Query 030672
Match_columns 173
No_of_seqs 130 out of 1099
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mjh_A Protein (ATP-binding do 99.9 9.7E-27 3.3E-31 163.2 16.1 150 1-158 1-158 (162)
2 3s3t_A Nucleotide-binding prot 99.9 4.5E-27 1.6E-31 162.1 14.0 141 3-157 3-145 (146)
3 3idf_A USP-like protein; unive 99.9 3.2E-26 1.1E-30 156.4 14.7 135 5-157 1-137 (138)
4 2dum_A Hypothetical protein PH 99.9 4.5E-26 1.5E-30 161.1 13.4 151 1-158 1-155 (170)
5 3hgm_A Universal stress protei 99.9 3.2E-27 1.1E-31 162.9 7.2 142 5-156 2-146 (147)
6 3fg9_A Protein of universal st 99.9 1.4E-25 4.9E-30 156.4 13.4 137 4-157 14-155 (156)
7 1tq8_A Hypothetical protein RV 99.9 7.2E-26 2.5E-30 159.5 11.0 141 3-159 15-158 (163)
8 3dlo_A Universal stress protei 99.9 1.8E-25 6.2E-30 156.2 12.5 131 4-157 23-154 (155)
9 2gm3_A Unknown protein; AT3G01 99.9 4.8E-25 1.6E-29 156.6 14.7 148 3-158 3-162 (175)
10 2z08_A Universal stress protei 99.9 2.6E-25 8.9E-30 151.9 9.9 134 5-157 2-136 (137)
11 3fdx_A Putative filament prote 99.9 5.1E-25 1.7E-29 151.2 9.5 139 5-157 1-142 (143)
12 3tnj_A Universal stress protei 99.9 2.2E-24 7.6E-29 149.2 9.6 140 4-158 5-146 (150)
13 3olq_A Universal stress protei 99.9 6.4E-23 2.2E-27 158.0 12.4 143 4-158 6-149 (319)
14 1jmv_A USPA, universal stress 99.9 3.6E-23 1.2E-27 141.7 8.3 134 5-158 2-137 (141)
15 3loq_A Universal stress protei 99.9 1.3E-22 4.6E-27 154.8 9.2 142 1-158 18-161 (294)
16 3mt0_A Uncharacterized protein 99.9 4.5E-22 1.5E-26 151.7 11.5 139 4-162 133-279 (290)
17 3cis_A Uncharacterized protein 99.9 8E-22 2.7E-26 151.6 11.4 139 3-158 17-160 (309)
18 3ab8_A Putative uncharacterize 99.9 4.2E-22 1.4E-26 150.0 8.7 144 6-158 1-148 (268)
19 3mt0_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 150.8 8.8 124 1-158 3-127 (290)
20 1q77_A Hypothetical protein AQ 99.8 1E-20 3.5E-25 129.0 11.4 133 4-157 3-137 (138)
21 3loq_A Universal stress protei 99.8 9.3E-21 3.2E-25 144.6 11.8 122 3-158 168-289 (294)
22 3olq_A Universal stress protei 99.8 9.4E-21 3.2E-25 145.9 9.6 141 4-159 155-305 (319)
23 3cis_A Uncharacterized protein 99.8 2.8E-20 9.4E-25 143.0 11.9 134 4-158 170-305 (309)
24 3ab8_A Putative uncharacterize 99.8 1E-18 3.4E-23 131.5 9.6 115 4-157 153-267 (268)
25 2iel_A Hypothetical protein TT 96.7 0.062 2.1E-06 35.7 11.9 128 5-155 1-131 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 96.3 0.06 2.1E-06 43.3 11.6 98 3-128 16-130 (464)
27 1wy5_A TILS, hypothetical UPF0 96.1 0.097 3.3E-06 39.8 11.3 96 3-127 22-135 (317)
28 3umv_A Deoxyribodipyrimidine p 94.1 0.26 8.9E-06 40.1 8.6 84 19-124 53-136 (506)
29 2xry_A Deoxyribodipyrimidine p 93.9 0.34 1.1E-05 39.1 8.8 87 19-128 52-138 (482)
30 1zun_A Sulfate adenylyltransfe 92.3 0.97 3.3E-05 34.5 8.9 93 5-128 46-157 (325)
31 3tqr_A Phosphoribosylglycinami 92.2 1.3 4.5E-05 31.7 9.0 89 1-128 1-94 (215)
32 3ih5_A Electron transfer flavo 92.0 0.46 1.6E-05 34.2 6.5 87 4-127 2-101 (217)
33 1k92_A Argininosuccinate synth 90.7 5.5 0.00019 31.9 12.1 37 4-46 9-45 (455)
34 3g40_A Na-K-CL cotransporter; 90.5 0.2 6.9E-06 37.6 3.3 94 21-156 181-274 (294)
35 4b4k_A N5-carboxyaminoimidazol 90.2 2.5 8.4E-05 29.4 8.3 53 79-133 37-93 (181)
36 3tvs_A Cryptochrome-1; circadi 89.8 1.1 3.9E-05 36.6 7.5 88 19-127 19-109 (538)
37 1ni5_A Putative cell cycle pro 89.1 3.5 0.00012 32.6 9.8 94 4-128 12-119 (433)
38 2der_A TRNA-specific 2-thiouri 88.9 6.3 0.00022 30.7 10.9 100 1-127 13-142 (380)
39 2yxb_A Coenzyme B12-dependent 88.7 1.3 4.4E-05 30.2 6.1 69 84-161 39-110 (161)
40 1ccw_A Protein (glutamate muta 88.4 1.4 4.8E-05 29.1 6.0 69 83-159 23-93 (137)
41 2ywx_A Phosphoribosylaminoimid 87.9 4.1 0.00014 27.6 8.0 53 79-133 14-67 (157)
42 2nz2_A Argininosuccinate synth 87.7 8.1 0.00028 30.5 10.9 36 5-46 5-40 (413)
43 1efp_B ETF, protein (electron 87.7 1.2 4.2E-05 32.7 5.8 80 13-129 34-125 (252)
44 3g40_A Na-K-CL cotransporter; 87.6 5.1 0.00018 30.1 9.0 95 6-129 21-121 (294)
45 1o97_C Electron transferring f 87.5 0.84 2.9E-05 33.8 4.9 82 11-128 32-123 (264)
46 3kcq_A Phosphoribosylglycinami 87.2 3.6 0.00012 29.4 7.9 88 3-128 6-93 (215)
47 3fy4_A 6-4 photolyase; DNA rep 87.2 1.3 4.4E-05 36.3 6.2 92 18-127 19-113 (537)
48 2wq7_A RE11660P; lyase-DNA com 87.2 4.8 0.00016 32.9 9.6 89 18-126 43-133 (543)
49 2hma_A Probable tRNA (5-methyl 87.0 7.1 0.00024 30.3 10.1 98 3-127 7-133 (376)
50 1efv_B Electron transfer flavo 86.9 5.9 0.0002 29.1 9.1 79 14-129 38-128 (255)
51 1xmp_A PURE, phosphoribosylami 86.6 5.3 0.00018 27.4 8.0 53 79-133 26-82 (170)
52 4grd_A N5-CAIR mutase, phospho 86.6 3.6 0.00012 28.4 7.2 53 79-133 27-83 (173)
53 3p9x_A Phosphoribosylglycinami 86.4 7.1 0.00024 27.8 9.1 86 5-128 2-92 (211)
54 1np7_A DNA photolyase; protein 86.3 9.4 0.00032 30.7 10.8 103 7-128 7-111 (489)
55 3kuu_A Phosphoribosylaminoimid 85.5 5.4 0.00019 27.5 7.7 53 79-133 27-83 (174)
56 3oow_A Phosphoribosylaminoimid 84.9 6.9 0.00024 26.8 7.9 53 79-133 20-76 (166)
57 3trh_A Phosphoribosylaminoimid 84.6 4.8 0.00017 27.6 7.1 53 79-133 21-77 (169)
58 1y80_A Predicted cobalamin bin 83.4 2.5 8.4E-05 29.8 5.5 69 84-161 109-181 (210)
59 1sur_A PAPS reductase; assimil 83.1 9.9 0.00034 26.7 10.2 35 6-46 45-79 (215)
60 2j4d_A Cryptochrome 3, cryptoc 82.8 8.3 0.00028 31.4 9.1 105 6-128 40-146 (525)
61 1owl_A Photolyase, deoxyribodi 82.6 8.2 0.00028 31.0 8.9 85 19-127 18-102 (484)
62 1u11_A PURE (N5-carboxyaminoim 82.2 6.7 0.00023 27.3 7.0 53 79-133 36-92 (182)
63 3ors_A N5-carboxyaminoimidazol 82.2 7.1 0.00024 26.6 7.1 53 79-133 18-74 (163)
64 3rg8_A Phosphoribosylaminoimid 81.9 7.2 0.00025 26.5 7.0 53 79-133 17-74 (159)
65 2e0i_A 432AA long hypothetical 80.9 8.6 0.0003 30.5 8.3 83 20-127 17-99 (440)
66 1o4v_A Phosphoribosylaminoimid 80.8 9 0.00031 26.6 7.3 53 79-133 28-84 (183)
67 2oq2_A Phosphoadenosine phosph 80.3 15 0.0005 26.8 9.5 39 5-46 41-79 (261)
68 3lp6_A Phosphoribosylaminoimid 79.7 8 0.00028 26.7 6.7 53 79-133 22-78 (174)
69 2wsi_A FAD synthetase; transfe 78.8 17 0.00058 27.3 9.0 93 6-129 54-169 (306)
70 2ywb_A GMP synthase [glutamine 78.7 23 0.00077 28.6 10.3 35 6-46 210-244 (503)
71 2i2x_B MTAC, methyltransferase 77.8 6.7 0.00023 28.7 6.4 74 83-164 143-217 (258)
72 3ezx_A MMCP 1, monomethylamine 77.2 3.5 0.00012 29.4 4.6 72 83-163 112-189 (215)
73 1iv0_A Hypothetical protein; r 75.5 2.5 8.5E-05 26.3 3.0 50 104-158 38-92 (98)
74 2pg3_A Queuosine biosynthesis 73.6 21 0.00073 25.2 11.7 36 5-46 2-37 (232)
75 2c5s_A THII, probable thiamine 72.5 33 0.0011 26.9 11.0 36 4-45 186-221 (413)
76 1kor_A Argininosuccinate synth 71.7 34 0.0012 26.8 11.5 36 6-46 1-36 (400)
77 3bl5_A Queuosine biosynthesis 71.4 23 0.00077 24.6 11.5 36 5-46 3-38 (219)
78 1meo_A Phosophoribosylglycinam 71.2 24 0.00083 24.9 8.4 85 6-128 1-90 (209)
79 1dnp_A DNA photolyase; DNA rep 71.0 16 0.00056 29.2 7.5 87 20-127 17-105 (471)
80 3da8_A Probable 5'-phosphoribo 70.9 25 0.00087 25.0 9.4 85 4-128 11-100 (215)
81 1u3d_A Cryptochrome 1 apoprote 70.9 40 0.0014 27.2 11.2 84 18-126 26-110 (509)
82 3zqu_A Probable aromatic acid 70.0 6.4 0.00022 28.0 4.4 37 4-43 3-39 (209)
83 3o1l_A Formyltetrahydrofolate 69.5 33 0.0011 25.8 10.0 85 4-128 104-192 (302)
84 2dpl_A GMP synthetase, GMP syn 69.3 28 0.00097 26.0 8.2 37 5-46 20-56 (308)
85 2ejb_A Probable aromatic acid 68.7 7 0.00024 27.3 4.3 35 5-42 1-35 (189)
86 2l69_A Rossmann 2X3 fold prote 68.7 3.2 0.00011 25.6 2.2 50 79-130 14-63 (134)
87 3fni_A Putative diflavin flavo 67.1 17 0.00059 24.2 6.0 47 79-129 21-68 (159)
88 3gxq_A Putative regulator of t 65.4 6.3 0.00021 20.5 2.6 27 94-120 10-37 (54)
89 1p3y_1 MRSD protein; flavoprot 65.3 8.5 0.00029 27.0 4.2 35 5-42 8-42 (194)
90 2j07_A Deoxyribodipyrimidine p 65.1 22 0.00077 27.9 7.1 81 19-127 17-97 (420)
91 1nu0_A Hypothetical protein YQ 64.8 4.1 0.00014 27.0 2.4 51 104-158 40-95 (138)
92 3tqi_A GMP synthase [glutamine 64.6 20 0.00069 29.1 6.9 36 6-46 231-266 (527)
93 2l69_A Rossmann 2X3 fold prote 64.2 22 0.00076 21.8 6.8 35 79-115 89-123 (134)
94 3exr_A RMPD (hexulose-6-phosph 64.1 36 0.0012 24.1 7.9 36 1-43 1-36 (221)
95 3hly_A Flavodoxin-like domain; 63.3 19 0.00064 24.0 5.6 45 81-129 19-63 (161)
96 3auf_A Glycinamide ribonucleot 63.1 39 0.0013 24.2 9.7 43 84-128 65-112 (229)
97 3lou_A Formyltetrahydrofolate 62.4 46 0.0016 24.8 10.3 85 4-128 94-182 (292)
98 3bul_A Methionine synthase; tr 62.3 15 0.00051 30.4 5.7 73 82-163 117-191 (579)
99 2ywr_A Phosphoribosylglycinami 62.3 39 0.0013 23.9 9.8 43 84-128 44-91 (216)
100 1qzu_A Hypothetical protein MD 62.2 10 0.00036 26.8 4.3 40 2-43 16-55 (206)
101 3n0v_A Formyltetrahydrofolate 62.1 46 0.0016 24.7 10.1 85 4-128 89-177 (286)
102 3k32_A Uncharacterized protein 61.8 37 0.0013 23.5 9.4 37 4-46 5-41 (203)
103 1v6t_A Hypothetical UPF0271 pr 61.4 45 0.0015 24.4 8.9 107 8-128 31-147 (255)
104 3vmk_A 3-isopropylmalate dehyd 60.1 43 0.0015 26.0 7.7 78 16-125 179-256 (375)
105 3ayv_A Putative uncharacterize 59.8 37 0.0013 24.0 7.1 81 18-117 74-154 (254)
106 2hy5_B Intracellular sulfur ox 59.7 16 0.00056 23.9 4.6 42 1-45 1-46 (136)
107 1cnz_A IPMDH, IMDH, protein (3 59.7 45 0.0015 25.8 7.7 79 15-125 169-247 (363)
108 1g63_A Epidermin modifying enz 59.6 10 0.00036 26.2 3.8 36 5-43 2-37 (181)
109 1xw8_A UPF0271 protein YBGL; N 58.6 51 0.0017 24.1 7.5 105 10-128 28-142 (252)
110 3av3_A Phosphoribosylglycinami 58.1 46 0.0016 23.4 10.3 87 4-128 2-93 (212)
111 1a05_A IPMDH, IMDH, 3-isopropy 57.9 52 0.0018 25.4 7.8 79 15-125 164-242 (358)
112 2y3z_A 3-isopropylmalate dehyd 57.5 52 0.0018 25.4 7.7 78 16-125 163-240 (359)
113 3lqk_A Dipicolinate synthase s 57.5 10 0.00035 26.7 3.5 40 1-43 3-43 (201)
114 3nrb_A Formyltetrahydrofolate 57.0 29 0.001 25.8 6.1 86 4-128 87-176 (287)
115 1vl2_A Argininosuccinate synth 56.7 72 0.0024 25.2 10.8 36 5-46 14-49 (421)
116 1vbk_A Hypothetical protein PH 56.4 53 0.0018 24.6 7.5 34 4-44 178-211 (307)
117 3rjz_A N-type ATP pyrophosphat 55.6 55 0.0019 23.6 10.1 95 6-129 5-102 (237)
118 4ds3_A Phosphoribosylglycinami 55.0 53 0.0018 23.2 9.7 86 5-128 7-97 (209)
119 3r8w_A 3-isopropylmalate dehyd 54.8 61 0.0021 25.5 7.8 78 16-125 207-284 (405)
120 1xrs_B D-lysine 5,6-aminomutas 54.4 14 0.00048 27.3 3.9 53 103-160 166-224 (262)
121 1vlc_A 3-isopropylmalate dehyd 54.3 59 0.002 25.2 7.6 79 15-125 173-251 (366)
122 3qjg_A Epidermin biosynthesis 53.6 21 0.00073 24.5 4.6 112 6-158 6-117 (175)
123 2xij_A Methylmalonyl-COA mutas 52.7 31 0.0011 29.5 6.2 50 104-158 642-693 (762)
124 3udu_A 3-isopropylmalate dehyd 52.7 54 0.0019 25.3 7.1 78 16-125 167-244 (361)
125 2o8v_A Phosphoadenosine phosph 52.4 62 0.0021 23.2 9.7 34 6-45 46-79 (252)
126 3d0c_A Dihydrodipicolinate syn 52.3 63 0.0022 24.2 7.4 70 78-156 69-142 (314)
127 2dfa_A Hypothetical UPF0271 pr 52.1 44 0.0015 24.4 6.2 106 8-127 31-146 (250)
128 1req_A Methylmalonyl-COA mutas 52.0 27 0.00093 29.7 5.7 50 104-158 634-685 (727)
129 2x5e_A UPF0271 protein PA4511; 52.0 67 0.0023 23.5 7.1 104 9-126 38-151 (252)
130 3obi_A Formyltetrahydrofolate 51.7 48 0.0016 24.6 6.6 86 4-128 88-177 (288)
131 2ojp_A DHDPS, dihydrodipicolin 51.4 66 0.0023 23.8 7.3 76 77-160 57-136 (292)
132 2h31_A Multifunctional protein 51.3 53 0.0018 26.0 7.0 53 79-133 280-337 (425)
133 3m9w_A D-xylose-binding peripl 50.8 68 0.0023 23.2 8.3 67 79-156 20-88 (313)
134 1of8_A Phospho-2-dehydro-3-deo 50.7 25 0.00085 27.3 4.9 127 6-156 67-200 (370)
135 2ehh_A DHDPS, dihydrodipicolin 50.5 71 0.0024 23.6 7.4 75 77-159 56-134 (294)
136 1jkx_A GART;, phosphoribosylgl 50.3 64 0.0022 22.7 9.7 85 6-128 1-90 (212)
137 1o5k_A DHDPS, dihydrodipicolin 50.1 77 0.0026 23.6 7.5 75 77-159 68-146 (306)
138 3u1h_A 3-isopropylmalate dehyd 49.9 76 0.0026 24.8 7.6 78 16-125 186-263 (390)
139 3m47_A Orotidine 5'-phosphate 49.6 56 0.0019 23.2 6.5 36 1-44 9-44 (228)
140 3mcu_A Dipicolinate synthase, 49.1 15 0.00052 26.0 3.3 40 1-43 1-41 (207)
141 1sbz_A Probable aromatic acid 48.3 29 0.001 24.3 4.6 35 6-42 1-35 (197)
142 1xky_A Dihydrodipicolinate syn 48.1 82 0.0028 23.4 7.5 75 77-159 68-146 (301)
143 1vhx_A Putative holliday junct 47.9 6.1 0.00021 26.5 1.0 22 104-125 42-63 (150)
144 1x0l_A Homoisocitrate dehydrog 47.6 40 0.0014 25.7 5.6 81 15-125 143-223 (333)
145 3cpr_A Dihydrodipicolinate syn 47.4 82 0.0028 23.4 7.3 74 78-159 73-150 (304)
146 3m5v_A DHDPS, dihydrodipicolin 47.1 85 0.0029 23.3 7.4 77 77-160 63-143 (301)
147 1w0d_A 3-isopropylmalate dehyd 46.8 61 0.0021 24.8 6.5 80 15-125 153-232 (337)
148 2yxg_A DHDPS, dihydrodipicolin 46.6 74 0.0025 23.4 6.9 74 78-159 57-134 (289)
149 2r8w_A AGR_C_1641P; APC7498, d 46.4 82 0.0028 23.8 7.3 75 78-160 91-169 (332)
150 3l49_A ABC sugar (ribose) tran 45.9 78 0.0027 22.5 7.5 48 78-127 22-71 (291)
151 2v9d_A YAGE; dihydrodipicolini 45.8 80 0.0027 24.0 7.1 75 78-160 88-166 (343)
152 2is8_A Molybdopterin biosynthe 45.2 58 0.002 21.8 5.7 40 83-124 26-69 (164)
153 1y5e_A Molybdenum cofactor bio 44.4 55 0.0019 22.0 5.5 37 86-124 39-79 (169)
154 3a5f_A Dihydrodipicolinate syn 44.3 70 0.0024 23.6 6.5 75 77-159 57-135 (291)
155 2vc6_A MOSA, dihydrodipicolina 44.2 68 0.0023 23.7 6.4 73 78-158 57-133 (292)
156 1f6k_A N-acetylneuraminate lya 43.1 71 0.0024 23.6 6.4 73 78-158 61-137 (293)
157 3flk_A Tartrate dehydrogenase/ 42.8 39 0.0013 26.2 4.9 80 16-125 166-245 (364)
158 1jq5_A Glycerol dehydrogenase; 42.7 86 0.003 23.8 7.0 45 79-125 46-95 (370)
159 3rot_A ABC sugar transporter, 42.5 91 0.0031 22.3 7.5 50 78-129 20-73 (297)
160 1xrs_A D-lysine 5,6-aminomutas 41.6 1.3E+02 0.0045 24.0 7.7 41 93-133 150-193 (516)
161 3blx_A Isocitrate dehydrogenas 41.6 45 0.0015 25.7 5.1 81 15-125 156-237 (349)
162 2f6u_A GGGPS, (S)-3-O-geranylg 41.4 50 0.0017 23.8 5.1 51 100-156 12-66 (234)
163 2qjg_A Putative aldolase MJ040 41.4 94 0.0032 22.3 6.8 65 79-156 133-207 (273)
164 2amj_A Modulator of drug activ 41.4 64 0.0022 22.3 5.6 48 77-128 33-81 (204)
165 3pm6_A Putative fructose-bisph 41.1 25 0.00085 26.6 3.5 72 76-156 15-87 (306)
166 3l21_A DHDPS, dihydrodipicolin 40.9 1.1E+02 0.0037 22.8 7.9 75 78-160 72-150 (304)
167 3iwt_A 178AA long hypothetical 40.9 80 0.0027 21.2 6.2 40 83-124 45-88 (178)
168 3qi7_A Putative transcriptiona 40.9 1E+02 0.0034 23.9 7.0 91 7-126 14-120 (371)
169 3inp_A D-ribulose-phosphate 3- 40.8 42 0.0014 24.4 4.6 42 80-125 182-224 (246)
170 1e2b_A Enzyme IIB-cellobiose; 40.5 63 0.0022 19.9 6.5 64 80-160 20-84 (106)
171 3kp1_A D-ornithine aminomutase 40.5 16 0.00053 30.9 2.5 58 103-165 643-706 (763)
172 3tqk_A Phospho-2-dehydro-3-deo 39.7 78 0.0027 24.3 6.0 126 6-156 49-182 (346)
173 3l6u_A ABC-type sugar transpor 39.6 99 0.0034 21.9 9.0 51 77-129 24-76 (293)
174 3rfq_A Pterin-4-alpha-carbinol 39.2 92 0.0032 21.4 6.2 39 84-124 55-96 (185)
175 1gvf_A Tagatose-bisphosphate a 39.1 20 0.00068 26.8 2.7 59 96-156 20-79 (286)
176 3eb2_A Putative dihydrodipicol 38.9 1.1E+02 0.0037 22.7 6.8 72 78-157 61-136 (300)
177 2wkj_A N-acetylneuraminate lya 38.8 87 0.003 23.3 6.3 74 78-159 68-146 (303)
178 2rfg_A Dihydrodipicolinate syn 38.2 79 0.0027 23.4 6.0 74 78-159 57-134 (297)
179 2yvq_A Carbamoyl-phosphate syn 37.7 38 0.0013 22.2 3.7 64 86-156 62-130 (143)
180 3vzx_A Heptaprenylglyceryl pho 37.3 45 0.0015 23.9 4.3 43 108-156 22-64 (228)
181 3w01_A Heptaprenylglyceryl pho 37.2 58 0.002 23.5 4.9 44 107-156 26-69 (235)
182 1mkz_A Molybdenum cofactor bio 37.1 89 0.0031 21.0 5.7 38 85-124 35-76 (172)
183 3n4p_A Terminase subunit UL89 37.0 1.2E+02 0.0043 22.3 7.2 99 4-123 130-237 (279)
184 3qze_A DHDPS, dihydrodipicolin 36.7 1.3E+02 0.0043 22.5 6.9 75 78-160 80-158 (314)
185 3flu_A DHDPS, dihydrodipicolin 36.5 1.3E+02 0.0044 22.2 7.0 75 78-160 64-142 (297)
186 1i60_A IOLI protein; beta barr 36.2 1.1E+02 0.0038 21.5 8.0 79 18-117 82-165 (278)
187 2qv7_A Diacylglycerol kinase D 36.0 1.3E+02 0.0046 22.4 7.8 44 79-124 43-87 (337)
188 2q62_A ARSH; alpha/beta, flavo 36.0 62 0.0021 23.3 4.9 47 79-129 53-110 (247)
189 3q94_A Fructose-bisphosphate a 35.9 35 0.0012 25.5 3.6 61 94-156 21-85 (288)
190 3na8_A Putative dihydrodipicol 35.8 1E+02 0.0036 23.0 6.3 75 78-160 81-159 (315)
191 3q0i_A Methionyl-tRNA formyltr 35.8 1.4E+02 0.0047 22.4 7.2 42 83-128 55-96 (318)
192 3kbq_A Protein TA0487; structu 35.1 76 0.0026 21.6 5.0 39 84-124 29-69 (172)
193 3tak_A DHDPS, dihydrodipicolin 35.1 1.3E+02 0.0043 22.2 6.6 76 77-160 57-136 (291)
194 3l4e_A Uncharacterized peptida 35.0 84 0.0029 21.9 5.4 80 80-168 46-129 (206)
195 3u0h_A Xylose isomerase domain 35.0 1.2E+02 0.004 21.4 7.3 77 20-118 84-171 (281)
196 2g2c_A Putative molybdenum cof 34.7 81 0.0028 21.1 5.1 36 87-124 38-76 (167)
197 1qv9_A F420-dependent methylen 34.4 80 0.0027 23.1 5.0 40 110-156 57-96 (283)
198 3uug_A Multiple sugar-binding 34.2 1.3E+02 0.0045 21.7 7.7 48 78-127 20-69 (330)
199 2b99_A Riboflavin synthase; lu 33.9 1.1E+02 0.0037 20.6 6.3 76 79-157 17-98 (156)
200 3o1i_D Periplasmic protein TOR 33.5 1.3E+02 0.0044 21.4 8.4 50 78-129 22-75 (304)
201 3nbm_A PTS system, lactose-spe 33.5 83 0.0028 19.5 4.6 61 82-159 25-86 (108)
202 2i0f_A 6,7-dimethyl-8-ribityll 33.4 1.1E+02 0.0037 20.6 8.1 89 74-167 25-129 (157)
203 3dx5_A Uncharacterized protein 33.2 1.3E+02 0.0045 21.4 7.3 79 18-117 82-163 (286)
204 1k77_A EC1530, hypothetical pr 33.1 1.2E+02 0.0042 21.1 7.1 81 17-118 82-170 (260)
205 3en0_A Cyanophycinase; serine 33.0 1.1E+02 0.0037 22.7 5.9 109 3-148 23-138 (291)
206 1x92_A APC5045, phosphoheptose 32.7 29 0.001 23.7 2.6 39 4-45 112-150 (199)
207 1tjy_A Sugar transport protein 32.2 1.4E+02 0.0049 21.6 7.2 49 79-129 21-72 (316)
208 3daq_A DHDPS, dihydrodipicolin 31.9 1.2E+02 0.004 22.4 6.0 75 78-160 59-137 (292)
209 3e96_A Dihydrodipicolinate syn 31.8 1.1E+02 0.0038 22.8 5.9 70 78-156 69-142 (316)
210 1vp8_A Hypothetical protein AF 31.8 1E+02 0.0036 21.6 5.2 74 77-157 29-104 (201)
211 8abp_A L-arabinose-binding pro 31.4 1.4E+02 0.0048 21.2 7.7 48 78-128 19-68 (306)
212 2q9u_A A-type flavoprotein; fl 31.3 1.5E+02 0.0053 22.5 6.9 49 77-129 271-319 (414)
213 3g1w_A Sugar ABC transporter; 31.3 1.4E+02 0.0048 21.2 7.6 49 78-128 21-72 (305)
214 1c2y_A Protein (lumazine synth 31.0 1.2E+02 0.0041 20.3 6.1 92 74-168 26-128 (156)
215 1nmo_A Hypothetical protein YB 31.0 76 0.0026 22.9 4.7 31 3-42 33-63 (247)
216 1rvg_A Fructose-1,6-bisphospha 30.9 58 0.002 24.5 4.1 58 96-156 19-77 (305)
217 3inp_A D-ribulose-phosphate 3- 30.8 55 0.0019 23.7 3.9 44 80-127 123-166 (246)
218 1jlj_A Gephyrin; globular alph 30.5 1.3E+02 0.0045 20.6 5.7 33 90-124 49-85 (189)
219 3si9_A DHDPS, dihydrodipicolin 30.5 1.5E+02 0.0051 22.2 6.4 75 78-160 79-157 (315)
220 1kjq_A GART 2, phosphoribosylg 30.3 1.7E+02 0.006 21.9 8.2 38 1-45 7-44 (391)
221 3ctl_A D-allulose-6-phosphate 29.9 63 0.0021 23.1 4.1 44 80-127 95-138 (231)
222 3elf_A Fructose-bisphosphate a 29.9 88 0.003 24.0 5.0 75 76-156 9-92 (349)
223 3vk5_A MOEO5; TIM barrel, tran 29.9 49 0.0017 24.7 3.5 44 109-156 58-101 (286)
224 4f2d_A L-arabinose isomerase; 29.9 1.4E+02 0.0047 24.1 6.4 42 106-156 60-102 (500)
225 3pzy_A MOG; ssgcid, seattle st 29.8 73 0.0025 21.3 4.2 37 85-124 34-73 (164)
226 1uuy_A CNX1, molybdopterin bio 29.7 1.2E+02 0.0043 20.1 5.9 31 94-124 44-78 (167)
227 3tva_A Xylose isomerase domain 29.7 1.5E+02 0.0052 21.1 7.1 76 18-117 100-175 (290)
228 3ksm_A ABC-type sugar transpor 29.5 1.4E+02 0.0049 20.7 6.8 48 78-127 17-69 (276)
229 2iv0_A Isocitrate dehydrogenas 29.1 1.9E+02 0.0066 22.7 6.9 30 16-46 197-226 (412)
230 3ngf_A AP endonuclease, family 29.0 1.5E+02 0.0052 20.9 7.2 79 18-118 91-177 (269)
231 2e0c_A 409AA long hypothetical 28.8 91 0.0031 24.5 5.0 30 16-46 197-226 (409)
232 3cqj_A L-ribulose-5-phosphate 27.4 1.7E+02 0.0058 20.9 8.0 79 18-117 106-187 (295)
233 3s40_A Diacylglycerol kinase; 27.1 1.9E+02 0.0064 21.2 6.5 42 80-124 28-70 (304)
234 2pbq_A Molybdenum cofactor bio 26.9 1.5E+02 0.005 20.0 5.4 33 89-124 39-75 (178)
235 2yva_A DNAA initiator-associat 26.8 43 0.0015 22.7 2.6 39 4-45 108-146 (196)
236 3rpe_A MDAB, modulator of drug 26.6 1.2E+02 0.0042 21.3 5.1 47 78-128 47-94 (218)
237 3u7q_B Nitrogenase molybdenum- 26.3 2.6E+02 0.0088 22.6 7.6 30 99-128 420-449 (523)
238 1gpm_A GMP synthetase, XMP ami 26.1 2.6E+02 0.0088 22.5 7.9 37 5-46 227-263 (525)
239 1viz_A PCRB protein homolog; s 26.0 1E+02 0.0034 22.2 4.6 45 106-156 22-66 (240)
240 1jx7_A Hypothetical protein YC 25.9 85 0.0029 19.0 3.8 39 5-45 1-44 (117)
241 3ctl_A D-allulose-6-phosphate 25.5 1.4E+02 0.0046 21.3 5.2 44 80-126 154-198 (231)
242 2xw6_A MGS, methylglyoxal synt 25.2 67 0.0023 21.0 3.2 60 90-156 48-110 (134)
243 2l2q_A PTS system, cellobiose- 25.1 1.2E+02 0.0042 18.5 6.4 66 81-162 22-87 (109)
244 2obx_A DMRL synthase 1, 6,7-di 25.0 1.6E+02 0.0054 19.7 6.6 81 74-157 24-113 (157)
245 3egc_A Putative ribose operon 25.0 1.8E+02 0.0063 20.4 8.9 49 77-127 24-74 (291)
246 3sho_A Transcriptional regulat 24.9 1.5E+02 0.0053 19.5 5.6 39 4-45 86-124 (187)
247 3dbi_A Sugar-binding transcrip 24.9 2E+02 0.0069 20.9 8.3 47 78-126 80-128 (338)
248 2isw_A Putative fructose-1,6-b 24.9 66 0.0023 24.5 3.5 61 94-156 18-80 (323)
249 3brs_A Periplasmic binding pro 24.7 1.8E+02 0.0063 20.3 7.1 48 78-127 24-75 (289)
