISVKLVAEHGVGTIAAGVAKAGADVITIDGADGG----------TGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred eEEEEEecccchHHHHhhhhhccCCEEEEcCCCCc----------CCCCcHhHhhcCCchHHHHHHHHHHHHH
Confidence 366666677777777776888899999995 4443 3334567889999999988777777664
No 148
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.66 E-value=59 Score=24.29 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHH
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQF 146 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~l 146 (173)
.....++.+..++.| +.+-..+--+.|.+.|..+.. .+|+|.+-+...++-.. .|+.++..++
T Consensus 95 ~~~~~r~i~~Ik~~G--~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ---~Fi~~~l~Ki 157 (220)
T COG0036 95 TEHIHRTIQLIKELG--VKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQ---KFIPEVLEKI 157 (220)
T ss_pred CcCHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCccc---ccCHHHHHHH
Confidence 345666677777778 888888888899999999999 89998887665554433 3455554444
No 149
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=54.65 E-value=75 Score=26.35 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 70 KYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
...-+.....++.+.+.+.+.| ..+.+.-...+..+-|-+.+++++.+.||++-+-
T Consensus 57 ~~~lenLd~~l~~~~~~v~~~G--g~vy~A~~aedA~~ii~~iv~~k~~k~vVKsKSm 112 (459)
T COG1139 57 LHVLENLDEYLEQLEENVTRNG--GHVYFAKDAEDAREIIGEIVGEKNGKKVVKSKSM 112 (459)
T ss_pred HHHHHhHHHHHHHHHHHHHHcC--CEEEEeCCHHHHHHHHHHHHhhccCcEEEEecch
Confidence 3334455667777778888888 6776666556778888899999999999999643
No 150
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=54.63 E-value=96 Score=23.76 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCceEEEEEEeeCChHHHHHHH---HhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGT---VEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
..+.+.+...| +++..+...||-.+.|.+. +.+. +|+||+. .|.++-.. .-|.+-+.+....|+.+.
T Consensus 24 ~~la~~L~~~G--~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~D------DiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 24 AFLADELTELG--VDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHD------DLTAEAVAKALGRPLVLD 93 (255)
T ss_pred HHHHHHHHhcC--ceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCcc------HhHHHHHHHHhCCCcccC
Confidence 34445556677 9999999999777666654 4444 9999884 22222222 225567777788888876
Q ss_pred hHHHHHHh
Q 030672 158 DLILFQIL 165 (173)
Q Consensus 158 ~~~~~~~~ 165 (173)
+--..++.
T Consensus 94 ~~al~~i~ 101 (255)
T COG1058 94 EEALAMIE 101 (255)
T ss_pred HHHHHHHH
Confidence 54444443
No 151
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.24 E-value=1.3e+02 Score=25.03 Aligned_cols=91 Identities=9% Similarity=0.000 Sum_probs=52.4
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
++...++--+.-+...|..+.+ .+ .++.++......+ ...++.+..++
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~-~G--~kV~lV~~D~~R~-----------------------------aA~eQLk~~a~ 152 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQR-KG--FKPCLVCADTFRA-----------------------------GAFDQLKQNAT 152 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CC--CCEEEEcCcccch-----------------------------hHHHHHHHHhh
Confidence 4445666666677777776643 45 6777775532110 12233334444
Q ss_pred hcCCceEEEEEEeeCChHH---HHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 89 NFQNNIHVKRVVGCGDAKD---VICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~~~~---~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+ +++.......+|.. .-++.+++.++|+|++-+.|+.....
T Consensus 153 ~~~--vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 153 KAR--IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred ccC--CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 445 66644333346543 34455666799999999999876543
No 152
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.17 E-value=39 Score=21.43 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+..++.+++.| ++++.... + ..++.+... ++|+++++..-+..+.. ..+.+....+||..=+
T Consensus 19 l~~k~~~~~~~~g--i~~~v~a~--~-~~~~~~~~~--~~Dvill~pqi~~~~~~---------i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 19 LVNKMNKAAEEYG--VPVKIAAG--S-YGAAGEKLD--DADVVLLAPQVAYMLPD---------LKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHHHHHHHCC--CcEEEEEe--c-HHHHHhhcC--CCCEEEECchHHHHHHH---------HHHHhhhcCCCEEEeC
Confidence 3455666667777 66543332 2 223444454 78999999765544443 3566777788888755
Q ss_pred HHHHHHhh
Q 030672 159 LILFQILQ 166 (173)
Q Consensus 159 ~~~~~~~~ 166 (173)
...+=.++
T Consensus 83 ~~~Y~~md 90 (95)
T TIGR00853 83 GAQYGKLT 90 (95)
T ss_pred hhhcccCC
Confidence 55444433
No 153
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=53.99 E-value=17 Score=28.23 Aligned_cols=61 Identities=11% Similarity=-0.012 Sum_probs=44.0
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+=..-..+ ....++++.|++.+..+|+.-+.+.....+. ..++.....+.+++.+||.+
T Consensus 17 yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~--~~~~~~~~~~a~~~~vPVal 78 (287)
T PF01116_consen 17 YAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGL--EYLAAMVKAAAEEASVPVAL 78 (287)
T ss_dssp -BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHH--HHHHHHHHHHHHHSTSEEEE
T ss_pred CeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhH--HHHHHHHHHHHHHcCCCEEe
Confidence 4455555555 7899999999999999999887654332221 34777899999999999987
No 154
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=53.98 E-value=25 Score=24.27 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhcCCCEEEEecCC----CChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 105 AKDVICGTVEKLEADTLVMGSHG----YGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 105 ~~~~I~~~a~~~~~dllV~G~~~----~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
..+.|.+.+++++++.||+|-+- ..+... ...-..+..|-.+..+||.+.|
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~---~~~~~f~~~L~~r~~lpv~l~D 95 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRA---ELARKFAERLKKRFNLPVVLWD 95 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhH---HHHHHHHHHHHHhcCCCEEEEc
Confidence 57888899999999999999543 111211 1233345667777779998855
No 155
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=53.84 E-value=1.1e+02 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.++|++++...|.-++..+... .+ .++.++++..
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~---~g--l~~l~vt~~~ 94 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKK---LG--LNPLLVTVDP 94 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHH---hC--CceEEEEECC
Confidence 5999999999988777655432 35 5666677643
No 156
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=53.20 E-value=49 Score=26.51 Aligned_cols=63 Identities=6% Similarity=-0.003 Sum_probs=43.8
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhh-h-----------hhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRY-K-----------QLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~-~-----------~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-... ....+|++.|++.+..+|+.-+.+.... ... + ...++.....+..++.+||-+
T Consensus 16 yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 92 (345)
T cd00946 16 FAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVL 92 (345)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 4444444444 7789999999999999999987763221 110 0 013667778889999999887
No 157
>PRK02551 flavoprotein NrdI; Provisional
Probab=53.01 E-value=9.3 Score=26.80 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=29.4
Q ss_pred HHHHHHHHh-hcC--CCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 106 KDVICGTVE-KLE--ADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 106 ~~~I~~~a~-~~~--~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+.+.++.. +++ .-.=|+|+..+++-. .++-.++.+.+++.+|+|.
T Consensus 80 p~~v~dFL~~~~N~~~~~gVigsGNrNfg~-----~F~~aa~~ia~~~~vP~L~ 128 (154)
T PRK02551 80 TTPLGDFIAYHDNAKRCLGIIGSGNRNFNN-----QYCLTAKQYAKRFGFPMLA 128 (154)
T ss_pred hHHHHHHHcchhhhhheEEEEeecccHHHH-----HHHHHHHHHHHHcCCCEEE
Confidence 445555542 222 333455655554433 3888999999999999996
No 158
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=53.01 E-value=48 Score=25.69 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=43.7
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCCC-CCeehh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNSQ-PSRLFG 157 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~~-~pvL~~ 157 (173)
.-+-..-... ...+++++.|++.+..+|+.-+.+.... .+. ..+......+..++. +||.++
T Consensus 16 yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~vpv~lh 80 (282)
T TIGR01859 16 YAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGY--KMAVAMVKTLIERMSIVPVALH 80 (282)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcH--HHHHHHHHHHHHHCCCCeEEEE
Confidence 3344444444 7799999999999999999877654321 100 236677788888888 999885
No 159
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=52.98 E-value=71 Score=27.49 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeC-ChH---HHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCG-DAK---DVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~---~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
...+.+...++++| ++++..+..- ... ..+.+.+++.+++.+|.+....+.+.+
T Consensus 424 ~~~~~~~~~l~~~g--~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~ 481 (577)
T PLN02948 424 PTMKDAAEILDSFG--VPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPG 481 (577)
T ss_pred HHHHHHHHHHHHcC--CCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchH
Confidence 35666777777888 8888777653 333 444555667789988888877776766
No 160
>PRK00074 guaA GMP synthase; Reviewed
Probab=52.81 E-value=1.4e+02 Score=25.24 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=28.2
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.++++|++++.-.|.-++..+.+.. + .++.++|+...
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l---g--~~v~av~vd~g 251 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI---G--DQLTCVFVDHG 251 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh---C--CceEEEEEeCC
Confidence 3789999999888887777665532 5 68999999553
No 161
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=52.78 E-value=18 Score=31.90 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.|.+.|++.++++++|.|-|..--...+.. +-.++..+=+..-+|||+|+
T Consensus 445 vp~~~Ile~a~~~~~D~IglSGLit~Sl~~-----M~~v~~em~r~~~iPvliGG 494 (842)
T COG1410 445 VPAEKILEAAEEEKADIIGLSGLITPSLDE-----MKEVLEEMNRGGFIPVLIGG 494 (842)
T ss_pred CcHHHHHHHHHHhccceeeecccccccHHH-----HHHHHHHhhhcCccceeecc
Confidence 678999999999999988775433333333 33455555555559999975
No 162
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=52.52 E-value=1e+02 Score=23.37 Aligned_cols=42 Identities=2% Similarity=-0.085 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 106 KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+.|++.+.+.++|+|++|-.... -+. + ..+.....+.+|++
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~Pk-QE~----~----~~~~~~~~~~~v~~ 187 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGSPK-QEI----F----MRDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcH-HHH----H----HHHHHHhCCCCEEE
Confidence 466999999999999999964322 222 1 24556666777766
No 163
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=52.36 E-value=48 Score=25.80 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
+++++.+++ .+ .-+=..=..+ ....+|++.|++.+..+||=.+.|...+-.-. ..+-.....++.+.++||-
T Consensus 7 ~~ll~~Ake----~~--yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~-~~~~~~v~~~a~~~~vPV~ 79 (286)
T COG0191 7 KELLDKAKE----NG--YAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGA-DSLAHMVKALAEKYGVPVA 79 (286)
T ss_pred HHHHHHHHH----cC--CceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchH-HHHHHHHHHHHHHCCCCEE
Confidence 345555444 33 4455555555 77899999999999999999887753222100 1344567788888999998
Q ss_pred h
Q 030672 156 F 156 (173)
Q Consensus 156 ~ 156 (173)
+
T Consensus 80 l 80 (286)
T COG0191 80 L 80 (286)
T ss_pred E
Confidence 8
No 164
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=52.33 E-value=30 Score=26.63 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCceEEEEEEeeCC----hHHHHHHHHhhcCCCEEEEec
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGD----AKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~----~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++..++.++ +++........ ..+.+++..+++++|+||+..
T Consensus 129 dl~~~v~~~~--IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLAR 174 (287)
T COG0788 129 DLRPLVERFD--IPFHHIPVTKENKAEAEARLLELLEEYGADLVVLAR 174 (287)
T ss_pred HHHHHHHHcC--CCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehh
Confidence 4455566677 88887777543 357788999999999999986
No 165
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=52.23 E-value=62 Score=20.97 Aligned_cols=63 Identities=6% Similarity=-0.120 Sum_probs=39.4
Q ss_pred hcCCceEEEEEEeeCC-hHHHHHHHHhh-cCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 89 NFQNNIHVKRVVGCGD-AKDVICGTVEK-LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~-~~~~I~~~a~~-~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.| ++++....... -...|.+..++ .++|+||--..+...... .-.|....+......+|++.
T Consensus 40 ~~G--i~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~---~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 40 DAG--IPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCT---DEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HcC--CceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCccccc---CCChHHHHHHHHHcCCCEEE
Confidence 356 77766544321 23668899999 999999986554431111 12455666776667888875
No 166
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=52.22 E-value=1.1e+02 Score=23.76 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=53.5
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
....||.|..+++.....++-.+..- ...+ +++.++-...+ .
T Consensus 87 ~~~~ri~vl~Sg~g~nl~al~~~~~~-~~~~--~~i~~visn~~--~--------------------------------- 128 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLNDLLYRWRI-GELP--MDIVGVVSNHP--D--------------------------------- 128 (286)
T ss_pred ccCceEEEEEcCCcccHHHHHHHHHc-CCCC--cEEEEEEECCc--c---------------------------------
Confidence 35678999999988888888777664 3334 66666533221 0
Q ss_pred HHHHHHhcCCceEEEEEEee--C--ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGC--G--DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~--g--~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+...+++.| +++...... . +....+.+..++.++|++|+..-.
T Consensus 129 ~~~lA~~~g--Ip~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 129 LEPLAAWHG--IPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred HHHHHHHhC--CCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeChh
Confidence 112245566 666543211 1 234568888999999999998544
No 167
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=52.11 E-value=1.2e+02 Score=24.26 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.9
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
++|+|++++.-.|.-++..+.+ .+ .+++.+++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G--~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QG--YEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cC--CeEEEEEEE
Confidence 4799999999888877766555 36 789999884
No 168
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=51.80 E-value=1.3e+02 Score=24.29 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=67.5
Q ss_pred CcEEEEEecC-ChH-HHHHHHHHHhhcCCCC--CCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDE-SEE-SMHALSWCLNNLFSPD--TNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 5 ~~~ILv~vd~-s~~-s~~al~~A~~la~~~~--~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
-++.+|.+-. |-+ -+.+++||..+..... .+.-+.++.++...|-.. .++-+....++...... ..+=+
T Consensus 51 d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs-~g~kGl~~DP~ldgs~~------i~~GL 123 (349)
T PRK09261 51 DDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTT-VGWKGLINDPDLDGSFD------INDGL 123 (349)
T ss_pred CCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCC-CCCcCCCcCcCcccccc------HHHHH
Confidence 3556666654 333 3568888887755421 002345666655443333 33333222222211111 11122
Q ss_pred HHHHHH---HHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 81 NRAEAV---YRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 81 ~~~~~~---~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
..+++. ..+.| .++-+++..-...+-+.+ . +|++.+|++.--... -..++....+||+|
T Consensus 124 ~~~R~ll~~~~e~G--lpvatE~ld~~~~~y~~d----l-vs~~~IGARt~esq~----------hr~~asg~~~PVg~ 185 (349)
T PRK09261 124 RIARKLLLDINELG--LPAATEFLDPITPQYIAD----L-ISWGAIGARTTESQV----------HRELASGLSCPVGF 185 (349)
T ss_pred HHHHHHHHHHHHhC--CCeEEEecccccHHHHHh----h-cceeeeccchhcCHH----------HHHHhcCCCCeeEe
Confidence 222332 45677 899999988754443333 3 778899987643322 25667788899988
No 169
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=51.76 E-value=73 Score=25.55 Aligned_cols=29 Identities=7% Similarity=-0.075 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|++.+. .+|+++|=..
T Consensus 160 ~~~~RIa~~AF~~A~~r~~-k~Vt~v~KaN 188 (344)
T PRK03437 160 FGVERVVRDAFERAQKRPR-KHLTLVHKTN 188 (344)
T ss_pred HHHHHHHHHHHHHHHhCCC-CeEEEEECCc
Confidence 4578999999999988753 5688887654
No 170
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=51.74 E-value=70 Score=24.88 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
|+...+..++.+ +++.-.... ..-.+.|.+..+++.+|+||+-.+
T Consensus 118 L~~Cl~~Ykql~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 118 LNKCLKVYKQLG--IPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHHHcC--CceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 455555566666 777766554 588899999999999999999543
No 171
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=51.65 E-value=56 Score=25.73 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=43.4
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC-CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ-PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~-~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+.....+. .++......+..+++ +||-+
T Consensus 17 yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~--~~~~~~~~~~a~~~~~VPVal 79 (307)
T PRK05835 17 YGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGI--DMAVGMVKIMCERYPHIPVAL 79 (307)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCCh--HHHHHHHHHHHHhcCCCeEEE
Confidence 4455555555 7799999999999999999987764322111 235567777888886 89877
No 172
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.54 E-value=46 Score=23.52 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=28.8
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.....|++.+.+.++|+|++|-.... -+. + ..+...+.+.+|++
T Consensus 86 ~~~~~i~~~I~~~~pdiv~vglG~Pk-QE~----~----~~~~~~~l~~~v~~ 129 (171)
T cd06533 86 EEEEEIIERINASGADILFVGLGAPK-QEL----W----IARHKDRLPVPVAI 129 (171)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCCCH-HHH----H----HHHHHHHCCCCEEE
Confidence 33456899999999999999964432 222 1 24455555677666
No 173
>PRK05920 aromatic acid decarboxylase; Validated
Probab=51.01 E-value=40 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
..+||++++.++-.+.++++..-.|.+. | .+|+++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g--~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-D--YEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 3589999999999999999999888664 6 7777664
No 174
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=50.39 E-value=78 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
|+..-+..++.+ +++.-... +..-.+.|.+..+++.+|+||+-.+
T Consensus 117 L~~Cl~~Ykql~--i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 117 LRKCLKLYKKIG--VPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHHHHHHhC--CceEEEEecchhchHHHHHHHHHhCCCEEEEeCc
Confidence 444445555666 77665544 4588899999999999999999543
No 175
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=49.89 E-value=57 Score=25.16 Aligned_cols=105 Identities=12% Similarity=-0.011 Sum_probs=66.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 030672 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (173)
Q Consensus 14 ~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (173)
-|=++..-+..++.-.+..| +++.---++.|.+....+.. ..++-+...++....+|
T Consensus 53 CsvEs~E~i~~~A~~vk~~G--a~~lRGgafKPRTSPYsFQG-------------------lge~gL~~l~~a~~~~G-- 109 (286)
T COG2876 53 CSVESEEQVRETAESVKAAG--AKALRGGAFKPRTSPYSFQG-------------------LGEEGLKLLKRAADETG-- 109 (286)
T ss_pred cccCCHHHHHHHHHHHHHcc--hhhccCCcCCCCCCcccccc-------------------cCHHHHHHHHHHHHHcC--
Confidence 35556666666666667777 77777777776654333221 12245666666667788
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
..+.++++.-.-.+.+.++ +|+|=+|++.-..|.= -+-+-+...|||+
T Consensus 110 l~vvtEvm~~~~~e~~~~y-----~DilqvGARNMQNF~L----------Lke~G~~~kPvLL 157 (286)
T COG2876 110 LPVVTEVMDVRDVEAAAEY-----ADILQVGARNMQNFAL----------LKEVGRQNKPVLL 157 (286)
T ss_pred CeeEEEecCHHHHHHHHhh-----hhHHHhcccchhhhHH----------HHHhcccCCCeEE
Confidence 8999999876555555554 6788889877654431 2345567788887
No 176
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=49.81 E-value=67 Score=25.01 Aligned_cols=61 Identities=5% Similarity=-0.038 Sum_probs=43.5
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCC--CCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNS--QPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~--~~pvL~ 156 (173)
.-+-..-..+ ....+|++.|++.+..+|+..+.+.... .+. ..+.........++ .+||-+
T Consensus 18 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~--~~~~~~~~~~a~~~~~~VPV~l 82 (288)
T TIGR00167 18 YAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGL--GAISAMVKAMSEAYPYGVPVAL 82 (288)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCH--HHHHHHHHHHHHhccCCCcEEE
Confidence 4444554555 7789999999999999999987664322 110 23677778888888 888876
No 177
>PRK09875 putative hydrolase; Provisional
Probab=49.68 E-value=75 Score=24.77 Aligned_cols=51 Identities=6% Similarity=-0.040 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCC--CEEEEecCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEA--DTLVMGSHGYG 129 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~--dllV~G~~~~~ 129 (173)
++.++.+.+...+.| .++.+|.-.|+...++++.+++.++ +-||+|....+
T Consensus 138 ~kvl~Aaa~a~~~TG--~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~~ 190 (292)
T PRK09875 138 EKVFIAAALAHNQTG--RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLK 190 (292)
T ss_pred HHHHHHHHHHHHHHC--CcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCCC
Confidence 445555555556677 8888887777777778889998888 88999987543
No 178
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=49.28 E-value=19 Score=29.53 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=47.6
Q ss_pred eEEEEEEeeCCh---------HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHH
Q 030672 94 IHVKRVVGCGDA---------KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLIL 161 (173)
Q Consensus 94 v~~~~~~~~g~~---------~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~ 161 (173)
.++..-+..||- .+.|++++++.++|++|.|.-=..+.-+ ..=|.++..+-.+..+|++-+=+.+
T Consensus 44 ~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG---~acg~va~aV~e~~~IP~vt~My~E 117 (431)
T TIGR01918 44 AEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYG---VACGEICKVVQDKLNVPAVTSMYVE 117 (431)
T ss_pred CEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH---HHHHHHHHHHHHhhCCCeEEEeccc
Confidence 556666666632 3678999999999999999643333333 3477788888999999999876554
No 179
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=49.05 E-value=60 Score=25.33 Aligned_cols=61 Identities=13% Similarity=0.009 Sum_probs=41.7
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCC--CCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNS--QPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~--~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+.-+.+.... .+ + ..+......+..++ .+||-+
T Consensus 18 yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~-~-~~~~~~~~~~a~~~~~~vPV~l 82 (293)
T PRK07315 18 YAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG-Y-KVCKNLIENLVESMGITVPVAI 82 (293)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc-H-HHHHHHHHHHHHHcCCCCcEEE
Confidence 4444454555 7789999999999999999987764322 11 0 23566677788777 667766
No 180
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=48.86 E-value=90 Score=21.77 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCCEEEEecCCC
Q 030672 106 KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.|.+.++++++|+|++|....
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCcc
Confidence 57788888999999999997754
No 181
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.63 E-value=70 Score=22.18 Aligned_cols=73 Identities=10% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC--CCCCeehhhHHH
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN--SQPSRLFGDLIL 161 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~--~~~pvL~~~~~~ 161 (173)
.+.++..| .++..--.. .+.+++++.|-++++|.|++++....... +.-...+.+-.. ..+.|+.|..++
T Consensus 33 a~~l~d~G--feVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~-----l~~~lve~lre~G~~~i~v~~GGvip 104 (143)
T COG2185 33 ARALADAG--FEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLT-----LVPGLVEALREAGVEDILVVVGGVIP 104 (143)
T ss_pred HHHHHhCC--ceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHH-----HHHHHHHHHHHhCCcceEEeecCccC
Confidence 34455566 443332222 45688999999999999999876544332 133344444333 344456676666
Q ss_pred HHH
Q 030672 162 FQI 164 (173)
Q Consensus 162 ~~~ 164 (173)
.|.
T Consensus 105 ~~d 107 (143)
T COG2185 105 PGD 107 (143)
T ss_pred chh
Confidence 554
No 182
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=48.51 E-value=58 Score=26.07 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCce
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR-NFQNNI 94 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v 94 (173)
+.+++.+++|+++|++.+. .+|+++|=....... .-+.+.+.+.++ ++. ++
T Consensus 160 ~~~eRi~r~AF~~A~~r~~-k~Vt~v~KaNvl~~~--------------------------~lf~~~~~eva~~~yp-~I 211 (348)
T PF00180_consen 160 EGIERIARFAFEYARKRGR-KKVTVVHKANVLKST--------------------------DLFREVFQEVAKQEYP-DI 211 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTT-SEEEEEESTTTSTTH--------------------------HHHHHHHHHHHHHTHT-TS
T ss_pred chhhHHHHHHHHHHHHhCC-ceEEEEeccchhHHH--------------------------HHHHHHHHHHHHhhcc-ee
Confidence 4578999999999999844 899988765433211 123444444454 444 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++.... +...-.++.-= .++|.||+..
T Consensus 212 ~~~~~~v-D~~~~~Lv~~P--~~fdViv~~N 239 (348)
T PF00180_consen 212 EVEHMLV-DAAAMQLVKNP--EQFDVIVTPN 239 (348)
T ss_dssp EEEEEEH-HHHHHHHHHSG--GGESEEEEEH
T ss_pred Eeeeeec-hhhhheeecCC--cceeEEeecc
Confidence 7776665 22233333333 3778777764
No 183
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=48.38 E-value=71 Score=25.33 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
.+.+++.+++|+++|++.+ .+|+++|=.
T Consensus 140 r~~~eRi~r~AF~~A~~r~--~~Vt~v~Ka 167 (322)
T TIGR02088 140 REGSERIARFAFNLAKERN--RKVTCVHKA 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEeCC
Confidence 4568899999999999887 566666543
No 184
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.29 E-value=69 Score=20.25 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+..++.+++.| ++++... .+. .++.+... ++|+++++..-+..+.. ....+....+||..-+
T Consensus 15 ~~~ki~~~~~~~~--~~~~v~~--~~~-~~~~~~~~--~~Diil~~Pqv~~~~~~---------i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 15 LVKKMKKAAEKRG--IDAEIEA--VPE-SELEEYID--DADVVLLGPQVRYMLDE---------VKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHHHHHHHCC--CceEEEE--ecH-HHHHHhcC--CCCEEEEChhHHHHHHH---------HHHHhccCCCcEEEcC
Confidence 3556667777777 6543332 232 22334444 89999999765544443 2444556788888755
Q ss_pred HHH
Q 030672 159 LIL 161 (173)
Q Consensus 159 ~~~ 161 (173)
...