250 3h75_A Periplasmic sugar-bindi 24.6 2.1E+02 0.0071 20.9 9.0 67 78-156 21-91 (350)
251 3lvu_A ABC transporter, peripl 24.6 1.8E+02 0.0063 20.3 6.2 45 78-127 143-187 (258)
252 1mio_B Nitrogenase molybdenum 24.3 2.6E+02 0.0089 22.0 8.6 30 98-127 366-395 (458)
253 2o2z_A Hypothetical protein; s 24.0 69 0.0024 24.3 3.5 48 104-156 167-215 (323)
254 2pjk_A 178AA long hypothetical 23.8 1.7E+02 0.0059 19.7 5.7 39 84-124 46-88 (178)
255 3n9r_A Fructose-bisphosphate a 23.8 59 0.002 24.5 3.0 61 94-156 17-79 (307)
256 3b4u_A Dihydrodipicolinate syn 23.6 2.2E+02 0.0075 20.9 6.3 61 94-159 73-141 (294)
257 2a5l_A Trp repressor binding p 23.5 1.5E+02 0.0052 19.7 5.0 12 117-128 71-82 (200)
258 3kht_A Response regulator; PSI 23.3 1.4E+02 0.0046 18.4 5.4 22 106-127 40-61 (144)
259 2gx8_A NIF3-related protein; s 23.0 96 0.0033 24.3 4.2 32 2-42 61-92 (397)
260 1dd9_A DNA primase, DNAG; topr 23.0 1.9E+02 0.0067 21.9 5.9 36 6-43 207-245 (338)
261 2vk2_A YTFQ, ABC transporter p 22.9 2.1E+02 0.0072 20.4 7.9 47 79-127 20-68 (306)
262 1m3s_A Hypothetical protein YC 22.6 58 0.002 21.8 2.6 39 4-45 78-116 (186)
263 1mvl_A PPC decarboxylase athal 22.6 74 0.0025 22.4 3.2 34 5-42 19-52 (209)
264 3tha_A Tryptophan synthase alp 22.3 2.3E+02 0.0078 20.6 6.8 42 80-125 105-149 (252)
265 1kz1_A 6,7-dimethyl-8-ribityll 22.3 1.8E+02 0.0063 19.5 6.4 91 74-167 30-133 (159)
266 2ux9_A Dodecin; flavoprotein; 22.2 59 0.002 18.6 2.2 44 1-46 1-44 (69)
267 2l8b_A Protein TRAI, DNA helic 21.9 1.1E+02 0.0036 21.4 3.8 39 106-153 138-176 (189)
268 1hqk_A 6,7-dimethyl-8-ribityll 21.8 1.9E+02 0.0063 19.3 6.6 92 74-168 25-128 (154)
269 2ftp_A Hydroxymethylglutaryl-C 21.7 2.4E+02 0.0083 20.7 9.0 72 78-156 124-208 (302)
270 2fzv_A Putative arsenical resi 21.6 1.4E+02 0.0048 22.0 4.7 46 79-128 77-134 (279)
271 1tk9_A Phosphoheptose isomeras 21.6 62 0.0021 21.6 2.6 41 4-47 109-149 (188)
272 1ycg_A Nitric oxide reductase; 21.5 2.3E+02 0.0077 21.3 6.1 46 79-128 268-313 (398)
273 3jy6_A Transcriptional regulat 21.4 2.1E+02 0.0073 19.9 9.1 50 77-128 23-74 (276)
274 3qk7_A Transcriptional regulat 21.3 2.2E+02 0.0077 20.1 8.4 49 77-127 26-75 (294)
275 2d1c_A Isocitrate dehydrogenas 21.3 1.2E+02 0.0042 24.5 4.5 80 16-125 165-244 (496)
276 1b93_A Protein (methylglyoxal 21.3 1.9E+02 0.0065 19.2 6.7 60 90-156 56-118 (152)
277 3l23_A Sugar phosphate isomera 21.3 2.4E+02 0.0082 20.4 6.2 60 16-99 104-165 (303)
278 2fn9_A Ribose ABC transporter, 21.1 2.2E+02 0.0076 20.0 8.8 48 78-127 19-68 (290)
279 2p0y_A Hypothetical protein LP 21.0 61 0.0021 24.8 2.7 47 104-156 177-225 (341)
280 3vnd_A TSA, tryptophan synthas 20.7 2.5E+02 0.0086 20.4 6.3 14 144-157 199-212 (267)
281 2fyw_A Conserved hypothetical 20.7 70 0.0024 23.3 2.9 30 95-124 37-66 (267)
282 3qc0_A Sugar isomerase; TIM ba 20.6 2.2E+02 0.0076 19.8 7.0 80 18-117 81-169 (275)
283 3tn4_A Phosphotriesterase; lac 20.4 2E+02 0.0068 22.0 5.5 48 77-126 192-241 (360)
284 3rxy_A NIF3 protein; structura 20.4 78 0.0027 23.5 3.0 22 103-124 45-66 (278)
285 1rvv_A Riboflavin synthase; tr 20.2 2E+02 0.0069 19.2 7.0 92 74-168 25-128 (154)
286 3qxb_A Putative xylose isomera 20.1 2.2E+02 0.0076 20.6 5.6 83 18-116 112-200 (316)
287 2xbl_A Phosphoheptose isomeras 20.1 82 0.0028 21.2 3.0 40 4-46 115-154 (198)
288 3u02_A Putative transcription- 20.0 26 0.00088 25.7 0.3 13 145-157 204-216 (252)
No 1
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.95 E-value=9.7e-27 Score=163.22 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=117.6
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC-----CCCCCcCCCCccc-ch--HHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL-----PVHSSFDAAGYIF-SN--DVIKAVEKYA 72 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~-----~~~~~~~~~~~~~-~~--~~~~~~~~~~ 72 (173)
|...+++||||+|+|+.+.++++||+.+|+..+ ++|+++||.++. +.. ......... +. +......+..
T Consensus 1 M~~~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T 1mjh_A 1 MSVMYKKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIF-SLLLGVAGLNKSVEEFENELKNKL 77 (162)
T ss_dssp --CCCCEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC------------------CHHHHHHHHHHH
T ss_pred CccccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccc-cccccccccccchhhhHHHHHHHH
Confidence 666789999999999999999999999999998 999999998754 110 000000000 11 0122344455
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCC
Q 030672 73 SESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.+..++.++.+.+.+...| +++++.+..|++.++|+++++++++||||||+++++++.+ +++||++.+++++++|
T Consensus 78 ~~~~~~~l~~~~~~~~~~g--~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~---~~~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 78 TEEAKNKMENIKKELEDVG--FKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKE---ILLGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTT---CSSCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHcC--CceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccc---eEecchHHHHHHhCCC
Confidence 5677788888888888888 8999999999999999999999999999999999999988 6799999999999999
Q ss_pred Ceehhh
Q 030672 153 SRLFGD 158 (173)
Q Consensus 153 pvL~~~ 158 (173)
|||+.+
T Consensus 153 pVlvv~ 158 (162)
T 1mjh_A 153 PVLVVK 158 (162)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 999853
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=4.5e-27 Score=162.05 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=120.7
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
..+++||||+|+|+.+.++++||+.+|+..+ ++|+++||.++....... .........+...+..++.++.
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~ 73 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHTPA-------LDPVLSELLDAEAAHAKDAMRQ 73 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCCGG-------GHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccc-------cccccHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988 999999998876443210 1113344455566778888899
Q ss_pred HHHHHHhcCCce-EEEEEEeeCChHHHHHH-HHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQNNI-HVKRVVGCGDAKDVICG-TVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~-~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+.+.| + ++++.+..|++.+.|++ ++++.++||||||+++++.+.+ +++||++.+++++++||||+.
T Consensus 74 ~~~~~~~~g--~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~---~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 74 RQQFVATTS--APNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHR---VAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHHTTSS--CCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTT---CSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHhcC--CcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcce---EEEcchHHHHhccCCCCEEEe
Confidence 998888888 8 89999999999999999 9999999999999999999988 679999999999999999974
No 3
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.94 E-value=3.2e-26 Score=156.44 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=114.6
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhc-CCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHH-HHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNL-FSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYAS-ESVNSVMNR 82 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la-~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 82 (173)
|++||||+|+|+.+..+++||..+| +..+ ++|+++||.++...... .........+... +..++.++.
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYGE--------AVLAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCcccc--------cccCcHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 8888 99999999987643211 0111123334445 677888888
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+.+.| +++++.+..|++.++|+++++ ++||||||+++++++.+ ++ ||++.+++++++||||+.
T Consensus 71 ~~~~~~~~g--~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~---~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 71 FSTFFTEKG--INPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNK---IF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHTTT--CCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSS---CC-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHCC--CCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHH---Hh-CcHHHHHHhcCCCCEEEe
Confidence 898888888 899999999999999999999 99999999999999988 67 999999999999999973
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=4.5e-26 Score=161.09 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=111.8
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCc-CCCC-cccchHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSF-DAAG-YIFSNDVIKAVEKYASESVNS 78 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (173)
|...+++||||+|+|+.+.++++||+.+|+..+ ++|+++||.++....... +... +..+......+.+...+..++
T Consensus 1 M~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T 2dum_A 1 MIFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASR 78 (170)
T ss_dssp ---CCSEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHH
T ss_pred CccccceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 667799999999999999999999999999998 999999998754321100 0000 000000001112334455666
Q ss_pred HHHHHHHHHHhcCCceEEEE--EEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 79 VMNRAEAVYRNFQNNIHVKR--VVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~--~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.++.+.+.+...| +++++ .+..|++.+.|+++++++++||||||+++++++.+ .++||++.+++++++||||+
T Consensus 79 ~l~~~~~~~~~~g--~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~---~~~Gsv~~~vl~~~~~PVlv 153 (170)
T 2dum_A 79 KLQEKAEEVKRAF--RAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSH---EFLGSTVMRVLRKTKKPVLI 153 (170)
T ss_dssp HHHHHHHHHHHHT--TCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--T---TCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHcC--CceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCcccc---ceechHHHHHHHhCCCCEEE
Confidence 7777777777777 77777 88899999999999999999999999999999988 67999999999999999998
Q ss_pred hh
Q 030672 157 GD 158 (173)
Q Consensus 157 ~~ 158 (173)
.+
T Consensus 154 v~ 155 (170)
T 2dum_A 154 IK 155 (170)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=3.2e-27 Score=162.91 Aligned_cols=142 Identities=17% Similarity=0.177 Sum_probs=114.4
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
|++||||+|+|+.+.+++++|+.+|+..+ ++|+++||.++......... ..+........+...+..++.++.+.
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLS---MARPEQLDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBS---SCCCGGGCCCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccc---ccChhhhhhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999988 99999999986531110000 00011111112334456677888888
Q ss_pred HHHHhcCCceEE---EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 85 AVYRNFQNNIHV---KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 85 ~~~~~~~~~v~~---~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+.+.+.| +++ ++.+..|++.++|+++++++++||||||+++++.+.+ .++||++.+++++++||||+
T Consensus 77 ~~~~~~g--~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~---~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 77 TRATELG--VPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKS---LLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHHTT--CCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSC---CCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHhcC--CCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccc---eeeccHHHHHHhhCCCCEEE
Confidence 8888888 777 8999999999999999999999999999999999988 67999999999999999996
No 6
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=1.4e-25 Score=156.38 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=114.8
Q ss_pred CCcEEEEEec--CChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVD--ESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 4 ~~~~ILv~vd--~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
.+++||||+| +|+.+.+++++|..+|+..+ ++|+++||.++....... ... ....+...+..++.++
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~l~ 82 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINIFD-----SLT----PSKIQAKRKHVEDVVA 82 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTCCC-----SSH----HHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccccc-----cCC----HHHHHHHHHHHHHHHH
Confidence 5899999999 99999999999999999988 999999999876532110 111 2334455567778888
Q ss_pred HHHHHHHhcCCce-EEEEEEee-CChHHHHHHH-HhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 82 RAEAVYRNFQNNI-HVKRVVGC-GDAKDVICGT-VEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 82 ~~~~~~~~~~~~v-~~~~~~~~-g~~~~~I~~~-a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+.+.+.+.| + .+++.+.. |++.++|+++ +++.++||||||+++++++.+ ++||++.+++++++||||+.
T Consensus 83 ~~~~~~~~~g--~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~----~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 83 EYVQLAEQRG--VNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSK----IAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHHHHHHHHT--CSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS----SCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHcC--CCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccce----eecchHHHHHHhCCCCEEEe
Confidence 8888888888 7 58999999 9999999999 999999999999999998863 69999999999999999974
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=7.2e-26 Score=159.48 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=110.0
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEE--EEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLL--YVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
..+++||||+|+|+.+.++++||+.+|+ .+ ++|+++ ||.++........ .. ...+.+...+..++.+
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l 83 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADI-----LK---DESYKVTGTAPIYEIL 83 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC----------------------------CCTHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccc-----cc---cHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999 88 999999 8876543211100 00 0112223344567778
Q ss_pred HHHHHHHHhcCCceE-EEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 81 NRAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+.+.+.+...| ++ +++.+..|++.++|++++++.++||||||+++++.+.+ +++||++.+++++++||||+.+.
T Consensus 84 ~~~~~~~~~~g--v~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~---~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 84 HDAKERAHNAG--AKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAG---RLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp HHHHHHHHTTT--CCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHH---HHTBBHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHcC--CCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccc---eeeccHHHHHHHhCCCCEEEEeC
Confidence 88888888777 87 99999999999999999999999999999999999998 67999999999999999998553
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.93 E-value=1.8e-25 Score=156.19 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=109.5
Q ss_pred CCcEEEEEecC-ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDE-SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 4 ~~~~ILv~vd~-s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+++||||+|+ |+.+.+++++|+.+|+..+ ++|+++||.+..... . +...+..++.++.
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~----------~--------~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRT----------K--------DEDIIEAKETLSW 82 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTS----------C--------HHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCcc----------c--------HHHHHHHHHHHHH
Confidence 47999999999 9999999999999999988 999999999854321 0 2233456677788
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+.+.++.+++++.+..|++.++|++++++.++||||||+++++++.+ +++||++.+++++++||||+.
T Consensus 83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~---~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGK---LIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSC---EECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCC---EEeccHHHHHHHhCCCCEEEe
Confidence 888888777233444456679999999999999999999999999999988 679999999999999999974
No 9
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.93 E-value=4.8e-25 Score=156.56 Aligned_cols=148 Identities=20% Similarity=0.285 Sum_probs=105.3
Q ss_pred CCCcEEEEEecCCh---------HHHHHHHHHHhhcCC---CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHH
Q 030672 3 TNERRVVVAVDESE---------ESMHALSWCLNNLFS---PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEK 70 (173)
Q Consensus 3 ~~~~~ILv~vd~s~---------~s~~al~~A~~la~~---~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (173)
..+++||||+|+|+ .+.++++||+.++.+ .+ ++|+++||.++....... ........+....+.+
T Consensus 3 ~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~--a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~ 79 (175)
T 2gm3_A 3 SEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSD--FKILLLHVQVVDEDGFDD-VDSIYASPEDFRDMRQ 79 (175)
T ss_dssp --CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTS--EEEEEEEEEC-----------CCCCSHHHHHHHTT
T ss_pred CCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCC--CEEEEEEEeecccccccc-cccccCCHHHHHHHHH
Confidence 36899999999999 999999999998744 56 999999998654211100 0000111222223333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC
Q 030672 71 YASESVNSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS 150 (173)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~ 150 (173)
...+..++.++.+.+.+...| +++++++..|++.+.|+++++++++||||||+++++++.+ +++||++.++++++
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~g--~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~---~~~Gsva~~vl~~a 154 (175)
T 2gm3_A 80 SNKAKGLHLLEFFVNKCHEIG--VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQK---VFVGTVSAFCVKHA 154 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT--CEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCC--CceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhh---hhcCchHHHHHhCC
Confidence 334456677888888887788 8899999999999999999999999999999999999988 67999999999999
Q ss_pred CCCeehhh
Q 030672 151 QPSRLFGD 158 (173)
Q Consensus 151 ~~pvL~~~ 158 (173)
+||||+.+
T Consensus 155 ~~pVlvv~ 162 (175)
T 2gm3_A 155 ECPVMTIK 162 (175)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEc
Confidence 99999854
No 10
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.92 E-value=2.6e-25 Score=151.91 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=103.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
+++||||+|+|+.+.+++++|..+|+..+ ++|+++||.++.+. .... ..+. ...+...+..++.++.+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~--~~~~---~~~~----~~~~~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPD--YLGE---PFFE----EALRRRLERAEGVLEEAR 70 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC-----------------------CHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCc--cccc---cchH----HHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999988 99999999975321 1100 0011 111222334445555544
Q ss_pred HHHHhcCCce-EEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 85 AVYRNFQNNI-HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 85 ~~~~~~~~~v-~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+. .| + ++++.+..|++.++|+++++++++||||||+++++++.+ .++||++.+++++++||||+.
T Consensus 71 ~~---~g--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~---~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 71 AL---TG--VPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGS---LFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HH---HC--CCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSC---SSSCHHHHHHHHHCSSCEEEE
T ss_pred HH---cC--CCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhh---hhhccHHHHHHhcCCCCEEEe
Confidence 43 55 6 677778899999999999999999999999999998888 679999999999999999973
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.92 E-value=5.1e-25 Score=151.24 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=106.4
Q ss_pred CcEEEEEecCChH--HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEE--SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 5 ~~~ILv~vd~s~~--s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.++||||+|+|+. +.+++++|..+|+..+ ++|+++||.++......... ....+ .+..++..++.++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~ 70 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYASLGM---AYTAE-----LPGMDELREGSETQ 70 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCcccccccc---cccch-----hhhHHHHHHHHHHH
Confidence 3799999999999 9999999999999988 99999999987643221110 00000 11223445556667
Q ss_pred HHHHHHhcCC-ceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNFQN-NIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~~~-~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+++.+. ++.+++.+..|++.++|+++++++++||||||+++ +++.+ +++||++.+++++++||||+.