T Consensus 79 ~~~ 81 (96)
T cd05564 79 MMD 81 (96)
T ss_pred hHh
Confidence 443
No 185
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=48.28 E-value=74 Score=20.62 Aligned_cols=64 Identities=5% Similarity=-0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+..++.+++.| ++++.. ..+ ..++.+.....++|++++|..-+-.... ..++.....+||..
T Consensus 17 la~k~k~~~~e~g--i~~~i~--a~~-~~e~~~~~~~~~~DvIll~PQi~~~~~~---------i~~~~~~~~ipv~~ 80 (104)
T PRK09590 17 MAKKTTEYLKEQG--KDIEVD--AIT-ATEGEKAIAAAEYDLYLVSPQTKMYFKQ---------FEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHCC--CceEEE--Eec-HHHHHHhhccCCCCEEEEChHHHHHHHH---------HHHHhhhcCCCEEE
Confidence 3444566666777 654432 222 2345555556689999999755433332 45666666777776
No 186
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=48.23 E-value=69 Score=25.70 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=43.7
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC-CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ-PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~-~pvL~ 156 (173)
.-+=..-..+ ....+|++.|++.+..+|+..+.+.....+. .++......+..+++ +||-+
T Consensus 16 yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~--~~~~~~~~~~ae~~~~VPVal 78 (347)
T TIGR01521 16 YGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGA--PFLRHLILAAIEEYPHIPVVM 78 (347)
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCH--HHHHHHHHHHHHhCCCCcEEE
Confidence 4444444445 7799999999999999999988764322111 246677788888886 88877
No 187
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=47.78 E-value=1.2e+02 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=12.7
Q ss_pred eCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 102 CGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 102 ~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.|+..+.++..-+ ++|.+++-.+.+.
T Consensus 102 vg~~~e~~~~~~~--~iDF~vVDc~~~d 127 (218)
T PF07279_consen 102 VGEAPEEVMPGLK--GIDFVVVDCKRED 127 (218)
T ss_pred ecCCHHHHHhhcc--CCCEEEEeCCchh
Confidence 3544444443333 5666666554433
No 188
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=47.77 E-value=56 Score=19.33 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.8
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEE
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVL 40 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~ 40 (173)
++|.++.|.+....++...+.+.+...+ ..+.+
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~--~~~~i 76 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALG--GRVRV 76 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCC--CEEEE
Confidence 8999999999988777777777766544 44443
No 189
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=47.67 E-value=66 Score=24.84 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=51.3
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
+|-|.+.....++.-++-|-.+.+..+ .. .+.|+.-|..+.. ..+....+...+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg--~~-~I~h~tyPdnf~~-----------------------e~EttIskI~~l 57 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYG--DV-MIKHVTYPDNFMS-----------------------EQETTISKIVSL 57 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHH--HH-EEEEEE--TTGGG-----------------------CHHHHHHHHHGG
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhC--cc-eEEEEeCCCcccc-----------------------hHHHHHHHHHHh
Confidence 466677666667777777777777777 43 7888877654321 122344444444
Q ss_pred HHhcCCceEEEEEEeeC-Ch-HHHHHHHHhhcCCCEEEEecCCC
Q 030672 87 YRNFQNNIHVKRVVGCG-DA-KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g-~~-~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+... .+...++.. .| .-.-.+-+++...|++.++....
T Consensus 58 AdDp----~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 58 ADDP----DMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp GG-T----TEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred ccCC----CccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 4443 366666654 33 45666788999999999986543
No 190
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=47.64 E-value=87 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=24.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.++|++++...|.-++..+.+. .+ .++.++++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~---~~--~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEK---YG--LNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHH---hC--CceEEEEeCC
Confidence 6899999999998888777653 12 3667777743
No 191
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=47.60 E-value=92 Score=21.51 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceE---EEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHH-
Q 030672 74 ESVNSVMNRAEAVYRNFQNNIH---VKRVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSF- 144 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~v~---~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~- 144 (173)
....++++-+.+.+.+.| +. ++..-+-| ...-.+-..++..++|-+|. |. +|.+.-.. ..-..+++
T Consensus 20 ~I~~~Ll~ga~~~l~~~g--v~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e---~V~~~v~~g 94 (141)
T PLN02404 20 IITKNLLEGALETFKRYS--VKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYD---AVANSAASG 94 (141)
T ss_pred HHHHHHHHHHHHHHHHcC--CCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhH---HHHHHHHHH
Confidence 556778888888888888 54 34444445 33444455666667887664 64 45444333 23444444
Q ss_pred --HHhcCCCCCeehhhH---HHHHHhhccc
Q 030672 145 --QFLPNSQPSRLFGDL---ILFQILQGSL 169 (173)
Q Consensus 145 --~ll~~~~~pvL~~~~---~~~~~~~~~~ 169 (173)
++--...+||.+|=+ -..|-++++-
T Consensus 95 l~~vsl~~~~PV~~GVLt~~~~eQA~~Rag 124 (141)
T PLN02404 95 VLSAGLNSGVPCIFGVLTCDDMEQALNRAG 124 (141)
T ss_pred HHHHHhccCCCEEEEEcCCCCHHHHHHHhC
Confidence 445568899988533 3456555553
No 192
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=47.56 E-value=1.4e+02 Score=23.76 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.4
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
+|+|++++.-.|.-++..+.+ .+ .+++.+++..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g--~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QG--YEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cC--CcEEEEEEec
Confidence 589999998888876655544 36 6888888754
No 193
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=47.31 E-value=45 Score=23.84 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=27.0
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
+||++++.++-.+.++.++.-.|.+ .+ .+++++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~g--~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-LG--YDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 6899999999999999987777744 46 7777663
No 194
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=46.82 E-value=1.2e+02 Score=22.74 Aligned_cols=75 Identities=8% Similarity=-0.018 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccch---HHHHhcCCCCCee
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAAL---SFQFLPNSQPSRL 155 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~---~~~ll~~~~~pvL 155 (173)
..+++.+.+++.| +..-..+--..+.+.|...++...--+.+|+..+.++... .+..+. ..++-+.+.+|+.
T Consensus 117 e~~~~~~~~~~~g--~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~---~~~~~~~~~i~~lr~~~~~pI~ 191 (242)
T cd04724 117 EAEEFREAAKEYG--LDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGART---ELPDDLKELIKRIRKYTDLPIA 191 (242)
T ss_pred HHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCcc---CCChhHHHHHHHHHhcCCCcEE
Confidence 3456666777777 6666666666777777777663444455666555443322 112222 2334444678888
Q ss_pred hhh
Q 030672 156 FGD 158 (173)
Q Consensus 156 ~~~ 158 (173)
+|.
T Consensus 192 vgg 194 (242)
T cd04724 192 VGF 194 (242)
T ss_pred EEc
Confidence 854
No 195
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=46.76 E-value=73 Score=20.09 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=25.7
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
|+|++++...|.-.+..+..+ + .++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~--~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----G--YQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----C--CCEEEEEEcCCC
Confidence 589999999998777777664 4 478888886543
No 196
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=46.71 E-value=88 Score=21.50 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=60.0
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCC-CCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSP-DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~-~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
.++++|++.++.++. ..++.++..+.... | .+| .+...
T Consensus 2 ~~~~~v~lsv~d~dK-~~l~~~a~~l~~ll~G--f~l---~AT~g----------------------------------- 40 (142)
T PRK05234 2 PARKRIALIAHDHKK-DDLVAWVKAHKDLLEQ--HEL---YATGT----------------------------------- 40 (142)
T ss_pred CcCcEEEEEEeccch-HHHHHHHHHHHHHhcC--CEE---EEeCh-----------------------------------
Confidence 356778888876653 56778888876653 3 332 22221
Q ss_pred HHHHHHHhc-CCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEec--CCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 82 RAEAVYRNF-QNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGS--HGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 82 ~~~~~~~~~-~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~--~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+.+++. | ++++..+.... -...|.+.+++..+|+||--. .++..... .|..-.+..-...+|++-
T Consensus 41 -Ta~~L~~~~G--i~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~-----D~~~IRR~Av~~~IP~~T 111 (142)
T PRK05234 41 -TGGLIQEATG--LDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPHDP-----DVKALLRLADVWNIPVAT 111 (142)
T ss_pred -HHHHHHhccC--CeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCCCCCcccc-----hHHHHHHHHHHcCCCEEc
Confidence 01112234 6 77776633301 126699999999999999865 33332111 233445555556788776
No 197
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=46.36 E-value=46 Score=24.79 Aligned_cols=37 Identities=8% Similarity=0.018 Sum_probs=31.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
.++|.+++|++....+|...+..++...+ ..+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G--~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAG--FITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 47899999999999999999999988777 67666533
No 198
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=46.29 E-value=66 Score=30.31 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=40.0
Q ss_pred CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC-CCCCeehhhHHHHH
Q 030672 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN-SQPSRLFGDLILFQ 163 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~-~~~pvL~~~~~~~~ 163 (173)
..|.+.|++.++++++|+|.|...-.+.... +..+.+.+-+. ..+||++|+...-+
T Consensus 769 dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~-----m~~vi~~L~~~g~~v~v~vGGa~~s~ 825 (1178)
T TIGR02082 769 MVPIEKILEAAKDHNADVIGLSGLITPSLDE-----MKEVAEEMNRRGITIPLLIGGAATSK 825 (1178)
T ss_pred CCCHHHHHHHHHHhCCCEEEEcCcccccHHH-----HHHHHHHHHhcCCCceEEEeccccch
Confidence 3678999999999999999998765555554 44455555333 45999998755433
No 199
>PRK08194 tartrate dehydrogenase; Provisional
Probab=46.19 E-value=69 Score=25.76 Aligned_cols=28 Identities=4% Similarity=0.003 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|++.. .+|+++|=..
T Consensus 161 ~~~eRI~r~Af~~A~~r~--~~Vt~v~KaN 188 (352)
T PRK08194 161 KGTERAMRYAFELAAKRR--KHVTSATKSN 188 (352)
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEeCcc
Confidence 457899999999998876 6788886544
No 200
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=46.15 E-value=1e+02 Score=21.72 Aligned_cols=83 Identities=10% Similarity=-0.064 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhcCC-ceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHH---
Q 030672 74 ESVNSVMNRAEAVYRNFQN-NIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSF--- 144 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~--- 144 (173)
....++++-+.+.+.+.|. ...++..-+-| ...-.+-..++..++|-+|. |. +|.+.-.. ..-..+++
T Consensus 23 ~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e---~V~~~v~~gl~ 99 (158)
T PRK12419 23 DIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHE---FVAQAVIDGLM 99 (158)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhH---HHHHHHHHHHH
Confidence 4556778888888888772 11233333445 33344445666667887665 64 45554333 23444444
Q ss_pred HHhcCCCCCeehhhH
Q 030672 145 QFLPNSQPSRLFGDL 159 (173)
Q Consensus 145 ~ll~~~~~pvL~~~~ 159 (173)
++--+..+||.+|=+
T Consensus 100 ~vsl~~~~PV~fGVL 114 (158)
T PRK12419 100 RVQLDTEVPVFSVVL 114 (158)
T ss_pred HHHhccCCCEEEEec
Confidence 455568999998643
No 201
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=46.11 E-value=1.2e+02 Score=23.10 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
.++++.+.+.+. + ++++-..+...+.. -+..+.|++.++|-+++.......... .-+-.--..+...++.|+
T Consensus 56 ~~l~~~~~~~~~--~-~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~l~~~~~~ia~~~~~pi 129 (284)
T cd00950 56 EAVIEAVVEAVN--G-RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EGLYAHFKAIAEATDLPV 129 (284)
T ss_pred HHHHHHHHHHhC--C-CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HHHHHHHHHHHhcCCCCE
Confidence 344555555443 1 24444444433443 444577899999988888664422111 012234567777789999
Q ss_pred ehhhHHH
Q 030672 155 LFGDLIL 161 (173)
Q Consensus 155 L~~~~~~ 161 (173)
++-..+.
T Consensus 130 ~lYn~P~ 136 (284)
T cd00950 130 ILYNVPG 136 (284)
T ss_pred EEEEChh
Confidence 9865553
No 202
>PF13362 Toprim_3: Toprim domain
Probab=45.87 E-value=56 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCcEEEEEecCChH--HHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 4 NERRVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 4 ~~~~ILv~vd~s~~--s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
..++|+|+.|.... ..++...+.+.+...+ ..+.++.-
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g--~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAG--IAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCC--CeEEEECC
Confidence 67899999999888 7778877777777766 55555533
No 203
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=45.77 E-value=45 Score=24.20 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=26.5
Q ss_pred cEEEEEecCChHHHHHH-HHHHhhcCCCCCCCeEEEEE
Q 030672 6 RRVVVAVDESEESMHAL-SWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al-~~A~~la~~~~~~~~l~~l~ 42 (173)
+||++++.+|..+.++. +..-.+ .+.| .+|+++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g--~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEG--AEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCc--CEEEEEE
Confidence 58999999999999997 666666 4446 7877664
No 204
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=45.68 E-value=1.1e+02 Score=23.53 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+. + ++++-..+.. +.. -++.+.+++.++|-+++....... ... +-.--..|...+++|
T Consensus 57 ~l~~~~~~~~~--~-~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~-----i~~~f~~v~~~~~~p 127 (289)
T cd00951 57 QVVRAAVEETA--G-RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEG-----LYAHVEAVCKSTDLG 127 (289)
T ss_pred HHHHHHHHHhC--C-CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH-----HHHHHHHHHhcCCCC
Confidence 34444444432 1 2555555543 444 444578899999999997665432 122 222235566678888
Q ss_pred eeh
Q 030672 154 RLF 156 (173)
Q Consensus 154 vL~ 156 (173)
|++
T Consensus 128 i~l 130 (289)
T cd00951 128 VIV 130 (289)
T ss_pred EEE
Confidence 876
No 205
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=45.64 E-value=1.7e+02 Score=24.19 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 106 KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
...+.+.++..++|.||+-....+.-.. .-..++..++|||+
T Consensus 52 ~~~~~~~~~~~~~d~ii~~~~tf~~~~~---------~~~~~~~~~~Pvll 93 (452)
T cd00578 52 ARKAAEEFNEANCDGLIVWMHTFGPAKM---------WIAGLSELRKPVLL 93 (452)
T ss_pred HHHHHHHHhhcCCcEEEEcccccccHHH---------HHHHHHhcCCCEEE
Confidence 4566677777799999987665443332 33445667899988
No 206
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=45.40 E-value=1.2e+02 Score=24.00 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeeC---ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ 151 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~ 151 (173)
...++++...+..++..+.+.+-.|..+| +..+-|.+...+.++|.=|+|.+....+.+++ --+.++-..+..+-+
T Consensus 197 k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl-~nL~~nl~dia~rY~ 275 (403)
T COG3867 197 KMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTL-NNLTTNLNDIASRYH 275 (403)
T ss_pred HHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcH-HHHHhHHHHHHHHhc
Confidence 44556666666666655557777777776 44788999999999999999999888777765 335566666776666
Q ss_pred CCeeh
Q 030672 152 PSRLF 156 (173)
Q Consensus 152 ~pvL~ 156 (173)
..|++
T Consensus 276 K~VmV 280 (403)
T COG3867 276 KDVMV 280 (403)
T ss_pred CeEEE
Confidence 66665
No 207
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=45.30 E-value=83 Score=21.43 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEEe
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~G 124 (173)
+.+++.| .++......+|-.+.|.+..++ .++|+||..
T Consensus 34 ~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 34 ALLEEAG--FNVSRLGIVPDDPEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHCC--CeEEEEeecCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 3444567 7777776666555666655442 279999984
No 208
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=44.91 E-value=9.5 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.030 Sum_probs=28.8
Q ss_pred hHHHHHHHHh--hcCCCE-EEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 105 AKDVICGTVE--KLEADT-LVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 105 ~~~~I~~~a~--~~~~dl-lV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
..+.+.++.+ ++.--+ =|+|+..+++-. .++-.++.+..+..+|+|.
T Consensus 57 vp~~v~~FL~~~~N~~~l~GVigSGNrNfg~-----~f~~aa~~ia~ky~VPll~ 106 (122)
T PF07972_consen 57 VPKQVIRFLENPDNRKLLRGVIGSGNRNFGD-----NFCLAADKIAEKYGVPLLY 106 (122)
T ss_dssp S-HHHHHHHHSHHHGGGEEEEEEEE-GGGGG-----GTTHHHHHHHHHHT--EEE
T ss_pred CCHHHHHHHHHHHHHhhheeEEecCCcHHHH-----HHHHHHHHHHHHcCCCEEE
Confidence 6677777766 333333 345555554433 3899999999999999996
No 209
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.90 E-value=1.3e+02 Score=22.93 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
...+.+.++++| +..-..+--..+.+.|...++..+-=+.+|+..|.++.+..+..-.-.....+-+.+..||.+|.
T Consensus 129 ~~~~~~~~~~~g--l~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgf 205 (256)
T TIGR00262 129 SGDLVEAAKKHG--VKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGF 205 (256)
T ss_pred HHHHHHHHHHCC--CcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeC
Confidence 345566667777 66666666666677777777744322556665555543220000122233344445677888743
No 210
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=44.81 E-value=79 Score=24.63 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=42.2
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCCC--CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNSQ--PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~~--~pvL~ 156 (173)
.-+-..-... ....++++.|++.+..+|+.-+.+.... .+. ..+......+..++. +||-+
T Consensus 18 yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~vPV~l 82 (286)
T PRK08610 18 YAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGF--YTVVKMVEGLMHDLNITIPVAI 82 (286)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcH--HHHHHHHHHHHHHcCCCCCEEE
Confidence 3344444444 7789999999999999999987764322 211 236677778887876 78876
No 211
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=44.55 E-value=79 Score=25.38 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=43.5
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCC-CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQ-PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~-~pvL~ 156 (173)
.-+-..-... ....+|++.|++.+..+|+..+.+.....+. .++......+..+++ +||-+
T Consensus 18 yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~--~~~~~~~~~~a~~~~~VPVal 80 (347)
T PRK09196 18 YGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGE--PFLRHLILAAVEEYPHIPVVM 80 (347)
T ss_pred ceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCH--HHHHHHHHHHHHhCCCCcEEE
Confidence 4444444444 7799999999999999999987764332221 346777788888775 88876
No 212
>PRK03673 hypothetical protein; Provisional
Probab=44.51 E-value=1.6e+02 Score=24.06 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=45.4
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEE-ecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHH
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVM-GSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLI 160 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~-G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~ 160 (173)
.+.+.+.| +++......+|-.+.|.+..++ ..+|+||+ |.-|.+.. .-+.+-+.+-...|+.+.+-.
T Consensus 27 a~~L~~~G--~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~d--------D~t~~avA~a~g~~L~~d~e~ 96 (396)
T PRK03673 27 ADFFFHQG--LPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSD--------DLSALAAATAAGEGLVLHEEW 96 (396)
T ss_pred HHHHHHCC--CEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCc--------ccHHHHHHHHcCCCceeCHHH
Confidence 34455677 8898888888777777776442 26898877 33343322 224466677778888876655
Q ss_pred HHHH
Q 030672 161 LFQI 164 (173)
Q Consensus 161 ~~~~ 164 (173)
...+
T Consensus 97 ~~~i 100 (396)
T PRK03673 97 LAEM 100 (396)
T ss_pred HHHH
Confidence 5443
No 213
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=44.43 E-value=1.3e+02 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.7
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|++++.-.|.-++.+|.+- + .+++.|++...
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~--~~v~alt~dyg 36 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----Y--DEVHCVTFDYG 36 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----C--CeEEEEEEEeC
Confidence 68999999999888888887542 4 58888888664
No 214
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=44.25 E-value=57 Score=20.12 Aligned_cols=63 Identities=13% Similarity=-0.042 Sum_probs=34.4
Q ss_pred HHhcCCceEEEEEE-eeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 87 YRNFQNNIHVKRVV-GCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 87 ~~~~~~~v~~~~~~-~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
+++.| +++++.+ ..+.-...+.+..++.++|+||--....+.... -.|...++..-...+|++
T Consensus 26 L~~~G--i~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~----~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 26 LREAG--LPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPH----EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHCC--CcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceec----cCcHHHHHHHHHcCCCee
Confidence 33456 7665322 122222459999999999999986543111111 134444555555555543
No 215
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=44.22 E-value=96 Score=25.14 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEe-cCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG-SHGY 128 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G-~~~~ 128 (173)
.++.+++++.. . +.++...+..++..+.+...+.+.++|.|++. ..|.
T Consensus 191 ~~~I~~Lr~~~--~--~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GG 239 (368)
T PF01645_consen 191 AQLIEELRELN--P--GKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGG 239 (368)
T ss_dssp HHHHHHHHHH---T--TSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT--
T ss_pred HHHHHHHHhhC--C--CCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCC
Confidence 34444444443 2 37888888889888888888889999999994 4443
No 216
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=44.01 E-value=1.9e+02 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=25.3
Q ss_pred eEEEEEEeeCChHHHHHH--HHhhcCCCEEEEe-cCCCChhhh
Q 030672 94 IHVKRVVGCGDAKDVICG--TVEKLEADTLVMG-SHGYGFIKR 133 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~--~a~~~~~dllV~G-~~~~~~~~~ 133 (173)
.-+...+..|+..+.|.+ +|.++++|.|.+= +.|.+.+..
T Consensus 147 P~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDy 189 (509)
T PF09043_consen 147 PVIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDY 189 (509)
T ss_dssp SEEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS
T ss_pred CeEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcc
Confidence 445566677999999986 4889999998775 445555544
No 217
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=43.86 E-value=1e+02 Score=21.11 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEE---EEEEeeC--ChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHH
Q 030672 73 SESVNSVMNRAEAVYRNFQNNIHV---KRVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSF 144 (173)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~v~~---~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~ 144 (173)
++...++++-+.+.+++.| +.. +..-+-| ...-.+-..++..++|-+|. |. +|.+.-.. ..-..+++
T Consensus 12 ~~i~~~L~~ga~~~l~~~g--~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e---~v~~~v~~ 86 (138)
T TIGR00114 12 RDITDMLLKGAIDALKRLG--AEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFE---YVADEAAK 86 (138)
T ss_pred HHHHHHHHHHHHHHHHHcC--CCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhH---HHHHHHHH
Confidence 3566778888888888888 543 3444445 33444456676677887665 64 35554444 22344444
Q ss_pred ---HHhcCCCCCeehhhH---HHHHHhhcc
Q 030672 145 ---QFLPNSQPSRLFGDL---ILFQILQGS 168 (173)
Q Consensus 145 ---~ll~~~~~pvL~~~~---~~~~~~~~~ 168 (173)
++--+..+||.+|=+ ...|-.+++
T Consensus 87 gl~~~sl~~~~PV~~GvLt~~~~eQa~~R~ 116 (138)
T TIGR00114 87 GIADLALDYDKPVIFGILTTGTIEQAIERA 116 (138)
T ss_pred HHHHHHhhhCCCEEEEecCCCCHHHHHHHc
Confidence 444568899988533 345555544
No 218
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=43.81 E-value=1.4e+02 Score=22.71 Aligned_cols=74 Identities=5% Similarity=-0.103 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+...+..|+.||+..| .+..=|.-++...... ..+......+-++.+.+++++++ |.+-
T Consensus 94 aleiM~KaI~LA~dLG--IRtIQLAGYDVYYE~~-----------------d~eT~~rFi~g~~~a~~lA~~aq--V~lA 152 (287)
T COG3623 94 ALEIMEKAIQLAQDLG--IRTIQLAGYDVYYEEA-----------------DEETRQRFIEGLKWAVELAARAQ--VMLA 152 (287)
T ss_pred HHHHHHHHHHHHHHhC--ceeEeeccceeeeccC-----------------CHHHHHHHHHHHHHHHHHHHhhc--cEEE
Confidence 5678889999999988 6666665555432211 12234445556677777788887 7777
Q ss_pred EEEeeCChHHHHHHH
Q 030672 98 RVVGCGDAKDVICGT 112 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~ 112 (173)
.++....-...|.++
T Consensus 153 vEiMDtpfm~sIsk~ 167 (287)
T COG3623 153 VEIMDTPFMNSISKW 167 (287)
T ss_pred eeecccHHHHHHHHH
Confidence 777766555666554
No 219
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=43.69 E-value=75 Score=25.54 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hh-hhhhc------------cc
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KR-YKQLI------------LA 140 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~-~~~~~------------~g 140 (173)
..++|..+.+ .+ .-+-..-..+ ....+|++.|++.+..+|+..+.+.... .+ .+ .. +.