T Consensus 71 l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~---~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 71 LKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITT---YLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCS---CSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCee---eeeccHHHHHHHhCCCCEEEe
Confidence 7777777652 35689999999999999999999999999999996 77777 679999999999999999973
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.91 E-value=2.2e-24 Score=149.22 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCC-CcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHS-SFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+++||||+|+|+.+.++++||+.+|+..+ ++|+++||.++..... ...........+.. +...+.+++.++.
T Consensus 5 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 5 VYHHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYGTAIPLDTETTY----DAMLDVEKQKLSQ 78 (150)
T ss_dssp CCSEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CTTCCCSSSCCCH----HHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCccccccccccccCcCHHHHH----HHHHHHHHHHHHH
Confidence 589999999999999999999999999988 9999999998754310 01000000011111 2222333444444
Q ss_pred HHHHHHhcCCceE-EEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 83 AEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 83 ~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+ +++.| ++ +++.+..|++.++|+++++++++||||||+++++.+. + ++||++.+++++++||||+.+
T Consensus 79 ~---~~~~~--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~---~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 79 I---GNTLG--IDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-L---LLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp H---HHHHT--CCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEEE
T ss_pred H---HHHcC--CCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-e---EecchHHHHHHhCCCCEEEEe
Confidence 3 33345 55 4778889999999999999999999999999998877 4 599999999999999999843
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.89 E-value=6.4e-23 Score=158.02 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=116.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.+++||||+|+|+.+..+++||+.+|+..+ ++|+++||.++.+.... .....+....+.+...+.+++.++.+
T Consensus 6 ~~k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (319)
T 3olq_A 6 KYQNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMT-----TLLSPDERNAMRKGVINQKTAWIKQQ 78 (319)
T ss_dssp CSCEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCT-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhc-----cccChhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 99999999875432111 11223334444445556667778888
Q ss_pred HHHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 84 EAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+.+...| +++++.+. .|++.+.|++++++.++||||||+++++.+.+ .++||++.+++++++||||+.+
T Consensus 79 ~~~~~~~~--v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~---~~~Gs~~~~vl~~~~~PVlvv~ 149 (319)
T 3olq_A 79 ARYYLEAG--IQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGS---LIFTPLDWQLLRKCPAPVWMVK 149 (319)
T ss_dssp HHHHHHTT--CCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCS---CBCCHHHHHHHHHCSSCEEEEE
T ss_pred HHHHhhcC--CeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhc---ccccccHHHHHhcCCCCEEEec
Confidence 87777777 99999999 89999999999999999999999999998888 6799999999999999999854
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.89 E-value=3.6e-23 Score=141.69 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=99.2
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCC-CCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPV-HSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
+++||||+|+|+.+.+++++|..+|+..+ ++|+++||.++.+. ... ..........+...+..++.++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~- 71 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYTG-------LIDVNMSSMQDRISTETQKALLD- 71 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCCC-------CEEHHHHHHTTCCCCHHHHHHHH-
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhcc-------ccccchHHHHHHHHHHHHHHHHH-
Confidence 68999999999999999999999999988 99999999853211 111 00111111111111223333333
Q ss_pred HHHHHhcCCceEE-EEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 84 EAVYRNFQNNIHV-KRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 84 ~~~~~~~~~~v~~-~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+++.| +++ ++.+..|++.+.|++++++.++||||||++ ++++.+ +||++.+++++++||||+.+
T Consensus 72 --~~~~~~--~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-----lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 72 --LAESVD--YPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-----LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp --HHHHSS--SCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-----HHHHHHHHHTTCCSEEEEEE
T ss_pred --HHHHcC--CCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-----hcchHHHHHhcCCCCEEEee
Confidence 334456 555 577888999999999999999999999999 888876 58999999999999999853
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.88 E-value=1.3e-22 Score=154.82 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=115.6
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
|.-.+++||||+|+|+.+..+++||+.+|+..+ ++|+++||.+........ ...... ...+...+.+++.+
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~l 88 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLSTVS---GGIDID----HYIDEMSEKAEEVL 88 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC--------CCCTT----HHHHHHHHHHHHHH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCccccccc---ccccHH----HHHHHHHHHHHHHH
Confidence 344689999999999999999999999999998 999999998865432110 011122 22334456677788
Q ss_pred HHHHHHHHhcCCceEEEE-EEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 81 NRAEAVYRNFQNNIHVKR-VVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~-~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+.+.+.+.| +++++ .+. .|++.++| ++++.++|+||||+++++.+.+ .++||++.+++++++||||+.+
T Consensus 89 ~~~~~~~~~~g--~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~---~~~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 89 PEVAQKIEAAG--IKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKK---ILLGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp HHHHHHHHHTT--CEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHH---HHHCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHcC--CCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccc---eeeccHHHHHHhcCCCCEEEec
Confidence 88888888888 99998 788 89999999 9999999999999999999988 6699999999999999999843
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.87 E-value=4.5e-22 Score=151.70 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=105.1
Q ss_pred CCcEEEEEecCChH-------HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEE-------SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESV 76 (173)
Q Consensus 4 ~~~~ILv~vd~s~~-------s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (173)
++++||||+|+|+. +.+++++|..+|+..+ ++++++||+++...... .++. ...+...+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~--------~~~~--~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSSA--------DPTF--QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC-----------------CH--HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCcccccc--------Cchh--HHHHHHHHHH
Confidence 57999999999998 8999999999999998 99999999986543211 0111 1122222233
Q ss_pred HHHHHHHHHHHHhcCCceE-EEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 77 NSVMNRAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
++.++. .++++| ++ .+..+..|++.++|+++++++++||||||+++++++.+ +++||++.+++++++||||
T Consensus 201 ~~~l~~---~~~~~g--~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~---~~~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 201 REACRT---FQAEYG--FSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSG---ALIGNTAEVVLDTLESDVL 272 (290)
T ss_dssp HHHHHH---HHHHHT--CCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGG---CCSCHHHHHHHTTCSSEEE
T ss_pred HHHHHH---HHHHcC--CCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcc---eecchHHHHHHhcCCCCEE
Confidence 333333 444456 53 56778899999999999999999999999999999998 7799999999999999999
Q ss_pred hhhHHHH
Q 030672 156 FGDLILF 162 (173)
Q Consensus 156 ~~~~~~~ 162 (173)
+.+...+
T Consensus 273 vv~~~~~ 279 (290)
T 3mt0_A 273 VLKPDDI 279 (290)
T ss_dssp EECCHHH
T ss_pred EECCCCC
Confidence 9655444
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=8e-22 Score=151.56 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=111.2
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
..+++||||+|+|+.+..+++||+.+|+..+ ++|+++||.++.... + .....+.+. .+...+..++.++.
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~--~--~~~~~~~~~----~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVSPEVAT--W--LEVPLPPGV----LRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECCCCCCC--T--TCCCCCHHH----HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEecCcccc--c--ccCCCCchh----hHHHHHHHHHHHHH
Confidence 4689999999999999999999999999988 999999998743211 1 001122222 22334555667777
Q ss_pred HHHHHHhc-----CCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVYRNF-----QNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~~~~-----~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+.+.+++. + +++++.+..|++.+.|+++++ ++||||||+++++.+.+ .++||++.+++++++||||+.
T Consensus 87 ~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~---~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 87 ALKVVEQASLRAGP--PTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPG---RLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HHHHHHHHCSSSCC--SCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTT---CCSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHhcccCCC--ceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccc---cccCcHHHHHHHhCCCCEEEE
Confidence 77777654 6 889999999999999999998 99999999999998888 679999999999999999984
Q ss_pred h
Q 030672 158 D 158 (173)
Q Consensus 158 ~ 158 (173)
+
T Consensus 160 ~ 160 (309)
T 3cis_A 160 H 160 (309)
T ss_dssp C
T ss_pred c
Confidence 4
No 18
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.86 E-value=4.2e-22 Score=150.04 Aligned_cols=144 Identities=18% Similarity=0.086 Sum_probs=111.3
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHH---HHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDV---IKAVEKYASESVNSVMNR 82 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~ 82 (173)
++||||+|+|+.+..+++||+.+|+..+ ++|+++||.++................+. .....+...+..++.++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999988 99999999875321100000000011111 111133445667788888
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC-hhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG-FIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~-~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+.+...| +++++.+..|++.+.|+++ +.++||||||+++++ ++.+ .++||++.+++++++||||+.+
T Consensus 79 ~~~~~~~~g--~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~---~~~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 79 VRQSALAAG--VAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGF---GGLGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp HHHHHHHTT--CCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTC---CSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHhCC--CCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccc---cccchhHHHHHHhCCCCEEEEC
Confidence 888888888 8899999999999999999 779999999999998 8888 6799999999999999999843
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.86 E-value=6.7e-22 Score=150.76 Aligned_cols=124 Identities=13% Similarity=0.074 Sum_probs=106.2
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
|+..+++||||+|+|+.+..+++||+.+|+..+ ++|+++||.++ +..++.+
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~---------------------------~~~~~~l 53 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEKR---------------------------RDHSAAL 53 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECSS---------------------------SCCHHHH
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeCc---------------------------HHHHHHH
Confidence 456789999999999999999999999999999 99999999873 0112234
Q ss_pred HHHHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+.+.+...| +++++.+.. |++.+.|++++++.++||||||+++++.+.+ .++||++.+++++++||||+.+
T Consensus 54 ~~~~~~~~~~~--~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~---~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 54 NDLAQELREEG--YSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKK---AILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp HHHHHHHHHTT--CCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTST---TSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHhhCC--CeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhh---cccCHHHHHHHhcCCCCEEEec
Confidence 44555555667 899999884 7999999999999999999999999998888 6799999999999999999854
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.85 E-value=1e-20 Score=129.00 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=96.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe-CCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK-PPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+++||||+|+|+.+.++++||..+|+..+ ++|+++||. +..+.....+..+.....+ ..+...+..++.++.
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~ 76 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLERANVTFGLPFPPE----IKEESKKRIERRLRE 76 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHHHHHHHHCCCCCTH----HHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEecccccccccccccCCCCChH----HHHHHHHHHHHHHHH
Confidence 579999999999999999999999999998 999999998 5300000000000000111 222333445556666
Q ss_pred HHHHH-HhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 83 AEAVY-RNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 83 ~~~~~-~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
+ +.+ .... + ++++.+..|++.+.|++++++.++||||||++|+ |++.+++++++||||+.
T Consensus 77 ~-~~~~~~~~-~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 77 V-WEKLTGST-E-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp H-HHHHHSCC-C-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEEC
T ss_pred H-HHHhhccC-C-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEee
Confidence 6 553 1222 3 5677788999999999999999999999999875 68999999999999974
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.85 E-value=9.3e-21 Score=144.59 Aligned_cols=122 Identities=23% Similarity=0.213 Sum_probs=106.9
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
..+++||||+|+|+.+.+++++|..+++..+ ++|+++||.++.. .++.++.
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~---------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD---------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC---------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch---------------------------HHHHHHH
Confidence 4679999999999999999999999999888 9999999987642 1234555
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
+.+.+++.+ +++++.+..|++.++|++++++.++||||||+++++++.+ +++||++.+++++++||||+-+
T Consensus 219 ~~~~l~~~~--~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~---~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 219 MEEVIGAEG--IEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMT---MILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHHHHHHTT--CCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHH---HHHHCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHcC--CcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccc---eeeCcHHHHHHhcCCCCEEEEC
Confidence 556666677 8888999999999999999999999999999999999999 6799999999999999999843
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.84 E-value=9.4e-21 Score=145.89 Aligned_cols=141 Identities=18% Similarity=0.141 Sum_probs=107.0
Q ss_pred CCcEEEEEecCCh-------HHHHHHHHHHhhcCCC--CCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESE-------ESMHALSWCLNNLFSP--DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASE 74 (173)
Q Consensus 4 ~~~~ILv~vd~s~-------~s~~al~~A~~la~~~--~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (173)
.+++||||+|+|+ .+.+++++|..+|+.. + ++|+++||++........+ .+........+...+
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~--a~l~ll~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 227 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKD--PDVHLLSAYPVAPINIAIE-----LPDFDPNLYNNALRG 227 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS--CCEEEEEEECCCSCSCCTT-----CTTCCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC--CeEEEEEeecCcchhhhcc-----CCcccHHHHHHHHHH
Confidence 5799999999999 5799999999999998 7 9999999998765432111 111111222222233
Q ss_pred HHHHHHHHHHHHHHhcCCce-EEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCC
Q 030672 75 SVNSVMNRAEAVYRNFQNNI-HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~v-~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
..++. +.+.+++++ + .++.++..|++.+.|+++++++++||||||+++++++.+ +++||++.+++++++||
T Consensus 228 ~~~~~---l~~~~~~~~--~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~---~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 228 QHLIA---MKELRQKFS--IPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSA---AFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp HHHHH---HHHHHHHTT--CCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHH---HHHHHHHHHHHTTCCSE
T ss_pred HHHHH---HHHHHHHhC--CCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCcc---ccccHHHHHHHhhCCCC
Confidence 33333 334445566 3 356778889999999999999999999999999999998 67999999999999999
Q ss_pred eehhhH
Q 030672 154 RLFGDL 159 (173)
Q Consensus 154 vL~~~~ 159 (173)
||+-+.
T Consensus 300 VLvv~~ 305 (319)
T 3olq_A 300 LLAIKP 305 (319)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999543
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.83 E-value=2.8e-20 Score=142.98 Aligned_cols=134 Identities=19% Similarity=0.180 Sum_probs=103.8
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.+++||||+|+|+.+.+++++|..+|+..+ ++|+++||.++..... . ........ .+..++.++.+
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~---~-----~~~~~~~~----~~~~~~~l~~~ 235 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRN--VDLVALHAWSDVDVSE---W-----PGIDWPAT----QSMAEQVLAER 235 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTT--CCEEEEEESCSSCCTT---C-----SSCCHHHH----HHHHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CEEEEEEEeecccccC---C-----CcccHHHH----HHHHHHHHHHH
Confidence 578999999999999999999999999988 9999999987643210 0 00001111 22233333333
Q ss_pred HHHHHh--cCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 84 EAVYRN--FQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 84 ~~~~~~--~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+.+.+ .+ +++++++..|++.++|+++++ ++||||||+++++++.+ +++||++.+++++++||||+.+
T Consensus 236 ~~~~~~~~~~--~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~---~l~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 236 LAGWQERYPN--VAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAG---MLVGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp HTTHHHHCTT--SCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTT---CSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHhhCCC--CcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccc---cccCcHHHHHHhcCCCCEEEeC
Confidence 333322 34 788888999999999999998 99999999999999998 7799999999999999999854
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.77 E-value=1e-18 Score=131.51 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=97.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
++++||||+|+|+.+.+++++|..++...+ ++++++||.++. +..++.++.+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~--a~l~ll~v~~~~--------------------------~~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALG--LGVRVVSVHEDP--------------------------ARAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHT--CCEEEEEECSSH--------------------------HHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCC--CEEEEEEEcCcH--------------------------HHHHHHHHHH
Confidence 578999999999999999999999999888 899999997642 0123345556
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehh
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFG 157 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~ 157 (173)
.+.+.+.| +++++++..|++.++|++++++. ||||||+ ++.+ +++||++.+++++++||||+.
T Consensus 205 ~~~l~~~~--~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~---~~~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 205 EAYLRDHG--VEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRR---LVFGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp HHHHHHTT--CCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSC---CSSCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcC--CceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccc---cEeccHHHHHHhcCCCCEEEe
Confidence 66666677 88888888999999999999977 9999999 4566 679999999999999999973
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.72 E-value=0.062 Score=35.67 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=84.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
|.+|||-+...-.+..+......+...... ..+.+|- +..+. ..+ .. ........+++.++...
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~-~~f~VLV--Pa~~~-~a~-------~~-----e~~~a~~~A~~~l~~sl 64 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPE-ARFVLLV--PAVPP-PGW-------VY-----EENEVRRRAEEEAAAAK 64 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTT-CEEEEEE--EEECC-CCS-------CC-------CHHHHHHHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCc-eEEEEEe--cCCCC-ccc-------cc-----ChHHHHHHHHHHHHHHH
Confidence 578999999888887777775666554321 4443332 22111 111 11 11234455677788888
Q ss_pred HHHHhcCCceEEE-EEEeeCChHHHHHHHHhhcC--CCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCee
Q 030672 85 AVYRNFQNNIHVK-RVVGCGDAKDVICGTVEKLE--ADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRL 155 (173)
Q Consensus 85 ~~~~~~~~~v~~~-~~~~~g~~~~~I~~~a~~~~--~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL 155 (173)
+.++..| ..++ -.+..++|..++.+...+.+ +|-||+.+..+. .++| |.-..+.+.=+ ..+|||
T Consensus 65 ~aL~~~G--~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~-vs~~---fh~DwasrAr~-~gvPVl 131 (138)
T 2iel_A 65 RALEAQG--IPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPG-LSRW---LRLDVHTQAER-FGLPVI 131 (138)
T ss_dssp HHHHTTT--CCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTT-TCHH---HHTTHHHHGGG-GSSCEE
T ss_pred HHHHHcC--CcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCch-HHHH---HhccHHHHHHh-cCCCEE
Confidence 8888888 8898 99999999999999999999 999999987753 3342 23334444444 678876
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.31 E-value=0.06 Score=43.29 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+.++|+|++++...|..++..+..+....+ .++.++||...... .......+.
T Consensus 16 ~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~--~~v~avhvdhglrg------------------------~~s~~~~~~ 69 (464)
T 3a2k_A 16 SEGAAVIVGVSGGPDSLALLHVFLSLRDEWK--LQVIAAHVDHMFRG------------------------RESEEEMEF 69 (464)
T ss_dssp SCSSBEEEECCSSHHHHHHHHHHHHHHHTTT--CBCEEEEEECTTCT------------------------HHHHHHHHH
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHHHHHcC--CeEEEEEEECCCCc------------------------cccHHHHHH
Confidence 4567899999999999999999888877777 89999999764310 011223455
Q ss_pred HHHHHHhcCCceEEEEEEee--------C-Ch--------HHHHHHHHhhcCCCEEEEecCCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGC--------G-DA--------KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+++.| +++...-.. | ++ ...+.+++++++++.|+.|.+..
T Consensus 70 v~~~~~~lg--i~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 70 VKRFCVERR--ILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHHTT--CEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHHcC--CcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 667777788 776655442 1 11 24566788899999999998654
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.11 E-value=0.097 Score=39.84 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=66.2
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCe-EEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNT-LVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
.+.++|+|++++...|.-++..+..+....+ .+ +.++|+...... ......+
T Consensus 22 ~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g--~~~v~av~vd~g~r~-------------------------~s~~~~~ 74 (317)
T 1wy5_A 22 SGERRVLIAFSGGVDSVVLTDVLLKLKNYFS--LKEVALAHFNHMLRE-------------------------SAERDEE 74 (317)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHSTTTTT--CSEEEEEEEECCSST-------------------------HHHHHHH
T ss_pred CCCCEEEEEecchHHHHHHHHHHHHHHHHcC--CCEEEEEEEECCCCc-------------------------ccHHHHH
Confidence 4568999999999999999988888776666 67 999999654210 0112344
Q ss_pred HHHHHHHhcCCceEEEEEEee--------C-Ch--------HHHHHHHHhhcCCCEEEEecCC
Q 030672 82 RAEAVYRNFQNNIHVKRVVGC--------G-DA--------KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~--------g-~~--------~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+.+.+++.| +++...-.. | ++ ...+.+.+++.+++.|+.|.+.
T Consensus 75 ~v~~~a~~lg--i~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 75 FCKEFAKERN--MKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHT--CCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHHcC--CcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 5556666777 666554431 2 22 1355667889999999999864
No 28
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=94.09 E-value=0.26 Score=40.10 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
-.||..|+..|...+ .+|..|+|.++....... .........+-|..+.+.+++.| ...
T Consensus 53 N~AL~~A~~~a~~~~--~pVl~vfildp~~~~~~~---------------~~~r~~FL~~sL~dL~~~L~~lG----~~L 111 (506)
T 3umv_A 53 NWALLHAAGLAAASA--SPLAVAFALFPRPFLLSA---------------RRRQLGFLLRGLRRLAADAAARH----LPF 111 (506)
T ss_dssp CHHHHHHHHHHHHHT--CCEEEEEECCCTTCGGGC---------------CHHHHHHHHHHHHHHHHHHHHTT----CCE
T ss_pred cHHHHHHHHhhhhcC--CCEEEEEeccchhhccCC---------------CHHHHHHHHHHHHHHHHHHHHcC----Cce
Confidence 468888888776556 789999998875321110 02233455667777777788888 445
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEe
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G 124 (173)
.++.|++.+. .+.+++.+++.|+.-
T Consensus 112 ~v~~G~p~~v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 112 FLFTGGPAEI-PALVQRLGASTLVAD 136 (506)
T ss_dssp EEESSCTTHH-HHHHHHTTCSEEEEC
T ss_pred EEEecChHHH-HHHHHhcCCCEEEec
Confidence 6678999999 999999999999974
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.88 E-value=0.34 Score=39.11 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
-.||..|...+...+ .+|..|++.++.... . .........+.+..+.+.+++.| ++ .
T Consensus 52 N~aL~~A~~~a~~~~--~~v~~vfi~dp~~~~--~---------------~~~r~~Fl~~sL~~L~~~L~~~G--~~--L 108 (482)
T 2xry_A 52 NWALLFSRAIAKEAN--VPVVVVFCLTDEFLE--A---------------GIRQYEFMLKGLQELEVSLSRKK--IP--S 108 (482)
T ss_dssp CHHHHHHHHHHHHHT--SCEEEEEEECTTGGG--S---------------CHHHHHHHHHHHHHHHHHHHHTT--CC--E
T ss_pred cHHHHHHHHHHHHcC--CcEEEEEEeChhhhc--c---------------CHHHHHHHHHHHHHHHHHHHHcC--Cc--E
Confidence 457778887765556 689999998865321 0 02233455666777777778888 44 4
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+..|++.+.|.+.+++++++.|+.-....
T Consensus 109 ~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 138 (482)
T 2xry_A 109 FFLRGDPGEKISRFVKDYNAGTLVTDFSPL 138 (482)
T ss_dssp EEEESCHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEecccc
Confidence 556799999999999999999999876543
No 30
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=92.25 E-value=0.97 Score=34.53 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=60.2
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
+.+++|++++...|.-.+..+.......+ .++.++|+.....+ + +..+-..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~--~~i~vv~vDtg~~~------------~---------------et~~~v~ 96 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGK--LPFPVMHVDTRWKF------------Q---------------EMYRFRD 96 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSC--CSSCEEEECCSCCC------------H---------------HHHHHHH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccC--CCEEEEEEECCCCC------------H---------------HHHHHHH
Confidence 56899999999999999999988876545 57888888554321 0 1233344
Q ss_pred HHHHhcCCceEEEEEEee-----C-Ch-------------HHHHHHHHhhcCCCEEEEecCCC
Q 030672 85 AVYRNFQNNIHVKRVVGC-----G-DA-------------KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~-----g-~~-------------~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.++++| +++...... | .+ .+.+.+++++++++.++.|.+..
T Consensus 97 ~~~~~~g--i~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 97 QMVEEMG--LDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp HHHHTTT--CCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHcC--CCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 4556677 555444321 2 11 02356677788999999997654
No 31
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=92.23 E-value=1.3 Score=31.75 Aligned_cols=89 Identities=9% Similarity=0.044 Sum_probs=56.3
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
||....||.|-++++.....++-.+..- . .+ .+|.+|-...+. .. .
T Consensus 1 ~~~~~~riavl~SG~Gsnl~all~~~~~-~-~~--~eI~~Vis~~~~-a~----------------------------~- 46 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNLQAIIGAIQK-G-LA--IEIRAVISNRAD-AY----------------------------G- 46 (215)
T ss_dssp ---CCEEEEEEESSCCHHHHHHHHHHHT-T-CS--EEEEEEEESCTT-CH----------------------------H-
T ss_pred CCCCCcEEEEEEeCCcHHHHHHHHHHHc-C-CC--CEEEEEEeCCcc-hH----------------------------H-
Confidence 8888999999999988887777777653 2 44 677666442221 00 0
Q ss_pred HHHHHHHHhcCCceEEEEEEeeC--C---hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g--~---~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| +++...-... + ..+++.+..++.++|++|+..-++
T Consensus 47 ---~~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 94 (215)
T 3tqr_A 47 ---LKRAQQAD--IPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMR 94 (215)
T ss_dssp ---HHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCS
T ss_pred ---HHHHHHcC--CCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchh
Confidence 24455677 7665432221 1 146789999999999999976554
No 32
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.02 E-value=0.46 Score=34.15 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=58.0
Q ss_pred CCcEEEEEecC-----ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDE-----SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNS 78 (173)
Q Consensus 4 ~~~~ILv~vd~-----s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
.|++|||-.+. .+.+..++..|..|+...+ .++++|.+-+....
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g--~~v~av~~G~~~~~----------------------------- 50 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELN--CQLEAVVAGTGLKE----------------------------- 50 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHT--CCEEEEEEESCCTT-----------------------------
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcC--CeEEEEEECCCHHH-----------------------------
Confidence 57889999885 4558999999999998888 89999988653110
Q ss_pred HHHHHHHHHHhcCCceEEEEEEee----C-C---hHHHHHHHHhhcCCCEEEEecCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGC----G-D---AKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~----g-~---~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+ .+..+| ..--.++-. + + ....|.+.++++++|+|++|...