T Consensus 9 ~k~~L~~A~~----~~--yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 81 (350)
T PRK09197 9 YQEMFDRAKE----NG--FALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGV-KDDGQGAAVLGAIAGA 81 (350)
T ss_pred HHHHHHHHHH----CC--ceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccc-cccchhhhhhhHHHHH
Confidence 4445554433 33 4455555555 7799999999999999999887653221 10 00 11 44
Q ss_pred chHHHHhcCCCCCeeh
Q 030672 141 ALSFQFLPNSQPSRLF 156 (173)
Q Consensus 141 s~~~~ll~~~~~pvL~ 156 (173)
.....+.+++.+||-+
T Consensus 82 ~~v~~~A~~~~VPVal 97 (350)
T PRK09197 82 KHVHEVAEHYGVPVIL 97 (350)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 5677888899999887
No 220
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=43.37 E-value=1.6e+02 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.1
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|++++.-.|.-++..+.+. .| .+++++|+...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G--~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IG--DRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hC--CCEEEEEEeCC
Confidence 78999999998888777666553 35 68999999664
No 221
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=43.17 E-value=1e+02 Score=23.01 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
..++.+.+++.| ..+-..+--+.+.+.+..+.. .+|+|.+=+...+
T Consensus 99 ~~~~l~~Ir~~g--~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PG 144 (223)
T PRK08745 99 VHRTIQLIKSHG--CQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPG 144 (223)
T ss_pred HHHHHHHHHHCC--CceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCC
Confidence 455566677777 777777777899999999999 8887766554443
No 222
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=42.91 E-value=2e+02 Score=23.99 Aligned_cols=75 Identities=9% Similarity=0.114 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh
Q 030672 36 NTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK 115 (173)
Q Consensus 36 ~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~ 115 (173)
+.|..|+|.++....... ..........+.+..+.+.+++.| .++.... .|++.+.|.+.+++
T Consensus 23 ~~vlpvyi~dp~~~~~~~--------------~~~~~~~fl~~sL~~L~~~L~~~G--~~L~v~~-~g~~~~~l~~l~~~ 85 (475)
T TIGR02766 23 GPVIPVFVWAPEEEGQYY--------------PGRVSRWWLKQSLAHLDQSLRSLG--TCLVTIR-STDTVAALLDCVRS 85 (475)
T ss_pred CCEEEEEEechHHhcccc--------------ccHHHHHHHHHHHHHHHHHHHHcC--CceEEEe-CCCHHHHHHHHHHH
Confidence 368889998764321100 001222355667777888888888 4444321 48999999999999
Q ss_pred cCCCEEEEecCC
Q 030672 116 LEADTLVMGSHG 127 (173)
Q Consensus 116 ~~~dllV~G~~~ 127 (173)
.+++-|..-...
T Consensus 86 ~~i~~v~~~~~~ 97 (475)
T TIGR02766 86 TGATRLFFNHLY 97 (475)
T ss_pred cCCCEEEEeccc
Confidence 999999887664
No 223
>PHA02031 putative DnaG-like primase
Probab=42.60 E-value=42 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
-++|+++.|++....+|...|++++...+ ..+.++.+
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~--~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLL--IEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcC--CceEEEEC
Confidence 37999999999999999999999988777 66666654
No 224
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=42.31 E-value=1.2e+02 Score=23.75 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=57.3
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
.-+..|+.++...+ ....=|+.--|.+.....+..++.+. ..+...+++...++. .+ ++++..
T Consensus 66 ~~~~~aa~~~~~~~--~~~IDlN~GCP~~~v~~~g~Ga~Ll~----------~p~~~~~iv~~~~~~---~~--~pvsvK 128 (309)
T PF01207_consen 66 EDLAEAAEIVAELG--FDGIDLNMGCPAPKVTKGGAGAALLK----------DPDLLAEIVKAVRKA---VP--IPVSVK 128 (309)
T ss_dssp HHHHHHHHHHCCTT---SEEEEEE---SHHHHHCT-GGGGGC-----------HHHHHHHHHHHHHH----S--SEEEEE
T ss_pred HHHHHHHHhhhccC--CcEEeccCCCCHHHHhcCCcChhhhc----------ChHHhhHHHHhhhcc---cc--cceEEe
Confidence 45556666666666 55555666555443222222211111 112334445544443 33 555555
Q ss_pred EeeC-C--h--HHHHHHHHhhcCCCEEEEecCCCCh-hhhhhhhcccchHHHHhcCCCCCeeh-hhHHHH
Q 030672 100 VGCG-D--A--KDVICGTVEKLEADTLVMGSHGYGF-IKRYKQLILAALSFQFLPNSQPSRLF-GDLILF 162 (173)
Q Consensus 100 ~~~g-~--~--~~~I~~~a~~~~~dllV~G~~~~~~-~~~~~~~~~gs~~~~ll~~~~~pvL~-~~~~~~ 162 (173)
++.| + . ...+++...+.+++.|.+=.+.+.. ..+. ..=.....+....++||+. |+.--.
T Consensus 129 iR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~---a~w~~i~~i~~~~~ipvi~NGdI~s~ 195 (309)
T PF01207_consen 129 IRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGP---ADWEAIAEIKEALPIPVIANGDIFSP 195 (309)
T ss_dssp EESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS------HHHHHHCHHC-TSEEEEESS--SH
T ss_pred cccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcc---cchHHHHHHhhcccceeEEcCccCCH
Confidence 5555 2 2 4677788889999999985543221 1110 0111235677888899998 655433
No 225
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=42.02 E-value=25 Score=22.09 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=34.9
Q ss_pred HHHHhcCCceEEEEEEe-eCCh--HH---HHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 85 AVYRNFQNNIHVKRVVG-CGDA--KD---VICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~-~g~~--~~---~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
+.+++.| +++...+. .+.+ .+ .+.+..++.++|+||.-..+...... -.|-..+++.-...+|.+
T Consensus 24 ~~L~~~G--i~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 24 KFLKEHG--IEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHTT----EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT----HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHcC--CCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc----CCcHHHHHHHHHcCCCCc
Confidence 4455677 77433322 3333 23 49999999999988887655332221 134445555555666553
No 226
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=41.88 E-value=48 Score=22.84 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
++++++.+++.| ++++..-......+.+.+.++ ++|.|.++-..
T Consensus 2 ~~~~~~~f~~~g--~~v~~l~~~~~~~~~~~~~i~--~ad~I~~~GG~ 45 (154)
T PF03575_consen 2 VEKFRKAFRKLG--FEVDQLDLSDRNDADILEAIR--EADAIFLGGGD 45 (154)
T ss_dssp HHHHHHHHHHCT---EEEECCCTSCGHHHHHHHHH--HSSEEEE--S-
T ss_pred HHHHHHHHHHCC--CEEEEEeccCCChHHHHHHHH--hCCEEEECCCC
Confidence 456777777888 776555555555668888888 99999997543
No 227
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=41.84 E-value=27 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=21.0
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+-.+.|+++|++.++||+|+|...
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcH
Confidence 447899999999999999999754
No 228
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.44 E-value=1.6e+02 Score=22.59 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCCChh--hhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFI--KRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~~~~--~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. ++++-..+...+..+ +..+.+++.++|-+++........ .. +-.--..++..++.
T Consensus 57 ~~~~~~~~~~~~~---~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~-----i~~~~~~ia~~~~~ 128 (292)
T PRK03170 57 EELIRAVVEAVNG---RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEG-----LYQHFKAIAEATDL 128 (292)
T ss_pred HHHHHHHHHHhCC---CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHH-----HHHHHHHHHhcCCC
Confidence 3445555554431 255555555444444 444778999999998876543221 22 22334667777889
Q ss_pred CeehhhHH
Q 030672 153 SRLFGDLI 160 (173)
Q Consensus 153 pvL~~~~~ 160 (173)
|+++-..+
T Consensus 129 pv~lYn~P 136 (292)
T PRK03170 129 PIILYNVP 136 (292)
T ss_pred CEEEEECc
Confidence 99875443
No 229
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=41.39 E-value=1.6e+02 Score=23.89 Aligned_cols=31 Identities=3% Similarity=-0.034 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
...+++.+++|+++|+..+. .+|+++|=...
T Consensus 167 r~~~eRIar~AF~~A~~r~r-kkVt~v~KaNv 197 (360)
T PLN00123 167 KFCSERIAKYAFEYAYLNNR-KKVTAVHKANI 197 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcEEEEECCcc
Confidence 35688999999999977642 46888876543
No 230
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=41.30 E-value=1.9e+02 Score=23.39 Aligned_cols=25 Identities=4% Similarity=0.014 Sum_probs=17.4
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.....+++.+++.+.+.+.+|+.+-
T Consensus 245 ~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 245 FHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECcc
Confidence 4566677777777777777776553
No 231
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=41.16 E-value=1.6e+02 Score=22.53 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHH--HHHHHhhcCCCEEEEecCCCChh--hhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFI--KRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllV~G~~~~~~~--~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+...+..+. +.+.+++.++|-+++........ .. +-.--..+...+..
T Consensus 54 ~~~~~~~~~~~~~---~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~-----i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 54 KKVIEFVVDLVNG---RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEG-----LYQHFKAIAEEVDL 125 (285)
T ss_pred HHHHHHHHHHhCC---CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHH-----HHHHHHHHHhcCCC
Confidence 3445555554432 2555554443344443 44778999999999886543221 22 22234566777889
Q ss_pred CeehhhHHH
Q 030672 153 SRLFGDLIL 161 (173)
Q Consensus 153 pvL~~~~~~ 161 (173)
||++-..+.
T Consensus 126 pi~lYn~P~ 134 (285)
T TIGR00674 126 PIILYNVPS 134 (285)
T ss_pred CEEEEECcH
Confidence 998755443
No 232
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=41.16 E-value=1e+02 Score=24.69 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=43.0
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCC-CChhhhh--------------hhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHG-YGFIKRY--------------KQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~-~~~~~~~--------------~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-..+ ....++++.|++.+..+|+..+.+ .....+- + ..+......+..++.+||-+
T Consensus 13 yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~VPV~l 90 (340)
T cd00453 13 FALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGA-ISGAHHVHQMAEHYGVPVIL 90 (340)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhH-HHHHHHHHHHHHHCCCCEEE
Confidence 4455555555 778999999999999999998773 2111110 0 23666778888899999987
No 233
>PRK11914 diacylglycerol kinase; Reviewed
Probab=40.63 E-value=1.3e+02 Score=23.31 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=21.4
Q ss_pred HHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEe
Q 030672 83 AEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G 124 (173)
..+.+++.+ .++....... .-...+.+.+.+.++|+||+.
T Consensus 31 ~~~~l~~~g--~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~ 71 (306)
T PRK11914 31 AIARLHHRG--VDVVEIVGTDAHDARHLVAAALAKGTDALVVV 71 (306)
T ss_pred HHHHHHHcC--CeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 334445555 5555443332 335566655656777876654
No 234
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=40.45 E-value=72 Score=27.03 Aligned_cols=90 Identities=9% Similarity=-0.013 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCE--EEEecCCCChhhhhhhhcccchHHHHhcCCCC
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADT--LVMGSHGYGFIKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dl--lV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
..+++++...+.+++.+ +-++-...-.-+.++.|+++..+..+.. ..+|...+.+-.++- .-.-.-+-+=.++..+
T Consensus 349 Kl~~l~eilke~~~k~~-~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMs-QkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 349 KLEKLREILKEQLEKNG-DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMS-QKEQKEIIDQFRKGEY 426 (542)
T ss_pred cHHHHHHHHHHHHhcCC-CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccC-HHHHHHHHHHHhcCCc
Confidence 34555666666665554 3334433334588999999999999999 788965554422210 0112223444678899
Q ss_pred CeehhhHHHHHHhh
Q 030672 153 SRLFGDLILFQILQ 166 (173)
Q Consensus 153 pvL~~~~~~~~~~~ 166 (173)
.||+.-|+.+-+|+
T Consensus 427 nVLVaTSVgEEGLD 440 (542)
T COG1111 427 NVLVATSVGEEGLD 440 (542)
T ss_pred eEEEEcccccccCC
Confidence 99998888777765
No 235
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=40.42 E-value=1.1e+02 Score=20.14 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=36.8
Q ss_pred cCCceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEEecC--CCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 90 FQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSH--GYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 90 ~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~G~~--~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.| ++++.. ..| .-...|.+..++..+|+||--.. +..+... .|-.-.+..-...+|++-
T Consensus 44 ~G--i~v~~v-k~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~~-----dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 44 TG--LTVNRM-KSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHEP-----DVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hC--CcEEEE-ecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCcccc-----cHHHHHHHHHHcCCCEEE
Confidence 45 777766 431 22366999999999999988755 4333122 344455556666777654
No 236
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=39.86 E-value=2e+02 Score=23.21 Aligned_cols=130 Identities=11% Similarity=0.038 Sum_probs=67.7
Q ss_pred CcEEEEEecC-ChH-HHHHHHHHHhhcCCCC--CCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHH-HHHHHHHHHH
Q 030672 5 ERRVVVAVDE-SEE-SMHALSWCLNNLFSPD--TNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVE-KYASESVNSV 79 (173)
Q Consensus 5 ~~~ILv~vd~-s~~-s~~al~~A~~la~~~~--~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (173)
-++.||.+-. |-. -+.+++||..+..... .+.-+.++.++...|-.. .++-+....++.....+ ..--..++++
T Consensus 52 d~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~-~gwkGli~DP~ldgs~~i~~GL~~~R~l 130 (353)
T PRK12755 52 DDRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTT-VGWKGLINDPHLDGSFDIEEGLRIARKL 130 (353)
T ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCC-cCCcCCCCCccccccccHHHHHHHHHHH
Confidence 3456666654 222 3568888888755421 002344667665544332 33333332232221111 1111222333
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+ ..+.| .++-+++..-...+-+.++ +|++.+|++.--... -..++..+.+||.|
T Consensus 131 l~~----~~e~G--lp~atE~ld~~~~~y~~Dl-----vs~~aIGARt~esq~----------hre~aSgl~~PVgf 186 (353)
T PRK12755 131 LLD----LVELG--LPLATEALDPISPQYLGDL-----ISWGAIGARTTESQT----------HREMASGLSMPVGF 186 (353)
T ss_pred HHH----HHHhC--CCEEEEecCcccHHHHHhh-----hhheeeccchhcCHH----------HHHHhcCCCCeeEe
Confidence 222 44566 8888888887545444443 567888886533222 25677778899988
No 237
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.74 E-value=1.7e+02 Score=22.39 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEE-EEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTL-VMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll-V~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+.+.++++| +.....+....+.+.|...++. ..+.| +++..|.++.......-.......+=..+.+||++|-
T Consensus 133 ~~~~~~~~~g--l~~I~lvap~t~~eri~~i~~~-s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGf 207 (258)
T PRK13111 133 ELRAAAKKHG--LDLIFLVAPTTTDERLKKIASH-ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGF 207 (258)
T ss_pred HHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHh-CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEc
Confidence 4444455566 4444433334444444444443 33333 3344443333210000122233444556789999854
No 238
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=39.68 E-value=1.6e+02 Score=22.16 Aligned_cols=49 Identities=6% Similarity=0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCCh--HHHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++...+.+.+++.| +.+......+++ ....++.....++|-+|++...
T Consensus 42 ~~~~~~i~~~~~~~G--~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~ 92 (295)
T PRK10653 42 VSLKDGAQKEADKLG--YNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 (295)
T ss_pred HHHHHHHHHHHHHcC--CeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 345666666667777 666554333344 3345555667789988877543
No 239
>PRK08005 epimerase; Validated
Probab=39.41 E-value=1.3e+02 Score=22.20 Aligned_cols=46 Identities=9% Similarity=-0.112 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
..++.+.+++.| ..+-..+--+.+.+.+..+.. .+|+|.+=+...+
T Consensus 95 ~~~~l~~Ik~~G--~k~GlAlnP~Tp~~~i~~~l~--~vD~VlvMsV~PG 140 (210)
T PRK08005 95 PSEILADIRAIG--AKAGLALNPATPLLPYRYLAL--QLDALMIMTSEPD 140 (210)
T ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHHHH--hcCEEEEEEecCC
Confidence 445556666777 777777777899999999998 8887766554433
No 240
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=39.27 E-value=1.7e+02 Score=22.60 Aligned_cols=75 Identities=11% Similarity=-0.007 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHH--HHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC-CCCe
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS-QPSR 154 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~-~~pv 154 (173)
++++.+.+.+. + ++++-..+...+..+. +.+.|++.++|-+++.......... --+-..-..+...+ ..||
T Consensus 57 ~l~~~~~~~~~--g-~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~---~~l~~~f~~ia~a~~~lpv 130 (294)
T TIGR02313 57 QAIENAIDQIA--G-RIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQ---EALYDHFAEVADAVPDFPI 130 (294)
T ss_pred HHHHHHHHHhC--C-CCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCH---HHHHHHHHHHHHhccCCCE
Confidence 34444444432 2 2666555554455444 5578999999999998775433211 01223345566777 7888
Q ss_pred ehhh
Q 030672 155 LFGD 158 (173)
Q Consensus 155 L~~~ 158 (173)
++=.
T Consensus 131 ~iYn 134 (294)
T TIGR02313 131 IIYN 134 (294)
T ss_pred EEEe
Confidence 8743
No 241
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=39.17 E-value=1.3e+02 Score=22.16 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
..+..+.+++.| ..+-..+.-|.+.+.|..++. ..|++.+-+-..++-.
T Consensus 101 ~~~lv~~ir~~G--mk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGG 149 (224)
T KOG3111|consen 101 PAELVEKIREKG--MKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGG 149 (224)
T ss_pred HHHHHHHHHHcC--CeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCch
Confidence 455666677777 888899999999999999999 8888877665554433
No 242
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=39.14 E-value=1.6e+02 Score=22.63 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+.+.+.++++| +.....+.-..+.+-|...++...-=+-+|+..|-++.+..+..-+......+=.++..|+.+|
T Consensus 133 ~~~~~~~~~~~g--i~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG 208 (263)
T CHL00200 133 SDYLISVCNLYN--IELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG 208 (263)
T ss_pred HHHHHHHHHHcC--CCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE
Confidence 344555566676 6666666666667777777773332244445555444332100012222333335678888874
No 243
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=39.13 E-value=1.7e+02 Score=22.03 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
..++++...+.+ ..+...+.-| ...+-...+.+.++|.+|+|+.
T Consensus 166 I~~lr~~~~~~~--~~~~IeVDGG-I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 166 VIQVENRLGNRR--VEKLISIDGS-MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHhcC--CCceEEEECC-CCHHHHHHHHHCCCCEEEEChh
Confidence 444445555555 5555555555 3444555677789999999964
No 244
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.94 E-value=1.9e+02 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=9.0
Q ss_pred hHHHHHHHHhhcCCCEEEEe
Q 030672 105 AKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 105 ~~~~I~~~a~~~~~dllV~G 124 (173)
....+++.+++.+.+..+++
T Consensus 207 ~~~~~~~~~~~~G~~~~~~~ 226 (351)
T cd06334 207 MNPVAIKEAKRVGLDDKFIG 226 (351)
T ss_pred hHHHHHHHHHHcCCCceEEE
Confidence 33444444444444444443
No 245
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=38.82 E-value=1.2e+02 Score=20.24 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEEe
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~G 124 (173)
.+.+++.| .++.......|-.+.|.+..++ .++|+||..
T Consensus 24 ~~~l~~~G--~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 24 AELLTELG--IEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred HHHHHHCC--CeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 34455677 6666555555555555544332 268988873
No 246
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=38.74 E-value=50 Score=24.23 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhc---CCCEEEEecCCCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKL---EADTLVMGSHGYG 129 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~---~~dllV~G~~~~~ 129 (173)
.+.+++.+++.| ..-...+..|+..+.+-+...+. .+|+|++-.....
T Consensus 83 ~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~ 133 (205)
T PF01596_consen 83 AEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRN 133 (205)
T ss_dssp HHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGG
T ss_pred HHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccc
Confidence 444555555566 44456667799988888887755 5999999876543
No 247
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=38.69 E-value=99 Score=29.35 Aligned_cols=54 Identities=11% Similarity=0.023 Sum_probs=38.3
Q ss_pred CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC-CCCCeehhhHHH
Q 030672 103 GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN-SQPSRLFGDLIL 161 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~-~~~pvL~~~~~~ 161 (173)
..|.+.|++.++++++|+|.+...-...... +..+.+.+-+. ..+||++|+...
T Consensus 788 ~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~-----m~~~i~~L~~~g~~v~v~vGGa~~ 842 (1229)
T PRK09490 788 MVPAEKILETAKEENADIIGLSGLITPSLDE-----MVHVAKEMERQGFTIPLLIGGATT 842 (1229)
T ss_pred CCCHHHHHHHHHHhCCCEEEEcCcchhhHHH-----HHHHHHHHHhcCCCCeEEEEeecc
Confidence 3678999999999999999998655544444 34445555333 468999977553
No 248
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=38.59 E-value=1.2e+02 Score=24.33 Aligned_cols=28 Identities=4% Similarity=-0.048 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|++.. .+|+++|=..
T Consensus 164 ~~~eRi~r~Af~~A~~rr--~kVt~v~KaN 191 (352)
T TIGR02089 164 KGVERIMRFAFELAQKRR--KHLTSATKSN 191 (352)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEeCCc
Confidence 468899999999998875 7888887644
No 249
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=38.56 E-value=1.1e+02 Score=19.64 Aligned_cols=60 Identities=10% Similarity=-0.048 Sum_probs=37.9
Q ss_pred hcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 89 NFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.| ++++...........|.+..++.++|+||--..+... . -.|-..++..-...+|++.
T Consensus 41 ~~g--i~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~-~-----~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 41 EAG--IPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA-I-----RDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HcC--CeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc-C-----ccHHHHHHHHHHhCCCEEe
Confidence 355 6655544432334779999999999999997544331 1 1344456666667788774
No 250
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.38 E-value=1.8e+02 Score=22.42 Aligned_cols=75 Identities=8% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHH--HHHHHhhcCCCEEEEecCCCChh--hhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGFI--KRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllV~G~~~~~~~--~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+. + .+++-..+...+..+. ..+.+++.++|-+++-....... .. +-.--..++..++.|
T Consensus 61 ~~~~~~~~~~~--~-~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~-----l~~~f~~va~a~~lP 132 (293)
T PRK04147 61 QVLEIVAEEAK--G-KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEE-----ICDYYREIIDSADNP 132 (293)
T ss_pred HHHHHHHHHhC--C-CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHH-----HHHHHHHHHHhCCCC
Confidence 34444444443 1 2555555544445444 44778999999999987654221 22 222235567778899
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++=..+
T Consensus 133 v~iYn~P 139 (293)
T PRK04147 133 MIVYNIP 139 (293)
T ss_pred EEEEeCc
Confidence 9885443
No 251
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=38.32 E-value=1.7e+02 Score=22.62 Aligned_cols=71 Identities=18% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.... .+++-..+.. +..+ +..+.+++.++|-+++-...... -.. +-.--..+...++.
T Consensus 61 ~~v~~~~~~~~~g---~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~-----i~~~f~~v~~a~~~ 131 (296)
T TIGR03249 61 EQVVEIAVSTAKG---KVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEG-----LYAHVEAVCESTDL 131 (296)
T ss_pred HHHHHHHHHHhCC---CCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH-----HHHHHHHHHhccCC
Confidence 3444444444322 2555555543 4443 45578899999999887654322 122 22233556667788
Q ss_pred Ceeh
Q 030672 153 SRLF 156 (173)
Q Consensus 153 pvL~ 156 (173)
||++
T Consensus 132 pvil 135 (296)
T TIGR03249 132 GVIV 135 (296)
T ss_pred CEEE
Confidence 8775
No 252
>PLN02476 O-methyltransferase
Probab=38.32 E-value=1.1e+02 Score=23.70 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHh---hcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVE---KLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~---~~~~dllV~G~~~~ 128 (173)
+..+.+++.+++.| +.-...+..|+..+.+-+... ...+|++++.....
T Consensus 154 e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~ 205 (278)
T PLN02476 154 NSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKR 205 (278)
T ss_pred HHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHH
Confidence 34566667777787 665677888998887766543 24799999987654
No 253
>PRK03670 competence damage-inducible protein A; Provisional
Probab=38.26 E-value=1.8e+02 Score=22.16 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh---cCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+.+.+.+.| +++......+|-.+.|.+..++ ..+|+||+. .|-+.-. ..-+.+.+.+-...|+.+.+-
T Consensus 25 la~~L~~~G--~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt-GGlGpt~------dD~T~eava~a~g~~l~~~~e 95 (252)
T PRK03670 25 IAQKLTEKG--YWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS-GGLGPTH------DDVTMLAVAEALGRELVLCED 95 (252)
T ss_pred HHHHHHHCC--CEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC-CCccCCC------CCchHHHHHHHhCCCCcCCHH
Confidence 344456677 8888888888777777776543 257888875 2222211 222455566667777666444
Q ss_pred H
Q 030672 160 I 160 (173)
Q Consensus 160 ~ 160 (173)
.
T Consensus 96 ~ 96 (252)
T PRK03670 96 C 96 (252)
T ss_pred H
Confidence 3
No 254
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=38.20 E-value=1.3e+02 Score=23.39 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=42.1
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhcCCC--CCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLPNSQ--PSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~~~~--~pvL~ 156 (173)
.-+=..-... ....++++.|++.+..+|+..+.+.... .+. ..+......+..++. +||-+
T Consensus 18 yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~VPV~l 82 (285)
T PRK07709 18 YAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGF--KTVVAMVKALIEEMNITVPVAI 82 (285)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCH--HHHHHHHHHHHHHcCCCCcEEE
Confidence 4444454445 7789999999999999999987764322 110 235667788888765 68766
No 255
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=38.16 E-value=1.4e+02 Score=21.05 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEEe
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~G 124 (173)
.+.+.+.| .++......+|-.+.|.+..++ ..+|+||..
T Consensus 25 ~~~L~~~G--~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 25 AKELAELG--IEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred HHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 34455677 7777776777655555555432 368988885
No 256
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.68 E-value=1.8e+02 Score=22.11 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHh--cCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecC
Q 030672 78 SVMNRAEAVYRN--FQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 78 ~~l~~~~~~~~~--~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~ 126 (173)
.+++.+.+.+.+ .+ +.+......+++. ..+++.+..+++|-+|+...
T Consensus 16 ~~~~gi~~~a~~~~~g--~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~ 66 (303)
T cd01539 16 LVRKNLEDIQKENGGK--VEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLV 66 (303)
T ss_pred HHHHHHHHHHHhhCCC--eeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 344555555555 55 5555544444553 34556677889998888643
No 257
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.67 E-value=2.1e+02 Score=22.88 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
..+.|..+-+.+.| +...-++++..+... ...+....+.+.++.+.|+++| +++-..
T Consensus 106 ~~~~~sve~a~~~G--AdAVk~lv~~~~d~~-------------------~~~~~~~~~~l~rv~~ec~~~g--iPlllE 162 (340)
T PRK12858 106 LLDNWSVRRIKEAG--ADAVKLLLYYRPDED-------------------DAINDRKHAFVERVGAECRAND--IPFFLE 162 (340)
T ss_pred ccccccHHHHHHcC--CCEEEEEEEeCCCcc-------------------hHHHHHHHHHHHHHHHHHHHcC--CceEEE
Confidence 34555555566666 555555554432111 1123445567888888899998 776554
Q ss_pred Eee---C-----------ChHHHHHH----HHh-hcCCCEEEEecCCCC-hhhhhh--hhccc-----chHHHHhcCCCC
Q 030672 100 VGC---G-----------DAKDVICG----TVE-KLEADTLVMGSHGYG-FIKRYK--QLILA-----ALSFQFLPNSQP 152 (173)
Q Consensus 100 ~~~---g-----------~~~~~I~~----~a~-~~~~dllV~G~~~~~-~~~~~~--~~~~g-----s~~~~ll~~~~~ 152 (173)
+.. | ...+.|.. .++ +.++|++=+-..+.. ...++- ..... ..-..+...+++
T Consensus 163 ~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~ 242 (340)
T PRK12858 163 PLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDL 242 (340)
T ss_pred EeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCC
Confidence 321 1 11223333 333 589999988765432 111100 00000 224566777999
Q ss_pred Ceeh
Q 030672 153 SRLF 156 (173)
Q Consensus 153 pvL~ 156 (173)
|+++
T Consensus 243 P~vv 246 (340)
T PRK12858 243 PFIF 246 (340)
T ss_pred CEEE
Confidence 9998
No 258
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.63 E-value=68 Score=24.22 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
...+.|.+.+.+.+.|.+.+|.+..-..+. .-.+..++-.+..+||.+
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~-----~~~~v~~ik~~~~lPvil 75 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEEN-----VDNVVEAIKERTDLPVIL 75 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHH-----HHHHHHHHHhhcCCCEEE
Confidence 446789999999999999998654332222 334455666588899887
No 259
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=37.26 E-value=60 Score=28.14 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHHH
Q 030672 105 AKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQI 164 (173)
Q Consensus 105 ~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~~ 164 (173)
-.+++.++++++++.+||+|..-. +.. -....+++..+|++=|....+|+
T Consensus 56 d~~ala~f~~e~~I~lVvvGPE~P--L~~--------Gl~~~l~~~gi~~FGPs~~aAql 105 (788)
T KOG0237|consen 56 DFEALASFCKEHNINLVVVGPELP--LVA--------GLADVLRSAGIPCFGPSKQAAQL 105 (788)
T ss_pred hHHHHHHHHHHcceeEEEECCchh--hhh--------hhhhhhhccCcceeCchHHHHHh
Confidence 467888899999999999986542 111 12345566677777666666664
No 260
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=37.22 E-value=1.8e+02 Score=21.79 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=57.5
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
++++.+++.+.|.-|+.+|... + ..+.++++.+.......+.. . -++.+..+
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~---~---~v~~L~t~~~~~~~s~~~H~----~------------------~~~~~~~q 53 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE---H---EVISLVNIMPENEESYMFHG----V------------------NAHLTDLQ 53 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh---C---eeEEEEEEecCCCCcccccc----c------------------CHHHHHHH
Confidence 4678999999999999998886 2 36667777765432111100 0 12233334
Q ss_pred HHhcCCceEEEEEEee---CChHHHHHHHHhhcCCCEEEEecCCCCh
Q 030672 87 YRNFQNNIHVKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGF 130 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~---g~~~~~I~~~a~~~~~dllV~G~~~~~~ 130 (173)
++..| ++....... ++-.+.+.+..++.+++.+|.|.--...
T Consensus 54 A~alg--ipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~ 98 (223)
T TIGR00290 54 AESIG--IPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIYSEY 98 (223)
T ss_pred HHHcC--CCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcccHH
Confidence 44455 665332222 3456677777788899999999765433
No 261
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=37.18 E-value=2e+02 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+++|++++.-.|.-++..+.+. .+ .++.++|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG--~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IG--DRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hC--CcEEEEEecCC
Confidence 5899999988888777766652 35 68999999554
No 262
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=37.15 E-value=44 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcCCCEEEEecCC
Q 030672 106 KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+.+.++++++++++|++|..+
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~ 73 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNS 73 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SS
T ss_pred HHHHHHHHHHcCCeEEEEcCCC
Confidence 3556667777788888885443
No 263
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=37.03 E-value=2.1e+02 Score=22.53 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeC-C---hHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccc-----hHHHH
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG-D---AKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAA-----LSFQF 146 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~---~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs-----~~~~l 146 (173)
..++++..++.... + +++...++.| + ....+.+.+++.++|.|.+-.+.+.. + +.|. ....+
T Consensus 119 ~~eiv~avr~~~~~-~--~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~----y~g~~~~~~~i~~i 189 (312)
T PRK10550 119 IYQGAKAMREAVPA-H--LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--G----YRAEHINWQAIGEI 189 (312)
T ss_pred HHHHHHHHHHhcCC-C--cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--C----CCCCcccHHHHHHH
Confidence 44455555544321 2 4455555544 2 35677788889999999995443321 1 2232 35566
Q ss_pred hcCCCCCeeh-hhH
Q 030672 147 LPNSQPSRLF-GDL 159 (173)
Q Consensus 147 l~~~~~pvL~-~~~ 159 (173)
-....+||+. |+.
T Consensus 190 k~~~~iPVi~nGdI 203 (312)
T PRK10550 190 RQRLTIPVIANGEI 203 (312)
T ss_pred HhhcCCcEEEeCCc
Confidence 6777899988 554
No 264
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=36.41 E-value=64 Score=18.84 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=19.8
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFS 31 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~ 31 (173)
++|.++.|.+...+.+..+..+.+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 56899999988888877777666554
No 265
>PF13155 Toprim_2: Toprim-like
Probab=36.37 E-value=1e+02 Score=18.93 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=24.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSP 32 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~ 32 (173)
+.++|.+++|.++....+.+.........
T Consensus 46 ~~~~i~l~~DnD~aG~~~~~~~~~~l~~~ 74 (96)
T PF13155_consen 46 PYKKIVLAFDNDEAGRKAAEKLQKELKEE 74 (96)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 44789999999999999888888776654
No 266
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=36.12 E-value=1.8e+02 Score=21.65 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
+.++++...+.+ ..+...+.-| ...+-+..+.+.++|.+|+|+.
T Consensus 158 I~~l~~~~~~~~--~~~~IeVDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 158 LRAIRKKIDALG--KPIRLEIDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHhcC--CCeeEEEECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 444445544555 4555555555 3444555666779999999964
No 267
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.11 E-value=83 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEecC-ChHHHHHHHHHHhhcCCCCCCCeEEEE
Q 030672 1 MNTNERRVVVAVDE-SEESMHALSWCLNNLFSPDTNNTLVLL 41 (173)
Q Consensus 1 m~~~~~~ILv~vd~-s~~s~~al~~A~~la~~~~~~~~l~~l 41 (173)
||+++++|++.... .+.+...++....+++..+ ..+.+-
T Consensus 1 ~~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g--~~v~~~ 40 (296)
T PRK04539 1 MNSPFHNIGIVTRPNTPDIQDTAHTLITFLKQHG--FTVYLD 40 (296)
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCC--CEEEEe
Confidence 89999999998875 4566667777777666667 676654
No 268
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=36.10 E-value=77 Score=23.92 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.+.+.++|++++|.+.. .++.|++. + +.+.+.|
T Consensus 32 ~~~~v~~I~~alD~t~~---vi~~Ai~~----~--~dlIitH 64 (249)
T TIGR00486 32 GNEEVKKVVVAVDASES---VADEAVRL----G--ADLIITH 64 (249)
T ss_pred CCcccCEEEEEecCCHH---HHHHHHHC----C--CCEEEEc
No 269
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.03 E-value=1.8e+02 Score=21.53 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~ 127 (173)
..++..+.+.+++.| ..+......+++.. ..++.....++|-||+....
T Consensus 15 ~~~~~~i~~~~~~~g--~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~ 65 (282)
T cd06318 15 AALTEAAKAHAKALG--YELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVD 65 (282)
T ss_pred HHHHHHHHHHHHHcC--CEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 445666666666777 66655433345532 45566777899999997543
No 270
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=35.66 E-value=1.6e+02 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=23.8
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
++||||+ ..++.+..+++.+.++ | .++.+++..+
T Consensus 2 ~~kvLi~-~~geia~~ii~a~~~~----G--i~~v~v~~~~ 35 (472)
T PRK07178 2 IKKILIA-NRGEIAVRIVRACAEM----G--IRSVAIYSEA 35 (472)
T ss_pred CcEEEEE-CCcHHHHHHHHHHHHc----C--CeEEEEeCCC
Confidence 6899998 6666666666666654 7 6777776644
No 271
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=35.50 E-value=1.7e+02 Score=21.05 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCCh--HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
.+.+.+++.+++.| +.+...-..+++ ....++.....++|.+|+......... .-..+.+..+|++
T Consensus 16 ~~~~g~~~~~~~~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~----------~~~~l~~~~ip~v 83 (264)
T cd01537 16 QVLKGIEEAAKAAG--YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT----------IVKLARKAGIPVV 83 (264)
T ss_pred HHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh----------HHHHhhhcCCCEE
Confidence 34455555555567 666655544444 334444445568999888654322111 1344556667776
Q ss_pred h
Q 030672 156 F 156 (173)
Q Consensus 156 ~ 156 (173)
+
T Consensus 84 ~ 84 (264)
T cd01537 84 L 84 (264)
T ss_pred E
Confidence 5
No 272
>PLN02858 fructose-bisphosphate aldolase
Probab=35.28 E-value=1.2e+02 Score=29.22 Aligned_cols=67 Identities=6% Similarity=-0.075 Sum_probs=47.3
Q ss_pred HHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 85 AVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+++.+ .-+=..-..+ ....++++.|++.+..+|+..+.+.-...+ .-+......+.+++.+||-+
T Consensus 1107 ~~A~~~~--yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~---~~~~~~~~~~a~~~~vpV~l 1174 (1378)
T PLN02858 1107 LNAEKGG--YAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG---IPLVSCCIAAAEQASVPITV 1174 (1378)
T ss_pred HHHHHCC--cEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC---HHHHHHHHHHHHHCCCCEEE
Confidence 3344444 5555555556 778999999999999999998766432222 22555677788899999887
No 273
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.21 E-value=2e+02 Score=22.77 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCCh----HHHHHHHHhhcCCCEEEE
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA----KDVICGTVEKLEADTLVM 123 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV~ 123 (173)
..++..+.+++.+ +.+.+....++| .+.+.+.++++++|.||-
T Consensus 37 ~~~~v~~~L~~~~--i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 37 VGAKIEESLAAAG--IDARFEVFGGECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred HHHHHHHHHHhCC--CeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE
Confidence 4555566666666 665544455544 456667778889997653
No 274
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.11 E-value=1.8e+02 Score=23.02 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCCh----HHHHHHHHhhcCCCEEE-Ee
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDA----KDVICGTVEKLEADTLV-MG 124 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV-~G 124 (173)
.+++.+.+++.+ +.+.+.+..|+| .+.+.+.+++.++|.|| +|
T Consensus 38 ~~~v~~~l~~~~--i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 85 (349)
T cd08550 38 RPRFEAALAKSI--IVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVG 85 (349)
T ss_pred HHHHHHHHHhcC--CeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 345555555556 655555555553 45566778888999876 45
No 275
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=34.69 E-value=2e+02 Score=21.78 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeCCh--HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCC
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
..++++.+.+.+. + .+++-..+...+. .-...+.+++.++|-+++.......... .-+-..-..++..+..|
T Consensus 52 r~~l~~~~~~~~~--~-~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~---~~~~~~~~~ia~~~~~p 125 (281)
T cd00408 52 RKEVIEAVVEAVA--G-RVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQ---EGIVAHFKAVADASDLP 125 (281)
T ss_pred HHHHHHHHHHHhC--C-CCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH---HHHHHHHHHHHhcCCCC
Confidence 3445555555543 1 2555555544444 3445567899999999998765432211 11233345667778899
Q ss_pred eehhhH
Q 030672 154 RLFGDL 159 (173)
Q Consensus 154 vL~~~~ 159 (173)
+++-..
T Consensus 126 i~iYn~ 131 (281)
T cd00408 126 VILYNI 131 (281)
T ss_pred EEEEEC
Confidence 987433
No 276
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=34.69 E-value=2.5e+02 Score=22.79 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=30.9
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCC-----hhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYG-----FIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~-----~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
....++.+.+.+.++|+|++-.+..+ +...+. ...++.+...+||+.|+
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~------~l~~~i~~~~IPVI~G~ 195 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPL------NLKEFIGELDVPVIAGG 195 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHH------HHHHHHHHCCCCEEEeC
Confidence 35778999999999999998532211 001110 13456677789998743
No 277
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=34.65 E-value=98 Score=19.54 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCceEEEEEEeeCC-hHHHHH-HHHhhcCCCEEEEecCCCChhhh
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCGD-AKDVIC-GTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g~-~~~~I~-~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
+.+++.+++.| +++........ +...+. +... ++|++|+.........|
T Consensus 19 ~~L~~aa~~~g--~~~~ve~~~~~g~~~~l~~~~i~--~Ad~vi~~~~~~~~~~r 69 (96)
T cd05569 19 EALEKAAKKLG--WEIKVETQGSLGIENELTAEDIA--EADAVILAADVPVDDER 69 (96)
T ss_pred HHHHHHHHHCC--CeEEEEEecCcCccCcCCHHHHh--hCCEEEEecCCCCchhh
Confidence 44555666677 77666655542 223332 3445 89999998766544444
No 278
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=34.54 E-value=2e+02 Score=21.60 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
...+++++..+.+ ..+...+.-|- ..+-+..+.+.++|.+|+|+.
T Consensus 155 KI~~lr~~~~~~~--~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 155 KIAELKALRERNG--LEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHhcC--CCeEEEEECCC-CHHHHHHHHHcCCCEEEEChH
Confidence 3445555555555 56666666663 333444566679999999964
No 279
>PRK00919 GMP synthase subunit B; Validated
Probab=34.49 E-value=2.3e+02 Score=22.32 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=29.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
++++|++++.-.|.-++.++.+. .| .+++++++....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG--~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IG--DRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hC--CeEEEEEEECCC
Confidence 78999999999888877776652 36 789999997653
No 280
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=34.47 E-value=2.1e+02 Score=21.79 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 030672 14 ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNN 93 (173)
Q Consensus 14 ~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (173)
+.......++.++++|+.++ ..| . ..+..+....++--....+++...+ ..--.+-.+...++..|
T Consensus 38 fHAGDp~~M~rtV~lA~e~g--V~I-G--AHPgyPDl~gFGRr~m~~~~~e~~a-------~~lYQiGAL~a~~~a~G-- 103 (252)
T COG1540 38 FHAGDPLTMRRTVRLAKENG--VAI-G--AHPGYPDLVGFGRREMALSPEELYA-------QVLYQIGALQAFARAQG-- 103 (252)
T ss_pred ccCCCHHHHHHHHHHHHHcC--Cee-c--cCCCCccccccCccccCCCHHHHHH-------HHHHHHHHHHHHHHhcC--
Confidence 34445667888888888877 332 2 2333333333332222233332222 22233455556666666
Q ss_pred eEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 94 IHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 94 v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..++.+--.| ..++.|++.+...+..|++||-.+.
T Consensus 104 ~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags 148 (252)
T COG1540 104 GVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGS 148 (252)
T ss_pred CeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcH
Confidence 5555544332 3468999999999999999998764
No 281
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=34.47 E-value=33 Score=23.61 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=31.3
Q ss_pred ChHHHHHHHHh-hcCCCEE--EEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVE-KLEADTL--VMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~-~~~~dll--V~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+.+.+.++.. ++|..++ |+++..+++-.. ++-.++.+.+++.+|+|.
T Consensus 58 ~Vp~~vi~FLn~~~Nr~~~rGViaSGN~NfG~~-----f~~Ag~~iS~k~~vPlLy 108 (141)
T COG1780 58 AVPKQVIRFLNNEHNRALCRGVIASGNRNFGDN-----FALAGDVISAKCGVPLLY 108 (141)
T ss_pred ccCHHHHHHhccccchhheEEEEecCCccHHHH-----HHHHHHHHHHHhCCCEEE
Confidence 44556666653 4555544 455444444443 777889999999999985
No 282
>PRK08392 hypothetical protein; Provisional
Probab=34.43 E-value=1.8e+02 Score=21.18 Aligned_cols=66 Identities=6% Similarity=-0.053 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccc--hHHHHhcCCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAA--LSFQFLPNSQPS 153 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs--~~~~ll~~~~~p 153 (173)
.+++..+.+.+.| +.++.-.....|...+++.+++.++ -+++|+..+.... +|. .+..+++++..+
T Consensus 138 ~~~~i~~~~~~~g--~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~------vg~~~~a~~~~~~~g~~ 205 (215)
T PRK08392 138 ELKEILDLAEAYG--KAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPED------VGNVSWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHhC--CEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHH------CCcHHHHHHHHHHcCCC
Confidence 3344555666666 5555544556777889999999986 5899987765422 332 345566665544
No 283
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.28 E-value=2.2e+02 Score=22.14 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCCh--HHHHHHHHhhcCCCEEEEecCCCChh--hhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEADTLVMGSHGYGFI--KRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~dllV~G~~~~~~~--~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.+.++.+.+.+.. .+++...+...+. +-++.+.|++.++|-+++-....... .+ +=..-..+...+..
T Consensus 60 ~~v~~~~v~~~~g---rvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~g-----l~~hf~~ia~a~~l 131 (299)
T COG0329 60 KEVLEAVVEAVGG---RVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEG-----LYAHFKAIAEAVDL 131 (299)
T ss_pred HHHHHHHHHHHCC---CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHH-----HHHHHHHHHHhcCC
Confidence 4455555555432 2555444444444 45556789999999999987765432 22 11223566677788
Q ss_pred Ceeh
Q 030672 153 SRLF 156 (173)
Q Consensus 153 pvL~ 156 (173)
|+++
T Consensus 132 Pvil 135 (299)
T COG0329 132 PVIL 135 (299)
T ss_pred CEEE
Confidence 8776
No 284
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=33.94 E-value=67 Score=25.85 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=36.1
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.+.+|-|..++.+.|--.|..++++|+..+. ++|.++++.-+
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-~~i~VlfiD~E 67 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGR-DKISVLFIDWE 67 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCC-CceEEEEEcch
Confidence 5678899999999999999999999999986 68988888543
No 285
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=33.85 E-value=1.9e+02 Score=25.70 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=34.0
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhhH
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGDL 159 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~~ 159 (173)
...+.+++.+.++++|++++.+...+.... ...+...|=... .++|++|..
T Consensus 620 ~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~-----~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 620 QTPEEAARQAVENDVHVVGVSSLAAGHKTL-----VPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccchhhHHH-----HHHHHHHHHhcCCCCcEEEEeCC
Confidence 457899999999999999998766554432 333444443332 367888743
No 286
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=33.72 E-value=1.9e+02 Score=21.25 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEee-C-C-----hHHHH---HHHHhhcCCCEEEEecCCCChhhhhhhhcccchHH
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGC-G-D-----AKDVI---CGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSF 144 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~-g-~-----~~~~I---~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~ 144 (173)
...+.+.++.+.+.+++ +++-..... | . ..+.| .+.+.+.++|.|-.... ++... ..
T Consensus 106 ~~~~~i~~v~~~~~~~g--~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~--~~~~~---------~~ 172 (235)
T cd00958 106 EMLEELARVAAEAHKYG--LPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT--GDAES---------FK 172 (235)
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC--CCHHH---------HH
Confidence 34445666666667777 554433322 1 0 11232 34477889999888532 22332 46
Q ss_pred HHhcCCCCCeeh-hh
Q 030672 145 QFLPNSQPSRLF-GD 158 (173)
Q Consensus 145 ~ll~~~~~pvL~-~~ 158 (173)
++.+.+++||++ |+
T Consensus 173 ~i~~~~~~pvv~~GG 187 (235)
T cd00958 173 EVVEGCPVPVVIAGG 187 (235)
T ss_pred HHHhcCCCCEEEeCC
Confidence 777888899988 44
No 287
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=33.71 E-value=1.6e+02 Score=20.41 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE 114 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~ 114 (173)
.....++..+..++++| +.+...-..| -|.+++++.++
T Consensus 65 pl~~vfe~v~~eA~~~G--v~v~gsElVGlvP~~Alldaa~ 103 (145)
T PF02971_consen 65 PLHRVFEEVKREAARYG--VPVVGSELVGLVPLDALLDAAE 103 (145)
T ss_dssp -HHHHHHHHHHHHHCTT----EEEEEEES-B-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhC--CCccceEEEccccHHHHHHHHH
Confidence 34567888888999999 9998888889 89999988655
No 288
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=33.63 E-value=1.4e+02 Score=19.57 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=11.3
Q ss_pred ChHHHHHHHHhh-cCCCEEEEec
Q 030672 104 DAKDVICGTVEK-LEADTLVMGS 125 (173)
Q Consensus 104 ~~~~~I~~~a~~-~~~dllV~G~ 125 (173)
...+.+.+.+.+ .++|+|.+..
T Consensus 25 ~~~~~~~~~~~~~~~pdiv~~S~ 47 (127)
T cd02068 25 LSADDIVEDIKELLKPDVVGISL 47 (127)
T ss_pred CCHHHHHHHHHHhcCCCEEEEee
Confidence 344455554444 5566665554
No 289
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=33.45 E-value=39 Score=28.83 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=19.8
Q ss_pred ChHHHHHHHHhhcCCCEEEEec
Q 030672 104 DAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~ 125 (173)
+..++|++.|++.++|||++|.
T Consensus 39 ~tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 39 VTFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHHhcCCcEEEecC
Confidence 3479999999999999999995
No 290
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=33.26 E-value=1.7e+02 Score=23.67 Aligned_cols=63 Identities=5% Similarity=-0.013 Sum_probs=43.2
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhh-h------------hhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRY-K------------QLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~-~------------~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.-+-..-... ....++++.|++.+..+|+..+.+.-.. .+. + ...+......+..++.+||-+
T Consensus 27 yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPVal 104 (357)
T TIGR01520 27 FAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVL 104 (357)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 4454454445 7789999999999999999987654211 100 0 011556777888899999987
No 291
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.23 E-value=2e+02 Score=21.30 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.++++...+.+ ..+...+.-| ...+=+..+.+.++|.+|+|+.
T Consensus 153 kI~~l~~~~~~~~--~~~~I~vdGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESG--RDIRLEIDGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcC--CCeeEEEECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 3445555555455 4455555445 3344445666789999999964
No 292
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=33.22 E-value=1.3e+02 Score=23.65 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=31.8
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+..+.++.++ ++|+||+|.... +..-. .+.=+-...-+++++.|+++
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P---~LlVpgI~eAL~~s~A~vV~ 220 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGP---ILALPGIREALRDKKAPVVA 220 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhh---hccchhHHHHHHhCCCCEEE
Confidence 45788999999 999999997553 33332 23334445566677777765
No 293
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=33.06 E-value=2.2e+02 Score=22.09 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHH--HHHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDV--ICGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~--I~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+.. +..+. ..+.+++.++|-+++....... -.. +-..-..+...++.