T Consensus 51 ~~~----~~~~~G--ad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 51 IEK----QILPYG--VDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp THH----HHGGGT--CSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHH----HHHhcC--CCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111 122345 332222221 2 2 35678889999999999999743
No 33
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=90.70 E-value=5.5 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=31.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+.++|+|++++.-.|.-++.|+.+. + .+|+++++...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G--~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----G--AVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEEcC
Confidence 5679999999999999999888763 6 89999999664
No 34
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=90.50 E-value=0.2 Score=37.63 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEE
Q 030672 21 ALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRVV 100 (173)
Q Consensus 21 al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 100 (173)
++-.|-.+...++ ++|.++.|++. +...+.+++.++.+.+.++ +..+..+
T Consensus 181 mlllAylL~~nW~--A~I~L~~vV~d-----------------------e~a~~~a~~~l~~Lv~~~R-----i~a~~~v 230 (294)
T 3g40_A 181 ALLIAYKLKSNWK--ASLSFMTFAPT-----------------------AIQAQAAENFLQSLAELAR-----IPNVKMQ 230 (294)
T ss_dssp HHHHHHHHHHHHT--CEEEEEEECSS-----------------------HHHHHHHHHHHHHHHHHHT-----CCSCEEE
T ss_pred HHHHHHHHhhCcC--CeEEEEEecCC-----------------------HHHHHHHHHHHHHHHHHhc-----CCceEEE
Confidence 3344444444566 99999999774 2233455566666666554 2222223
Q ss_pred eeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 101 GCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 101 ~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+. .+..+|+..+ .++||+++|-.....|.. ..+++..+..+.||
T Consensus 231 v~-~~F~~il~~s--~~ADL~flGl~~~~df~~---------~~~~~~~~~ssc~f 274 (294)
T 3g40_A 231 VL-RENPIKSSKL--PFASLHIFSLDPNPDLDL---------ARHLMEKAGSSCIF 274 (294)
T ss_dssp EE-SSCTTTSSSC--CCCSEEEEECCSSCCHHH---------HHHHHHHHTSEEEE
T ss_pred ec-CchHHHHhhC--cCCCEEEEcCCCCCcHHH---------HHHHHHhcCCeEEE
Confidence 33 5555555555 489999999988777764 35555555555555
No 35
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=90.23 E-value=2.5 Score=29.39 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHH---hhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTV---EKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a---~~~~~dllV~G~~~~~~~~~ 133 (173)
..+.+.+.++++| ++++..+..- ...+.+.+++ ++.+++.+|.|..+...+.+
T Consensus 37 v~~~a~~~L~~~g--I~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG 93 (181)
T 4b4k_A 37 TMKYACDILDELN--IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG 93 (181)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHcC--CCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh
Confidence 4556666777888 9998888875 5555555554 55788999999888777776
No 36
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=89.78 E-value=1.1 Score=36.65 Aligned_cols=88 Identities=8% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCceE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNF---QNNIH 95 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~v~ 95 (173)
-.||..|+..+. .+ .+|..|+|.++....... . .........+-|..+.+.+++. |
T Consensus 19 N~AL~~A~~~~~-~g--~~vl~vfi~dp~~~~~~~------~--------~~~r~~Fl~~sL~~L~~~L~~~~~~G---- 77 (538)
T 3tvs_A 19 NPALLAALADKD-QG--IALIPVFIFDGESAGTKN------V--------GYNRMRFLLDSLQDIDDQLQAATDGR---- 77 (538)
T ss_dssp CHHHHTTTGGGT-TT--CBCCEEEEECSSSSCSTT------C--------CHHHHHHHHHHHHHHHHHGGGSCSSS----
T ss_pred hHHHHHHHHhCC-CC--CCEEEEEecChhhhccCC------C--------CHHHHHHHHHHHHHHHHHHHHhhcCC----
Confidence 346767766544 44 589999999875432110 0 0223345566777777778777 7
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
....++.|++.+.|.+.+++.+++.|+.-...
T Consensus 78 ~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~ 109 (538)
T 3tvs_A 78 GRLLVFEGEPAYIFRRLHEQVRLHRICIEQDC 109 (538)
T ss_dssp SCCEEEESCHHHHHHHHHHHHCEEEECEECCC
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEccCC
Confidence 34566789999999999999999999875443
No 37
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=89.14 E-value=3.5 Score=32.65 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCC-CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFS-PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~-~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
+.++|+|++++...|..++..+..+... .+ .++.++||....... ..+..+.
T Consensus 12 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g--~~v~avhvdhglr~~-------------------------s~~~~~~ 64 (433)
T 1ni5_A 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPG--VALRAIHVHHGLSAN-------------------------ADAWVTH 64 (433)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTT--CEEEEEEECCSCCSS-------------------------HHHHHHH
T ss_pred CCCEEEEEEcchHHHHHHHHHHHHHHHhcCC--CeEEEEEEECCCCcc-------------------------cHHHHHH
Confidence 4578999999999999999998888766 66 899999996543210 1122445
Q ss_pred HHHHHHhcCCceEEEEEEee----C-Ch--------HHHHHHHHhhcCCCEEEEecCCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGC----G-DA--------KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~----g-~~--------~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+++.| +++...-.. | ++ ...+.+.++ +++.|+.|.+..
T Consensus 65 v~~~~~~lg--i~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~d 119 (433)
T 1ni5_A 65 CENVCQQWQ--VPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLD 119 (433)
T ss_dssp HHHHHHHTT--CCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHH
T ss_pred HHHHHHHcC--CcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccch
Confidence 666777777 666554332 2 21 123333444 589999997653
No 38
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=88.94 E-value=6.3 Score=30.70 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
|..+.++|+|++++...|.-++..+.+ .+ .+|..+++....... . .. ......-.
T Consensus 13 ~~~~~~kVvVa~SGGvDSsv~a~lL~~----~G--~~V~~v~~~~~~~~~------------~--~~-----~~~s~~d~ 67 (380)
T 2der_A 13 MSETAKKVIVGMSGGVDSSVSAWLLQQ----QG--YQVEGLFMKNWEEDD------------G--EE-----YCTAAADL 67 (380)
T ss_dssp ----CCEEEEECCSCSTTHHHHHHHHT----TC--CEEEEEEEECCCCCS------------H--HH-----HHHHHHHH
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHH----cC--CeEEEEEEEcCcccc------------c--cC-----CCCCHHHH
Confidence 667788999999998888876666544 36 799999986432100 0 00 00112335
Q ss_pred HHHHHHHHhcCCceEEEEEEee-----------------C---Ch---------HHHHHHHHhh-cCCCEEEEecCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGC-----------------G---DA---------KDVICGTVEK-LEADTLVMGSHG 127 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~-----------------g---~~---------~~~I~~~a~~-~~~dllV~G~~~ 127 (173)
+.+++.+++.| ++....-.. | +| ...+.++|++ .++|.|+.|...
T Consensus 68 ~~a~~va~~LG--Ip~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 68 ADAQAVCDKLG--IELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHHHHHT--CCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred HHHHHHHHHcC--CcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 66667777777 665554332 1 11 2456678888 999999999754
No 39
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=88.72 E-value=1.3 Score=30.16 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=44.6
Q ss_pred HHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhhHH
Q 030672 84 EAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGDLI 160 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~~~ 160 (173)
...++..| ++..... ..+.+.+++.++++++|+|.+.....+.... +..+.+.+=... .++|++|..+
T Consensus 39 a~~l~~~G----~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~-----~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 39 ARALRDAG----FEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL-----MKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHHTT----CEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH-----HHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHCC----CEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH-----HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 34455677 4444333 3788999999999999999998875554433 333444443332 4889997654
Q ss_pred H
Q 030672 161 L 161 (173)
Q Consensus 161 ~ 161 (173)
.
T Consensus 110 ~ 110 (161)
T 2yxb_A 110 P 110 (161)
T ss_dssp C
T ss_pred c
Confidence 3
No 40
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=88.41 E-value=1.4 Score=29.06 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhhH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGDL 159 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~~ 159 (173)
+...++..| .++.. .....+.+.+++.++++++|+|.+...-...... +..+.+.+-... .++|++|..
T Consensus 23 v~~~l~~~G--~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 23 LDHAFTNAG--FNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEID-----CKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HHHHHHHTT--CEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHH-----HTTHHHHHHHTTCTTCEEEEEES
T ss_pred HHHHHHHCC--CEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHH-----HHHHHHHHHhcCCCCCEEEEECC
Confidence 334555677 33331 2234789999999999999999999876544432 344444443322 488888764
No 41
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=87.95 E-value=4.1 Score=27.65 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.+++++...+.+|.+..+.+.+.+
T Consensus 14 v~~~a~~~l~~~g--i~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg 67 (157)
T 2ywx_A 14 IAEKAVNILKEFG--VEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG 67 (157)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH
Confidence 4556666677788 8888888864 777888999887766999999888777776
No 42
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=87.73 E-value=8.1 Score=30.49 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=30.2
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.++|+|++++.-.|.-++.++.+. + .+|+.+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G--~eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----G--YDVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----T--EEEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEECC
Confidence 579999999999999888888663 6 79999999664
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=87.69 E-value=1.2 Score=32.70 Aligned_cols=80 Identities=6% Similarity=0.047 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCC--eEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030672 13 DESEESMHALSWCLNNLFSPDTNN--TLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNF 90 (173)
Q Consensus 13 d~s~~s~~al~~A~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (173)
..++.+..|++.|.++... + . +++++.+-++. .++.+..+.. .
T Consensus 34 ~lnp~d~~Ale~A~~Lke~-g--~~~~V~av~~G~~~----------------------------a~~~lr~ala----~ 78 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK-G--QAEEIIAVSIGVKQ----------------------------AAETLRTALA----M 78 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT-T--SCSEEEEEEEESGG----------------------------GHHHHHHHHH----H
T ss_pred cCCHHHHHHHHHHHHHHhc-C--CCceEEEEEeCChh----------------------------HHHHHHHHHh----c
Confidence 3466789999999999876 6 6 99999886521 1112222222 2
Q ss_pred CCceEEEEEEe------eC-Ch---HHHHHHHHhhcCCCEEEEecCCCC
Q 030672 91 QNNIHVKRVVG------CG-DA---KDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 91 ~~~v~~~~~~~------~g-~~---~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
| .+--.++- .+ ++ +..|.+.+++.++|+|++|....+
T Consensus 79 G--aD~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 79 G--ADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp T--CSEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred C--CCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 3 22222222 23 33 457777888889999999987643
No 44
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=87.56 E-value=5.1 Score=30.08 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=62.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
-+|||++.........+++|..+....| -++++++.+...... . .++ ++..++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~~~~--------------------l---~~q-l~~l~~ 73 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTDKEN--------------------L---LSQ-LPSISE 73 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---CTTC--------------------H---HHH-HHHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCCccH--------------------H---HHH-HHHHHH
Confidence 3799999887788999999999999876 899999965432110 0 111 255567
Q ss_pred HHHhcCCceEEEEEEeeC-ChHHHHHHHHhhc-----CCCEEEEecCCCC
Q 030672 86 VYRNFQNNIHVKRVVGCG-DAKDVICGTVEKL-----EADTLVMGSHGYG 129 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~-----~~dllV~G~~~~~ 129 (173)
.+++.+ +.+.+.++.- ++.+++...++.+ .+..|++|.....
T Consensus 74 ~l~~r~--v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~ 121 (294)
T 3g40_A 74 GFQEEG--VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR 121 (294)
T ss_dssp HHHHTT--CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG
T ss_pred HHHhCC--ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh
Confidence 777777 7777776664 7777777766654 4678888866543
No 45
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=87.50 E-value=0.84 Score=33.83 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=50.7
Q ss_pred EecCChHHHHHHHHHHhhcCCCCCCC--eEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 11 AVDESEESMHALSWCLNNLFSPDTNN--TLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 11 ~vd~s~~s~~al~~A~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
+...++.+..++..|.+|....+ . +++++.+-++. .++.+..+.
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g--~~~~V~av~~G~~~----------------------------~~~~lr~al---- 77 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSD--TDVEVVVVSVGPDR----------------------------VDESLRKCL---- 77 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCS--SCCEEEEEEESCGG----------------------------GHHHHHHHH----
T ss_pred CCccCHHHHHHHHHHHHHHHhcC--CCceEEEEEeCchh----------------------------HHHHHHHHH----
Confidence 44456778999999999987666 5 89999885421 111222221
Q ss_pred hcCCceEEEEEEee----C-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 89 NFQNNIHVKRVVGC----G-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 89 ~~~~~v~~~~~~~~----g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..| .+--.++-. + ++ +..|.+.+++.++|+|++|....
T Consensus 78 a~G--aD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 78 AKG--ADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp HTT--CSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred hcC--CCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 234 222222211 2 22 45777888888999999998764
No 46
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=87.24 E-value=3.6 Score=29.44 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=53.7
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+++||.|-+.++.....++-.+..- ...+ ++|.+|-. ..+... .
T Consensus 6 ~~~~ri~vl~SG~gsnl~all~~~~~-~~~~--~~I~~Vis--~~~~a~---------------------------~--- 50 (215)
T 3kcq_A 6 KKELRVGVLISGRGSNLEALAKAFST-EESS--VVISCVIS--NNAEAR---------------------------G--- 50 (215)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHTCC-C-CS--EEEEEEEE--SCTTCT---------------------------H---
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHc-CCCC--cEEEEEEe--CCcchH---------------------------H---
Confidence 35789999999988877766666531 2223 45555533 221110 0
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| +++...-...-..+++.+..++.++|++|+..-++
T Consensus 51 -l~~A~~~g--Ip~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 51 -LLIAQSYG--IPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp -HHHHHHTT--CCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCCS
T ss_pred -HHHHHHcC--CCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCce
Confidence 14456677 76654333222237899999999999999987654
No 47
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=87.18 E-value=1.3 Score=36.31 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCC---cCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSS---FDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
.-.||..|+. .+ .+|..|+|.++...... .... ..... ........+-|..+.+.+++.|
T Consensus 19 DN~AL~~A~~----~~--~~vlpvfi~dp~~~~~~~~~~~~g-~~~~g-------~~r~~Fl~~sL~~L~~~L~~~G--- 81 (537)
T 3fy4_A 19 DNPALEYASK----GS--EFMYPVFVIDPHYMESDPSAFSPG-SSRAG-------VNRIRFLLESLKDLDSSLKKLG--- 81 (537)
T ss_dssp TCHHHHHHHT----TC--SCEEEEEEECHHHHSCCTTSSSSB-CSSCB-------HHHHHHHHHHHHHHHHHHHHTT---
T ss_pred hhHHHHHHHh----cC--CCEEEEEEeChhhhcccccccccc-cccCC-------HHHHHHHHHHHHHHHHHHHHcC---
Confidence 3456777764 25 68999999885422100 0000 00000 2233455566777777777788
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
....++.|++.+.|.+.+++.+++-|+.-...
T Consensus 82 -~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~ 113 (537)
T 3fy4_A 82 -SRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDT 113 (537)
T ss_dssp -CCCEEEESCHHHHHHHHHTTSCEEEEEECCCC
T ss_pred -CceEEEECCHHHHHHHHHHHcCCCEEEEeccc
Confidence 44566779999999999999999999987654
No 48
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=87.16 E-value=4.8 Score=32.93 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCC--CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 18 SMHALSWCLNNLFS--PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 18 s~~al~~A~~la~~--~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
...||..|+..+.. .+ .+|..|++.++....... ..........+.+..+.+.+++.| ++
T Consensus 43 DN~aL~~A~~~~~~~~~~--~pv~~vfi~dp~~~~~~~--------------~~~~r~~Fl~~sL~~L~~~L~~~G--~~ 104 (543)
T 2wq7_A 43 DNPALSHIFTAANAAPGR--YFVRPIFILDPGILDWMQ--------------VGANRWRFLQQTLEDLDNQLRKLN--SR 104 (543)
T ss_dssp TCHHHHHHHHHHHHSTTT--EEEEEEEEECTTGGGCTT--------------SCHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred hHHHHHHHHHhCccccCC--CeEEEEEEECchhhcccC--------------CCHHHHHHHHHHHHHHHHHHHHCC--Ce
Confidence 34578888776543 35 679999998875321100 002233445566777777777778 44
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEecC
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
..+..|++.+.|.+.+++.+++.|+.-..
T Consensus 105 --L~v~~g~~~~~l~~l~~~~~~~~v~~~~~ 133 (543)
T 2wq7_A 105 --LFVVRGKPAEVFPRIFKSWRVEMLTFETD 133 (543)
T ss_dssp --CEEEESCHHHHHHHHHHHTTEEEEEEECC
T ss_pred --EEEEeCCHHHHHHHHHHHcCCCEEEEecC
Confidence 45567999999999999999999888754
No 49
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=87.01 E-value=7.1 Score=30.33 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=60.4
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNR 82 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (173)
.+.++|+|++++...|.-++..+.+. + .++..+++......... .. ....+-.+.
T Consensus 7 ~~~~kVlVa~SGGvDSsv~a~lL~~~----G--~~V~~v~~~~~~~~~~~------~~-------------c~~~~d~~~ 61 (376)
T 2hma_A 7 NSKTRVVVGMSGGVDSSVTALLLKEQ----G--YDVIGIFMKNWDDTDEN------GV-------------CTATEDYKD 61 (376)
T ss_dssp GGGSEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEECCCCCC-----------------------CHHHHHHHH
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHc----C--CcEEEEEEECCCccccc------cc-------------CCCHHHHHH
Confidence 35679999999999888777666553 6 79999998654221000 00 001122455
Q ss_pred HHHHHHhcCCceEEEEEEee-----------------C---Ch---------HHHHHHHHhhcCCCEEEEecCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGC-----------------G---DA---------KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~-----------------g---~~---------~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+++.++..| ++....-.. | +| ...+.++|++.++|.|+.|...
T Consensus 62 a~~va~~lG--Ip~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 62 VVAVADQIG--IPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHHHT--CCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHhC--CcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 556666666 555444321 1 11 3456788999999999999743
No 50
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=86.87 E-value=5.9 Score=29.08 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCC--eEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030672 14 ESEESMHALSWCLNNLFSPDTNN--TLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQ 91 (173)
Q Consensus 14 ~s~~s~~al~~A~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 91 (173)
.++.+..|++.|.++... + . +++++.+-++. .++.+..+.. .|
T Consensus 38 lnp~d~~Ale~A~~Lke~-g--~~~~V~av~~G~~~----------------------------a~~~lr~ala----~G 82 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-K--LVKEVIAVSCGPAQ----------------------------CQETIRTALA----MG 82 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-T--SCSEEEEEEEESTT----------------------------HHHHHHHHHH----HT
T ss_pred CCHHHHHHHHHHHHHHhc-C--CCceEEEEEeCChh----------------------------HHHHHHHHHh----cC
Confidence 345688999999999776 5 5 99999886531 1112222222 23
Q ss_pred CceEEEEEEe------eC-Ch---HHHHHHHHhhcCCCEEEEecCCCC
Q 030672 92 NNIHVKRVVG------CG-DA---KDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 92 ~~v~~~~~~~------~g-~~---~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.+--.++- .+ ++ +..|.+.+++.++|+|++|....+
T Consensus 83 --aD~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 83 --ADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp --CSEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred --CCEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccC
Confidence 22222222 23 33 457778888889999999987643
No 51
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=86.62 E-value=5.3 Score=27.45 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++++ +.+++.+|.+..+.+.+..
T Consensus 26 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg 82 (170)
T 1xmp_A 26 TMKYACDILDELN--IPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG 82 (170)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH
Confidence 4555666667788 8888888764 55666677665 4568999999888777776
No 52
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=86.59 E-value=3.6 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+.+...++++| ++++..+..- ...+.+.++ +++.+++.+|.+..+.+.+.+
T Consensus 27 v~~~a~~~l~~~g--i~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg 83 (173)
T 4grd_A 27 VMKHAVAILQEFG--VPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG 83 (173)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh
Confidence 4555666677788 8888887764 555555555 445788999999888777766
No 53
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=86.44 E-value=7.1 Score=27.83 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=56.1
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
|+||.|-++++.....++-.+..- ...+ ++|.+|-...+ .. ...
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~l~--~eI~~Visn~~--~a-------------------------------~v~ 45 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQLP--CEVALLITDKP--GA-------------------------------KVV 45 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TCCS--SEEEEEEESCS--SS-------------------------------HHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CCCC--cEEEEEEECCC--Cc-------------------------------HHH
Confidence 579999999988888888777753 3344 67776644221 10 233
Q ss_pred HHHHhcCCceEEEEEEeeC--Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 85 AVYRNFQNNIHVKRVVGCG--DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g--~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+++.| +++....... +. ..++.+..++.++|++|+..-++
T Consensus 46 ~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 92 (211)
T 3p9x_A 46 ERVKVHE--IPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMR 92 (211)
T ss_dssp HHHHTTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred HHHHHcC--CCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchh
Confidence 5566677 7765433221 22 36889999999999999987654
No 54
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=86.32 E-value=9.4 Score=30.69 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=62.7
Q ss_pred EEEEEe--cCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 7 RVVVAV--DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 7 ~ILv~v--d~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
.+|+=+ |.--....||..|+.. + .++..|++.++........ +..... ........+.+..+.
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~~--~~~~~~-------~~r~~Fl~~sL~~L~ 71 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALKS----G--LAITAVYCYDPRQFAQTHQ--GFAKTG-------PWRSNFLQQSVQNLA 71 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----T--SEEEEEEEECGGGGSBCTT--SCBSSC-------HHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCcchHHHHHHHHhc----C--CCEEEEEEECchhhccccc--ccCCCC-------HHHHHHHHHHHHHHH
Confidence 444444 3333334577777652 4 5788899988643221000 000000 122344556677777
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+++.| ++ ..+..|++.+.|.+.+++++++.|+.-....
T Consensus 72 ~~L~~~G--~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 111 (489)
T 1np7_A 72 ESLQKVG--NK--LLVTTGLPEQVIPQIAKQINAKTIYYHREVT 111 (489)
T ss_dssp HHHHHTT--CC--EEEEESCHHHHHHHHHHHTTEEEEEEECCCS
T ss_pred HHHHHCC--Cc--EEEEECCHHHHHHHHHHHcCCCEEEEecccC
Confidence 7777788 44 4556799999999999999999988875543
No 55
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=85.52 E-value=5.4 Score=27.52 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++++ +.+++.+|.+..+.+.+..
T Consensus 27 v~~~a~~~L~~~G--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg 83 (174)
T 3kuu_A 27 TMQFAADVLTTLN--VPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG 83 (174)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH
Confidence 4556666677788 8888887764 55666666654 5678999998888777766
No 56
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=84.93 E-value=6.9 Score=26.79 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++++ +.+++.+|.+..+.+.+..
T Consensus 20 v~~~a~~~l~~~g--i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg 76 (166)
T 3oow_A 20 TMKECCDILDNLG--IGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG 76 (166)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH
Confidence 4556666677788 8888888774 55666666654 4578999999888777766
No 57
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=84.64 E-value=4.8 Score=27.64 Aligned_cols=53 Identities=6% Similarity=0.021 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++ +++.+++.+|.+..+.+.+..
T Consensus 21 v~~~a~~~l~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg 77 (169)
T 3trh_A 21 TMETAFTELKSLG--IPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG 77 (169)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH
Confidence 4556666677788 8888887764 545555555 445789999998888777766
No 58
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=83.37 E-value=2.5 Score=29.85 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=42.7
Q ss_pred HHHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC---CCCeehhhH
Q 030672 84 EAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS---QPSRLFGDL 159 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~---~~pvL~~~~ 159 (173)
...++..| . +.... ...|.+.+.+.++++++|+|.+.......... +..+.+.+=+.. .+||++|..
T Consensus 109 a~~l~~~G--~--~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 109 AMMLESGG--F--TVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN-----MKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHHTT--C--EEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH-----HHHHHHHHHHTTCGGGCEEEEEST
T ss_pred HHHHHHCC--C--EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH-----HHHHHHHHHhcCCCCCCeEEEECC
Confidence 33444566 3 33322 34789999999999999999998764433332 333333443332 389999765
Q ss_pred HH
Q 030672 160 IL 161 (173)
Q Consensus 160 ~~ 161 (173)
..
T Consensus 180 ~~ 181 (210)
T 1y80_A 180 PL 181 (210)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 59
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=83.06 E-value=9.9 Score=26.67 Aligned_cols=35 Identities=6% Similarity=0.007 Sum_probs=28.1
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.+|+|++++...|.-++..+... + .++.++|+...
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~----~--~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQI----R--PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHH----S--TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHh----C--CCCeEEEeeCC
Confidence 48999999999999888888776 2 35778888654
No 60
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=82.83 E-value=8.3 Score=31.36 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=63.0
Q ss_pred cEEEEEe--cCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAV--DESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 6 ~~ILv~v--d~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
+.+|+=+ |.--....||..|++. + .+|..|++.++........ .++.... ........+.+..+
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~--~~v~~vfi~dp~~~~~~~~-~~~~~~~-------~~r~~Fl~~sL~~L 105 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----S--DTILPVYCLDPRLFHTTHF-FNFPKTG-------ALRGGFLMECLVDL 105 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----C--SEEEEEEEECGGGGSBCTT-TCCBSSC-------HHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----C--CcEEEEEEECchhhccccc-ccCCCCC-------HHHHHHHHHHHHHH
Confidence 3444444 3322234577777653 4 5788999988643211000 0000000 22334455667777
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| ++ ..++.|++.+.|.+.+++++++-|+.-....