T Consensus 63 ~~~~~~~~~~~~~---~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~-----i~~~f~~va~~~~l 133 (303)
T PRK03620 63 SQVVRAAVETTAG---RVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEG-----LAAHVEAVCKSTDL 133 (303)
T ss_pred HHHHHHHHHHhCC---CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhCCC
Confidence 3345555444422 2555555542 44444 4467889999999987664322 122 22334566777888
Q ss_pred Ceeh
Q 030672 153 SRLF 156 (173)
Q Consensus 153 pvL~ 156 (173)
||++
T Consensus 134 pi~l 137 (303)
T PRK03620 134 GVIV 137 (303)
T ss_pred CEEE
Confidence 8876
No 294
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=32.87 E-value=3.1e+02 Score=23.33 Aligned_cols=106 Identities=13% Similarity=0.020 Sum_probs=60.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
..+++.++.|.--...+-+|..+ + -.+.++ |++..+.. ..++++.++..
T Consensus 360 gdviltyg~s~vV~~ill~A~~~----~--k~frVv-VVDSRP~~------------------------EG~~~lr~Lv~ 408 (556)
T KOG1467|consen 360 GDVLLTYGSSSVVNMILLEAKEL----G--KKFRVV-VVDSRPNL------------------------EGRKLLRRLVD 408 (556)
T ss_pred CCEEEEecchHHHHHHHHHHHHh----C--cceEEE-EEeCCCCc------------------------chHHHHHHHHH
Confidence 35677777777666666666655 4 455555 33443332 23445555444
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccc-hHHHHhcCCCCCeeh
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAA-LSFQFLPNSQPSRLF 156 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs-~~~~ll~~~~~pvL~ 156 (173)
.| +.+....+.+- .-|. ..++-|++|.+.--..+..+ -..|. -..-+.++-.+|||.
T Consensus 409 ----~G--inctYv~I~a~--syim-----~evtkvfLGahailsNG~vy-sR~GTa~valvAna~nVPVlV 466 (556)
T KOG1467|consen 409 ----RG--INCTYVLINAA--SYIM-----LEVTKVFLGAHAILSNGAVY-SRVGTACVALVANAFNVPVLV 466 (556)
T ss_pred ----cC--CCeEEEEehhH--HHHH-----HhcceeeechhhhhcCcchh-hhcchHHHHHHhcccCCCEEE
Confidence 45 88888887762 1222 36788999987532111111 11333 334557788999997
No 295
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.79 E-value=1.8e+02 Score=21.82 Aligned_cols=43 Identities=14% Similarity=0.010 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
..++.+.+++.| ..+-..+--+.+.+.+..+.. .+|+|.+=+.
T Consensus 97 ~~~~i~~Ik~~G--~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV 139 (229)
T PRK09722 97 AFRLIDEIRRAG--MKVGLVLNPETPVESIKYYIH--LLDKITVMTV 139 (229)
T ss_pred HHHHHHHHHHcC--CCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEE
Confidence 445556667777 777777777889999999999 7787666443
No 296
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=32.77 E-value=1.4e+02 Score=23.73 Aligned_cols=62 Identities=6% Similarity=-0.019 Sum_probs=39.8
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhh--hhhhcccchHHHHhcCC--CCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKR--YKQLILAALSFQFLPNS--QPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~--~~~~~~gs~~~~ll~~~--~~pvL~ 156 (173)
.-+-..-..+ ....+|++.|++.+..+|+..+.+.....+ .+ ..+......+..++ .+||-+
T Consensus 24 yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~-~~~~~~~~~~a~~a~~~VPV~l 90 (321)
T PRK07084 24 YAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLL-RYMAQGAVEYAKELGCPIPIVL 90 (321)
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHH-HHHHHHHHHHHHHcCCCCcEEE
Confidence 4444444445 789999999999999999998765422111 00 12444456667766 678766
No 297
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=32.65 E-value=2.3e+02 Score=21.84 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCC-CC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNS-QP 152 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~-~~ 152 (173)
++++.+.+.+. + .+++-..+...+.. -+..+.+++.++|-+++....... ... +-.--..+...+ +.
T Consensus 58 ~~~~~~~~~~~--~-~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~-----i~~yf~~v~~~~~~l 129 (290)
T TIGR00683 58 EIFRIAKDEAK--D-QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPE-----IKHYYDTIIAETGGL 129 (290)
T ss_pred HHHHHHHHHhC--C-CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH-----HHHHHHHHHhhCCCC
Confidence 34444444432 1 25555555444444 445578999999999997764322 122 112234455555 68
Q ss_pred Ceehhh
Q 030672 153 SRLFGD 158 (173)
Q Consensus 153 pvL~~~ 158 (173)
||++=.
T Consensus 130 pv~lYn 135 (290)
T TIGR00683 130 NMIVYS 135 (290)
T ss_pred CEEEEe
Confidence 887633
No 298
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=32.59 E-value=1.7e+02 Score=22.35 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 107 DVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+......+++++|++|+.+...... .-..++.++..+.+|.++
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~P-------GP~~ARE~l~~~~iP~Iv 92 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAAP-------GPKKAREILKAAGIPCIV 92 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCC-------CchHHHHHHHhcCCCEEE
Confidence 3455567899999999988764322 122478889988888776
No 299
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=32.53 E-value=73 Score=25.32 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=31.8
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+..+.++.++ ++|+||+|.... +..-.. +++....+.|.+ +..|++..
T Consensus 178 ~a~~eaveAI~--~AD~IviGPgSl~TSIlP~--Lllp~I~eaLr~-~~ap~i~v 227 (323)
T COG0391 178 SAAPEAVEAIK--EADLIVIGPGSLFTSILPI--LLLPGIAEALRE-TVAPIVYV 227 (323)
T ss_pred CCCHHHHHHHH--hCCEEEEcCCccHhhhchh--hchhHHHHHHHh-CCCCEEEe
Confidence 55678899999 999999997553 322221 345555554444 77777653
No 300
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=32.40 E-value=1.7e+02 Score=21.83 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh---cCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllV~G~~~ 127 (173)
+..+.+++.+++.| +.-...+..|+..+.+-+...+ ..+|++++....
T Consensus 104 ~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k 154 (234)
T PLN02781 104 EAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADK 154 (234)
T ss_pred HHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCH
Confidence 34556666666677 6555677889888776665433 579999998643
No 301
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=32.34 E-value=69 Score=25.23 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=31.7
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+..+.+++++ ++|+||+|.... +..-. .++=.-...-++++++|+.+..
T Consensus 163 ~~~~~~l~AI~--~ADlIvlgPGSlyTSI~P---~Llv~gi~eAi~~s~a~kV~V~ 213 (309)
T cd07044 163 SPSREVLEAIE--KADNIVIGPGSLYTSILP---NISVPGIREALKKTXAKKVYVS 213 (309)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhhh---hcCcHhHHHHHHhcCCCeEEEC
Confidence 45678889999 999999996543 22222 2233334455566788877643
No 302
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=32.23 E-value=2.2e+02 Score=21.38 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=57.2
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeE-EEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTL-VLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
++++-+++.+.|..|+-+|... | -+| .++++.+.......+. .+ -++.+..
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G--~eV~~Ll~~~p~~~dS~m~H-----~~-----------------n~~~~~~ 53 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----G--HEVVYLLTVKPENGDSYMFH-----TP-----------------NLELAEL 53 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----C--CeeEEEEEEecCCCCeeeee-----cc-----------------chHHHHH
Confidence 4677788888888777777764 4 444 5555555544111110 00 1233333
Q ss_pred HHHhcCCceEEEEEEeeC---ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 86 VYRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.++..| +++.+....| .-.+.+.+..++.++|-||.|.--.
T Consensus 54 ~Ae~~g--i~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s 97 (223)
T COG2102 54 QAEAMG--IPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIAS 97 (223)
T ss_pred HHHhcC--CceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhh
Confidence 444455 7766666666 4578888889999999999997554
No 303
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=32.12 E-value=2e+02 Score=22.02 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=7.8
Q ss_pred HHHHhcCCCCCeehh
Q 030672 143 SFQFLPNSQPSRLFG 157 (173)
Q Consensus 143 ~~~ll~~~~~pvL~~ 157 (173)
...+=..+..||.+|
T Consensus 190 i~~ik~~~~~Pv~vG 204 (259)
T PF00290_consen 190 IKRIKKHTDLPVAVG 204 (259)
T ss_dssp HHHHHHTTSS-EEEE
T ss_pred HHHHHhhcCcceEEe
Confidence 344444566777764
No 304
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=32.06 E-value=1.7e+02 Score=22.53 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
++...+..++.| +++-+.+..-.-.+.+ .+ -+|++-+|++.-.... -...+-++.+||++
T Consensus 77 L~~l~~v~~~~g--lpv~tEv~~~~~~~~~----~d-~vd~lqIgAr~~~n~~----------ll~~as~~~~pV~~ 136 (270)
T PF00793_consen 77 LDILSEVKEGLG--LPVATEVLDPEQAEYV----AD-LVDWLQIGARLMENQD----------LLEAASGTGKPVGF 136 (270)
T ss_dssp HHHHHHHHHHHT---EEEEEESSGGGHHHH----HT-TESEEEE-GGGTTCHH----------HHHHHHCTSSEEEE
T ss_pred chhHHHHHhhhC--CeeeEEecCcccHHHH----Hh-cCcEEEECcchhcCHH----------HHHHhccCCCeEEe
Confidence 334444444457 8888888876544443 33 3889999986532221 12445567888887
No 305
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=32.04 E-value=70 Score=21.69 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=24.7
Q ss_pred EEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhh
Q 030672 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRY 134 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~ 134 (173)
..+..| .+.+.+.+...++|++|.+..|..++..+
T Consensus 73 ~~v~~G--~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt 107 (129)
T PF02670_consen 73 IEVLSG--PEGLEELAEEPEVDIVVNAIVGFAGLKPT 107 (129)
T ss_dssp SEEEES--HHHHHHHHTHTT-SEEEE--SSGGGHHHH
T ss_pred CEEEeC--hHHHHHHhcCCCCCEEEEeCcccchHHHH
Confidence 344445 47788888889999999999998887763
No 306
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.89 E-value=2.4e+02 Score=21.69 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCCChh--hhhhhhcccchHHHHhcCC-CC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFI--KRYKQLILAALSFQFLPNS-QP 152 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~~~~--~~~~~~~~gs~~~~ll~~~-~~ 152 (173)
++++.+.+.+.. .+++-..+...+..+ +..+.+++.++|-+++........ .. +-..-..+...+ ..
T Consensus 58 ~~~~~~~~~~~~---~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~-----i~~~~~~v~~a~~~l 129 (288)
T cd00954 58 QIAEIVAEAAKG---KVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEE-----IKDYYREIIAAAASL 129 (288)
T ss_pred HHHHHHHHHhCC---CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHH-----HHHHHHHHHHhcCCC
Confidence 344444444322 255555454444544 444778999999999876543221 22 222235566677 68
Q ss_pred Ceehh
Q 030672 153 SRLFG 157 (173)
Q Consensus 153 pvL~~ 157 (173)
||++=
T Consensus 130 pi~iY 134 (288)
T cd00954 130 PMIIY 134 (288)
T ss_pred CEEEE
Confidence 88873
No 307
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=31.72 E-value=2.2e+02 Score=21.42 Aligned_cols=44 Identities=2% Similarity=-0.053 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCce--EEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 80 MNRAEAVYRNFQNNI--HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 80 l~~~~~~~~~~~~~v--~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+.++.+.+++.| . .+-..+--+.+.+.|..+.. .+|+|.+=+..
T Consensus 105 ~~~~l~~Ik~~g--~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~ 150 (228)
T PRK08091 105 LALTIEWLAKQK--TTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLD 150 (228)
T ss_pred HHHHHHHHHHCC--CCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEEC
Confidence 445556666677 5 66666667799999999999 78877665433
No 308
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=31.66 E-value=82 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeeCCh
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA 105 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~ 105 (173)
...+.+..+.+.+.+.. +...+..||.
T Consensus 24 d~~~~f~~~l~~a~~~~----vD~vliAGDl 50 (390)
T COG0420 24 DQKKAFDELLEIAKEEK----VDFVLIAGDL 50 (390)
T ss_pred HHHHHHHHHHHHHHHcc----CCEEEEcccc
Confidence 33445555555555554 4667776654
No 309
>PRK04527 argininosuccinate synthase; Provisional
Probab=31.39 E-value=3e+02 Score=22.68 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=28.1
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|+.++.-.|.-++.++.. .+ .+++.+++...
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e----~G--~~Viavt~d~g 37 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQE----RG--YAVHTVFADTG 37 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHH----cC--CcEEEEEEEeC
Confidence 7899999998888888888666 26 78999988554
No 310
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=31.31 E-value=1.7e+02 Score=19.71 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeC-----------------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCG-----------------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g-----------------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..+.+.+.+.+++.+ ++++..-..+ +..+.+.+..+ ++|.+|+++.-+
T Consensus 17 ~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--~aD~iI~~sP~y 81 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLK--EADGIIFASPVY 81 (152)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH--HSSEEEEEEEEB
T ss_pred HHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhcee--cCCeEEEeecEE
Confidence 445666666666667 6776664443 22355666666 999999998754
No 311
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.26 E-value=2.4e+02 Score=21.51 Aligned_cols=49 Identities=12% Similarity=-0.020 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+.+-+.+.+++.| +.+......+++. ..+++.....++|-||+....
T Consensus 14 ~~~~~~i~~~a~~~g--~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~ 64 (302)
T TIGR02634 14 QKDRDIFVAAAESLG--AKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN 64 (302)
T ss_pred HHHHHHHHHHHHhcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 344555556666666 5554433333443 356666777789988886543
No 312
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=31.24 E-value=2.5e+02 Score=21.72 Aligned_cols=47 Identities=11% Similarity=0.041 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeC---ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.=++.+-+.+++.| +.-.+.-+ ...+.+.++++++++|.|.+.+...
T Consensus 109 ~Gie~F~~~~~~~G----vdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt 158 (265)
T COG0159 109 YGIEKFLRRAKEAG----VDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTT 158 (265)
T ss_pred hhHHHHHHHHHHcC----CCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 34455556666666 33444443 2245566677777777777765443
No 313
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=31.22 E-value=88 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=27.8
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
||++++.+|-.+.++.+....|.+. + .+++++-.
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~-g--~~V~vv~T 34 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEA-G--VEVHLVIS 34 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEC
Confidence 6899999999999999999998554 6 67776643
No 314
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=31.00 E-value=2.4e+02 Score=21.40 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-E
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH-V 96 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~-~ 96 (173)
+..++++.++++...+ ++|.++-.-... .....+.+.+.+++.| .. +
T Consensus 13 ~~~i~~~~~~lag~~~--~rI~~iptAS~~----------------------------~~~~~~~~~~~~~~lG--~~~v 60 (250)
T TIGR02069 13 DREILREFVSRAGGED--AIIVIITSASEE----------------------------PREVGERYITIFSRLG--VKEV 60 (250)
T ss_pred hHHHHHHHHHHhCCCC--ceEEEEeCCCCC----------------------------hHHHHHHHHHHHHHcC--Ccee
Confidence 3558899999998766 777766422110 0012334445555566 53 4
Q ss_pred EEEEeeC---ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHh
Q 030672 97 KRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFL 147 (173)
Q Consensus 97 ~~~~~~g---~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll 147 (173)
+...... ....++.+... ++|.|+++-.....+.. .+-++-..+.+
T Consensus 61 ~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~---~l~~t~l~~~l 109 (250)
T TIGR02069 61 KILDVREREDASDENAIALLS--NATGIFFTGGDQLRITS---LLGDTPLLDRL 109 (250)
T ss_pred EEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHH---HHcCCcHHHHH
Confidence 4433321 12345667777 99999997544333333 33444444444
No 315
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=31.00 E-value=2.7e+02 Score=23.78 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
...+.+.+.| +++-......--.+++++.|.++++.|++-|.+.
T Consensus 467 Dtie~aa~~G--v~aIiqPgGSirD~evI~aAne~gIamvfTg~Rh 510 (513)
T PRK00881 467 DGVEAAAKAG--ITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRH 510 (513)
T ss_pred hHHHHHHHcC--CeEEEeCCCCCChHHHHHHHHHcCCEEEECCCCC
Confidence 3444555666 4433333322336889999999999999988764
No 316
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=30.96 E-value=54 Score=24.13 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 108 VICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 108 ~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+...+.+.+.|.+.+|.+..-.... +..+...+=+++.+||++
T Consensus 15 ~ia~~v~~~gtDaI~VGGS~gvt~~~-----~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 15 KIAKNAKDAGTDAIMVGGSLGIVESN-----LDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHHhcCCCEEEEcCcCCCCHHH-----HHHHHHHHHhhcCCCEEE
Confidence 35556677788888887542112222 333334443347788876
No 317
>PRK06850 hypothetical protein; Provisional
Probab=30.86 E-value=3.4e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.0
Q ss_pred EEEEecCChHHHHHHHHHHhh
Q 030672 8 VVVAVDESEESMHALSWCLNN 28 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~l 28 (173)
+.|+.++...|..++..+..-
T Consensus 37 ~vV~fSGGKDStavL~Lv~~A 57 (507)
T PRK06850 37 WVIGYSGGKDSTAVLQLVWNA 57 (507)
T ss_pred eEEeCCCCchHHHHHHHHHHH
Confidence 589999999998888777654
No 318
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=30.80 E-value=2.6e+02 Score=21.76 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeCCh--HHHHHHHHhhcCC--CEEEEe
Q 030672 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDA--KDVICGTVEKLEA--DTLVMG 124 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~--~~~I~~~a~~~~~--dllV~G 124 (173)
+...+++..+.+++.+.+ ..++.+.-..+. .+.|.+++++.++ ..||.=
T Consensus 141 ~~~n~vl~~a~elA~dvd--c~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkH 193 (285)
T COG1831 141 EASNEVLEYAMELAKDVD--CAVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKH 193 (285)
T ss_pred HHHHHHHHHHHHHhhcCC--CcEEEecCCCChHHHHHHHHHHHHhCCCcceeEee
Confidence 445667888888888877 778877777655 8999999998884 555553
No 319
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=30.65 E-value=1.6e+02 Score=22.27 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh----cCCCEEEEecCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMGSHGYG 129 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G~~~~~ 129 (173)
..+.+++.+++.| +.-...+..|+..+.+-+...+ ..+|+|.+-.....
T Consensus 116 ~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~ 168 (247)
T PLN02589 116 NYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDN 168 (247)
T ss_pred HHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHH
Confidence 3445666666777 6666778889988877776542 58999999876543
No 320
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=30.61 E-value=2.3e+02 Score=21.17 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEee-----CChHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGC-----GDAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~-----g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
.....+..+.+.+++.| .++...-.. ++..+.|.+..++++++-|++-..+.-.+..
T Consensus 46 l~~saMRhfa~~L~~~G--~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~ 107 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKG--FRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ 107 (224)
T ss_dssp HHHHHHHHHHHHHHHTT----EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 34556667777777888 888877776 3557899999999999999999877655554
No 321
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=30.56 E-value=1.9e+02 Score=20.25 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEE---EEEeeC--ChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHHH
Q 030672 74 ESVNSVMNRAEAVYRNFQNNIHVK---RVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSFQ 145 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~v~~~---~~~~~g--~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~~ 145 (173)
....++++-+.+.+++.| ...+ ...+-| ...-.+-+.++..++|-+|. |. +|.+.-.. ..-+.+++.
T Consensus 25 ~I~d~ll~gA~~~l~~~G--~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd---~Va~~~~~g 99 (152)
T COG0054 25 DITDALLEGAVDALKRHG--ADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGETYHFD---YVANEVARG 99 (152)
T ss_pred HHHHHHHHHHHHHHHHcC--CCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCCccHH---HHHHHHHHH
Confidence 455667788888887777 4443 444445 44444556688888887765 54 44444333 334555554
Q ss_pred ---HhcCCCCCeehhhHH---HHHHhhc
Q 030672 146 ---FLPNSQPSRLFGDLI---LFQILQG 167 (173)
Q Consensus 146 ---ll~~~~~pvL~~~~~---~~~~~~~ 167 (173)
+--...+||.+|=+- ..|.+.+
T Consensus 100 l~~vsl~~~~PV~~GVLt~~~~eqA~~r 127 (152)
T COG0054 100 LMDVSLETGVPVTFGVLTTDNIEQAIER 127 (152)
T ss_pred HHHHHHhhCCCeEeeecCCCcHHHHHHH
Confidence 455689999986443 3454443
No 322
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=30.40 E-value=2.2e+02 Score=20.75 Aligned_cols=50 Identities=6% Similarity=-0.115 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhcCCCEEEEecCCCCh-hhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 105 AKDVICGTVEKLEADTLVMGSHGYGF-IKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 105 ~~~~I~~~a~~~~~dllV~G~~~~~~-~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
....+++...+.++|.|.+-.+.... ... ...=....++.+...+||...
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~---~~~~~~~~~i~~~~~ipvi~~ 189 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSG---PADWDYIAEIKEAVSIPVIAN 189 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCC---CCCHHHHHHHHhCCCCeEEEe
Confidence 45667777888899999885432111 000 000112345666788999983
No 323
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=30.39 E-value=67 Score=21.57 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
...+|+|.-|....|....+.++.-+...| .++..+...+
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G--~~V~~~g~~~ 78 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANG--VDVIDIGLVP 78 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTT--EEEEEEEEB-
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcc--cccccccccC
Confidence 467999999999999999999998888888 8888887544
No 324
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=30.34 E-value=2.4e+02 Score=21.18 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
..+++++.+++.| ..+...-+.-++.+.|.++.. ++|.|.+|..
T Consensus 50 Yv~k~~~~l~~lg--~~v~~L~l~~~~~~~Ie~~l~--~~d~IyVgGG 93 (224)
T COG3340 50 YVEKVRNALAKLG--LEVSELHLSKPPLAAIENKLM--KADIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHcC--CeeeeeeccCCCHHHHHHhhh--hccEEEECCc
Confidence 4566666777777 888887788888999999988 8999999853
No 325
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=30.28 E-value=1.8e+02 Score=19.91 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=22.6
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHh----hcCCCEEEEe
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVE----KLEADTLVMG 124 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~----~~~~dllV~G 124 (173)
+.+++.| .++.......|-.+.|.+..+ +.++|+||..
T Consensus 27 ~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 27 ELLEEAG--HEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred HHHHHcC--CeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3455577 666666555544455555433 2379999884
No 326
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=30.21 E-value=1.6e+02 Score=19.89 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCCcEEEEEecCC------hHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 3 TNERRVVVAVDES------EESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 3 ~~~~~ILv~vd~s------~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
.+.++|.++.|.+ .+-.+++.....+.+..| +++.++.--
T Consensus 66 ~~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G--~~v~~~~w~ 111 (130)
T PF12965_consen 66 KPGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAG--CKVKIITWP 111 (130)
T ss_pred cCCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 3568999999997 334467777777778888 898887653
No 327
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=30.20 E-value=2.9e+02 Score=22.22 Aligned_cols=131 Identities=9% Similarity=0.024 Sum_probs=63.5
Q ss_pred CCcEEEEEecC-ChH-HHHHHHHHHhhcCCCC--CCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDE-SEE-SMHALSWCLNNLFSPD--TNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (173)
Q Consensus 4 ~~~~ILv~vd~-s~~-s~~al~~A~~la~~~~--~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
.-+++||.+-. |-. -..+++||..+..... .+.-+.++.++...|-.. .++-+....+.....++ -+..-+.
T Consensus 45 ~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt-~GWKGli~DP~ld~sf~---i~~GL~~ 120 (344)
T TIGR00034 45 KDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTT-VGWKGLINDPDLNGSFR---INHGLRI 120 (344)
T ss_pred CCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCc-cccccccCCCCcCCCCC---HHHHHHH
Confidence 34566666655 333 3568888877655321 002345666665444322 22222222221111110 0111112
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.++.-...+.| .++-+++..-...+-+.+. +++..+|++.- +.. -..+.....+||.|
T Consensus 121 ~R~ll~~i~~~G--lPvatE~ld~~~~~y~~Dl-----isw~aIGARt~esq~-----------hRelaSgl~~PVgf 180 (344)
T TIGR00034 121 ARKLLLDLVNLG--LPIAGEFLDMISPQYLADL-----FSWGAIGARTTESQV-----------HRELASGLSCPVGF 180 (344)
T ss_pred HHHHHHHHHHhC--CCeEEEecCcCcHHHHHHH-----HhhccccCccccCHH-----------HHHHHhCCCCceEe
Confidence 222221235677 8899998887554444333 23446776542 222 25667778999988
No 328
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.02 E-value=83 Score=18.65 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
..+.+++.++.+.++....+ +++.++..+ .++..+.
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~-~~~~a~~~g--~~ii~it 81 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLA-ALEIAKELG--IPVIAIT 81 (87)
T ss_pred CCCCEEEEEECCCCCHHHHH-HHHHHHHcC--CeEEEEe
Confidence 45678888888887766544 556667667 7776665
No 329
>PLN02591 tryptophan synthase
Probab=29.90 E-value=2.5e+02 Score=21.35 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=9.0
Q ss_pred HHHhcCCCCCeehh
Q 030672 144 FQFLPNSQPSRLFG 157 (173)
Q Consensus 144 ~~ll~~~~~pvL~~ 157 (173)
..+=+.+..||++|
T Consensus 182 ~~vk~~~~~Pv~vG 195 (250)
T PLN02591 182 QELKEVTDKPVAVG 195 (250)
T ss_pred HHHHhcCCCceEEe
Confidence 34444578888875
No 330
>PRK00211 sulfur relay protein TusC; Validated
Probab=29.87 E-value=1.5e+02 Score=19.61 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=25.9
Q ss_pred CcEEEEEecCChH----HHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 5 ERRVVVAVDESEE----SMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 5 ~~~ILv~vd~s~~----s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
|++|++.+..++. +..+++.|+..+.. + .++.++..-+
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~-~--~~v~vff~~D 42 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAF-T--EDIGVFFIDD 42 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcc-c--CCeeEEEEhh
Confidence 5678888876544 66788877776554 3 4777776654
No 331
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.69 E-value=75 Score=20.61 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=30.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
..+.+++.++.+.+....++.+- .|++.+ +++.++.-...
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~~g--~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKERG--APVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHHTT--SEEEEEESSTT
T ss_pred cccceeEeeeccccchhhhhhhH-HHHhcC--CeEEEEeCCCC
Confidence 56789999999888877777666 778878 88866654443
No 332
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=29.67 E-value=1.7e+02 Score=19.45 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEEe
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~G 124 (173)
.+++.| .++.......|-.+.|.+..++ .++|+||..
T Consensus 27 ~l~~~G--~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 27 LLEDLG--CEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred HHHHCC--CEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 344566 6666665555444444444322 248998884
No 333
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=29.60 E-value=2.2e+02 Score=20.62 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=15.4
Q ss_pred ChHHHHHHHHhhcCCCEEEEe
Q 030672 104 DAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G 124 (173)
+-.++.+..+.+..+|++++.
T Consensus 34 ~~~~~~~~~~~~~~pDlvLlD 54 (207)
T PRK15411 34 ETVDDLAIACDSLRPSVVFIN 54 (207)
T ss_pred CCHHHHHHHHhccCCCEEEEe
Confidence 444555567777789999999
No 334
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.47 E-value=86 Score=20.31 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
+.+.+++.++.|.++...++ +++.|+..| +++..+.-.+..
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~-~~~~a~~~g--~~vi~iT~~~~s 85 (126)
T cd05008 45 DEDTLVIAISQSGETADTLA-ALRLAKEKG--AKTVAITNVVGS 85 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHH-HHHHHHHcC--CeEEEEECCCCC
Confidence 46778999999988887554 455567777 888777665443
No 335
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=29.27 E-value=1.8e+02 Score=21.72 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+..+.+++.+++.| +.-+..+.. |+..+.+.+ -....+|+|.+-...
T Consensus 95 e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~-~~~~~fDliFIDadK 142 (219)
T COG4122 95 ERAEIARENLAEAG--VDDRIELLLGGDALDVLSR-LLDGSFDLVFIDADK 142 (219)
T ss_pred HHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHh-ccCCCccEEEEeCCh
Confidence 45666777777788 666666666 688888887 334599999997654
No 336
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=29.26 E-value=3.5e+02 Score=25.60 Aligned_cols=50 Identities=10% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEee--CChHHHHHHHHhhcCCCEEEEecCC
Q 030672 75 SVNSVMNRAEAVYRNFQNNIHVKRVVGC--GDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v~~~~~~~~--g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++++.+.+++++..++ |+++...+. ......|++-.++-.+|+| +|+|.
T Consensus 655 LA~QHy~tFkeRF~~fP--V~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTHr 706 (1139)
T COG1197 655 LAQQHYETFKERFAGFP--VRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTHR 706 (1139)
T ss_pred hHHHHHHHHHHHhcCCC--eeEEEecccCCHHHHHHHHHHHhcCCccEE-EechH
Confidence 46778999999999988 777766554 3667888888888889865 57765
No 337
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=29.25 E-value=2.2e+02 Score=20.55 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++++.+.+.+++.| +.+...-..+++. ...++.....++|.||++...
T Consensus 15 ~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~ 65 (267)
T cd01536 15 QAMNKGAEAAAKELG--VELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVD 65 (267)
T ss_pred HHHHHHHHHHHHhcC--ceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345555555555566 6666655555543 234444445589998887543
No 338
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=29.12 E-value=3e+02 Score=22.04 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=22.8
Q ss_pred CCCCCcEEEEEecCCh----HHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 1 MNTNERRVVVAVDESE----ESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~----~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
|.+.++|||+-...-- .+.+|+..++......+ .++.++.+.
T Consensus 1 ~~~~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~--~~~~~~D~~ 46 (391)
T PRK13608 1 MVTQNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDH--LSVIEHDLF 46 (391)
T ss_pred CCCCCceEEEEECCCCchHHHHHHHHHHHHHhhCCCC--ceEEEeehH
Confidence 6778889998874422 23445555554322112 456555554
No 339
>PRK14057 epimerase; Provisional
Probab=28.94 E-value=2.7e+02 Score=21.36 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.+++++..+.+ ..+...+.-| ....-+..+.+.++|.+|+|+.
T Consensus 179 KI~~lr~~~~~~~--~~~~IeVDGG-I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 179 RVAQLLCLLGDKR--EGKIIVIDGS-LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHhcC--CCceEEEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 3444455555555 5555555555 4444455666779999999964
No 340
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=28.90 E-value=2.1e+02 Score=20.06 Aligned_cols=37 Identities=8% Similarity=-0.013 Sum_probs=22.3
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhh----cCCCEEEEe
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G 124 (173)
.+++.| .++.......|-.+.|.+..++ .++|+||..
T Consensus 30 ~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 30 RLTEAG--HRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred HHHHCC--CeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 344566 6666665555555555554333 479998884
No 341
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=28.76 E-value=2.9e+02 Score=21.73 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=36.3
Q ss_pred eEEEEEEeeC-Ch----HHHHHHHHhhcCCCEEEEecCCCCh-hhhhhhhcccchHHHHhcCCCCCeeh-hhH
Q 030672 94 IHVKRVVGCG-DA----KDVICGTVEKLEADTLVMGSHGYGF-IKRYKQLILAALSFQFLPNSQPSRLF-GDL 159 (173)
Q Consensus 94 v~~~~~~~~g-~~----~~~I~~~a~~~~~dllV~G~~~~~~-~~~~~~~~~gs~~~~ll~~~~~pvL~-~~~ 159 (173)
+++...++.| +. ...+.+.+++.++|.|.+-.+.+.. ..+. ..=....++.++..+||+. |+.
T Consensus 134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~---a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCC---cChHHHHHHHHhcCCcEEEeCCC
Confidence 5566666555 22 4467777888999999875443221 1110 0112345666678899887 443
No 342
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.33 E-value=2.5e+02 Score=22.66 Aligned_cols=126 Identities=12% Similarity=0.048 Sum_probs=61.4
Q ss_pred CCcEEEEEecC-Ch-HHHHHHHHHHhhcCC---CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHH-HHHHHHH
Q 030672 4 NERRVVVAVDE-SE-ESMHALSWCLNNLFS---PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEK-YASESVN 77 (173)
Q Consensus 4 ~~~~ILv~vd~-s~-~s~~al~~A~~la~~---~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (173)
.-++.||.+-. |- .-..+++||.++... ..+ .-+.++.++...|-. ..++-+....++....++- .--..++
T Consensus 49 ~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d-~l~ivmR~y~eKPRT-t~gWKGli~DP~ldgsf~i~~GL~~~R 126 (348)
T PRK12756 49 EDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQD-RLEIVMRTYFEKPRT-VVGWKGLISDPDLDGSYRVNHGLELAR 126 (348)
T ss_pred CCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhc-cEEEEEEeccccCCC-CcccccccCCCCCCCCccHHHHHHHHH
Confidence 34566776655 22 246688888666543 220 234467776555432 2332222222222111111 1113333
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEE---EEecCCC-ChhhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTL---VMGSHGY-GFIKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll---V~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
+++.+. .+.| .++-+++..--.. ++-.|++ .+|++.- +.. -..++....+|
T Consensus 127 ~ll~~i----~~~G--lP~atE~ld~~~~--------qY~~DliSwgaIGARt~esq~-----------hre~ASgls~P 181 (348)
T PRK12756 127 KLLLQI----NELG--LPTATEFLDMVTG--------QYIADLISWGAIGARTTESQI-----------HREMASALSCP 181 (348)
T ss_pred HHHHHH----HHcC--CceeehhcccccH--------HHHHHHHhhhhhccccccCHH-----------HHHHHhcCCCc
Confidence 444332 4566 7777776665222 3345677 4454432 222 35677778888
Q ss_pred eeh
Q 030672 154 RLF 156 (173)
Q Consensus 154 vL~ 156 (173)
|.|
T Consensus 182 Vgf 184 (348)
T PRK12756 182 VGF 184 (348)
T ss_pred eEe
Confidence 887
No 343
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=28.16 E-value=97 Score=21.83 Aligned_cols=65 Identities=6% Similarity=-0.166 Sum_probs=25.9
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCCh-hhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF-IKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~-~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
++-..-+...++......+++++++.++-++...... ....-.-.+-..-..++....-|||++.
T Consensus 33 LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC 98 (164)
T PF03162_consen 33 LKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHC 98 (164)
T ss_dssp -SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-
T ss_pred CceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEe
Confidence 4443334444556667778888888888888665433 1100000122223456777888888865
No 344
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=28.13 E-value=1.9e+02 Score=19.44 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEE
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVM 123 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~ 123 (173)
+.+.+++.| .++.......|-.+.|.+..++ .+.|+||.
T Consensus 22 l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~Vit 62 (144)
T PF00994_consen 22 LAALLEELG--IEVIRYGIVPDDPDAIKEALRRALDRADLVIT 62 (144)
T ss_dssp HHHHHHHTT--EEEEEEEEEESSHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CeeeEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence 344555677 7777665555445555444332 26699888
No 345
>PRK14561 hypothetical protein; Provisional
Probab=28.10 E-value=2.3e+02 Score=20.39 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.4
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
+|+|++++...|.-++..+..+ . .+.++++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~----~---~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF----Y---DVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc----C---CeEEEEEe
Confidence 6999999998888777655433 2 34566654
No 346
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=27.88 E-value=2.3e+02 Score=20.29 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=22.5
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
++|++++.-.|.-++..+.. .+ .++..+++..
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g--~~v~~~~~~~ 32 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EG--YEVHAITFDY 32 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cC--CcEEEEEEEC
Confidence 36788888878777665544 35 6888888854
No 347
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=27.73 E-value=1.6e+02 Score=19.51 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=31.2
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
|||.+--|.+-...+||..|+.-|+..+|+..++=+-|.
T Consensus 71 KRIvITGD~DIDhDqaLa~aI~eAk~q~Pdm~Vtkvvv~ 109 (114)
T PF05902_consen 71 KRIVITGDADIDHDQALAQAIKEAKEQHPDMSVTKVVVH 109 (114)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 688888888877889999999999998876666555443
No 348
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.56 E-value=3e+02 Score=21.49 Aligned_cols=76 Identities=7% Similarity=-0.074 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCC-C
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNS-Q 151 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~-~ 151 (173)
.++++.+.+.+. + ++++-..+...+.. -...+.|++.++|-+++-...... -.. +-..-..|...+ .
T Consensus 64 ~~v~~~~~~~~~--g-rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~-----l~~yf~~va~a~~~ 135 (309)
T cd00952 64 QAFVATVVETVA--G-RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDT-----AVQFYRDVAEAVPE 135 (309)
T ss_pred HHHHHHHHHHhC--C-CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHH-----HHHHHHHHHHhCCC
Confidence 344555555442 2 36666666544444 444578999999988887654322 122 222235667778 5
Q ss_pred CCeehhhHH
Q 030672 152 PSRLFGDLI 160 (173)
Q Consensus 152 ~pvL~~~~~ 160 (173)
.||++=..+
T Consensus 136 lPv~iYn~P 144 (309)
T cd00952 136 MAIAIYANP 144 (309)
T ss_pred CcEEEEcCc
Confidence 899874443
No 349
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.45 E-value=2.5e+02 Score=20.78 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
+.++.+..++.| ..+-..+--+.|.+.+..+.. ..|+|.+=+
T Consensus 95 ~~~~l~~ik~~g--~k~GlalnP~Tp~~~i~~~l~--~~D~vlvMt 136 (220)
T PRK08883 95 VDRTLQLIKEHG--CQAGVVLNPATPLHHLEYIMD--KVDLILLMS 136 (220)
T ss_pred HHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHH--hCCeEEEEE
Confidence 455556666777 777777777899999999988 777665533
No 350
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=27.44 E-value=2.9e+02 Score=21.36 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCEEEE--ecCCCChhhhhhhhccc-chHHHHhcCCCCCeeh-h
Q 030672 106 KDVICGTVEKLEADTLVM--GSHGYGFIKRYKQLILA-ALSFQFLPNSQPSRLF-G 157 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~--G~~~~~~~~~~~~~~~g-s~~~~ll~~~~~pvL~-~ 157 (173)
.++..+++++.++|.|-+ |+...+.-.. .-+| .....+-...++|+.+ |
T Consensus 155 ~eea~~f~~~tg~DyLAvaiG~~hg~~~~~---~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 155 TTEAKRFAEETDVDALAVAIGNAHGMYNGD---PNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred HHHHHHHHHhhCCCEEEEccCCCCCCCCCC---CccCHHHHHHHHHhcCCCEEEEC
Confidence 456677787889999999 7543222111 0112 1345566667899888 5
No 351
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.41 E-value=3.7e+02 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChh
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
..++..+ +++.......+..+.|-.+.+..++|+|++-+.|++..
T Consensus 290 ~yae~lg--ipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k 334 (436)
T PRK11889 290 DYVKTIG--FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR 334 (436)
T ss_pred HHhhhcC--CcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCc
Confidence 3433445 55543322223333333333345799999999888664
No 352
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=27.30 E-value=2.5e+02 Score=20.42 Aligned_cols=45 Identities=13% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEec
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGS 125 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~ 125 (173)
+...+.+.+++.| ..+.......++.. .+++.....++|-+|+..
T Consensus 17 ~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (266)
T cd06282 17 CVQGIQEEARAAG--YSLLLATTDYDAEREADAVETLLRQRVDGLILTV 63 (266)
T ss_pred HHHHHHHHHHHCC--CEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555555555666 55555443334432 444455556888888754
No 353
>PRK00766 hypothetical protein; Provisional
Probab=27.25 E-value=59 Score=23.75 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=44.0
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhh----cCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh--hHHHHHHhh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEK----LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG--DLILFQILQ 166 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~----~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~--~~~~~~~~~ 166 (173)
+-.....+.| |..+.|.++.+. .+..+|.+..-..++|.= -....|-+.+..||+.. ..+....+.
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv-------vD~~~l~~~tg~PVI~V~r~~p~~~~ie 115 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV-------VDIEELYRETGLPVIVVMRKKPDFEAIE 115 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE-------ecHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 5567777778 889999999875 344466665444444431 12456778888898886 555545444
Q ss_pred ccc
Q 030672 167 GSL 169 (173)
Q Consensus 167 ~~~ 169 (173)
..+
T Consensus 116 ~AL 118 (194)
T PRK00766 116 SAL 118 (194)
T ss_pred HHH
Confidence 433
No 354
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=27.18 E-value=2.6e+02 Score=20.60 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEee--CChH--HHHHHHHhhcCCCEEEEecC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGC--GDAK--DVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~--g~~~--~~I~~~a~~~~~dllV~G~~ 126 (173)
..+.+.+.+.+++.| ..+...... +++. ...++.....++|-+|+...
T Consensus 15 ~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (275)
T cd06320 15 RSLKEGYENEAKKLG--VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPI 66 (275)
T ss_pred HHHHHHHHHHHHHhC--CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 345555666666677 665554332 2443 34455566678998888643
No 355
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.11 E-value=2.5e+02 Score=20.49 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~ 126 (173)
.++++.+.+.+++.| +.+......+++. ..+++.+...++|-+|+...
T Consensus 15 ~~~~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 15 IELANAMKEEAKKQK--VNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHHHhcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345666666666677 6665544334443 34455556779999998644
No 356
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.05 E-value=3.6e+02 Score=23.04 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHH---HhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGT---VEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
+.+.+.+.+.++. ..++..+..|+..+++... ....++|+||-. |+|+..|=.+.++||.
T Consensus 15 l~~~~~~i~~~~~--~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr---------------G~ta~~i~~~~~iPVv 77 (526)
T TIGR02329 15 LFDLFRDIAPEFD--HRANITPIQLGFEDAVREIRQRLGAERCDVVVAG---------------GSNGAYLKSRLSLPVI 77 (526)
T ss_pred HHHHHHHHHHhCC--CCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC---------------chHHHHHHHhCCCCEE
Confidence 4445555555555 3355566777665555533 446678877632 3344555566778886
Q ss_pred h
Q 030672 156 F 156 (173)
Q Consensus 156 ~ 156 (173)
-
T Consensus 78 ~ 78 (526)
T TIGR02329 78 V 78 (526)
T ss_pred E
Confidence 5
No 357
>PRK13337 putative lipid kinase; Reviewed
Probab=26.87 E-value=3e+02 Score=21.25 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
....+.+.+.+ .+++...... .-...+.+.+.+.++|+||+. .|-+.+..
T Consensus 22 ~~~~~~l~~~~--~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~~ 72 (304)
T PRK13337 22 PDVLQKLEQAG--YETSAHATTGPGDATLAAERAVERKFDLVIAA-GGDGTLNE 72 (304)
T ss_pred HHHHHHHHHcC--CEEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-cCCCHHHH
Confidence 33444555666 6655544432 335555555555667776654 33344444
No 358
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.83 E-value=2.8e+02 Score=20.93 Aligned_cols=80 Identities=5% Similarity=-0.101 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
.+.++.++++|+..| ++...++-.... . + .. .........+.+.++.+.++++| +.+-.
T Consensus 93 ~~~~~~~i~~a~~lG--~~~v~~~~~~~~--~---~-------~~-----~~~~~~~~~~~l~~l~~~A~~~G--v~l~l 151 (279)
T TIGR00542 93 LEIMEKAIQLARDLG--IRTIQLAGYDVY--Y---E-------EH-----DEETRRRFREGLKEAVELAARAQ--VTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHhC--CCEEEecCcccc--c---C-------cC-----CHHHHHHHHHHHHHHHHHHHHcC--CEEEE
Confidence 345788899999999 876654321100 0 0 00 01223344556777777888888 77666
Q ss_pred EEeeCCh---HHHHHHHHhhcCCC
Q 030672 99 VVGCGDA---KDVICGTVEKLEAD 119 (173)
Q Consensus 99 ~~~~g~~---~~~I~~~a~~~~~d 119 (173)
+...++. .....+.++..+.+
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~~~ 175 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLNSP 175 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcCCC
Confidence 6543322 34455666654434
No 359
>PRK13055 putative lipid kinase; Reviewed
Probab=26.78 E-value=3.2e+02 Score=21.54 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
...++.+.+.+.+ ++++...... .-...+.+.+.+.++|.||+. .|-+.+..
T Consensus 21 ~~~~i~~~l~~~g--~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~-GGDGTl~e 74 (334)
T PRK13055 21 NVADILDILEQAG--YETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAA-GGDGTINE 74 (334)
T ss_pred HHHHHHHHHHHcC--CeEEEEEeecCCccHHHHHHHHhhcCCCEEEEE-CCCCHHHH
Confidence 4455556666676 6666554442 335566666666678877764 33344444
No 360
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=26.73 E-value=1.8e+02 Score=21.50 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=29.1
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
..++||+.+.+|-.+.++.+....+. + + .+|.++-.
T Consensus 18 ~~k~IllgVtGSIAAyk~~~lvr~L~-~-g--~~V~VvmT 53 (209)
T PLN02496 18 RKPRILLAASGSVAAIKFGNLCHCFS-E-W--AEVRAVVT 53 (209)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHhc-C-C--CeEEEEEC
Confidence 45789999999999999999888774 3 6 78877644
No 361
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=26.69 E-value=2.4e+02 Score=20.04 Aligned_cols=37 Identities=8% Similarity=-0.084 Sum_probs=20.7
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
||++.+-.+..+..+-+-+..+.+...++-+|.+...
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~ 38 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAA 38 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeH
Confidence 4555555556666666666666665454355554443
No 362
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=26.53 E-value=2.8e+02 Score=23.76 Aligned_cols=62 Identities=3% Similarity=-0.047 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHH---HhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGT---VEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
++.+.+++.+.+++ ..++..+..+...+++... ....++|+||- -|+++..|=.+.++||
T Consensus 24 ~l~~~~~~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIs---------------rG~ta~~i~~~~~iPV 86 (538)
T PRK15424 24 RLFELFRDISLEFD--HLANITPIQLGFEKAVTYIRKRLATERCDAIIA---------------AGSNGAYLKSRLSVPV 86 (538)
T ss_pred HHHHHHHHHHHhcC--CCceEEehhhhHHHHHHHHHHHHhhCCCcEEEE---------------CchHHHHHHhhCCCCE
Confidence 46677777777777 6666666665444443333 44557887763 2334556666778888
Q ss_pred eh
Q 030672 155 LF 156 (173)
Q Consensus 155 L~ 156 (173)
.-
T Consensus 87 v~ 88 (538)
T PRK15424 87 IL 88 (538)
T ss_pred EE
Confidence 76
No 363
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=26.52 E-value=1.1e+02 Score=24.21 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+..+.++.++ ++|+||+|.... +..-.. ++...+. .-++++++|+++.
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSlyTSIiPn--Llv~gI~-eAI~~s~a~kV~v 210 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSLYTSIIPN--LLVPEIA-EALRESKAPKVYV 210 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhchh--cCchhHH-HHHHhCCCCEEEE
Confidence 55688889999 999999996543 222221 3333344 4456678888763
No 364
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=26.51 E-value=1.5e+02 Score=24.25 Aligned_cols=35 Identities=3% Similarity=0.150 Sum_probs=28.7
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.++|++++.+|-.+.+++++...|.+ .+ .++.++-
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L~~-~g--~~V~vv~ 37 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVRELVR-QG--AEVKVIM 37 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHh-CC--CEEEEEE
Confidence 57999999999999999999988854 46 7777653
No 365
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.49 E-value=96 Score=22.59 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV 49 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~ 49 (173)
....+++.++.|-++.. +..+++.|+..| .++..+.-.+..+.
T Consensus 108 ~~gDvli~iS~SG~s~~-v~~a~~~Ak~~G--~~vI~IT~~~~s~l 150 (196)
T PRK10886 108 HAGDVLLAISTRGNSRD-IVKAVEAAVTRD--MTIVALTGYDGGEL 150 (196)
T ss_pred CCCCEEEEEeCCCCCHH-HHHHHHHHHHCC--CEEEEEeCCCCChh
Confidence 56789999999887765 666778889888 89988877665543
No 366
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=26.41 E-value=3.4e+02 Score=21.70 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCCh----HHHHHHHHhhcCCCEEE
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA----KDVICGTVEKLEADTLV 122 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV 122 (173)
..+++.+.+++.+ +.+.+....++| .+.+.+.+++.++|.||
T Consensus 44 ~~~~v~~~l~~~~--~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~II 89 (366)
T PRK09423 44 VGDRVEASLKEAG--LTVVFEVFNGECSDNEIDRLVAIAEENGCDVVI 89 (366)
T ss_pred HHHHHHHHHHhCC--CeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3455555555556 555443444544 45666677888898777
No 367
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=26.41 E-value=1.2e+02 Score=24.97 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCCCEEEEecC
Q 030672 106 KDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.|+++|+++++|+||.|..
T Consensus 54 ~e~l~~~~~~~~id~Vi~~~d 74 (435)
T PRK06395 54 YDLIEDFALKNNVDIVFVGPD 74 (435)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 477788888888888887753
No 368
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.30 E-value=3.2e+02 Score=21.48 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEE-eeCChHH--HHHHHHhhcCCCEEEEecCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVV-GCGDAKD--VICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~-~~g~~~~--~I~~~a~~~~~dllV~G~~~ 127 (173)
+.+-+.+.+++.| +.+.... ..++... .+++.....++|-||+....
T Consensus 41 ~~~Gi~~aa~~~G--~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d 90 (336)
T PRK15408 41 GGNGAKEAGKELG--VDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVS 90 (336)
T ss_pred HHHHHHHHHHHhC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3444455555677 6665422 2234443 34555667899999996543
No 369
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=26.26 E-value=61 Score=25.92 Aligned_cols=30 Identities=3% Similarity=-0.011 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 17 ~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
.+++..+||+++|...+. .+|+++|=-...
T Consensus 185 kseRIaryAF~yA~k~gR-KkVTaVHKAnim 214 (375)
T KOG0784|consen 185 KSERIARYAFEYAKKNGR-KKVTAVHKANIM 214 (375)
T ss_pred hhHHHHHHHHHHHHHhCC-ceEEEEeccCce
Confidence 478899999999999887 899999976543
No 370
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.20 E-value=2.8e+02 Score=20.61 Aligned_cols=47 Identities=13% Similarity=0.023 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.+.+.+.+++.| +.+.+....+++. ...++.....++|-||+...
T Consensus 16 ~~~~gi~~~~~~~G--~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 16 QGKQAADEAGKLLG--VDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPL 64 (272)
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45555556666677 7776665554543 34455566789999999643
No 371
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.74 E-value=2.8e+02 Score=20.53 Aligned_cols=80 Identities=5% Similarity=-0.060 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
.+.++.++++|+..| ++...+..-..+.. ... +...+...+.+.++.+.+++.| +.+-.