T Consensus 106 ~~~L~~~G--~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~ 146 (525)
T 2j4d_A 106 RKNLMKRG--LN--LLIRSGKPEEILPSLAKDFGARTVFAHKETC 146 (525)
T ss_dssp HHHHHHTT--CC--CEEEESCHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHcC--Ce--EEEEeCCHHHHHHHHHHHcCCCEEEEeccCC
Confidence 77777788 44 4556799999999999999999999875443
No 61
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=82.62 E-value=8.2 Score=31.03 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
..||..|+.. . .+|..|++.++....... ..........+.+..+.+.+++.| ++ .
T Consensus 18 n~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~--------------~~~~r~~fl~~sL~~L~~~L~~~G--~~--L 73 (484)
T 1owl_A 18 NIGLAAARAQ----S--AQLIGLFCLDPQILQSAD--------------MAPARVAYLQGCLQELQQRYQQAG--SR--L 73 (484)
T ss_dssp CHHHHHHHHH----C--SCEEEEEEECHHHHTCTT--------------CCHHHHHHHHHHHHHHHHHHHHHT--SC--E
T ss_pred hHHHHHHHhc----C--CCEEEEEEEcchhhcCCC--------------CCHHHHHHHHHHHHHHHHHHHHCC--Ce--E
Confidence 3567777663 3 468888888754211000 002233445566777777777778 44 4
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+..|++.+.|.+.+++++++.|+.-...
T Consensus 74 ~v~~g~~~~~l~~l~~~~~~~~v~~~~~~ 102 (484)
T 1owl_A 74 LLLQGDPQHLIPQLAQQLQAEAVYWNQDI 102 (484)
T ss_dssp EEEESCHHHHHHHHHHHTTCSEEEEECCC
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEeccC
Confidence 55679999999999999999999986543
No 62
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=82.22 E-value=6.7 Score=27.27 Aligned_cols=53 Identities=13% Similarity=0.279 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~ 133 (173)
..+.+...++.+| ++++..+..- ...+.+.++++ +.+++.+|.+..+.+.+.+
T Consensus 36 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg 92 (182)
T 1u11_A 36 TMRHADALLTELE--IPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG 92 (182)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH
Confidence 4555666667788 8888887764 55666677665 4568999999888777776
No 63
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=82.17 E-value=7.1 Score=26.64 Aligned_cols=53 Identities=11% Similarity=0.240 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHH---hhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTV---EKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a---~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.+++ ++.+++.+|.+..+.+.+..
T Consensus 18 v~~~a~~~l~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg 74 (163)
T 3ors_A 18 IMQESCNMLDYFE--IPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG 74 (163)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH
Confidence 4556666677788 8888887764 5566666665 45678999999888777776
No 64
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=81.86 E-value=7.2 Score=26.52 Aligned_cols=53 Identities=8% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hc-CCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KL-EADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~-~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++++ +. +++.+|.+..+.+.+..
T Consensus 17 v~~~a~~~l~~~g--i~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg 74 (159)
T 3rg8_A 17 HAEKIASELKTFG--IEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG 74 (159)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH
Confidence 4556666677788 8888887764 55666666654 32 58999999888887876
No 65
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=80.87 E-value=8.6 Score=30.55 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=55.0
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
.||..|+.. + .+|..|++.++........ ..........+.+..+.+.+++.| ++ ..
T Consensus 17 ~aL~~A~~~----~--~~v~~vfi~dp~~~~~~~~-------------~~~~r~~Fl~~sL~~L~~~L~~~G--~~--L~ 73 (440)
T 2e0i_A 17 TGLNYALSE----C--DRVIPVFIADPRQLINNPY-------------KSEFAVSFMINSLLELDDELRKKG--SR--LN 73 (440)
T ss_dssp HHHHHHHHH----S--SEEEEEEEECHHHHSSCTT-------------CCHHHHHHHHHHHHHHHHHHHTTT--CC--CE
T ss_pred HHHHHHHhc----C--CCEEEEEEeChhhhccCCc-------------CCHHHHHHHHHHHHHHHHHHHHcC--Ce--EE
Confidence 467777663 5 6899999988642111000 002233455667777778888888 44 45
Q ss_pred EeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 100 VGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 100 ~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+..|++.+.|.+.++ +++.|+.-...
T Consensus 74 v~~g~~~~~l~~l~~--~~~~v~~~~~~ 99 (440)
T 2e0i_A 74 VFFGEAEKVVSRFFN--KVDAIYVNEDY 99 (440)
T ss_dssp EEESCHHHHHHHHCT--TCSEEEEECCC
T ss_pred EEECCHHHHHHHHHc--CCCEEEEeccc
Confidence 567999999999999 99999886543
No 66
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=80.77 E-value=9 Score=26.65 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHh---hcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVE---KLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~---~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++++ +.+++.+|.+..+.+.+..
T Consensus 28 v~~~a~~~L~~~G--i~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg 84 (183)
T 1o4v_A 28 VMKQAAEILEEFG--IDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG 84 (183)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHH
Confidence 4555666677788 8888888864 55556666654 5678999999888777776
No 67
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=80.30 E-value=15 Score=26.83 Aligned_cols=39 Identities=5% Similarity=-0.100 Sum_probs=31.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+.+++|++++...|.-.+..+..+... + ..+.++|+...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~--~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-Y--YMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-S--CCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-C--CCeeEEEecCC
Confidence 457999999999999999998887654 4 57888888543
No 68
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=79.73 E-value=8 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCCCEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEADTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~dllV~G~~~~~~~~~ 133 (173)
..+++...++.+| ++++..+..- ...+.+.++ +++.+++.+|.+..+.+.+..
T Consensus 22 v~~~a~~~L~~~g--i~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg 78 (174)
T 3lp6_A 22 VMADAAAALAEFD--IPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG 78 (174)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH
Confidence 4556666677788 8888877764 444555555 556789999999888777776
No 69
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=78.83 E-value=17 Score=27.29 Aligned_cols=93 Identities=11% Similarity=0.153 Sum_probs=56.5
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCC------------------CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFS------------------PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKA 67 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~------------------~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 67 (173)
.+|+|++++...|.-++..+...+.. .+ .++.++++.....+ +
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~i~vv~iDtg~~f------------p----- 114 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPM--QRLPTVFIDQEETF------------P----- 114 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCC--CCEEEEECCCTTCC------------H-----
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCC--CCeeEEEEeCCCCC------------H-----
Confidence 47999999999998888777665311 13 56888888543321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEee----CChHHHHHHHHhh-cCCCEEEEecCCCC
Q 030672 68 VEKYASESVNSVMNRAEAVYRNFQNNIHVKRVVGC----GDAKDVICGTVEK-LEADTLVMGSHGYG 129 (173)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~----g~~~~~I~~~a~~-~~~dllV~G~~~~~ 129 (173)
+..+-+.+.++++| +++...... ....+.+.++++. ...+.+++|.+..-
T Consensus 115 ----------et~~fv~~~~~~yg--l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 115 ----------TLENFVLETSERYC--LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp ----------HHHHHHHHHHHHTT--EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred ----------HHHHHHHHHHHHcC--CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 12333334445667 665433221 2345666677776 46889999987643
No 70
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=78.71 E-value=23 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=28.9
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|++++...|.-++..+.+. + .+++++++...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g--~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----G--VDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----T--CEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----C--CeEEEEEEeCC
Confidence 68999999999998887777665 6 79999998653
No 71
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=77.82 E-value=6.7 Score=28.69 Aligned_cols=74 Identities=14% Similarity=0.010 Sum_probs=45.0
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhc-CCCCCeehhhHHH
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLP-NSQPSRLFGDLIL 161 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~-~~~~pvL~~~~~~ 161 (173)
+...++..| .++.. +....|.+.+++.++++++|+|.+.......... +..+.+.+=+ ...+||++|....
T Consensus 143 va~~L~~~G--~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~-----~~~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 143 VTALLRANG--YNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA-----FKEVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp HHHHHHHTT--CEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTH-----HHHHHHHHHTTTCCCCEEEESTTC
T ss_pred HHHHHHHCC--CEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH-----HHHHHHHHHhcCCCCcEEEECccC
Confidence 334455677 44322 2234789999999999999999998754433332 2223333322 2459999977544
Q ss_pred HHH
Q 030672 162 FQI 164 (173)
Q Consensus 162 ~~~ 164 (173)
.+.
T Consensus 215 ~~~ 217 (258)
T 2i2x_B 215 NQD 217 (258)
T ss_dssp CHH
T ss_pred CHH
Confidence 333
No 72
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=77.16 E-value=3.5 Score=29.41 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=44.6
Q ss_pred HHHHHHhcCCceEEEEEE-eeCChHHHHHHHHhhcCCCEEEE--ecCCCChhhhhhhhcccchHHHHhcCC---CCCeeh
Q 030672 83 AEAVYRNFQNNIHVKRVV-GCGDAKDVICGTVEKLEADTLVM--GSHGYGFIKRYKQLILAALSFQFLPNS---QPSRLF 156 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~-~~g~~~~~I~~~a~~~~~dllV~--G~~~~~~~~~~~~~~~gs~~~~ll~~~---~~pvL~ 156 (173)
+...++..| ++..- ....|.+.|++.++++++|+|.+ ...-...... +..+.+.+-... .+||++
T Consensus 112 v~~~l~~~G----~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~-----~~~~i~~l~~~~~~~~v~v~v 182 (215)
T 3ezx_A 112 VTTMLGANG----FQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLG-----QKDLMDRLNEEKLRDSVKCMF 182 (215)
T ss_dssp HHHHHHHTS----CEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTH-----HHHHHHHHHHTTCGGGSEEEE
T ss_pred HHHHHHHCC----CeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHH-----HHHHHHHHHHcCCCCCCEEEE
Confidence 344556677 33332 23578999999999999999999 5433222221 334445554443 589999
Q ss_pred hhHHHHH
Q 030672 157 GDLILFQ 163 (173)
Q Consensus 157 ~~~~~~~ 163 (173)
|..+.-|
T Consensus 183 GG~~~~~ 189 (215)
T 3ezx_A 183 GGAPVSD 189 (215)
T ss_dssp ESSSCCH
T ss_pred ECCCCCH
Confidence 7654433
No 73
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=75.54 E-value=2.5 Score=26.27 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-----ChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-----GFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-----~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
...+.|.+++++++++.+|+|-... +... ...-..+++|-.. ++||.+.|
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~----~~~~~f~~~L~~~-~lpV~~~D 92 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQA----GKVLPLVEALRAR-GVEVELWD 92 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS----STTHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHH----HHHHHHHHHHhcC-CCCEEEEC
Confidence 3468899999999999999994321 1111 1122235556555 78887643
No 74
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=73.58 E-value=21 Score=25.20 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=29.0
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
+++++|++++...|.-++.++.+. + .+++.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~--~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----Y--DDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----C--CCEEEEEEECC
Confidence 579999999999999888887764 4 58888888653
No 75
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=72.54 E-value=33 Score=26.89 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
+..+++|++++...|.-++..+... | .++.++|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~~----G--~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMKR----G--VSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHB----T--EEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHHc----C--CcEEEEEEeC
Confidence 3578999999999998887777653 6 8999999964
No 76
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=71.69 E-value=34 Score=26.76 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=29.2
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|++++...|.-++.++.+. .+ .+++++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g--~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YR--AEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HT--CEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hC--CcEEEEEEeCC
Confidence 47999999999999888887654 25 78999998654
No 77
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=71.43 E-value=23 Score=24.58 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=29.1
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.++++|++++...|.-++..+.+. + .++..+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~----~--~~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE----F--EEVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc----C--CceEEEEEeCC
Confidence 468999999999999888877664 4 58889998764
No 78
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=71.21 E-value=24 Score=24.88 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=53.4
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
+||.|-++++.....++-.+..- ...+ .+|.+|-..++... ..+
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~--~~I~~Vvs~~~~~~---------------------------------~~~ 44 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSS--AQIDIVISNKAAVA---------------------------------GLD 44 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCS--CEEEEEEESSTTCH---------------------------------HHH
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCC--cEEEEEEeCCCChH---------------------------------HHH
Confidence 47899999988888877766542 2234 66666644332110 024
Q ss_pred HHHhcCCceEEEEEEee--CCh---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 86 VYRNFQNNIHVKRVVGC--GDA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~--g~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+++.| +++...... .+. .+++.+..++.++|++|+..-++
T Consensus 45 ~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~ 90 (209)
T 1meo_A 45 KAERAG--IPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMR 90 (209)
T ss_dssp HHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCCS
T ss_pred HHHHcC--CCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchhh
Confidence 556677 776543322 121 35788899999999999987554
No 79
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=71.01 E-value=16 Score=29.19 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
.||..|+.. .. .+|..|+|.++...... ...........+.+..+.+.+++.| +++...
T Consensus 17 ~aL~~A~~~---~~--~~v~~vfi~dp~~~~~~--------------~~~~~r~~fl~~sL~~L~~~L~~~G--~~L~v~ 75 (471)
T 1dnp_A 17 LALAAACRN---SS--ARVLALYIATPRQWATH--------------NMSPRQAELINAQLNGLQIALAEKG--IPLLFR 75 (471)
T ss_dssp HHHHHHSSS---TT--SEEEEEEEECHHHHHHT--------------TCCHHHHHHHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHhC---CC--CCEEEEEEECchhhccC--------------CCCHHHHHHHHHHHHHHHHHHHHCC--CeEEEE
Confidence 456666542 13 58999999885321000 0002233455666777777777788 555443
Q ss_pred Ee--eCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 100 VG--CGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 100 ~~--~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.. .|++.+.|.+.+++++++.|+.-...
T Consensus 76 ~~~~~g~~~~~l~~l~~~~~~~~v~~~~~~ 105 (471)
T 1dnp_A 76 EVDDFVASVEIVKQVCAENSVTHLFYNYQY 105 (471)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred EccCCCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 22 68999999999999999999985443
No 80
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=70.93 E-value=25 Score=24.97 Aligned_cols=85 Identities=16% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.+.||.|-++++.....++-.+.. ...+ ++|.+|-. ++ +. ..
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~--~eI~~Vis-~~-~a--------------------------------~~ 52 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYP--ARVVAVGV-DR-EC--------------------------------RA 52 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCS--EEEEEEEE-SS-CC--------------------------------HH
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCC--CeEEEEEe-CC-ch--------------------------------HH
Confidence 467999999998887777666653 2334 67766533 22 11 01
Q ss_pred HHHHHhcCCceEEEEEEeeC--Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG--DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g--~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++...-... +. .+++.+..++.++|++|+..-++
T Consensus 53 ~~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 53 AEIAAEAS--VPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp HHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 34556677 7665542221 11 46788999999999999987654
No 81
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=70.93 E-value=40 Score=27.19 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
...||..|+.. + ++..|+|.++....... .. ........+.|..+.+.+++.| +++
T Consensus 26 DN~aL~~A~~~----~---~v~pvfi~dp~~~~~~~-------~~-------~~~~~fl~~sL~~L~~~L~~~G--~~L- 81 (509)
T 1u3d_A 26 DNPALAAAVRA----G---PVIALFVWAPEEEGHYH-------PG-------RVSRWWLKNSLAQLDSSLRSLG--TCL- 81 (509)
T ss_dssp TCHHHHHHHHH----S---CEEEEEEECGGGGTTCC-------CC-------HHHHHHHHHHHHHHHHHHHHTT--CCE-
T ss_pred hhHHHHHHHhC----C---CEEEEEEECchhcccCC-------cc-------hHHHHHHHHHHHHHHHHHHHCC--CeE-
Confidence 34577777764 3 46678887764321100 00 1111245566777777777788 554
Q ss_pred EEEee-CChHHHHHHHHhhcCCCEEEEecC
Q 030672 98 RVVGC-GDAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 98 ~~~~~-g~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
.+.. |++.+.|.+.+++++++.|+.-..
T Consensus 82 -~v~~~g~~~~~l~~l~~~~~~~~V~~~~~ 110 (509)
T 1u3d_A 82 -ITKRSTDSVASLLDVVKSTGASQIFFNHL 110 (509)
T ss_dssp -EEEECSCHHHHHHHHHHHHTCCEEEEECC
T ss_pred -EEEeCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 4455 699999999999999999988654
No 82
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=69.95 E-value=6.4 Score=28.01 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=31.0
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
.+++|++++.++-.+.++++..-.|.+. + .+++++-.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~-g--~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE-E--REVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT-T--CEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEC
Confidence 4589999999999999999998888664 6 88888744
No 83
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=69.52 E-value=33 Score=25.76 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++.....++-++..- ...+ ++|.+|-...+. +
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~I~~Visn~~~-----------------------------------~ 145 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHS-DELD--CDIACVISNHQD-----------------------------------L 145 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHT-TCSC--SEEEEEEESSST-----------------------------------T
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHC-CCCC--cEEEEEEECcHH-----------------------------------H
Confidence 5779999999988887777777653 3334 677665432211 0
Q ss_pred HHHHHhcCCceEEEEEEeeC--Ch--HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG--DA--KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g--~~--~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++....... .. .+++++..++.++|++|+..-++
T Consensus 146 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 146 RSMVEWHD--IPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp HHHHHTTT--CCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred HHHHHHcC--CCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhh
Confidence 12355677 7765542221 22 35789999999999999986553
No 84
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=69.26 E-value=28 Score=26.02 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=28.8
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.++++|++++...|.-++..+.+. .+ .+++++|+...
T Consensus 20 ~~kvlvalSGGvDSsvla~ll~~~---~g--~~v~av~vd~g 56 (308)
T 2dpl_A 20 DSKAIIALSGGVDSSTAAVLAHKA---IG--DRLHAVFVNTG 56 (308)
T ss_dssp TSCEEEECCSSHHHHHHHHHHHHH---HG--GGEEEEEEECS
T ss_pred CCCEEEEEeChHHHHHHHHHHHHh---hC--CCEEEEEEcCC
Confidence 368999999999988777777664 25 68999998653
No 85
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=68.74 E-value=7 Score=27.31 Aligned_cols=35 Identities=6% Similarity=0.026 Sum_probs=29.1
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
|+||++++.++-.+.++.+..-.+.+. + .+++++-
T Consensus 1 mk~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~ 35 (189)
T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEEL-D--FSVDLVI 35 (189)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHT-T--CEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 379999999999889999988888654 6 7888774
No 86
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=68.71 E-value=3.2 Score=25.57 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCCh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF 130 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~ 130 (173)
.+..+....++.| ..+.+.-.--...+.|.+.++++|+.++|+-.....+
T Consensus 14 tlrkfkdiikkng--fkvrtvrspqelkdsieelvkkynativvvvvddkew 63 (134)
T 2l69_A 14 TLRKFKDIIKKNG--FKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEW 63 (134)
T ss_dssp HHHHHHHHHHHTT--CEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHH
T ss_pred HHHHHHHHHHhcC--ceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHH
Confidence 4555666666666 5544433223446777777777777777776655443
No 87
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=67.10 E-value=17 Score=24.16 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+.+.+.+.+.+.| ++++..-.... ....+..... ++|.||+|+....
T Consensus 21 iA~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 21 LAQAIINGITKTG--VGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHTT--CEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHHCC--CeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 3333344444456 66655544444 4666666666 7999999987654
No 88
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=65.45 E-value=6.3 Score=20.46 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=22.1
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCE
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADT 120 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dl 120 (173)
-.+..+.... +..++|++|+++.++|-
T Consensus 10 kkvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 10 KKVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred ceeEEEEeeCCchhHHHHHHHHHccchh
Confidence 4567777777 88999999999998874
No 89
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=65.28 E-value=8.5 Score=27.00 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=29.1
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.++|++++.++-.+.++.+....|.+ .+ .+++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g--~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FF--KEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TS--SEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 47999999999999999988888854 46 8888774
No 90
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=65.13 E-value=22 Score=27.89 Aligned_cols=81 Identities=16% Similarity=0.023 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 030672 19 MHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKR 98 (173)
Q Consensus 19 ~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 98 (173)
..||..|... ++|..|++.++.... . .........+.+..+.+.+++.| ++ .
T Consensus 17 n~aL~~A~~~-------~~v~~vfi~d~~~~~-~----------------~~~r~~fl~~sL~~l~~~L~~~g--~~--l 68 (420)
T 2j07_A 17 HPALLEALAR-------GPVVGLVVLDPNNLK-T----------------TPRRRAWFLENVRALREAYRARG--GA--L 68 (420)
T ss_dssp CHHHHHHHTT-------SCEEEEEEECHHHHS-S----------------CHHHHHHHHHHHHHHHHHHHHTT--CC--E
T ss_pred cHHHHHHHhC-------CCEEEEEEECCcccc-C----------------CHHHHHHHHHHHHHHHHHHHHCC--Ce--E
Confidence 3466666542 367888887753211 0 12233455666777777788888 44 4
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+..|++.+.|.+.+++++++.|+.-...
T Consensus 69 ~~~~g~~~~~l~~l~~~~~~~~v~~~~~~ 97 (420)
T 2j07_A 69 WVLEGLPWEKVPEAARRLKAKAVYALTSH 97 (420)
T ss_dssp EEEESCHHHHHHHHHHHTTCSEEEEECCC
T ss_pred EEEeCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 55679999999999999999999986544
No 91
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=64.77 E-value=4.1 Score=26.97 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhhcCCCEEEEecC----CC-ChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSH----GY-GFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~----~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
...+.|.+.+++++++.||+|-+ |. +.... ..-..+++|-...++||.+.|
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~----~~~~f~~~L~~~~~lpV~~~D 95 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA----RARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH----HHHHHHHHHHHHHCCCEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH----HHHHHHHHHHHHhCCCEEEEc
Confidence 34789999999999999999933 22 21111 122234444444467887643
No 92
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=64.57 E-value=20 Score=29.12 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=28.4
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
++++|++++.-.|.-++..+.+. .+ .+++++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G--~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IG--DQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HG--GGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hC--CeEEEEEeccC
Confidence 78999999999988777776654 35 68999998553
No 93
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.16 E-value=22 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK 115 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~ 115 (173)
.++.+.+..++.| .++.+...-++....+...+++
T Consensus 89 rleefsrevrrrg--fevrtvtspddfkkslerlire 123 (134)
T 2l69_A 89 RLEEFSREVRRRG--FEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHHTT--CCEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ceEEEecChHHHHHHHHHHHHH
Confidence 3555555566666 6666655545555555555553
No 94
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=64.06 E-value=36 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
|+..+.++.+++|+..- .++++.+-.+ + ..+..++|
T Consensus 1 ~~~~~~~livAlD~~~~-~~a~~~~~~~----~--~~~~~ikv 36 (221)
T 3exr_A 1 MTKQLPNLQVALDHSNL-KGAITAAVSV----G--NEVDVIEA 36 (221)
T ss_dssp --CCCCEEEEEECCSSH-HHHHHHHHHH----G--GGCSEEEE
T ss_pred CCCCCCCEEEEeCCCCH-HHHHHHHHhh----C--CCceEEEE
Confidence 77778899999999764 5677777665 3 34445566
No 95
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=63.30 E-value=19 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+.+.+.+.+.| ++++..-........+..... ++|.||+|+...+
T Consensus 19 ~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 19 QAIGRGLVKTG--VAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHTT--CCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHhCC--CeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 33333444456 666555444444555655555 7899999987654
No 96
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=63.14 E-value=39 Score=24.21 Aligned_cols=43 Identities=5% Similarity=-0.001 Sum_probs=28.6
Q ss_pred HHHHHhcCCceEEEEEEeeC--C---hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g--~---~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| +++....... + -.+++.+..++.++|++|+..-++
T Consensus 65 ~~~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 112 (229)
T 3auf_A 65 LERARRAG--VDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMR 112 (229)
T ss_dssp HHHHHHTT--CEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred HHHHHHcC--CCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhH
Confidence 34556677 7765432222 1 136788999999999999986554
No 97
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=62.36 E-value=46 Score=24.82 Aligned_cols=85 Identities=9% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++..+..++-++..- ...+ ++|.++-...+ ..
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~--~~--------------------------------- 135 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELK--MDIVGIVSNHP--DF--------------------------------- 135 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEESSS--TT---------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCC--cEEEEEEeCcH--HH---------------------------------
Confidence 5679999999988888888777664 3334 67666533221 10
Q ss_pred HHHHHhcCCceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
...++++| +++....... +. .+++++..+++++|++|+..-++
T Consensus 136 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 136 APLAAQHG--LPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp HHHHHHTT--CCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHcC--CCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchh
Confidence 12355677 7766543222 21 35789999999999999987654
No 98
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=62.33 E-value=15 Score=30.40 Aligned_cols=73 Identities=11% Similarity=-0.006 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHh-cCCCCCeehhhH
Q 030672 82 RAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFL-PNSQPSRLFGDL 159 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll-~~~~~pvL~~~~ 159 (173)
-+...++..| ++..-+ ...|.+.|++.++++++|+|.+...-...... +..+.+.+= ....+||++|+.
T Consensus 117 iva~~L~~~G----~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~-----m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 117 IVGVVLQCNN----YEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE-----MVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp HHHHHHHTTT----CEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH-----HHHHHHHHHHTTCCSCEEEEST
T ss_pred HHHHHHHHCC----CEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH-----HHHHHHHHHHcCCCCeEEEEcc
Confidence 3444566677 444333 34889999999999999999998765443332 223333332 234699999776
Q ss_pred HHHH
Q 030672 160 ILFQ 163 (173)
Q Consensus 160 ~~~~ 163 (173)
..-+
T Consensus 188 ~~~~ 191 (579)
T 3bul_A 188 TTSK 191 (579)
T ss_dssp TCCH
T ss_pred ccch
Confidence 4433
No 99
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=62.26 E-value=39 Score=23.90 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=27.9
Q ss_pred HHHHHhcCCceEEEEEEeeC--C---hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g--~---~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| +++....... + -.+++.+..++.++|++|+..-++
T Consensus 44 ~~~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~ 91 (216)
T 2ywr_A 44 IERCKKHN--VECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMR 91 (216)
T ss_dssp HHHHHHHT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCchh
Confidence 34555667 7665422221 1 136788899999999999976554
No 100
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=62.23 E-value=10 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=30.6
Q ss_pred CCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 2 NTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 2 ~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
+-..++|++++.++-.+.++.+....|.+..+ .+++++-.