T Consensus 83 ~~~~~~~i~~a~~lg--~~~i~~~~g~~~~~----------~~~-------~~~~~~~~~~l~~l~~~A~~~g--i~l~l 141 (254)
T TIGR03234 83 REGVALAIAYARALG--CPQVNCLAGKRPAG----------VSP-------EEARATLVENLRYAADALDRIG--LTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHhC--CCEEEECcCCCCCC----------CCH-------HHHHHHHHHHHHHHHHHHHhcC--CEEEE
Confidence 456778888999888 77554332111100 000 1122334456667777888888 66666
Q ss_pred EEee--------CChHHHHHHHHhhcCCC
Q 030672 99 VVGC--------GDAKDVICGTVEKLEAD 119 (173)
Q Consensus 99 ~~~~--------g~~~~~I~~~a~~~~~d 119 (173)
+... ....+.+.+++++.+.+
T Consensus 142 E~~~~~~~~~~~l~t~~~~~~li~~v~~~ 170 (254)
T TIGR03234 142 EPINSFDMPGFFLTTTEQALAVIDDVGRE 170 (254)
T ss_pred EECCcccCCCChhcCHHHHHHHHHHhCCC
Confidence 6432 13456777777765433
No 372
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=25.60 E-value=2.7e+02 Score=20.26 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEec
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~ 125 (173)
++...+.+.+++.| +.+.......++. ...++.....++|-+|++.
T Consensus 16 ~~~~~i~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 16 TLKDGAQKEAKELG--YELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHHHHHHHcC--ceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 34455555555566 6665443333453 2455556667899988875
No 373
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=25.60 E-value=2.8e+02 Score=20.56 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=47.4
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAV 86 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (173)
|+++-+++.+.|.-|+..|... + .-..+++..+......... ..+ .+.+..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~---~---~v~~L~t~~~~~~~s~~~H----~~~------------------~~~~~~q 53 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ---H---EVVCLLTMVPEEEDSYMFH----GVN------------------IELIEAQ 53 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-------EEEEEEEEEESTTT-SSS-----STT------------------GTCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh---C---CccEEEEeccCCCCccccc----ccC------------------HHHHHHH
Confidence 5677799999999999888775 2 2446666665432211111 000 1112222
Q ss_pred HHhcCCceEEEEEEeeC---ChHHHHHHHHhhcCCCEEEEecCCCChh
Q 030672 87 YRNFQNNIHVKRVVGCG---DAKDVICGTVEKLEADTLVMGSHGYGFI 131 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g---~~~~~I~~~a~~~~~dllV~G~~~~~~~ 131 (173)
++..| ++.......| +..+.+.+..++.+++.+|.|.-.....
T Consensus 54 A~alg--ipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~ 99 (218)
T PF01902_consen 54 AEALG--IPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDSEYQ 99 (218)
T ss_dssp HHHHT----EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-HHH
T ss_pred HHHCC--CCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCcHHH
Confidence 23344 6655554443 4567777888899999999997654433
No 374
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=25.59 E-value=2.7e+02 Score=20.28 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=48.4
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
|+||.|-+.++.....++-.+..-- ... ..|.+ |+...+.. .+.
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~-~~~--~~I~~--vvs~~~~~-------------------------------~~~ 44 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAG-QLP--AEIVA--VISDRPDA-------------------------------YGL 44 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcC-CCC--cEEEE--EEecCccc-------------------------------hHH
Confidence 4789999988777666666665432 223 44444 33322110 124
Q ss_pred HHHHhcCCceEEEEEEeeC-----ChHHHHHHHHhhcCCCEEEEecC
Q 030672 85 AVYRNFQNNIHVKRVVGCG-----DAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g-----~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
+.+++.| +++...-... .....+.+..++.++|++|+..-
T Consensus 45 ~~a~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 89 (200)
T PRK05647 45 ERAEAAG--IPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGF 89 (200)
T ss_pred HHHHHcC--CCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHh
Confidence 5556677 7654422111 12457888888999999998543
No 375
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=25.54 E-value=2.1e+02 Score=21.40 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=21.8
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCC-CCCeEEEEEEeC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPD-TNNTLVLLYVKP 45 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~-~~~~l~~l~v~~ 45 (173)
||+||+++-+.... .+-.++......+ ...+|++++..+
T Consensus 1 mk~iLlatlG~sPq--VVTETL~aL~~~g~~p~EV~vitT~~ 40 (224)
T PF09623_consen 1 MKNILLATLGTSPQ--VVTETLYALAQQGEIPDEVHVITTRD 40 (224)
T ss_pred CceEEEEecCCCch--HHHHHHHHHHcCCCCCCEEEEEECCC
Confidence 68999999985543 3333333222212 116777775544
No 376
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=25.51 E-value=1.2e+02 Score=23.91 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=30.6
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+..+.+++++ ++|+||+|.... +..-.. ++...+ ..-++++++|+.+
T Consensus 164 ~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~--Llv~gI-~eAi~~s~a~kV~ 212 (308)
T cd07187 164 KANPEALEAIE--EADLIVYGPGSLYTSILPN--LLVKGI-AEAIRASKAPKVY 212 (308)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhh--cCchhH-HHHHHhCCCCEEE
Confidence 45678899998 999999996543 222221 333334 4445677788776
No 377
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=25.43 E-value=4e+02 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.5
Q ss_pred EEEEEecCChHHHHHHHHHHhh
Q 030672 7 RVVVAVDESEESMHALSWCLNN 28 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~l 28 (173)
-.+|+.++...|..++..+..-
T Consensus 15 p~vV~fSGGKDSta~L~Lv~~A 36 (447)
T TIGR03183 15 PWVVGYSGGKDSTAVLQLIWNA 36 (447)
T ss_pred ceEEEeCCCHHHHHHHHHHHHH
Confidence 3689999999999888766654
No 378
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=25.37 E-value=3e+02 Score=21.90 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=31.5
Q ss_pred ceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 93 NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 93 ~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
.+.++......+ .+.+.+..+ ++|+||.++... ..+. ..+.+..+..+|.+.+..
T Consensus 95 ~v~i~~~~~~~~-~~~~~~~~~--~~DlVid~~D~~--~~r~-------~in~~~~~~~ip~i~~~~ 149 (338)
T PRK12475 95 EVEIVPVVTDVT-VEELEELVK--EVDLIIDATDNF--DTRL-------LINDLSQKYNIPWIYGGC 149 (338)
T ss_pred CcEEEEEeccCC-HHHHHHHhc--CCCEEEEcCCCH--HHHH-------HHHHHHHHcCCCEEEEEe
Confidence 366655544433 234555665 799999987442 2221 134555666788777644
No 379
>PRK00509 argininosuccinate synthase; Provisional
Probab=25.15 E-value=3.9e+02 Score=21.99 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=29.5
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+++|+|++++.-.|.-++.++.+. .+ .+++.+++...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG--~eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YG--CEVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hC--CeEEEEEEecC
Confidence 479999999998888888887663 26 78999998654
No 380
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=24.98 E-value=1.4e+02 Score=23.51 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
.+..+.++.++ ++|+||+|.... +..... +.+.-+.+.| ++.||.
T Consensus 174 ~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~--L~v~gi~eAL---~~a~vV 219 (303)
T PRK13606 174 KPAPGVLEAIE--EADAVIIGPSNPVTSIGPI--LAVPGIREAL---TEAPVV 219 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHhhchh--ccchhHHHHH---hCCCEE
Confidence 36788889998 899999997653 222221 3455555666 666666
No 381
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.90 E-value=3.1e+02 Score=20.70 Aligned_cols=78 Identities=9% Similarity=-0.004 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+...+..++++|+..| ++...+|....... . .+...+...+.+.++.+.+++.| +.+-
T Consensus 83 ~~~~~~~~i~~A~~lG--~~~v~~~~g~~~~~----------~--------~~~~~~~~~~~l~~l~~~a~~~g--i~l~ 140 (279)
T cd00019 83 SIERLKDEIERCEELG--IRLLVFHPGSYLGQ----------S--------KEEGLKRVIEALNELIDKAETKG--VVIA 140 (279)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEECCCCCCCC----------C--------HHHHHHHHHHHHHHHHHhccCCC--CEEE
Confidence 4556788899999999 88666544321100 0 01222344456666666666777 6666
Q ss_pred EEEeeCC------hHHHHHHHHhhcC
Q 030672 98 RVVGCGD------AKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g~------~~~~I~~~a~~~~ 117 (173)
.+...+. ..+.+.+..++.+
T Consensus 141 lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 141 LETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 6654332 3466666666443
No 382
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=24.86 E-value=3.1e+02 Score=20.75 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
...+|+.|++|..... .+++++-.+ + ..+..+-|..+.
T Consensus 9 ~~~~~livaLD~~~~~-~~~~~~~~~----~--~~~~~~Kvg~~l 46 (240)
T COG0284 9 AMSRRLIVALDVPTEE-EALAFVDKL----G--PTVDFVKVGKPL 46 (240)
T ss_pred hcccCeEEEECCCCHH-HHHHHHHHh----h--ccccEEEEchHH
Confidence 3445599999998764 345555444 5 455666665543
No 383
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.82 E-value=91 Score=22.35 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.4
Q ss_pred EEEEEecCChHHHHHHHHHHhh
Q 030672 7 RVVVAVDESEESMHALSWCLNN 28 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~l 28 (173)
|+.+.+|++..+.++++.|+..
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~ 22 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKN 22 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHH
Confidence 5788899999999999999775
No 384
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=24.80 E-value=2.7e+02 Score=20.04 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=10.9
Q ss_pred cCCCEEEEecCCC
Q 030672 116 LEADTLVMGSHGY 128 (173)
Q Consensus 116 ~~~dllV~G~~~~ 128 (173)
.++|.||+|+..+
T Consensus 67 ~~aD~ii~GSPty 79 (197)
T TIGR01755 67 ADYDAIIFGTPTR 79 (197)
T ss_pred HHCCEEEEEeccc
Confidence 3899999999765
No 385
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=24.43 E-value=3.6e+02 Score=21.35 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
...+..|+.+++..+ ....=||.-.+.+.....+..+... ...+...++++.+++.+ ... +.++.
T Consensus 76 p~~~~~aA~~~~~~g--~d~IdlN~gCP~~~v~~~~~Gs~L~----------~~p~~~~eiv~avr~~v-~~p--VsvKi 140 (333)
T PRK11815 76 PADLAEAAKLAEDWG--YDEINLNVGCPSDRVQNGRFGACLM----------AEPELVADCVKAMKDAV-SIP--VTVKH 140 (333)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEcCCCCHHHccCCCeeeHHh----------cCHHHHHHHHHHHHHHc-CCc--eEEEE
Confidence 344556666666655 5555555544433322221111111 11233444455544433 122 44443
Q ss_pred EEee-C-C---hHHHHHHHHhhcCCCEEEEec
Q 030672 99 VVGC-G-D---AKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 99 ~~~~-g-~---~~~~I~~~a~~~~~dllV~G~ 125 (173)
.+.. + + ....+++.+.+.++|.+.+-.
T Consensus 141 R~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~ 172 (333)
T PRK11815 141 RIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHA 172 (333)
T ss_pred EeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3322 1 1 134567777888999999853
No 386
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=24.34 E-value=2.4e+02 Score=19.31 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCC---ceEEEEEEeeCChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHHHHh---cC
Q 030672 79 VMNRAEAVYRNFQN---NIHVKRVVGCGDAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSFQFL---PN 149 (173)
Q Consensus 79 ~l~~~~~~~~~~~~---~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~~ll---~~ 149 (173)
+.+-+.+...++++ ++.++|+...=.....+-...+...+|.++. |. +|.+.--. ..-.|++.-++ -+
T Consensus 35 LvkGAiEtm~~~~V~eenI~ie~VPGS~Elp~g~~~~~~r~~~daVi~IGvlIkGsTmHfe---yis~s~~hglm~~~~~ 111 (158)
T KOG3243|consen 35 LVKGAIETMKKYSVREENIEIEWVPGSFELPVGAQNLGKRGKFDAVICIGVLIKGSTMHFE---YISNSAAHGLMSASIN 111 (158)
T ss_pred HHHHHHHHHHHhCcchhceeEEEcCCceeccHHHHhhhhccCceEEEEEEEEEecCchhHH---HHHHHHHHHHhhhccc
Confidence 33334444444442 3666666554455667777788778887654 43 33332222 23555555554 46
Q ss_pred CCCCeehhhH---HHHHHhhcc
Q 030672 150 SQPSRLFGDL---ILFQILQGS 168 (173)
Q Consensus 150 ~~~pvL~~~~---~~~~~~~~~ 168 (173)
+.+||.||=+ .+.|-|.++
T Consensus 112 sgvPvIfGlLTc~~eeQAL~Ra 133 (158)
T KOG3243|consen 112 SGVPVIFGLLTCEDEEQALNRA 133 (158)
T ss_pred CCCCEEEEEeeeccHHHHHHhh
Confidence 8999999754 677777654
No 387
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=24.02 E-value=2.1e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=19.5
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+-.+.|+++++++++|++|.|...
T Consensus 14 ~d~~~l~~~~~~~~id~vi~g~E~ 37 (379)
T PRK13790 14 SDHQAILDFAKQQNVDWVVIGPEQ 37 (379)
T ss_pred CCHHHHHHHHHHhCCCEEEECCcH
Confidence 446888999999999999988754
No 388
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=23.98 E-value=2.8e+02 Score=19.92 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=11.3
Q ss_pred cCCCEEEEecCCCC
Q 030672 116 LEADTLVMGSHGYG 129 (173)
Q Consensus 116 ~~~dllV~G~~~~~ 129 (173)
.++|.||+|+....
T Consensus 68 ~~aD~ii~gsPty~ 81 (200)
T PRK03767 68 ADYDAIIFGTPTRF 81 (200)
T ss_pred HhCCEEEEEecccC
Confidence 38999999987653
No 389
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=1.2e+02 Score=20.18 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=31.8
Q ss_pred hcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHHHHHHh
Q 030672 115 KLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLILFQIL 165 (173)
Q Consensus 115 ~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~~~~~ 165 (173)
+.+++.||+|+...+.+. ++.-+...+++-.|-|..-+-+++-.+
T Consensus 59 ee~~E~ivvGTG~~G~l~------l~~ea~e~~r~k~~~vi~~pT~EAikr 103 (121)
T COG1504 59 EEGPEVIVVGTGQSGMLE------LSEEAREFFRKKGCEVIELPTPEAIKR 103 (121)
T ss_pred hcCCcEEEEecCceeEEE------eCHHHHHHHHhcCCeEEEeCCHHHHHH
Confidence 369999999976654333 666788888888888777665555443
No 390
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=96 Score=20.81 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=19.4
Q ss_pred HHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 107 DVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
-.+.+.+.++++|+||.+.-|++.+.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~ 80 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYN 80 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHH
Confidence 45778888888888888877765544
No 391
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=23.79 E-value=3.1e+02 Score=22.01 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=35.2
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
.++.+. ...++..+.....+-.|++-|++.+...++++.+++..+-
T Consensus 10 il~~Y~-~~~i~Iat~gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y 55 (361)
T COG1759 10 ILENYD-LEDITIATIGSHSALQILDGAKEEGFRTIAVCQRGREKPY 55 (361)
T ss_pred HHHhcc-ccceEEEEeecchHHHHhhhHHhcCCcEEEEEecCccchH
Confidence 344444 2446677777788999999999999999999998876443
No 392
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=23.66 E-value=1.7e+02 Score=17.45 Aligned_cols=42 Identities=7% Similarity=-0.029 Sum_probs=30.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
.||+|.+.=.-......|++-|+.-|...- ..|....|.+..
T Consensus 5 vYK~IelvGtSp~S~d~Ai~~Ai~RA~~t~--~~l~wfeV~~~r 46 (71)
T COG3360 5 VYKKIELVGTSPTSIDAAIANAIARAADTL--DNLDWFEVVETR 46 (71)
T ss_pred eEEEEEEEecCCccHHHHHHHHHHHHHhhh--hcceEEEEEeec
Confidence 677886554444456778888888888776 678888887744
No 393
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=23.64 E-value=64 Score=19.42 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=25.9
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhh
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIK 132 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~ 132 (173)
.+....+.|+.+.+=.. ...++|++|++........
T Consensus 17 ~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~~~ 52 (93)
T cd05403 17 GVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDPLE 52 (93)
T ss_pred CccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCHHH
Confidence 37778888876664444 5669999999988765544
No 394
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.62 E-value=2.1e+02 Score=18.42 Aligned_cols=44 Identities=2% Similarity=-0.175 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEecC-CCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 107 DVICGTVEKLEADTLVMGSH-GYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~-~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
..|.++.++.++|+||--.. +.....+ .|-..++..-...+|++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~-----~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLD-----NDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCcccc-----CcEeeehhhHhhCCccc
Confidence 77999999999999998543 3322111 33344555555666665
No 395
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.61 E-value=4e+02 Score=21.54 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=35.8
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC--CChhhhhhhhcccchHHHHhcCCCCCeehhhHHH
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG--YGFIKRYKQLILAALSFQFLPNSQPSRLFGDLIL 161 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~--~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~~ 161 (173)
.....-++.+++..+|.|.|.-.- -.++. ...++++..++||++..+.-
T Consensus 34 ~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~---------~l~~im~~~p~pVimvsslt 84 (350)
T COG2201 34 RNGREAIDKVKKLKPDVITLDVEMPVMDGLE---------ALRKIMRLRPLPVIMVSSLT 84 (350)
T ss_pred CCHHHHHHHHHhcCCCEEEEecccccccHHH---------HHHHHhcCCCCcEEEEeccc
Confidence 345566788889999999998543 23343 35789999999999966533
No 396
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=23.57 E-value=3e+02 Score=20.14 Aligned_cols=68 Identities=4% Similarity=-0.092 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHh-cCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 78 SVMNRAEAVYRN-FQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 78 ~~l~~~~~~~~~-~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
++.+.+.+.+++ .+ +.+......+++. ...++.....++|-+|+.......... .-..+.+..+|+
T Consensus 16 ~~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~---------~~~~l~~~~iPv 84 (272)
T cd06301 16 LLRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAP---------IVKAANAAGIPL 84 (272)
T ss_pred HHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHH---------HHHHHHHCCCeE
Confidence 344445555555 56 5555543334543 234445566789999886543221111 123345666776
Q ss_pred eh
Q 030672 155 LF 156 (173)
Q Consensus 155 L~ 156 (173)
++
T Consensus 85 v~ 86 (272)
T cd06301 85 VY 86 (272)
T ss_pred EE
Confidence 65
No 397
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=23.53 E-value=3.5e+02 Score=21.40 Aligned_cols=47 Identities=4% Similarity=0.034 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++..+...+..+ +++..............+...+.++|.|+++.++
T Consensus 167 ~le~i~~i~~~~~--vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~g 213 (333)
T TIGR02151 167 WLEKIAEICSQLS--VPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAG 213 (333)
T ss_pred HHHHHHHHHHhcC--CCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 4444444444444 5555443321245677788888999999998665
No 398
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=23.30 E-value=3.1e+02 Score=21.97 Aligned_cols=49 Identities=4% Similarity=-0.031 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+++..+...+..+ +++-.............+.+.+.++|.|+++.+|.
T Consensus 173 ~~le~i~~i~~~~~--vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 173 GWLDNIAEIVSALP--VPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHHHHhhC--CCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCC
Confidence 34455555554444 55555444222335666778888999999977653
No 399
>PRK08349 hypothetical protein; Validated
Probab=23.26 E-value=2.9e+02 Score=19.81 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.6
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.++++++++...|.-++.++.. .+ .+++++|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g--~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RG--VEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cC--CeEEEEEEeC
Confidence 3789999999988877765544 36 8999999964
No 400
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=23.22 E-value=2.2e+02 Score=18.46 Aligned_cols=47 Identities=4% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEE
Q 030672 73 SESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLV 122 (173)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV 122 (173)
....+.-+....+.+++.| -.+.+....+ +.+.+-+|++.++..+++
T Consensus 59 nk~~R~QiK~TieaA~q~g--kka~f~F~~~-v~~kv~eY~e~~G~~Vii 105 (109)
T PF15647_consen 59 NKKTRNQIKATIEAAEQQG--KKAYFWFKGE-VHDKVKEYIERYGGKVII 105 (109)
T ss_pred hHHHHHHHHHHHHHHHHhC--CeEEEEeccc-ccHHHHHHHHHcCcEEEe
Confidence 3444455555556666666 5666555444 889999999998887765
No 401
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.20 E-value=1.3e+02 Score=19.45 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
..+.+++.++.|-++...++. ++.|+..+ +++..+.
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~-~~~a~~~g--~~iI~IT 77 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSA-VEQAKERG--AKIVAIT 77 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHH-HHHHHHCC--CEEEEEe
Confidence 456789999998877766654 44566667 7777765
No 402
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.15 E-value=3.9e+02 Score=21.31 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
.+..+...+++.| .++....+.- +.+.+.++.++++..++|.++.+....
T Consensus 15 fFk~~I~eL~~~G--heV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~K 64 (335)
T PF04007_consen 15 FFKNIIRELEKRG--HEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGK 64 (335)
T ss_pred HHHHHHHHHHhCC--CEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHH
Confidence 5556666666677 7776666654 455666678899999999999654443
No 403
>PLN02880 tyrosine decarboxylase
Probab=23.11 E-value=4.6e+02 Score=22.08 Aligned_cols=26 Identities=8% Similarity=-0.248 Sum_probs=22.2
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+|.++|.+.++++++-+.|=|..|..
T Consensus 256 Dpl~eI~~i~~~~~iwlHVDaA~gg~ 281 (490)
T PLN02880 256 DPLLELGKIAKSNGMWFHVDAAYAGS 281 (490)
T ss_pred CcHHHHHHHHHHcCCEEEEehhhHHH
Confidence 78999999999999998888776643
No 404
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.05 E-value=3.2e+02 Score=20.32 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEec
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~ 125 (173)
.++++.+.+.+++.| ..+......+++. ..+++.....++|-+|+-.
T Consensus 16 ~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 16 LGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGG 64 (280)
T ss_pred HHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 345666666666777 5544433333443 3567778888999999864
No 405
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=22.97 E-value=1.1e+02 Score=24.90 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=28.2
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+.+.| +++..+..-.--.+++++.|.++++.|+.-|.+.
T Consensus 348 ~Aa~~G--V~aIiQPGGSiRD~evI~aane~giaMvfTg~Rh 387 (390)
T PRK07106 348 RAAKSG--VKYIAQPGGSIRDDNVIETCNKYGMTMAFTGVRL 387 (390)
T ss_pred HHHHcC--CEEEECCCCCCCcHHHHHHHHHhCCEEEECCCCC
Confidence 444555 5554444434557899999999999999988754
No 406
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=22.94 E-value=84 Score=24.61 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=28.2
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+....++.++ ++|+||+|.... +..-.. + .=.-...-++++++|+++.
T Consensus 172 ~~~p~~l~AI~--~AD~IiigPgs~~TSI~P~--L-~v~gi~~Ai~~s~a~kV~V 221 (300)
T PF01933_consen 172 KANPEALEAIE--EADLIIIGPGSLYTSIIPN--L-LVPGIREAIRESKAPKVYV 221 (300)
T ss_dssp -B-HHHHHHHH--H-SEEEE-SS-CCCCCHHH--H-TSHHHHHHHHHSSSEEEEE
T ss_pred CCCHHHHHHHH--hCCEEEEcCCCchhhhccc--c-cchhHHHHHHhCCCCEEEE
Confidence 45688889999 899999996543 333332 2 3333455566666877763
No 407
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=22.82 E-value=1.1e+02 Score=22.99 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=22.5
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEE
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVM 123 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~ 123 (173)
-+++.....-++..++++.|.+.++|+||.
T Consensus 30 ~~v~~V~~~ld~t~~vi~~A~~~~~dlIIt 59 (241)
T PF01784_consen 30 QEVKKVLVALDATPEVIEEAIEKGADLIIT 59 (241)
T ss_dssp SBESEEEEESS-SHHHHHHHHHTT-SEEEE
T ss_pred cccCEEEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 445566666699999999999999998775
No 408
>PRK10799 metal-binding protein; Provisional
Probab=22.78 E-value=1.2e+02 Score=22.78 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEE
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVM 123 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~ 123 (173)
++.....-++..++++.|.+.++|+||.
T Consensus 35 v~~I~~alD~t~~vi~~A~~~~~dlIit 62 (247)
T PRK10799 35 VQKIVTGVTASQALLDEAVRLQADAVIV 62 (247)
T ss_pred ccEEEEEeCCCHHHHHHHHHCCCCEEEE
Confidence 4444444588889999999999999984
No 409
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=22.77 E-value=5.4e+02 Score=22.77 Aligned_cols=100 Identities=7% Similarity=0.030 Sum_probs=59.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCC---CCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPD---TNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~---~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
.++.|=|++.++.....|+..|..+.+... + .++.+.|.-+. .... ++.+.+ ..+-..+.