T Consensus 16 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g--~~V~vv~T 55 (206)
T 1qzu_A 16 MERKFHVLVGVTGSVAALKLPLLVSKLLDIPG--LEVAVVTT 55 (206)
T ss_dssp CCSSEEEEEEECSSGGGGTHHHHHHHHC---C--EEEEEEEC
T ss_pred ccCCCEEEEEEeChHHHHHHHHHHHHHhcccC--CEEEEEEC
Confidence 34568999999999999999888888855257 88888743
No 101
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=62.14 E-value=46 Score=24.73 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++.....++-++..- ...+ ++|.++-...+ . +
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~--~---------------------------------~ 130 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLG--MDVVAVVSNHP--D---------------------------------L 130 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSC--CEEEEEEESSS--T---------------------------------T
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCC--cEEEEEEeCcH--H---------------------------------H
Confidence 4678999999988888777777653 3334 66666533221 1 0
Q ss_pred HHHHHhcCCceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
...++++| +++....... +. .+++++..++.++|++|+..-++
T Consensus 131 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 131 EPLAHWHK--IPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp HHHHHHTT--CCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHcC--CCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 12255677 7766543222 21 35789999999999999987654
No 102
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=61.84 E-value=37 Score=23.53 Aligned_cols=37 Identities=11% Similarity=-0.061 Sum_probs=28.6
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.+++++|++++...|.-++..+.. .+ .++.++|+...
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~----~g--~~v~~~~v~~~ 41 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKK----LG--YNPHLITINFG 41 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHH----TT--EEEEEEEEECS
T ss_pred cCCeEEEEEECcHHHHHHHHHHHH----cC--CCeEEEEEeCC
Confidence 357999999999998877766543 46 78999998654
No 103
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=61.41 E-value=45 Score=24.42 Aligned_cols=107 Identities=9% Similarity=0.013 Sum_probs=66.5
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
.=|+--+.......++.++++|+..+ ..| ..|. ..+....++--....+++... ......+..+...+
T Consensus 31 ANIACGfHAGDp~~M~~tv~lA~~~g--V~I-GAHP--gypDl~GFGRR~m~~s~~el~-------~~v~YQiGAL~a~a 98 (255)
T 1v6t_A 31 ANVACGWHAGDPLVMRKTVRLAKEND--VQV-GAHP--GYPDLMGFGRRYMKLTPEEAR-------NYILYQVGALYAFA 98 (255)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHTT--CEE-EEEC--CCSCTTTTTCSCCCCCHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhccccCCCHHHHHHHHHHHHHcC--CeE-ecCC--CCCcccCCCCCCCCCCHHHHH-------HHHHHHHHHHHHHH
Confidence 34555666667788999999999988 333 3344 333333333222233343222 23333455666677
Q ss_pred HhcCCceEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 88 RNFQNNIHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+..| .+++.+--.| ..++.|++.++..+.+|+++|..+.
T Consensus 99 ~~~G--~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~gs 147 (255)
T 1v6t_A 99 KAEG--LELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNS 147 (255)
T ss_dssp HHTT--CCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETTC
T ss_pred HHcC--CEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 7787 7777665433 3478999999999999999996653
No 104
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=60.14 E-value=43 Score=26.03 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|.+.. .+|+++|=..-. +...-+.+.+.+.++++. ++.
T Consensus 179 ~~~eRIar~AFe~A~~rr--kkVT~v~KaNvl--------------------------~~~glf~~~~~eva~eyp-dV~ 229 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRR--KKVTSVDKANVL--------------------------ACSVLWREVVEEVAKDYP-DVE 229 (375)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHHTTCT-TSE
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEECchhh--------------------------hhhhHHHHHHHHHHHHCC-Cce
Confidence 457899999999999886 788888753321 011234555666666665 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.-= ..+|.||+..
T Consensus 230 ~~~~~V-D~~am~lv~~P--~~FDViVt~N 256 (375)
T 3vmk_A 230 LEHIYI-DNATMQLLRRP--NEFDVMLCSN 256 (375)
T ss_dssp EEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EeeeeH-HHHHHHHHhCc--ccCcEEEECc
Confidence 765553 33344444433 3788887764
No 105
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=59.85 E-value=37 Score=23.97 Aligned_cols=81 Identities=6% Similarity=-0.010 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++...+|.-..... . +. ..+...+...+.+..+.+.++++| +.+-
T Consensus 74 ~~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~----------~-~~----~~~~~~~~~~~~l~~l~~~a~~~g--v~l~ 134 (254)
T 3ayv_A 74 TLRRLLFGLDRAAELG--ADRAVFHSGIPHGR----------T-PE----EALERALPLAEALGLVVRRARTLG--VRLL 134 (254)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEEEECCCCTTC----------C-HH----HHHHTHHHHHHHTHHHHHHHHHHT--CEEE
T ss_pred HHHHHHHHHHHHHHhC--CCEEEECCCCCccc----------c-cc----cHHHHHHHHHHHHHHHHHHHhhcC--CEEE
Confidence 3467788888999889 88877764322111 0 00 011222344556666667777788 7777
Q ss_pred EEEeeCChHHHHHHHHhhcC
Q 030672 98 RVVGCGDAKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~ 117 (173)
.+...+...+.+.+.+++.+
T Consensus 135 lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 135 LENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp EECSSCSSGGGTHHHHHHHT
T ss_pred EcCCCCCCHHHHHHHHHhcC
Confidence 77665534445555555433
No 106
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=59.70 E-value=16 Score=23.86 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=27.4
Q ss_pred CCCCCcEEEEEecCChH----HHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 1 MNTNERRVVVAVDESEE----SMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~----s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
|+..||++++.+..++. +..++++|...+.. + ..+.++...+
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~--~~v~Vff~~D 46 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-D--QDVCVLFLDD 46 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-C--CEEEEEECGG
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-C--CCEEEEEEhH
Confidence 77788999999977665 56788888877654 4 5776665544
No 107
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=59.70 E-value=45 Score=25.82 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
...+++.+++|+++|++.. .+|+++|=..-.. ...-+.+.+.+.++++. ++
T Consensus 169 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaNvlk--------------------------~~~lf~~~~~eva~eyp-dI 219 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRR--RKVTSIDKANVLQ--------------------------SSILWREIVNDVAKTYP-DV 219 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTCH--------------------------HHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEECCcccc--------------------------cchhHHHHHHHHHHHCC-Cc
Confidence 3457899999999999886 7888887644220 01124455555666665 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++...+ ++..-.++.-=+ .+|.||+..
T Consensus 220 ~~~~~~v-D~~~m~lv~~P~--~FDVivt~N 247 (363)
T 1cnz_A 220 ELAHMYI-DNATMQLIKDPS--QFDVLLCSN 247 (363)
T ss_dssp EEEEEEH-HHHHHHHHHCGG--GCSEEEECH
T ss_pred eEeeeeH-HHHHHHHhhCcc--cceEEEECC
Confidence 7765443 343444444433 778777764
No 108
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=59.61 E-value=10 Score=26.21 Aligned_cols=36 Identities=6% Similarity=0.107 Sum_probs=30.1
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v 43 (173)
++||++++.++-.+.++++....+.+. + .+++++-.
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~T 37 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVELKQH-F--DEVNILFS 37 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHHTTT-S--SCEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEc
Confidence 479999999999999999998888554 6 88888754
No 109
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=58.63 E-value=51 Score=24.11 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=62.0
Q ss_pred EEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030672 10 VAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRN 89 (173)
Q Consensus 10 v~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 89 (173)
|+--+.......++.++++|+..+ ..| ..|. ..+....++--....+++... ......+..+...++.
T Consensus 28 IACGfHAGDp~~M~~Tv~lA~~~g--V~I-GAHP--gypDl~GFGRR~m~~s~~el~-------~~v~YQiGAL~a~a~~ 95 (252)
T 1xw8_A 28 IACGFHAGDAQIMQACVREAIKNG--VAI-GAHP--SFPDRENFGRSAMQLPPETVY-------AQTLYQIGALATIARA 95 (252)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHT--CEE-EEEC--CCC-------CCCCCCHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCHHHHHHHHHHHHHcC--Cee-ecCC--CCCcccCCCCCCCCCCHHHHH-------HHHHHHHHHHHHHHHH
Confidence 455555566778889999999888 333 3343 333333333222233333222 2333345566667777
Q ss_pred cCCceEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 90 FQNNIHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 90 ~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.| .++..+--.| ..++.|++.++..+.+|+++|..+.
T Consensus 96 ~G--~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~gs 142 (252)
T 1xw8_A 96 QG--GVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGS 142 (252)
T ss_dssp TT--CCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETTS
T ss_pred cC--CEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCCh
Confidence 87 7776654432 4478999999999999999996553
No 110
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=58.10 E-value=46 Score=23.43 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=50.3
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
+|+||.|.+.++.....++-.++.- ...+ .++.+|-. ..+.. ..
T Consensus 2 ~m~ki~vl~sG~g~~~~~~l~~l~~-~~l~--~~I~~Vit--~~~~~-------------------------------~v 45 (212)
T 3av3_A 2 HMKRLAVFASGSGTNFQAIVDAAKR-GDLP--ARVALLVC--DRPGA-------------------------------KV 45 (212)
T ss_dssp CCEEEEEECCSSCHHHHHHHHHHHT-TCCC--EEEEEEEE--SSTTC-------------------------------HH
T ss_pred CCcEEEEEEECCcHHHHHHHHHHHh-CCCC--CeEEEEEe--CCCCc-------------------------------HH
Confidence 4679999988877654444334331 2223 56655533 21110 12
Q ss_pred HHHHHhcCCceEEEEEEeeC--Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG--DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g--~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+++.| +++....... +. .+++.+..++.++|++|+..-++
T Consensus 46 ~~~A~~~g--Ip~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 46 IERAAREN--VPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp HHHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCS
T ss_pred HHHHHHcC--CCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhhh
Confidence 34556677 7765432221 21 35788999999999999986554
No 111
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=57.95 E-value=52 Score=25.40 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
...+++.+++|+++|.+.. .+|+++|=..-.. ...-+.+.+.+.++++. ++
T Consensus 164 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaNvlk--------------------------~~~lf~~~~~eva~eyp-dI 214 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRR--KQLCSVDKANVLE--------------------------TTRLWREVVTEVARDYP-DV 214 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTCH--------------------------HHHHHHHHHHHHGGGCT-TS
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEECCcccc--------------------------cchhHHHHHHHHHHHCC-Cc
Confidence 3457899999999999886 7888887644210 11234555566666665 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++... .++..-.++.-=+ .+|.||+..
T Consensus 215 ~~~~~~-vD~~~mqlv~~P~--~FDVivt~N 242 (358)
T 1a05_A 215 RLSHMY-VDNAAMQLIRAPA--QFDVLLTGN 242 (358)
T ss_dssp EEEEEE-HHHHHHHHHHCGG--GCSEEEECH
T ss_pred eEEeee-HHHHHHHHHhCCC--cccEEEecC
Confidence 776544 3344444444433 778777764
No 112
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=57.46 E-value=52 Score=25.42 Aligned_cols=78 Identities=12% Similarity=0.045 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|.+.. .+|+++|=..-.. ...-+.+.+.+.++++. ++.
T Consensus 163 ~~~eRIar~AFe~A~~rr--kkVt~v~KaNvlk--------------------------~~~lf~~~~~eva~eyp-dI~ 213 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRR--KHVVSVDKANVLE--------------------------VGEFWRKTVEEVGRGYP-DVA 213 (359)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTTCH--------------------------HHHHHHHHHHHHHTTCT-TSE
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEECCcccc--------------------------ccHHHHHHHHHHHHHCC-cEE
Confidence 457899999999999886 7888887644221 01124455555666664 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.-= ..+|.||...
T Consensus 214 ~~~~~V-D~~~mqlv~~P--~~FDVivt~N 240 (359)
T 2y3z_A 214 LEHQYV-DAMAMHLVRSP--ARFDVVVTGN 240 (359)
T ss_dssp EEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EEeeEH-HHHHHHHhhCc--ccccEEEEcC
Confidence 765543 33344444433 3778888764
No 113
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=57.46 E-value=10 Score=26.74 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCCCCcEEEEEecCChHHH-HHHHHHHhhcCCCCCCCeEEEEEE
Q 030672 1 MNTNERRVVVAVDESEESM-HALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~-~al~~A~~la~~~~~~~~l~~l~v 43 (173)
|.-..+||++++.++-.+. ++++..-.|.+. | .+++++-.
T Consensus 3 m~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~-g--~eV~vv~T 43 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGSHCTYHEVLPQMERLVEL-G--AKVTPFVT 43 (201)
T ss_dssp CCCTTCEEEEECCSCGGGGGGTHHHHHHHHHT-T--CEEEEECS
T ss_pred CCcCCCEEEEEEEChHHHHHHHHHHHHHHhhC-C--CEEEEEEC
Confidence 6667789999999998888 888888887553 6 78888744
No 114
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=56.96 E-value=29 Score=25.81 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=53.0
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++.....++-++..- ...+ ++|.++-...+.. +
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~Visn~~~a----------------------------------~ 129 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELD--MEVVGIISNHPRE----------------------------------A 129 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEESSCGG----------------------------------G
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCC--eEEEEEEeCChHH----------------------------------H
Confidence 5678999999988887777777654 3334 6666653322210 1
Q ss_pred HHHHHhcCCceEEEEEEeeC-C---hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG-D---AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g-~---~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++....... + ..+++++..+++++|++|+..-.+
T Consensus 130 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym~ 176 (287)
T 3nrb_A 130 LSVSLVGD--IPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYMQ 176 (287)
T ss_dssp CCCCCCTT--SCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred HHHHHHcC--CCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhhh
Confidence 12344566 6655432221 1 135688888999999999976554
No 115
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=56.69 E-value=72 Score=25.22 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=28.5
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.++++|++++.-.|.-++.++.+. | .+++.+++.-.
T Consensus 14 ~~KVVVA~SGGlDSSv~a~~Lke~----G--~eViavt~d~G 49 (421)
T 1vl2_A 14 KEKVVLAYSGGLDTSVILKWLCEK----G--FDVIAYVANVG 49 (421)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEESS
T ss_pred cCCEEEEeCCcHHHHHHHHHHHHC----C--CeEEEEEEEcC
Confidence 478999999988888887777553 6 79999988643
No 116
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=56.39 E-value=53 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
...+++|.+++ -.|.-++..+.+ .| .+++.+|..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll~~----~G--~~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLMMK----RG--VEVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHH----BT--CEEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHHHHHh----CC--CeEEEEEEE
Confidence 34689999999 887655544443 47 899999986
No 117
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=55.60 E-value=55 Score=23.60 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=53.7
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
.|+++.+++...|.-++..+.+ .| .++..|+...+..... .. . ...-.+.++.
T Consensus 5 MKvvvl~SGGkDSs~al~~l~~----~G--~eV~~L~~~~~~~~~s-~~-----~---------------h~~~~e~a~~ 57 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAIK----NR--FSVKFLVTMVSENEES-YM-----Y---------------HTINANLTDL 57 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TT--CEEEEEEEEECC-----------------------------CCSSSHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHH----cC--CeEEEEEEEcCCCCCc-cc-----c---------------CCccHHHHHH
Confidence 5799999999988877666554 46 6777665433221000 00 0 0001233444
Q ss_pred HHHhcCCceEEEEEEeeCC---hHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 86 VYRNFQNNIHVKRVVGCGD---AKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~---~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.++..| ++....-..|. ..+.+.+..++.+++-+|.|.--..
T Consensus 58 ~A~~LG--Ipl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi~s~ 102 (237)
T 3rjz_A 58 QARALG--IPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGALASK 102 (237)
T ss_dssp HHHHHT--CCEEEEEC------CHHHHHHHHTTSCCSEEECC---CC
T ss_pred HHHHcC--CCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCcchH
Confidence 556667 77766655553 4567777888889999999976543
No 118
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=54.95 E-value=53 Score=23.17 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=53.8
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAE 84 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (173)
.+||.|-++++.....++-.++.- ...+ ++|.+|-...+ ... . .
T Consensus 7 ~~ri~vl~SG~gsnl~all~~~~~-~~l~--~~I~~Visn~~--~a~---------------------------~----l 50 (209)
T 4ds3_A 7 RNRVVIFISGGGSNMEALIRAAQA-PGFP--AEIVAVFSDKA--EAG---------------------------G----L 50 (209)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHTS-TTCS--EEEEEEEESCT--TCT---------------------------H----H
T ss_pred CccEEEEEECCcHHHHHHHHHHHc-CCCC--cEEEEEEECCc--ccH---------------------------H----H
Confidence 458999999988877777766642 2233 56655533221 110 0 1
Q ss_pred HHHHhcCCceEEEEEEeeC--Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 85 AVYRNFQNNIHVKRVVGCG--DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g--~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.++++| +++...-... +. .+++.+..++.++|++|+..-++
T Consensus 51 ~~A~~~g--Ip~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 51 AKAEAAG--IATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp HHHHHTT--CCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHcC--CCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4566677 7765543322 21 36889999999999999987554
No 119
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=54.82 E-value=61 Score=25.47 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|.... .+|+++|=..-. +...-+.+.+.+..+++. ++.
T Consensus 207 ~~~eRIar~AFe~A~~rr--kkVT~v~KaNVl--------------------------k~sglf~~~~~eva~eYP-dV~ 257 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRR--GKLCSVDKANVL--------------------------EASILWRKRVTALASEYP-DVE 257 (405)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHGGGST-TSE
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEECchhh--------------------------ccccHHHHHHHHHHhHCC-CCe
Confidence 457899999999998766 788888743321 011234555556666665 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.-= ..+|.||+..
T Consensus 258 ~~~~~V-D~~amqLV~~P--~~FDViVt~N 284 (405)
T 3r8w_A 258 LSHMYV-DNAAMQLVRDP--KQFDTIVTNN 284 (405)
T ss_dssp EEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EEeeeH-HHHHHHHHhCh--hhCcEEeecc
Confidence 765543 33344444333 3788887654
No 120
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=54.38 E-value=14 Score=27.25 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=35.2
Q ss_pred CChHHHHHHHHhhcCCCEEEEecCCCC---hhhhhhhhcccchHHHHhcCC---CCCeehhhHH
Q 030672 103 GDAKDVICGTVEKLEADTLVMGSHGYG---FIKRYKQLILAALSFQFLPNS---QPSRLFGDLI 160 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G~~~~~---~~~~~~~~~~gs~~~~ll~~~---~~pvL~~~~~ 160 (173)
..|.+.|++.++++++|+|.+...-.. .... +..+.+.+-... .+||++|...
T Consensus 166 ~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~-----~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 166 QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN-----MTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH-----HHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHH-----HHHHHHHHHhcCCCCCCEEEEECCc
Confidence 368999999999999999999876544 3332 333344442222 2888887653
No 121
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=54.28 E-value=59 Score=25.17 Aligned_cols=79 Identities=8% Similarity=-0.002 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
...+++.+++|+++|++.. .+|+++|=..-.. ...-+.+.+.+.++++. ++
T Consensus 173 r~~~eRIar~AFe~A~~rr--kkVt~v~KaNvlk--------------------------t~glf~~~~~eva~eyp-dV 223 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRR--KKVTSVDKANVLY--------------------------SSMLWRKVVNEVAREYP-DV 223 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTTCH--------------------------HHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEECCcccc--------------------------cchHHHHHHHHHHHHCC-Cc
Confidence 3457899999999999886 7888887544321 11124555566666664 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++...+ ++..-.++.-=+ .+|.||...
T Consensus 224 ~~~~~~V-D~~~mqlv~~P~--~FDVivt~N 251 (366)
T 1vlc_A 224 ELTHIYV-DNAAMQLILKPS--QFDVILTTN 251 (366)
T ss_dssp EEEEEEH-HHHHHHHHHCGG--GCSEEEECH
T ss_pred eEEeeeH-HHHHHHHhhCcc--cceEEEEcc
Confidence 7666544 333444444434 778887764
No 122
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=53.65 E-value=21 Score=24.49 Aligned_cols=112 Identities=7% Similarity=0.005 Sum_probs=63.4
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
+||++++.++-.+.++++..-.|.+ .+ .+++++-...-..+. .++ .+ ..
T Consensus 6 k~IllgvTGs~aa~k~~~ll~~L~~-~g--~~V~vv~T~~A~~fi----------~~~---------------~l---~~ 54 (175)
T 3qjg_A 6 ENVLICLCGSVNSINISHYIIELKS-KF--DEVNVIASTNGRKFI----------NGE---------------IL---KQ 54 (175)
T ss_dssp CEEEEEECSSGGGGGHHHHHHHHTT-TC--SEEEEEECTGGGGGS----------CHH---------------HH---HH
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHH-CC--CEEEEEECcCHHHHh----------hHH---------------HH---HH
Confidence 8999999999999999988888755 46 888877432211110 000 01 11
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
. . + ++.... .++.-.....++ .+|++|+..-..+.+.+...-+-.+....++....+|+++.+
T Consensus 55 l----~-~-~v~~~~--~~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 55 F----C-D-NYYDEF--EDPFLNHVDIAN--KHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp H----C-S-CEECTT--TCTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred h----c-C-CEEecC--CCCccccccccc--hhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 1 1 1 111111 112223445555 789999987665555553322333444456666789998843
No 123
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=52.70 E-value=31 Score=29.51 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~ 158 (173)
.+.++|++.+.++++|+|++.+.-.+.... +-.+.+.|-... .++|++|+
T Consensus 642 v~~eeiv~aA~e~~adiVglSsl~~~~~~~-----~~~vi~~Lr~~G~~dv~VivGG 693 (762)
T 2xij_A 642 QTPREVAQQAVDADVHAVGVSTLAAGHKTL-----VPELIKELNSLGRPDILVMCGG 693 (762)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECSSCHHHH-----HHHHHHHHHHTTCTTSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecHHHHHH-----HHHHHHHHHhcCCCCCEEEEeC
Confidence 568999999999999999998765444332 223333332222 47899885
No 124
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=52.69 E-value=54 Score=25.33 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|++.. .+|+++|=..-. ....-+.+.+.+.++++. ++.
T Consensus 167 ~~~eRIar~AFe~A~~rr--kkVT~v~KaNvl--------------------------~t~glf~~~~~eva~eyp-dV~ 217 (361)
T 3udu_A 167 KEIERIARIAFESARIRK--KKVHLIDKANVL--------------------------ASSILWREVVANVAKDYQ-DIN 217 (361)
T ss_dssp HHHHHHHHHHHHHHHHTT--SEEEEEECTTTC--------------------------HHHHHHHHHHHHHGGGCT-TSE
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEECchhh--------------------------ccchHHHHHHHHHHHHCC-CCe
Confidence 457899999999998876 788888753321 001224455566666665 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.- -..+|.||+..
T Consensus 218 ~~~~~V-D~~am~lv~~--P~~FDViVt~N 244 (361)
T 3udu_A 218 LEYMYV-DNAAMQIVKN--PSIFDVMLCSN 244 (361)
T ss_dssp EEEEEH-HHHHHHHHHC--GGGCSEEEECH
T ss_pred EEeeeH-HHHHHHHHhC--cccCcEEEecc
Confidence 765543 3333344433 33688777764
No 125
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=52.44 E-value=62 Score=23.24 Aligned_cols=34 Identities=6% Similarity=0.004 Sum_probs=26.4
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
.+|+|++++...|.-++..+.... .++.++++..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~------~~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS------TTCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC------CCCeEEEecC
Confidence 489999999999998888887773 2466777644
No 126
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=52.28 E-value=63 Score=24.20 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+.. +..+.| .+.|++.++|-+.+-...... -.+. =..-..|...++.|
T Consensus 69 ~vi~~~~~~~~g---rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l-----~~~f~~va~a~~lP 139 (314)
T 3d0c_A 69 QVATRVTELVNG---RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGA-----VEYYRNIIEALDAP 139 (314)
T ss_dssp HHHHHHHHHHTT---SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHH-----HHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhCC---CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHhCCCC
Confidence 344444444432 3677776666 766655 567899999999888765432 2221 11224566677888
Q ss_pred eeh
Q 030672 154 RLF 156 (173)
Q Consensus 154 vL~ 156 (173)
|++
T Consensus 140 iil 142 (314)
T 3d0c_A 140 SII 142 (314)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 127
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=52.12 E-value=44 Score=24.39 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=63.6
Q ss_pred EEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 8 VVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY 87 (173)
Q Consensus 8 ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (173)
.=|+--+.......++.++++|+..+ ..| ..|. ..+....++--....+++.... .....+..+...+
T Consensus 31 ANIACGfHAGDp~~M~~tv~lA~~~g--V~I-GAHP--gypDl~GFGRR~m~~s~~el~~-------~v~YQiGAL~a~a 98 (250)
T 2dfa_A 31 ANLACGFHGGSPGRILEAVRLAKAHG--VAV-GAHP--GFPDLVGFGRREMALSPEEVYA-------DVLYQIGALSAFL 98 (250)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHHHTT--CEE-EEEC--CCSCTTTTTCSCCCCCHHHHHH-------HHHHHHHHHHHHH
T ss_pred hhhhccccCCCHHHHHHHHHHHHHcC--CeE-ecCC--CCCcccCCCCCCCCCCHHHHHH-------HHHHHHHHHHHHH
Confidence 34555666667788999999999988 333 3344 3333333332222333433322 2333455556666
Q ss_pred HhcCCceEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 88 RNFQNNIHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 88 ~~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+..| .+++.+--.| ..++.|++.++..+.+|+++|..+
T Consensus 99 ~~~G--~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g 146 (250)
T 2dfa_A 99 KAEG--LPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPG 146 (250)
T ss_dssp HHTT--CCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHcC--CEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 6677 5555443322 447899999999999999999655
No 128
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=52.03 E-value=27 Score=29.71 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCC--CCCeehhh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNS--QPSRLFGD 158 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~--~~pvL~~~ 158 (173)
.+.+++++.++++++|+|++.+.-.+.... +-.+.+.|-... .++|++|+
T Consensus 634 v~~eeiv~aA~e~~adiVglSsl~~~~~~~-----~~~vi~~L~~~G~~~i~VivGG 685 (727)
T 1req_A 634 QTPEETARQAVEADVHVVGVSSLAGGHLTL-----VPALRKELDKLGRPDILITVGG 685 (727)
T ss_dssp BCHHHHHHHHHHTTCSEEEEEECSSCHHHH-----HHHHHHHHHHTTCTTSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecHhHHHH-----HHHHHHHHHhcCCCCCEEEEcC
Confidence 567999999999999999998865444332 233333332221 47899985
No 129
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=52.00 E-value=67 Score=23.47 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=63.0
Q ss_pred EEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 9 VVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYR 88 (173)
Q Consensus 9 Lv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 88 (173)
=|+--+.......++.++++|+..+ ..| ..|. ..+....++--....+++.... .....+..+...++
T Consensus 38 NIACGfHAGDp~~M~~Tv~lA~~~g--V~I-GAHP--gypDl~GFGRR~m~~s~~el~~-------~v~YQiGAL~a~a~ 105 (252)
T 2x5e_A 38 NLACGFHAGDPLTMRRAVELAVRHG--VSI-GAHP--AYPDLSGFGRRSLACSAEEVHA-------MVLYQIGALDAFCR 105 (252)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHTT--CEE-EEEC--CCSCTTTTTCSCCCCCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhccccCCCHHHHHHHHHHHHHcC--Cee-ecCC--CCCcccCCCCCCCCCCHHHHHH-------HHHHHHHHHHHHHH
Confidence 3455555566778899999999988 333 3344 3333333332222333433322 23334555666677
Q ss_pred hcCCceEEEEEEeeC----------ChHHHHHHHHhhcCCCEEEEecC
Q 030672 89 NFQNNIHVKRVVGCG----------DAKDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g----------~~~~~I~~~a~~~~~dllV~G~~ 126 (173)
..| .+++.+--.| ..++.|++.++..+.+|+++|-.
T Consensus 106 ~~G--~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 151 (252)
T 2x5e_A 106 SLG--TQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA 151 (252)
T ss_dssp HTT--CCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HcC--CEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 777 6665554432 44789999999999999999965
No 130
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=51.74 E-value=48 Score=24.64 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=53.7
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRA 83 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (173)
.++||.|-++++.....++-++..- ...+ ++|.++-...++ ..
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~Visn~p~-~~--------------------------------- 130 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLH--MIPTAIVSNHPR-ET--------------------------------- 130 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSC--EEEEEEEESSCG-GG---------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCC--eEEEEEEcCCCh-hH---------------------------------
Confidence 5789999999998888888777653 3333 566555322211 10
Q ss_pred HHHHHhcCCceEEEEEEeeC-Ch---HHHHHHHHhhcCCCEEEEecCCC
Q 030672 84 EAVYRNFQNNIHVKRVVGCG-DA---KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g-~~---~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.++++| +++....... +. .+++++..+++++|++|+..-.+
T Consensus 131 ~~~A~~~g--Ip~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~ 177 (288)
T 3obi_A 131 FSGFDFGD--IPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQ 177 (288)
T ss_dssp SCCTTTTT--CCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCCS
T ss_pred HHHHHHcC--CCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhhh
Confidence 12244566 7665543222 11 35788899999999999986554
No 131
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=51.42 E-value=66 Score=23.75 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+-...... -.. +-..-..+...++.
T Consensus 57 ~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~ia~a~~l 128 (292)
T 2ojp_A 57 ADVVMMTLDLADG---RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEG-----LYQHFKAIAEHTDL 128 (292)
T ss_dssp HHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHH-----HHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhcCC
Confidence 3445555544432 25555555444555554 566889999988887765432 222 11223567788899
Q ss_pred CeehhhHH
Q 030672 153 SRLFGDLI 160 (173)
Q Consensus 153 pvL~~~~~ 160 (173)
||++-..+
T Consensus 129 PiilYn~P 136 (292)
T 2ojp_A 129 PQILYNVP 136 (292)
T ss_dssp CEEEECCH
T ss_pred CEEEEeCc
Confidence 99884433
No 132
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=51.31 E-value=53 Score=26.00 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHH---HhhcCC-CEEEEecCCCChhhh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGT---VEKLEA-DTLVMGSHGYGFIKR 133 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~---a~~~~~-dllV~G~~~~~~~~~ 133 (173)
..+.+...++.+| ++++..+..- ...+.+.++ +++.++ +.+|.++.+.+.+.+
T Consensus 280 ~~~~a~~~l~~~g--i~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg 337 (425)
T 2h31_A 280 HCEKIKKACGNFG--IPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP 337 (425)
T ss_dssp HHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH
T ss_pred HHHHHHHHHHHcC--CceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh
Confidence 4556666777888 8888887763 444444444 455678 688888877777776
No 133
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=50.78 E-value=68 Score=23.19 Aligned_cols=67 Identities=9% Similarity=-0.074 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+++-+.+.+++.| +.+......+++.. ..++.....++|-||+.......... .-+.+....+||++
T Consensus 20 ~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~---------~~~~~~~~~iPvV~ 88 (313)
T 3m9w_A 20 DRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN---------VVKEAKQEGIKVLA 88 (313)
T ss_dssp HHHHHHHHHHHTS--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH---------HHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH---------HHHHHHHCCCeEEE
Confidence 4555555666677 77666555555543 45566667799999987654433222 12334455666665
No 134
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=50.68 E-value=25 Score=27.32 Aligned_cols=127 Identities=15% Similarity=0.085 Sum_probs=61.9
Q ss_pred cEEEEEecC-ChH-HHHHHHHHHhhcCCCCC--CCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDE-SEE-SMHALSWCLNNLFSPDT--NNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMN 81 (173)
Q Consensus 6 ~~ILv~vd~-s~~-s~~al~~A~~la~~~~~--~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (173)
++++|.+.. |-+ -+.+++||-.+...... +.-..++.++...+ .+..++-+....++....++- +..-+++.
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeKP-RTs~GwKGli~dP~ld~Sf~g---~~GL~i~r 142 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKP-RTTVGWKGLINDPDVNNTFNI---NKGLQSAR 142 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCC-CSSSSCCCTTTCTTSSSCCCH---HHHHHHHH
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccc-cCCccccccccCCCcCCCcCH---HHHHHHHH
Confidence 455555544 222 35677787777554220 02334556655554 333333332222221111110 22222333
Q ss_pred HHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEE---EEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 82 RAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTL---VMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dll---V~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
++...+.+.| +++-+.+..-...+.+ +|+| .+|++.--. . .-..+...+.+||.|
T Consensus 143 ~ll~~v~e~G--lPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es--q--------~hre~Asgl~~PVg~ 200 (370)
T 1of8_A 143 QLFVNLTNIG--LPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES--Q--------LHRELASGLSFPVGF 200 (370)
T ss_dssp HHHHHHHTTT--CCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC--H--------HHHHHHHTCSSCEEE
T ss_pred HHHHHHHHcC--CceEEeecCcccHHHH--------HHHHhhccccCccccc--H--------HHHHHHhcCCCeEEE
Confidence 3333335788 9999998887443333 6777 567654211 1 123455678899987
No 135
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=50.49 E-value=71 Score=23.61 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+...+..+.| .+.|++.++|-+.+-...... -... =..-..|...++.
T Consensus 56 ~~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l-----~~~f~~va~a~~l 127 (294)
T 2ehh_A 56 EKVIEFAVKRAAG---RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGL-----YEHFKTVAQEVDI 127 (294)
T ss_dssp HHHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHhcCC
Confidence 3344555544432 26665555544565555 567889999999887765422 2221 1223456677789
Q ss_pred CeehhhH
Q 030672 153 SRLFGDL 159 (173)
Q Consensus 153 pvL~~~~ 159 (173)
||++-..
T Consensus 128 PiilYn~ 134 (294)
T 2ehh_A 128 PIIIYNI 134 (294)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9988443
No 136
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=50.28 E-value=64 Score=22.72 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=51.7
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEA 85 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 85 (173)
+||.|-++++.....++-.++.- ...+ .++.+|-..++. . ...+
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~-~~~~--~~i~~Vis~~~~--~-------------------------------~~~~ 44 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKT-NKIK--GTVRAVFSNKAD--A-------------------------------FGLE 44 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHT-TSSS--SEEEEEEESCTT--C-------------------------------HHHH
T ss_pred CEEEEEEECCcHHHHHHHHHHHc-CCCC--ceEEEEEeCCCc--h-------------------------------HHHH
Confidence 37888888877766666665542 2234 566665443221 0 0135
Q ss_pred HHHhcCCceEEEEEEeeC--C---hHHHHHHHHhhcCCCEEEEecCCC
Q 030672 86 VYRNFQNNIHVKRVVGCG--D---AKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g--~---~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+++.| +++...-... + ..+++.+..++.++|++|+..-++
T Consensus 45 ~A~~~g--Ip~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~ 90 (212)
T 1jkx_A 45 RARQAG--IATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMR 90 (212)
T ss_dssp HHHHTT--CEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCCS
T ss_pred HHHHcC--CcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChhh
Confidence 556677 7765432221 1 136788999999999999986553
No 137
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=50.05 E-value=77 Score=23.61 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-.-+...+..+.| .+.|++.++|-+.+-...... -.. +=..-..|...++.
T Consensus 68 ~~vi~~~~~~~~g---rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~l 139 (306)
T 1o5k_A 68 EKLVSRTLEIVDG---KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEG-----LYQHYKYISERTDL 139 (306)
T ss_dssp HHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH-----HHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhCC---CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhCCC
Confidence 3344555544432 25665555544555554 567889999999887765432 222 11223567788899
Q ss_pred CeehhhH
Q 030672 153 SRLFGDL 159 (173)
Q Consensus 153 pvL~~~~ 159 (173)
||++-..
T Consensus 140 PiilYn~ 146 (306)
T 1o5k_A 140 GIVVYNV 146 (306)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9988443
No 138
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=49.89 E-value=76 Score=24.82 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|++.. .+|+++|=..-. . ...-+.+.+.+.++++. ++.
T Consensus 186 ~~~eRIar~AFe~A~~rr--kkVT~v~KaNVl--~------------------------t~glfr~~~~eva~eYP-dV~ 236 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRK--KKVTSVDKANVL--E------------------------SSRLWREVAEEVAKEYP-DVE 236 (390)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTTC--H------------------------HHHHHHHHHHHHHTTCT-TSE
T ss_pred HHHhHHHHHHHHHHHHcC--CceEEEECCccc--c------------------------cchHHHHHHHHHHhHCC-CCe
Confidence 467899999999999886 798888753321 0 01124445555556664 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.-= ..+|.||+..
T Consensus 237 ~~~~~V-D~~amqLV~~P--~~FDViVt~N 263 (390)
T 3u1h_A 237 LEHMLV-DNAAMQLIRNP--RQFDVIVTEN 263 (390)
T ss_dssp EEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EEeeeH-HHHHHHHHhCc--ccCcEEEecc
Confidence 765544 33334444433 3788777754
No 139
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=49.56 E-value=56 Score=23.23 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEe
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVK 44 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~ 44 (173)
|+. +.++.+++|+..- ..+++.+- ..+ ..+..+++-
T Consensus 9 m~~-~~~lilAlD~~~~-~~a~~~v~----~~~--~~v~~~Kvg 44 (228)
T 3m47_A 9 MDV-MNRLILAMDLMNR-DDALRVTG----EVR--EYIDTVKIG 44 (228)
T ss_dssp CCC-GGGEEEECCCCSH-HHHHHHHH----TTT--TTCSEEEEE
T ss_pred hhc-CCCeEEEeCCCCH-HHHHHHHH----HcC--CcccEEEEc
Confidence 554 6789999999764 44555444 444 456667773
No 140
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=49.10 E-value=15 Score=26.01 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCChHHHH-HHHHHHhhcCCCCCCCeEEEEEE
Q 030672 1 MNTNERRVVVAVDESEESMH-ALSWCLNNLFSPDTNNTLVLLYV 43 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~-al~~A~~la~~~~~~~~l~~l~v 43 (173)
|.-..+||++++.+|-...+ +++..-.|.+ .| .+++++-.
T Consensus 1 m~l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g--~eV~vv~T 41 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EG--AEVRPVVS 41 (207)
T ss_dssp -CCTTCEEEEEECSCGGGGTTSHHHHHHHHH-TT--CEEEEEEC
T ss_pred CCCCCCEEEEEEEChHHHHHHHHHHHHHHHh-CC--CEEEEEEe
Confidence 55567899999999987776 7777777755 36 88887743
No 141
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=48.34 E-value=29 Score=24.30 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=28.7
Q ss_pred cEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 6 RRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
+||++++.++-.+.++++..-.|.+..+ .+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g--~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPN--VETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTT--CEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccC--CEEEEEE
Confidence 3799999999999999999888865436 7888774
No 142
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=48.11 E-value=82 Score=23.38 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-.-+...+..+.| .+.|++.++|-+.+-...... -.. +=..-..|...++.
T Consensus 68 ~~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~l 139 (301)
T 1xky_A 68 VALYRHVVSVVDK---RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEG-----MYQHFKAIAESTPL 139 (301)
T ss_dssp HHHHHHHHHHHTT---SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH-----HHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhCC---CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHH-----HHHHHHHHHHhcCC
Confidence 3344544444432 25665555444555554 567889999998887765422 222 11223567778899
Q ss_pred CeehhhH
Q 030672 153 SRLFGDL 159 (173)
Q Consensus 153 pvL~~~~ 159 (173)
||++-..
T Consensus 140 PiilYn~ 146 (301)
T 1xky_A 140 PVMLYNV 146 (301)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9988443
No 143
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=47.85 E-value=6.1 Score=26.48 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.3
Q ss_pred ChHHHHHHHHhhcCCCEEEEec
Q 030672 104 DAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~ 125 (173)
...+.|.+.+++++++.+|+|-
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGl 63 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGF 63 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEee
Confidence 4578899999999999999994
No 144
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=47.61 E-value=40 Score=25.73 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
...+++.+++|+++|.+.+. .+|+++|=....... ..-+.+.+.+.++++. ++
T Consensus 143 ~~~~eRiar~AF~~A~~r~r-kkvt~v~KaNvlk~t-------------------------~glf~~~~~eva~eyp-~I 195 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPR-KTLHIAHKANVLPLT-------------------------QGLFLDTVKEVAKDFP-LV 195 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTT-CEEEEEECTTTCTTH-------------------------HHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHhcCC-CeEEEEecCccchhh-------------------------hHHHHHHHHHHHHHCC-Cc
Confidence 34578999999999998842 678888754432211 1123445555555664 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++...+ ++..-.++.-= ..+|.||...
T Consensus 196 ~~~~~~v-D~~~m~lv~~P--~~FDVivt~N 223 (333)
T 1x0l_A 196 NVQDIIV-DNCAMQLVMRP--ERFDVIVTTN 223 (333)
T ss_dssp EEEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred eEEEEEH-HHHHHHHhhCc--ccceEEEEcC
Confidence 7766553 23333333333 3678777654
No 145
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=47.44 E-value=82 Score=23.41 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+-...... -... -..-..|...++.|
T Consensus 73 ~v~~~~~~~~~g---rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l-----~~~f~~ia~a~~lP 144 (304)
T 3cpr_A 73 ELLKAVREEVGD---RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGL-----LAHFGAIAAATEVP 144 (304)
T ss_dssp HHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhCC---CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHhcCCC
Confidence 344444444332 26665555544555554 567889999988887665422 2221 12234566778899
Q ss_pred eehhhH
Q 030672 154 RLFGDL 159 (173)
Q Consensus 154 vL~~~~ 159 (173)
|++=..
T Consensus 145 iilYn~ 150 (304)
T 3cpr_A 145 ICLYDI 150 (304)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988443
No 146
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=47.09 E-value=85 Score=23.27 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.... +++-..+...+..+.| .+.+++.++|-+.+-...... -.. +=..-..|...++.
T Consensus 63 ~~v~~~~~~~~~g~r--vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~l 135 (301)
T 3m5v_A 63 RTCIEIAVETCKGTK--VKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQG-----LYEHYKAIAQSVDI 135 (301)
T ss_dssp HHHHHHHHHHHTTSS--CEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH-----HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCCCC--CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH-----HHHHHHHHHHhCCC
Confidence 344555555543312 5665555444555444 467889999999998765432 222 11223566777799
Q ss_pred CeehhhHH
Q 030672 153 SRLFGDLI 160 (173)
Q Consensus 153 pvL~~~~~ 160 (173)
||++-..+
T Consensus 136 PiilYn~P 143 (301)
T 3m5v_A 136 PVLLYNVP 143 (301)
T ss_dssp CEEEEECH
T ss_pred CEEEEeCc
Confidence 99884433
No 147
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=46.85 E-value=61 Score=24.79 Aligned_cols=80 Identities=10% Similarity=-0.013 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNI 94 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 94 (173)
...+++.+++|+++|.+.. .+|+++|=..-.. ....-+.+.+.+.++++. ++
T Consensus 153 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaNvlk-------------------------~s~glf~~~~~eva~eyp-~i 204 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRR--KHLTLVHKTNVLT-------------------------FAGGLWLRTVDEVGECYP-DV 204 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SEEEEEECTTTSH-------------------------HHHHHHHHHHHHHHTTCT-TS
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEECCccch-------------------------hhhHHHHHHHHHHHHHCC-ce
Confidence 3457899999999999886 7888887533210 011124455555666664 57
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
.++...+ ++..-.++.-= ..+|.||+..
T Consensus 205 ~~~~~~v-D~~~mqlv~~P--~~FDVivt~N 232 (337)
T 1w0d_A 205 EVAYQHV-DAATIHMITDP--GRFDVIVTDN 232 (337)
T ss_dssp EEEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EEEEEEH-HHHHHHHhhCc--ccccEEEECc
Confidence 7666553 33334444333 3778877764
No 148
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=46.61 E-value=74 Score=23.44 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.|++.++|-+.+-...... -.. +-..-..+...++.|
T Consensus 57 ~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~ia~a~~lP 128 (289)
T 2yxg_A 57 KVIEKVVDVVNG---RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEG-----LRKHFGKVAESINLP 128 (289)
T ss_dssp HHHHHHHHHHTT---SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH-----HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhcCCC
Confidence 344444444432 26665555544555554 567889999998887765432 222 112235666778899
Q ss_pred eehhhH
Q 030672 154 RLFGDL 159 (173)
Q Consensus 154 vL~~~~ 159 (173)
|++-..
T Consensus 129 iilYn~ 134 (289)
T 2yxg_A 129 IVLYNV 134 (289)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988443
No 149
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=46.39 E-value=82 Score=23.81 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-.-+...+..+.| .+.|++.++|-+.+-...... -...+ ..-..|...++.|
T Consensus 91 ~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~-----~~f~~VA~a~~lP 162 (332)
T 2r8w_A 91 RAIEAAATILRG---RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAY-----HHFAAVAGATALP 162 (332)
T ss_dssp HHHHHHHHHHTT---SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHH-----HHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHH-----HHHHHHHHhcCCC
Confidence 344444444432 26666655555665555 567889999999888765432 22211 1224566677899
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 163 iilYn~P 169 (332)
T 2r8w_A 163 LAIYNNP 169 (332)
T ss_dssp EEEECCH
T ss_pred EEEEeCc
Confidence 9884433
No 150
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=45.87 E-value=78 Score=22.45 Aligned_cols=48 Identities=6% Similarity=-0.071 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+++-+.+.+++.| +.+......+++. ...++.....++|-||+....
T Consensus 22 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 22 KAYQAQIAEIERLG--GTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHHHHHcC--CEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45556666667777 7666665555553 344556666799999987543
No 151
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=45.77 E-value=80 Score=24.03 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-.-+...+..+.| .+.|++.++|-+.+-...... -.. +-..-..|...++.|
T Consensus 88 ~vi~~~ve~~~g---rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~-----l~~~f~~VA~a~~lP 159 (343)
T 2v9d_A 88 AIARFAIDHVDR---RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEAN-----LIRYFEQVADSVTLP 159 (343)
T ss_dssp HHHHHHHHHHTT---SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHH-----HHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhcCCC
Confidence 344444444432 26666555544555555 567889999998887765432 222 112235667788999
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 160 iilYn~P 166 (343)
T 2v9d_A 160 VMLYNFP 166 (343)
T ss_dssp EEEEECH
T ss_pred EEEEeCc
Confidence 9884433
No 152
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=45.23 E-value=58 Score=21.75 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=24.9
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhh----cCCCEEEEe
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G 124 (173)
+.+.+++.| .++......+|-.+.|.+..++ .++|+||..
T Consensus 26 l~~~l~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 26 IREVLAGGP--FEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHTTSS--EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHCC--CeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344556677 7777766666555555544433 279999883
No 153
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=44.42 E-value=55 Score=21.97 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=23.1
Q ss_pred HHHhcCCceEEEEEEeeCChHHHHHHHHhh----cCCCEEEEe
Q 030672 86 VYRNFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G 124 (173)
.+++.| .++......+|-.+.|.+..++ .++|+||..
T Consensus 39 ~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 39 LLKEAG--HKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHT--CEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHCC--CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344456 7777766666555555554433 379999883
No 154
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=44.33 E-value=70 Score=23.59 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+-...... -...+ .++ ..|...++.
T Consensus 57 ~~v~~~~~~~~~g---r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~-~~f----~~ia~a~~l 128 (291)
T 3a5f_A 57 KETIKFVIDKVNK---RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLV-KHF----KAVSDAVST 128 (291)
T ss_dssp HHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHC-----CTGGGCCS
T ss_pred HHHHHHHHHHhCC---CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-HHH----HHHHHhcCC
Confidence 3445555544432 26665555544555554 567889999999888765432 22211 122 345667789
Q ss_pred CeehhhH
Q 030672 153 SRLFGDL 159 (173)
Q Consensus 153 pvL~~~~ 159 (173)
||++-..
T Consensus 129 PiilYn~ 135 (291)
T 3a5f_A 129 PIIIYNV 135 (291)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9988443
No 155
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=44.20 E-value=68 Score=23.67 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.|++.++|-+++-...... -... -..-..+...++.|
T Consensus 57 ~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l-----~~~f~~ia~a~~lP 128 (292)
T 2vc6_A 57 QVVEITIKTANG---RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGI-----YQHFKAIDAASTIP 128 (292)
T ss_dssp HHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHH-----HHHHHHHHHhCCCC
Confidence 344444444432 25555555554555554 567889999998887765422 2221 11224666778899
Q ss_pred eehhh
Q 030672 154 RLFGD 158 (173)
Q Consensus 154 vL~~~ 158 (173)
|++-.
T Consensus 129 iilYn 133 (292)
T 2vc6_A 129 IIVYN 133 (292)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98843
No 156
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=43.11 E-value=71 Score=23.59 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+-...... ..+. -..-..|...++.|
T Consensus 61 ~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l-----~~~f~~va~a~~lP 132 (293)
T 1f6k_A 61 EIFRIAKDEAKD---QIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEI-----KHYYDTIIAETGSN 132 (293)
T ss_dssp HHHHHHHHHHTT---SSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHhCCCC
Confidence 344444444432 26666555554555554 567889999998887765422 2221 12234556667889
Q ss_pred eehhh
Q 030672 154 RLFGD 158 (173)
Q Consensus 154 vL~~~ 158 (173)
|++-.
T Consensus 133 iilYn 137 (293)
T 1f6k_A 133 MIVYS 137 (293)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88744
No 157
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=42.80 E-value=39 Score=26.18 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|.+.+. .+|+++|=..-.... ..-+.+.+.+.++++. ++.
T Consensus 166 ~~~eRIar~AFe~A~~r~~-kkVt~v~KaNvlk~s-------------------------~glf~~~~~eva~eyp-dv~ 218 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRER-KHVTSATKSNGMAIS-------------------------MPYWDKRTEAMAAHYP-HVS 218 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSS-CEEEEEECTTTSTTH-------------------------HHHHHHHHHHHHTTCT-TCE
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECcchhhhH-------------------------HHHHHHHHHHHHHHCC-Cce
Confidence 4678999999999988762 368888754322110 0123444555555564 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+ ++..-.++.-= ..+|.||+..
T Consensus 219 ~~~~~v-D~~am~lv~~P--~~FDVivt~N 245 (364)
T 3flk_A 219 WDKQHI-DILCARFVLQP--ERFDVVVASN 245 (364)
T ss_dssp EEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred EEeeEH-HHHHHHHHhCc--ccCcEEEecc
Confidence 765544 33334444333 3788777664
No 158
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=42.69 E-value=86 Score=23.85 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCCh----HHHHHHHHhhcCCCEEE-Eec
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA----KDVICGTVEKLEADTLV-MGS 125 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~----~~~I~~~a~~~~~dllV-~G~ 125 (173)
..+++.+.+++.+ +++.+.+..|++ .+.+.+.+++.++|+|| +|.