T Consensus 522 ~~~~v~vavEGNSsQdsaVaIa~~i~~~~~~~~~-~~~~F~H~~~~-~~v~---~P~yll------------~~~K~~Af 584 (668)
T PHA03372 522 FFTEVRIAIEGNSNQAAAVRIACIIKQSIQCNKL-IRVTFFHTPDQ-NQIE---QPFYLL------------GREKRLAV 584 (668)
T ss_pred ccceEEEEEecCccHHHHHHHHHHHHHHhhccCC-cceEEEecCCC-Cccc---Ccchhh------------ccchhHHH
Confidence 367788999998888888888888876652 1 56788877332 2111 111111 11223345
Q ss_pred HHHHHHHHhcCCceEEEEEE-----e-eCChHHHHHHHHhhcCCCEEEEe
Q 030672 81 NRAEAVYRNFQNNIHVKRVV-----G-CGDAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~-----~-~g~~~~~I~~~a~~~~~dllV~G 124 (173)
+.+...+..-. +...-.+ . .-||.+-+++..+ ++.-++..
T Consensus 585 e~FI~~fNsg~--i~ASQ~lvS~Tikl~~DPv~YL~~Qi~--ni~~~~~~ 630 (668)
T PHA03372 585 EQFISNFNSGY--IKASQELVSFTIKITYDPVEYLLEQIK--NIHRITVN 630 (668)
T ss_pred HHHHHHhcCCc--eEeeeeeeeeeeeeccChHHHHHHHHh--hcEEEecC
Confidence 55555554333 3333222 2 3499999999999 88877774
No 410
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.59 E-value=3.4e+02 Score=20.99 Aligned_cols=74 Identities=9% Similarity=-0.044 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+.+.++++| +.....+--..+.+-+-+.++...--+-.++..|-++.+......+.....++=..+.+||+.|
T Consensus 138 ~~~~~~~~~g--i~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vG 211 (265)
T COG0159 138 ELLKAAEKHG--IDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVG 211 (265)
T ss_pred HHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEe
Confidence 4555666777 6666666555665655555554434444445445444433110113334445555578888874
No 411
>PLN02285 methionyl-tRNA formyltransferase
Probab=22.57 E-value=4e+02 Score=21.18 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCCEEEEecCCC
Q 030672 107 DVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+++..++.++|++|+..-++
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ 104 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN 104 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh
Confidence 4567778889999999986554
No 412
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=22.48 E-value=4.2e+02 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=22.4
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
++++..-........|..... ++|.+|+|+...
T Consensus 279 ~~v~~~~~~~~~~~~i~~~~~--~~d~ii~GspT~ 311 (394)
T PRK11921 279 VTVKLYNSAKSDKNDIITEVF--KSKAILVGSSTI 311 (394)
T ss_pred CeEEEEECCCCCHHHHHHHHH--hCCEEEEECCCc
Confidence 666655555544566665555 799999998764
No 413
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.42 E-value=4e+02 Score=21.10 Aligned_cols=125 Identities=15% Similarity=0.098 Sum_probs=68.5
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
+.|=+-+|+. ..+..|+.++...+ ....=|++--|.+.....+..+..+. ..+...+.++...+..
T Consensus 69 ~~vQl~gsdp--~~l~eaA~~~~~~g--~~~IdlN~GCP~~~V~~~g~Ga~Ll~----------~p~lv~~iv~a~~~av 134 (323)
T COG0042 69 VAVQLGGSDP--ELLAEAAKIAEELG--ADIIDLNCGCPSPKVVKGGAGAALLK----------NPELLAEIVKAMVEAV 134 (323)
T ss_pred EEEEecCCCH--HHHHHHHHHHHhcC--CCEEeeeCCCChHHhcCCCcchhhcC----------CHHHHHHHHHHHHHhh
Confidence 3444444444 67778888888877 66666777655544332222211111 1233344555555544
Q ss_pred HhcCCceEEEEEEeeC-Ch----HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccc----hHHHHhcCCC-CCeeh
Q 030672 88 RNFQNNIHVKRVVGCG-DA----KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAA----LSFQFLPNSQ-PSRLF 156 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g-~~----~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs----~~~~ll~~~~-~pvL~ 156 (173)
. . ++++..++.| +. ...|.+.+.+.+++.+.+=.+.+ ..+ ..|+ ....+-...+ +||+.
T Consensus 135 ~--~--iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr--~~~----y~~~ad~~~I~~vk~~~~~ipvi~ 203 (323)
T COG0042 135 G--D--IPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR--AQG----YLGPADWDYIKELKEAVPSIPVIA 203 (323)
T ss_pred C--C--CCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccH--Hhc----CCCccCHHHHHHHHHhCCCCeEEe
Confidence 3 2 5566666655 22 45799999999999999843332 211 1221 2334455566 88888
No 414
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=22.37 E-value=4.6e+02 Score=21.81 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
|...+..|||.-|.+.+-.-+..-.+.-|.. ++++..+++..
T Consensus 225 ~~AGPSEvlViAD~ta~p~~vA~DLLsQAEH-d~~a~aiLvT~ 266 (425)
T COG0141 225 MIAGPSEVLVIADETANPDFVAADLLSQAEH-DPDAQAILVTD 266 (425)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHhhc-CCCceEEEEeC
Confidence 5668899999999987765544444444443 44477777654
No 415
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.33 E-value=3.3e+02 Score=20.21 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.2
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+..+-..+++.+.|++++|...
T Consensus 101 ~vAKiLk~~vekek~~lVllGKQA 124 (254)
T KOG3180|consen 101 HVAKILKKLVEKEKSDLVLLGKQA 124 (254)
T ss_pred HHHHHHHHHHHhhcCCEEEEcccc
Confidence 456667778999999999999654
No 416
>PRK08227 autoinducer 2 aldolase; Validated
Probab=22.11 E-value=3.7e+02 Score=20.68 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeC----ChHHHH---HHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCG----DAKDVI---CGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS 150 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g----~~~~~I---~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~ 150 (173)
+.+.+..+.+.++| +++-...-.| +..+.| ...+-+.++|+|=+-..+ .. -.+++..|
T Consensus 127 ~~l~~v~~ea~~~G--~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~----~~---------f~~vv~a~ 191 (264)
T PRK08227 127 KNIIQLVDAGLRYG--MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE----EG---------FERITAGC 191 (264)
T ss_pred HHHHHHHHHHHHhC--CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH----HH---------HHHHHHcC
Confidence 34556667777888 5544432333 122322 345668889988665543 11 25677799
Q ss_pred CCCeeh
Q 030672 151 QPSRLF 156 (173)
Q Consensus 151 ~~pvL~ 156 (173)
++||++
T Consensus 192 ~vPVvi 197 (264)
T PRK08227 192 PVPIVI 197 (264)
T ss_pred CCcEEE
Confidence 999999
No 417
>COG1162 Predicted GTPases [General function prediction only]
Probab=22.02 E-value=4e+02 Score=21.01 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=55.7
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
+|..-.-+-+...++.++-+|...+. .++.+|+=.+-.... .... +......+
T Consensus 86 Ivs~~~P~~~~~~ldR~Lv~ae~~gi-~pvIvlnK~DL~~~~------------------------~~~~--~~~~~~y~ 138 (301)
T COG1162 86 VVSLVDPDFNTNLLDRYLVLAEAGGI-EPVIVLNKIDLLDDE------------------------EAAV--KELLREYE 138 (301)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCC-cEEEEEEccccCcch------------------------HHHH--HHHHHHHH
Confidence 33444455577888888888888886 677777666643211 0010 23333444
Q ss_pred hcCCceEEEEEE-eeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 89 NFQNNIHVKRVV-GCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 89 ~~~~~v~~~~~~-~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+.| +.+-..- ..+...+++..+.+ +=-.+++|.+|-+
T Consensus 139 ~~g--y~v~~~s~~~~~~~~~l~~~l~--~~~svl~GqSGVG 176 (301)
T COG1162 139 DIG--YPVLFVSAKNGDGLEELAELLA--GKITVLLGQSGVG 176 (301)
T ss_pred hCC--eeEEEecCcCcccHHHHHHHhc--CCeEEEECCCCCc
Confidence 555 5555444 34577888888888 4488888988754
No 418
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=21.90 E-value=3.3e+02 Score=22.34 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+.+-+.+.| +.++..-.......+|.+.+. +++-+|+|+...
T Consensus 263 ma~aiaegl~~~g--v~v~~~~~~~~~~~eI~~~i~--~a~~~vvGsPT~ 308 (388)
T COG0426 263 MAQAIAEGLMKEG--VDVEVINLEDADPSEIVEEIL--DAKGLVVGSPTI 308 (388)
T ss_pred HHHHHHHHhhhcC--CceEEEEcccCCHHHHHHHHh--hcceEEEecCcc
Confidence 4444455556677 888888777777888999888 899999998763
No 419
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.84 E-value=3.7e+02 Score=20.50 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++.+.+.+.+ +++........ -...+.+.+.+.++|.||+. .|-+.+..
T Consensus 20 ~~~~i~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~-GGDGTl~~ 72 (293)
T TIGR00147 20 PLREVIMLLREEG--MEIHVRVTWEKGDAARYVEEARKFGVDTVIAG-GGDGTINE 72 (293)
T ss_pred HHHHHHHHHHHCC--CEEEEEEecCcccHHHHHHHHHhcCCCEEEEE-CCCChHHH
Confidence 3444555566666 66655444331 23344544555578877663 33344444
No 420
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=21.73 E-value=3.5e+02 Score=20.24 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~ 126 (173)
..+++.+.+.+++.| ..+......+++. ..+++.+...++|-+|+...
T Consensus 15 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 15 IRDRPNFEAALKELG--AEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 345556666666677 6655544444443 35555566678998888653
No 421
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.57 E-value=3.4e+02 Score=19.96 Aligned_cols=49 Identities=4% Similarity=-0.057 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+.+.+.+.+++.| +.+...-..++.. ..+++.....++|-+|+....
T Consensus 15 ~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 15 TAETKSIKDAAEKRG--FDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHHHHHHHhcC--CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 446666667777777 6665543333443 344555666789988886533
No 422
>PLN02329 3-isopropylmalate dehydrogenase
Probab=21.51 E-value=1e+02 Score=25.40 Aligned_cols=28 Identities=7% Similarity=-0.095 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+++.+++|+++|++.+ .+|+++|=..
T Consensus 211 ~~~eRI~r~AFe~A~~r~--~kVT~v~KaN 238 (409)
T PLN02329 211 HEIDRIARVAFETARKRR--GKLCSVDKAN 238 (409)
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEECCC
Confidence 458899999999999887 6777776544
No 423
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=21.44 E-value=4.4e+02 Score=21.27 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=47.9
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
+||+|+.++.=.|.- |+.+.++.| .+|+.++...-...... ...--..+-++.+++
T Consensus 1 ~kV~vamSGGVDSsv----aA~LLk~~G--~~V~Gv~m~~~~~~~~~------------------~~~c~~~~d~~~a~~ 56 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSV----AAALLKEQG--YDVIGVTMRNWDEEDES------------------GKSCCSEEDIEDARR 56 (356)
T ss_dssp -EEEEE--SSHHHHH----HHHHHHHCT---EEEEEEEE-SS-SSSH------------------H-HHHHHHHHHHHHH
T ss_pred CeEEEEccCCHHHHH----HHHHHHhhc--ccceEEEEEEecccccc------------------CCCCCchhhHHHHHH
Confidence 589999999666543 334455567 89999988654321100 011222344556666
Q ss_pred HHHhcCCceEEEEEEe-----------------eC-C--h---------HHHHHHHHhh-cCCCEEEEec
Q 030672 86 VYRNFQNNIHVKRVVG-----------------CG-D--A---------KDVICGTVEK-LEADTLVMGS 125 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~-----------------~g-~--~---------~~~I~~~a~~-~~~dllV~G~ 125 (173)
.++..+ ++....=. .| . | ...++++|++ .++|.|.-|.
T Consensus 57 va~~Lg--Ip~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGH 124 (356)
T PF03054_consen 57 VAEKLG--IPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGH 124 (356)
T ss_dssp HHHHHT----EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---
T ss_pred HHHhcC--CCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccce
Confidence 666666 54433322 13 1 2 4678899998 9999999986
No 424
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.40 E-value=3.4e+02 Score=20.61 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
...+..+.+.+++.| ++++..+ +|..+=++.|++.++|.|=+=+
T Consensus 112 ~~~l~~~i~~L~~~g--IrVSLFi---dP~~~qi~~A~~~GAd~VELhT 155 (239)
T PRK05265 112 FDKLKPAIARLKDAG--IRVSLFI---DPDPEQIEAAAEVGADRIELHT 155 (239)
T ss_pred HHHHHHHHHHHHHCC--CEEEEEe---CCCHHHHHHHHHhCcCEEEEec
Confidence 346777777778888 8777777 6777788999999999887754
No 425
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=21.32 E-value=1.6e+02 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=17.1
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhh
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNN 28 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~l 28 (173)
|.. ..||||.=++ ..++|+.|++.-
T Consensus 1 ~~~-~~kvLviG~g--~rehal~~~~~~ 25 (426)
T PRK13789 1 MQV-KLKVLLIGSG--GRESAIAFALRK 25 (426)
T ss_pred CCC-CcEEEEECCC--HHHHHHHHHHHh
Confidence 443 4577776555 668899998864
No 426
>PRK09271 flavodoxin; Provisional
Probab=21.28 E-value=1.9e+02 Score=19.98 Aligned_cols=10 Identities=20% Similarity=0.528 Sum_probs=7.4
Q ss_pred CCCEEEEecC
Q 030672 117 EADTLVMGSH 126 (173)
Q Consensus 117 ~~dllV~G~~ 126 (173)
++|.|++|+.
T Consensus 51 ~~d~vilgt~ 60 (160)
T PRK09271 51 DYDLYLLGTW 60 (160)
T ss_pred cCCEEEEECc
Confidence 6777888774
No 427
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=21.18 E-value=3.4e+02 Score=19.88 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-
Q 030672 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH- 95 (173)
Q Consensus 17 ~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~- 95 (173)
....+.++.++++...+ .++.+|-.-...+ ....+.+.+.+++.| ..
T Consensus 13 ~~~~i~~~~~~~ag~~~--~~i~~iptA~~~~----------------------------~~~~~~~~~~~~~lG--~~~ 60 (217)
T cd03145 13 DNRAILQRFVARAGGAG--ARIVVIPAASEEP----------------------------AEVGEEYRDVFERLG--ARE 60 (217)
T ss_pred CHHHHHHHHHHHcCCCC--CcEEEEeCCCcCh----------------------------hHHHHHHHHHHHHcC--Cce
Confidence 56778888899887545 6776553322110 112333344444445 43
Q ss_pred EEEEEee---CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhc
Q 030672 96 VKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLP 148 (173)
Q Consensus 96 ~~~~~~~---g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~ 148 (173)
++..... ......+.+... ++|.|+++......+.+ .+.++...+.++
T Consensus 61 v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~~~~~~~---~l~~t~l~~~l~ 111 (217)
T cd03145 61 VEVLVIDSREAANDPEVVARLR--DADGIFFTGGDQLRITS---ALGGTPLLDALR 111 (217)
T ss_pred eEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCcHHHHHH---HHcCChHHHHHH
Confidence 3333222 123456677777 99999998654433333 345555555444
No 428
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=21.17 E-value=1.3e+02 Score=20.40 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=30.2
Q ss_pred CChHHHHHHHHh---hcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 103 GDAKDVICGTVE---KLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 103 g~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
|...+.+.++.+ ..+.-.-|+|+..+++-.. ++-.++.+..+..+|+++
T Consensus 56 G~vP~~v~~Fl~~~~n~~~~~gV~gsGnr~~g~~-----f~~a~~~i~~~~~vp~l~ 107 (134)
T PRK03600 56 GAVPKQVIRFLNDEHNRKLLRGVIASGNRNFGDA-----FALAGDVISAKCQVPLLY 107 (134)
T ss_pred CcccHHHHHHHhccccCCcEEEEEEecCchHHHH-----HHHHHHHHHHHhCCCeEE
Confidence 456677777663 2233344555544443232 677788888889999886
No 429
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=21.16 E-value=96 Score=24.87 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
...+++.+++|+++|+..+. .+|+.+|=....
T Consensus 155 r~~~eRI~r~AFe~A~~R~~-kkvTsv~KaNVl 186 (348)
T COG0473 155 RKGSERIARFAFELARKRGR-KKVTSVHKANVL 186 (348)
T ss_pred HHHHHHHHHHHHHHHHhhCC-CceEEEehhhhh
Confidence 34578999999999999832 799998875543
No 430
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=21.13 E-value=3.7e+02 Score=21.50 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=34.2
Q ss_pred HhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHH-hcCCCCCeeh
Q 030672 88 RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQF-LPNSQPSRLF 156 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~l-l~~~~~pvL~ 156 (173)
.+.| ++++ +..++..-.+. ++.++|.+++|...-......+ --.|+-.-.+ .++..+|++.
T Consensus 203 ~~~G--I~vt--lI~Dsav~~~m---~~~~vd~VivGAd~v~~nG~v~-nkiGT~~lA~~Ak~~~vPfyV 264 (331)
T TIGR00512 203 VQEG--IPAT--LITDSMAAHLM---KHGEVDAVIVGADRIAANGDTA-NKIGTYQLAVLAKHHGVPFYV 264 (331)
T ss_pred HHCC--CCEE--EEcccHHHHHh---cccCCCEEEEcccEEecCCCEe-ehhhHHHHHHHHHHhCCCEEE
Confidence 3456 6554 33333333333 3458999999987632222211 1266655544 5778899886
No 431
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.81 E-value=3.3e+02 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=19.3
Q ss_pred EeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 100 VGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 100 ~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.|....+-+..+.+.++|.+|+|+.
T Consensus 177 ~VdGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 177 QVDGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchH
Confidence 344555555666777789999999964
No 432
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.79 E-value=2.5e+02 Score=18.24 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=32.9
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.++.+++.| .+++..-.. ..++.++.. ++|++.+|..-+--+. ...+++....+||-.
T Consensus 21 m~~aA~~kg--~~~~I~A~s---~~e~~~~~~--~~DvvLlGPQv~y~~~---------~~~~~~~~~giPV~v 78 (102)
T COG1440 21 MKKAAESKG--KDVTIEAYS---ETELSEYID--NADVVLLGPQVRYMLK---------QLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHhCC--CceEEEEec---hhHHHHhhh--cCCEEEEChHHHHHHH---------HHHHHhcccCCCeEE
Confidence 334444456 555544333 334445555 9999999975543232 346666676667654
No 433
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=20.47 E-value=4.2e+02 Score=20.66 Aligned_cols=60 Identities=8% Similarity=-0.100 Sum_probs=33.3
Q ss_pred eEEEEEEeeC-----ChHHHHHHHHhhcCCCEEEEecCCCC-hhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 94 IHVKRVVGCG-----DAKDVICGTVEKLEADTLVMGSHGYG-FIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-----~~~~~I~~~a~~~~~dllV~G~~~~~-~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+++...+..| ....++++.+++.++|.|++..+... ...+. ..=.....+....++||+.
T Consensus 132 ~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~ipvi~ 197 (319)
T TIGR00737 132 IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGE---ANWDIIARVKQAVRIPVIG 197 (319)
T ss_pred CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCc---hhHHHHHHHHHcCCCcEEE
Confidence 4455555433 12456777788889999988543211 11110 0112345666667889887
No 434
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.42 E-value=1.8e+02 Score=21.20 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..++.+.+++.| ..+-..+--+.+.+.+..+.. ..|+|.+=+...
T Consensus 94 ~~~~i~~ik~~g--~k~GialnP~T~~~~~~~~l~--~vD~VlvMsV~P 138 (201)
T PF00834_consen 94 PKETIKYIKEAG--IKAGIALNPETPVEELEPYLD--QVDMVLVMSVEP 138 (201)
T ss_dssp HHHHHHHHHHTT--SEEEEEE-TTS-GGGGTTTGC--CSSEEEEESS-T
T ss_pred HHHHHHHHHHhC--CCEEEEEECCCCchHHHHHhh--hcCEEEEEEecC
Confidence 334555566677 777777777888899988888 889865544433
No 435
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=20.21 E-value=3.7e+02 Score=19.87 Aligned_cols=78 Identities=9% Similarity=-0.078 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEee-CCh---------HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccch
Q 030672 73 SESVNSVMNRAEAVYRNFQNNIHVKRVVGC-GDA---------KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAAL 142 (173)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~-g~~---------~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~ 142 (173)
.....+.+.++.+.+++++ +++..+..- +.. .....+.+.+.++|.|=..+.+..+.. .---..
T Consensus 107 ~~~~~~~i~~v~~~~~~~g--l~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t----~~~~~~ 180 (236)
T PF01791_consen 107 EDEVIEEIAAVVEECHKYG--LKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGAT----PEDVEL 180 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSE--EEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC--cEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcccccc----HHHHHH
Confidence 4455566777777888887 766655222 211 244556677999999998876321111 001123
Q ss_pred HHHHhcCCCCC----eeh
Q 030672 143 SFQFLPNSQPS----RLF 156 (173)
Q Consensus 143 ~~~ll~~~~~p----vL~ 156 (173)
-.+++..+++| |.+
T Consensus 181 ~~~~~~~~~~p~~~~Vk~ 198 (236)
T PF01791_consen 181 MRKAVEAAPVPGKVGVKA 198 (236)
T ss_dssp HHHHHHTHSSTTTSEEEE
T ss_pred HHHHHHhcCCCcceEEEE
Confidence 46788889999 888
No 436
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=20.21 E-value=1.4e+02 Score=22.55 Aligned_cols=47 Identities=4% Similarity=-0.026 Sum_probs=28.3
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCC-CChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHG-YGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~-~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
...+..++.+.+.+.|.+++|.+. ...+. .+...+-+..++||.+-+
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~~~~~~d--------~vv~~ik~~~~lPvilfP 66 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSDTGVTLD--------NVVALIKRVTDLPVILFP 66 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-STHCHHHH--------HHHHHHHHHSSS-EEEET
T ss_pred CCcHHHHHHHHhcCCCEEEECCCCCccchH--------HHHHHHHhcCCCCEEEeC
Confidence 345677778888999999999766 22233 334444444888888743
No 437
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=20.20 E-value=3.2e+02 Score=21.92 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCCh----HHHHHHHHhhcCCCEEEE
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDA----KDVICGTVEKLEADTLVM 123 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV~ 123 (173)
.++..+.+++.+ +++......++| .+.+.+.+++.++|.||-
T Consensus 36 ~~~v~~~L~~~g--~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 81 (374)
T cd08183 36 AAWLIEALRAAG--IEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIA 81 (374)
T ss_pred HHHHHHHHHHcC--CeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 344444455566 665544344554 345667788899998654
No 438
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=3.8e+02 Score=19.98 Aligned_cols=36 Identities=6% Similarity=-0.027 Sum_probs=19.3
Q ss_pred cCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 116 LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 116 ~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+.++++..-..+++... .|.-.-.|.+.+.+|++.
T Consensus 116 ~G~~i~itpDgPkGp~~~-----~~~Gii~LA~~sg~pi~p 151 (214)
T COG2121 116 QGKSIAITPDGPKGPVHK-----IGDGIIALAQKSGVPIIP 151 (214)
T ss_pred CCCcEEEcCCCCCCCcee-----ccchhhHhhHhcCCCeEE
Confidence 344544443333334433 555566677777777664
No 439
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=20.17 E-value=3.6e+02 Score=19.77 Aligned_cols=44 Identities=11% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHH------hhcCCCEEEEe
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTV------EKLEADTLVMG 124 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a------~~~~~dllV~G 124 (173)
.+.++.+.+++.+ ..+-.-...+|.......++ .+.++|.+.+-
T Consensus 43 ~l~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~ 92 (226)
T PF00215_consen 43 ALPEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVH 92 (226)
T ss_dssp HHHHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEE
T ss_pred hHHHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEe
Confidence 3444444444444 44444445556666666665 47777776653
No 440
>PRK02628 nadE NAD synthetase; Reviewed
Probab=20.15 E-value=6.1e+02 Score=22.42 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=27.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCC-CCeEEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDT-NNTLVLLYV 43 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~-~~~l~~l~v 43 (173)
..++++|++++...|.-++..+.+.....+. ..+|+.++.
T Consensus 360 ~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 360 GLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 4789999999998888666666665433331 156777766
No 441
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=20.10 E-value=2e+02 Score=21.21 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLP 48 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~ 48 (173)
....|++++++|-+....+.. +..+++.+ .+|..+.-.+..+
T Consensus 85 ~~~DvviaiS~SGeT~el~~~-~~~aK~~g--~~liaiT~~~~Ss 126 (202)
T COG0794 85 TPGDVVIAISGSGETKELLNL-APKAKRLG--AKLIAITSNPDSS 126 (202)
T ss_pred CCCCEEEEEeCCCcHHHHHHH-HHHHHHcC--CcEEEEeCCCCCh
Confidence 567899999999987766554 45578888 8999888777553
No 442
>PRK06849 hypothetical protein; Provisional
Probab=20.06 E-value=3.5e+02 Score=21.67 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
||+ +++|||.-.... .++..|..+.+. | .+++++..
T Consensus 1 ~~~-~~~VLI~G~~~~---~~l~iar~l~~~-G--~~Vi~~d~ 36 (389)
T PRK06849 1 MNT-KKTVLITGARAP---AALELARLFHNA-G--HTVILADS 36 (389)
T ss_pred CCC-CCEEEEeCCCcH---HHHHHHHHHHHC-C--CEEEEEeC
Confidence 554 577777644433 456666666553 6 78777744
Done!