T Consensus 46 ~~~~v~~~L~~~g--~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG 95 (370)
T 1jq5_A 46 AGHTIVNELKKGN--IAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG 95 (370)
T ss_dssp THHHHHHHHHTTT--CEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcC--CeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4555556666666 666555556654 34566678888999888 553
No 159
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=42.46 E-value=91 Score=22.30 Aligned_cols=50 Identities=6% Similarity=0.032 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEee--CChHH--HHHHHHhhcCCCEEEEecCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGC--GDAKD--VICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~--g~~~~--~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.+++-+.+.+++.| +.+...... +++.. ..++.....++|-||+......
T Consensus 20 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~ 73 (297)
T 3rot_A 20 SLFQGAKKAAEELK--VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDT 73 (297)
T ss_dssp HHHHHHHHHHHHHT--CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSS
T ss_pred HHHHHHHHHHHHhC--cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 34555555556677 666655543 34443 4455566678999998755443
No 160
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=41.61 E-value=1.3e+02 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.4
Q ss_pred ceEEEEEEeeCChHHHHHH--HHhhcCCCEEEEec-CCCChhhh
Q 030672 93 NIHVKRVVGCGDAKDVICG--TVEKLEADTLVMGS-HGYGFIKR 133 (173)
Q Consensus 93 ~v~~~~~~~~g~~~~~I~~--~a~~~~~dllV~G~-~~~~~~~~ 133 (173)
..-+...+..|+..+.|.+ +|.++++|.|.+=+ .|.+.+..
T Consensus 150 ~p~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDy 193 (516)
T 1xrs_A 150 GPLLYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDY 193 (516)
T ss_dssp SCEEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSS
T ss_pred CCEEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcc
Confidence 3556666778999999986 48899999987754 34444443
No 161
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=41.57 E-value=45 Score=25.65 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCc
Q 030672 15 SEESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVY-RNFQNN 93 (173)
Q Consensus 15 s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 93 (173)
...+++.+++|+++|.+.+. .+|+++|=....... ..-+.+.+.+.+ +++. +
T Consensus 156 ~~~~eRiar~AF~~A~~r~r-kkVt~v~KaNvlk~s-------------------------dglf~~~~~eva~~eyp-~ 208 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYNR-KSVTAVHKANIMKLG-------------------------DGLFRNIITEIGQKEYP-D 208 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CEEEEEECTTTSTTH-------------------------HHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcEEEEeCCccchhh-------------------------HHHHHHHHHHHHHhhCC-C
Confidence 34678999999999998742 678888764432211 012344445555 4554 5
Q ss_pred eEEEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 94 IHVKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
+.++...+ ++..-.++.-= ..+|.||...
T Consensus 209 i~~~~~~v-D~~~~qlv~~P--~~FDVivt~N 237 (349)
T 3blx_A 209 IDVSSIIV-DNASMQAVAKP--HQFDVLVTPS 237 (349)
T ss_dssp SEEEEEEH-HHHHHHHHHCG--GGCSEEEECH
T ss_pred eeEEEeeH-HHHHHHHhhCc--ccccEEEECC
Confidence 77665553 33333443333 3778777764
No 162
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=41.40 E-value=50 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=31.7
Q ss_pred EeeCCh----HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 100 VGCGDA----KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 100 ~~~g~~----~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+..|+| ..++++...+.++|+|.+|.+........+ .....+ ++..+|+++
T Consensus 12 it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~-----~~v~~i-r~~~~Pivl 66 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKAR-----TLIEKV-SQYGLPIVV 66 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHHHH-----HHHHHH-TTSCCCEEE
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHH-----HHHHHh-cCCCCCEEE
Confidence 444554 356778888899999999964333344422 223333 447888776
No 163
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=41.37 E-value=94 Score=22.32 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEEe-------eC-Ch--HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhc
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVG-------CG-DA--KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLP 148 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~-------~g-~~--~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~ 148 (173)
....+.+.++++| +++...+. .| ++ .+.+.+.+.+.++|.|.++.. .++.. ...+..
T Consensus 133 ~~~~v~~~~~~~g--~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~~~---------l~~i~~ 199 (273)
T 2qjg_A 133 DLGMIAETCEYWG--MPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDIDS---------FRDVVK 199 (273)
T ss_dssp HHHHHHHHHHHHT--CCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSHHH---------HHHHHH
T ss_pred HHHHHHHHHHHcC--CCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCHHH---------HHHHHH
Confidence 4455555566666 55544431 11 22 233447788999999988842 22332 345555
Q ss_pred CCCCCeeh
Q 030672 149 NSQPSRLF 156 (173)
Q Consensus 149 ~~~~pvL~ 156 (173)
.+++||..
T Consensus 200 ~~~ipvva 207 (273)
T 2qjg_A 200 GCPAPVVV 207 (273)
T ss_dssp HCSSCEEE
T ss_pred hCCCCEEE
Confidence 66889887
No 164
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=41.36 E-value=64 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..+.+.+.+.+++.| .+++..-+.. +..+.+.+..+ .+|.||+++.-.
T Consensus 33 ~~l~~~~~~~~~~~g--~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~y 81 (204)
T 2amj_A 33 DTLTEVADGTLRDLG--HDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHHHcC--CEEEEEeCCccccHHHHHHHHH--hCCEEEEECCcc
Confidence 445555555555556 6777665553 45667777777 899999998654
No 165
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=41.07 E-value=25 Score=26.57 Aligned_cols=72 Identities=6% Similarity=-0.049 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
..++++.+++ .+ .-+=..-..+ ....+|++.|++.+..+|+-.+.+...+.. ..+......+.++..+||
T Consensus 15 ~~~ll~~A~~----~~--yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g---~~~~~~~~~~A~~~~VPV 85 (306)
T 3pm6_A 15 ALPLLTFART----HS--FAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYAD---SLLVRTAASACRAASVPI 85 (306)
T ss_dssp SHHHHHHHHH----TT--CCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHT---THHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHH----CC--cEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcc---HHHHHHHHHHHHHCCCCE
Confidence 3445655544 22 4454555555 778999999999999999987654322211 112234456677899999
Q ss_pred eh
Q 030672 155 LF 156 (173)
Q Consensus 155 L~ 156 (173)
-+
T Consensus 86 aL 87 (306)
T 3pm6_A 86 TL 87 (306)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 166
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=40.95 E-value=1.1e+02 Score=22.75 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+++....... -.. +=..-..|...++.|
T Consensus 72 ~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~lP 143 (304)
T 3l21_A 72 ELLRAVLEAVGD---RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRG-----LQAHFTAVADATELP 143 (304)
T ss_dssp HHHHHHHHHHTT---TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH-----HHHHHHHHHTSCSSC
T ss_pred HHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhcCCC
Confidence 344444444432 26666665544555544 467889999999998765432 222 222346788888999
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 144 iilYn~P 150 (304)
T 3l21_A 144 MLLYDIP 150 (304)
T ss_dssp EEEEECH
T ss_pred EEEEeCc
Confidence 9985443
No 167
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.94 E-value=80 Score=21.20 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHh----hcCCCEEEEe
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVE----KLEADTLVMG 124 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~----~~~~dllV~G 124 (173)
+.+.+.+.| .++......+|-.+.|.+..+ ..++|+||..
T Consensus 45 L~~~L~~~G--~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENG--HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 344555677 888888777766666655433 4578998874
No 168
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=40.91 E-value=1e+02 Score=23.91 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=52.3
Q ss_pred EEEEEecCChHHHHHHHHHHhhcCCCCCCC--------------eEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHH
Q 030672 7 RVVVAVDESEESMHALSWCLNNLFSPDTNN--------------TLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYA 72 (173)
Q Consensus 7 ~ILv~vd~s~~s~~al~~A~~la~~~~~~~--------------~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (173)
+|-|.+.....|++-.+.|-++.+..+ . -=.++|+.-+.+++.
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg--~~pn~~~l~~~~s~~iG~I~~~~~pd~F~s--------------------- 70 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYE--EENKIDKDKDGQTKVKQTIKHVVLPENFTS--------------------- 70 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHH--HHTTCCC-----CCCCEEEEEEECCTTGGG---------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhC--CCcccchhcccccccceEEEEeccCCCchH---------------------
Confidence 677777765566666666666555544 2 124777754444331
Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEEeeC-Ch-HHHHHHHHhhcCCCEEEEecC
Q 030672 73 SESVNSVMNRAEAVYRNFQNNIHVKRVVGCG-DA-KDVICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~-~~~I~~~a~~~~~dllV~G~~ 126 (173)
.....++.....+...+ +...+... .+ ....++.+++..+|.|+++..
T Consensus 71 --e~~ttI~~I~~~a~~~g----yk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 71 --NIDSAINKIVKLADDKE----VQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp --GHHHHHHHHHGGGGCTT----EEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred --HHHHHHHHHHHHhhcCC----CeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 11123555555666666 44444432 22 366788899889998887654
No 169
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=40.82 E-value=42 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEec
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~ 125 (173)
+.++++...+.| ..+...+.-| ++ +. ...+.+.++|.+|+|+
T Consensus 182 I~~lr~~~~~~~--~~~~I~VDGGI~~-~t-i~~~~~aGAD~~V~GS 224 (246)
T 3inp_A 182 AKEISKWISSTD--RDILLEIDGGVNP-YN-IAEIAVCGVNAFVAGS 224 (246)
T ss_dssp HHHHHHHHHHHT--SCCEEEEESSCCT-TT-HHHHHTTTCCEEEESH
T ss_pred HHHHHHHHHhcC--CCeeEEEECCcCH-HH-HHHHHHcCCCEEEEeh
Confidence 445555555555 5566667777 53 33 4456678999999996
No 170
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.52 E-value=63 Score=19.90 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCceEEEEEEee-CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhh
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGC-GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGD 158 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~-g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~ 158 (173)
.+..++.+++.| ++++..... +...+ ... ++|++++|..-+..+.. ..+.....++||+=+.
T Consensus 20 ~~k~~~~~~~~g--i~~~i~a~~~~~~~~----~~~--~~Dvil~~pqv~~~~~~---------~~~~~~~~~v~vI~~~ 82 (106)
T 1e2b_A 20 VSKMRAQAEKYE--VPVIIEAFPETLAGE----KGQ--NADVVLLGPQIAYMLPE---------IQRLLPNKPVEVIDSL 82 (106)
T ss_dssp HHHHHHHHHHSC--CSEEEEEECSSSTTH----HHH--HCSEEEECTTSGGGHHH---------HHHHSSSSCCCBCCHH
T ss_pred HHHHHHHHHHCC--CCeEEEEecHHHHHh----hcc--CCCEEEEccchhhhHHH---------HHHHhcCCCceEECHH
Confidence 445555666777 666644433 33332 234 68999999766544443 2333334577776544
Q ss_pred HH
Q 030672 159 LI 160 (173)
Q Consensus 159 ~~ 160 (173)
.+
T Consensus 83 ~y 84 (106)
T 1e2b_A 83 LY 84 (106)
T ss_dssp HH
T ss_pred Hc
Confidence 33
No 171
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=40.50 E-value=16 Score=30.87 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=38.1
Q ss_pred CChHHHHHHHHhhcCCCEEEEecCCCC---hhhhhhhhcccchHHHHhcCC---CCCeehhhHHHHHHh
Q 030672 103 GDAKDVICGTVEKLEADTLVMGSHGYG---FIKRYKQLILAALSFQFLPNS---QPSRLFGDLILFQIL 165 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G~~~~~---~~~~~~~~~~gs~~~~ll~~~---~~pvL~~~~~~~~~~ 165 (173)
..+.+.|++.|+++++|+|.+++.-.+ .... +..+.+.+-... .+||++|..+.-+.+
T Consensus 643 dVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~-----MkevIelLrE~GlrDkIkVIVGGa~~tqd~ 706 (763)
T 3kp1_A 643 SVPVEKLVDAAIELKADAILASTIISHDDIHYKN-----MKRIHELAVEKGIRDKIMIGCGGTQVTPEV 706 (763)
T ss_dssp SBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHH-----HHHHHHHHHHTTCTTTSEEEEECTTCCHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccCchhhHHH-----HHHHHHHHHhcCCCCCCEEEEECCCCCHHH
Confidence 367899999999999999999865544 2222 333444443332 378888776554443
No 172
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=39.71 E-value=78 Score=24.30 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=66.0
Q ss_pred cEEEEEecC-ChH-HHHHHHHHHhhcCCC----CCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHH-HHHHHHHHH
Q 030672 6 RRVVVAVDE-SEE-SMHALSWCLNNLFSP----DTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVE-KYASESVNS 78 (173)
Q Consensus 6 ~~ILv~vd~-s~~-s~~al~~A~~la~~~----~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 78 (173)
++++|.+.. |-+ -+.++++|..++... + .-+.++.++...|-.. .++-+....++.....+ ..--..+++
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d--~l~~vmR~y~~KPRTs-~g~kGL~nDP~ld~s~~i~~GL~~~R~ 125 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHK--DILIIMRVYFEKPRTT-IGWKGFINDPDLDNSYNINKGLRLARN 125 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTT--TEEEEEECCCCCCCSS-CSCCCTTTCTTSSSCCCHHHHHHHHHH
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcc--cceEEeeecccCCCCC-cCccccccCCCCCCCccHHHHHHHHHH
Confidence 456666554 322 356788888776431 2 3467777765554332 33322221111100000 001112222
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
++. ...+.| .++-+++..-...+ +..+ -+|++.+|++.- +... ..++....+||+|
T Consensus 126 ll~----~~~e~G--LpiatE~ld~~~~q----yv~d-lvs~~aIGARt~enq~h-----------re~asg~s~PVg~ 182 (346)
T 3tqk_A 126 LLS----DLTNMG--LPCATEFLDVITPQ----YFAE-LITWGAIGARTVESQVH-----------RELASGLSASIGF 182 (346)
T ss_dssp HHH----HHHHTT--CCEEEECCSSSGGG----GTGG-GCSEEEECGGGTTCHHH-----------HHHHTTCSSEEEE
T ss_pred HHH----HHHhcC--CCEEEEecCcCCHH----HHHH-HhheeeeCcccccCHHH-----------HHHhcCCCCceEE
Confidence 222 235677 88999988764443 3332 378889998764 3222 4566788999988
No 173
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.57 E-value=99 Score=21.89 Aligned_cols=51 Identities=8% Similarity=-0.021 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~~ 129 (173)
..+++-+.+.+++.| +.+......+++.. ..++.....++|-||+......
T Consensus 24 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 24 QRLINAFKAEAKANK--YEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred HHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 345566666667777 77766655555543 4555666789999998654433
No 174
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=39.17 E-value=92 Score=21.42 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=24.9
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhh---cCCCEEEEe
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllV~G 124 (173)
.+.+++.| .++.......|-.+.|.+..++ .++|+||..
T Consensus 55 ~~~L~~~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 55 TELLTEAG--FVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHTT--EEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 34455577 7777776666555666554433 479999873
No 175
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=39.11 E-value=20 Score=26.79 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=42.1
Q ss_pred EEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 96 VKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 96 ~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+=..-..+ ....+|++.|++.+..+|+-.+.+.....+. ..+......+..++++||-+
T Consensus 20 v~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~--~~~~~~v~~~a~~~~VPVal 79 (286)
T 1gvf_A 20 VPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIAL--EEIYALCSAYSTTYNMPLAL 79 (286)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCH--HHHHHHHHHHHHHTTSCBEE
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCH--HHHHHHHHHHHHhCCCcEEE
Confidence 44444445 7789999999999999999887663221110 23556777888889999987
No 176
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=38.89 E-value=1.1e+02 Score=22.70 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -.. +=..-..|...++.|
T Consensus 61 ~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~-----l~~~f~~va~a~~lP 132 (300)
T 3eb2_A 61 AVVRATIEAAQR---RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQ-----IESYFRAIADAVEIP 132 (300)
T ss_dssp HHHHHHHHHHTT---SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHH-----HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH-----HHHHHHHHHHHCCCC
Confidence 344444444432 26666666555555544 467889999999998765432 222 112335667778899
Q ss_pred eehh
Q 030672 154 RLFG 157 (173)
Q Consensus 154 vL~~ 157 (173)
|++-
T Consensus 133 iilY 136 (300)
T 3eb2_A 133 VVIY 136 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 177
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=38.81 E-value=87 Score=23.28 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCC-C
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQ-P 152 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~-~ 152 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+-...... -...+ ..-..|...++ .
T Consensus 68 ~v~~~~~~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-----~~f~~va~a~~~l 139 (303)
T 2wkj_A 68 QVLEIVAEEAKG---KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHC-----DHYRAIIDSADGL 139 (303)
T ss_dssp HHHHHHHHHHTT---TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHH-----HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHH-----HHHHHHHHhCCCC
Confidence 344444444432 26665555544555554 567889999998887765432 22211 22345666677 8
Q ss_pred CeehhhH
Q 030672 153 SRLFGDL 159 (173)
Q Consensus 153 pvL~~~~ 159 (173)
||++-..
T Consensus 140 PiilYn~ 146 (303)
T 2wkj_A 140 PMVVYNI 146 (303)
T ss_dssp CEEEEEC
T ss_pred CEEEEeC
Confidence 9887443
No 178
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=38.24 E-value=79 Score=23.41 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-.-+...+..+.| .+.|++.++|-+.+-...... -... -..-..|...++.|
T Consensus 57 ~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l-----~~~f~~va~a~~lP 128 (297)
T 2rfg_A 57 RVVALVAEQAQG---RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGL-----YQHFKMVHDAIDIP 128 (297)
T ss_dssp HHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHH-----HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHH-----HHHHHHHHHhcCCC
Confidence 344444444432 25555555444555554 567889999999888765432 2221 12234566677899
Q ss_pred eehhhH
Q 030672 154 RLFGDL 159 (173)
Q Consensus 154 vL~~~~ 159 (173)
|++-..
T Consensus 129 iilYn~ 134 (297)
T 2rfg_A 129 IIVYNI 134 (297)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 988443
No 179
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=37.66 E-value=38 Score=22.20 Aligned_cols=64 Identities=8% Similarity=-0.128 Sum_probs=38.3
Q ss_pred HHHhcCCceEEEEEEee--C-C--hHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 86 VYRNFQNNIHVKRVVGC--G-D--AKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 86 ~~~~~~~~v~~~~~~~~--g-~--~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+++.| ++++..... | + ....|.+..++.++|+||--..+...... -|...++..-.-.+|++-
T Consensus 62 ~L~~~G--i~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~-----d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 62 WLNANN--VPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKFVH-----DNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HHHHTT--CCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGGHH-----HHHHHHHHHHHTTCCEEC
T ss_pred HHHHcC--CeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcCCc-----cHHHHHHHHHHhCCCeEc
Confidence 334566 666655432 2 2 00369999999999999997765322121 444455555566777765
No 180
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=37.30 E-value=45 Score=23.95 Aligned_cols=43 Identities=5% Similarity=-0.026 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 108 VICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 108 ~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
..++.+.+.+.|.+.+|.+..-.... .-.+... ++...+|+++
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~-----~~~~v~~-ik~~~~Pvvl 64 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN-----VLRMMSK-VRRFLVPCVL 64 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH-----HHHHHHH-HTTSSSCEEE
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH-----HHHHHHH-hhccCCCEEE
Confidence 45666678899999999754333333 2223333 3448899887
No 181
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=37.24 E-value=58 Score=23.50 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 107 DVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 107 ~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+.++.+.+.+.|.|.+|-+..-.... .-.+... ++...+|+++
T Consensus 26 ~~~l~~~~~~GtDaI~vGgs~gvt~~~-----~~~~v~~-ik~~~~Piil 69 (235)
T 3w01_A 26 DDDLDAICMSQTDAIMIGGTDDVTEDN-----VIHLMSK-IRRYPLPLVL 69 (235)
T ss_dssp HHHHHHHHTSSCSEEEECCSSCCCHHH-----HHHHHHH-HTTSCSCEEE
T ss_pred HHHHHHHHHcCCCEEEECCcCCcCHHH-----HHHHHHH-hcCcCCCEEE
Confidence 356666778999999999765433443 2222333 4448889855
No 182
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=37.06 E-value=89 Score=21.01 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=22.5
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHh----hcCCCEEEEe
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVE----KLEADTLVMG 124 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~----~~~~dllV~G 124 (173)
+.+.+.| .++......+|-.+.|.+..+ +.++|+||..
T Consensus 35 ~~L~~~G--~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 35 DSAQEAG--HHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHCC--CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3444567 777766666655555544433 2259999883
No 183
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=37.01 E-value=1.2e+02 Score=22.29 Aligned_cols=99 Identities=7% Similarity=0.027 Sum_probs=63.1
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCC---CCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHH
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFS---PDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVM 80 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~---~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (173)
.++.|=|+|.++.+...|+..|..+.+. ... .++.+.|..++. ...+.. +.+. ++-...+
T Consensus 130 ~~~~vrvaVEGNSsQdsAVaIA~~i~~~~~~~~~-~~~~FyH~~d~~-~v~~Pf---ylL~------------~eK~~Af 192 (279)
T 3n4p_A 130 YLDELRIAVEGNTNQAAAVRIACLIRQSVQSSTL-IRVLFYHTPDQN-HIEQPF---YLMG------------RDKALAV 192 (279)
T ss_dssp TCCEEEEEEBCSSCHHHHHHHHHHHHHHHHHHCC-CEEEEECEEETT-TEEESC---BCCS------------THHHHHH
T ss_pred ccceEEEEEecCccHHHHHHHHHHHHHHhhhccc-ccEEEEecCCCc-cccCCc---hhhc------------cchHHHH
Confidence 4678889999988888888888877654 221 358899888765 221111 1111 1223456
Q ss_pred HHHHHHHHhcCCceEEEEEEee-----C-ChHHHHHHHHhhcCCCEEEE
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGC-----G-DAKDVICGTVEKLEADTLVM 123 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~-----g-~~~~~I~~~a~~~~~dllV~ 123 (173)
+.+...+..-. +...-.++. . ||.+-+++..+ |+.-++.
T Consensus 193 e~FI~~fNSG~--i~ASQelVS~TIkLs~DPVeYL~eQi~--ni~~~~~ 237 (279)
T 3n4p_A 193 EQFISRFNSGY--IKASQELVSYTIKLSHDPIEYLLEQIQ--NLHRVTL 237 (279)
T ss_dssp HHHHHHHHTTC--EEEEEEEECSSSBTTBCHHHHHHHHHH--TCCC---
T ss_pred HHHHHHhcCCc--eEEeeeeeeeeEEeccChHHHHHHHHh--hcEEEec
Confidence 66666666555 777766664 4 99999999999 7776666
No 184
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=36.66 E-value=1.3e+02 Score=22.54 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -.+ +=..-..|...++.|
T Consensus 80 ~v~~~~v~~~~g---rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~lP 151 (314)
T 3qze_A 80 QVIRRVVDQVKG---RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEG-----MYQHFRHIAEAVAIP 151 (314)
T ss_dssp HHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH-----HHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHH-----HHHHHHHHHHhcCCC
Confidence 344444444432 25665555544555544 467889999999998765432 222 112235667777999
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 152 iilYn~P 158 (314)
T 3qze_A 152 QILYNVP 158 (314)
T ss_dssp EEEEECH
T ss_pred EEEEeCc
Confidence 9885443
No 185
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=36.48 E-value=1.3e+02 Score=22.24 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -... =..-..+...++.|
T Consensus 64 ~v~~~~~~~~~g---rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l-----~~~f~~va~a~~lP 135 (297)
T 3flu_A 64 AVIEAVVKHVAK---RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGI-----YQHFKTIAEATSIP 135 (297)
T ss_dssp HHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhCC---CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHhCCCC
Confidence 344444444432 25666655544555544 467889999999888765432 2221 12335667778999
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 136 iilYn~P 142 (297)
T 3flu_A 136 MIIYNVP 142 (297)
T ss_dssp EEEEECH
T ss_pred EEEEECC
Confidence 9885443
No 186
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=36.23 E-value=1.1e+02 Score=21.48 Aligned_cols=79 Identities=5% Similarity=-0.021 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++...++....... .+. +...+...+.++.+.+.++++| +.+-
T Consensus 82 ~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~----------~~~-------~~~~~~~~~~l~~l~~~a~~~g--v~l~ 140 (278)
T 1i60_A 82 IITEFKGMMETCKTLG--VKYVVAVPLVTEQK----------IVK-------EEIKKSSVDVLTELSDIAEPYG--VKIA 140 (278)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEECCBCSSC----------CCH-------HHHHHHHHHHHHHHHHHHGGGT--CEEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEecCCCCCC----------CCH-------HHHHHHHHHHHHHHHHHHHhcC--CEEE
Confidence 3566778888888888 77776643111100 000 1222445566777777888888 7766
Q ss_pred EEEeeCC-----hHHHHHHHHhhcC
Q 030672 98 RVVGCGD-----AKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g~-----~~~~I~~~a~~~~ 117 (173)
.+...+. ..+.+.+.+++.+
T Consensus 141 lEn~~~~~~~~~~~~~~~~l~~~~~ 165 (278)
T 1i60_A 141 LEFVGHPQCTVNTFEQAYEIVNTVN 165 (278)
T ss_dssp EECCCCTTBSSCSHHHHHHHHHHHC
T ss_pred EEecCCccchhcCHHHHHHHHHHhC
Confidence 6655432 3566666666554
No 187
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=35.97 E-value=1.3e+02 Score=22.37 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEe
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G 124 (173)
..+.+.+.+++.+ +++....... .....+...+...++|+||+.
T Consensus 43 ~~~~i~~~L~~~g--~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~ 87 (337)
T 2qv7_A 43 ELPDALIKLEKAG--YETSAYATEKIGDATLEAERAMHENYDVLIAA 87 (337)
T ss_dssp HHHHHHHHHHHTT--EEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE
T ss_pred HHHHHHHHHHHcC--CeEEEEEecCcchHHHHHHHHhhcCCCEEEEE
Confidence 3455556666677 6666554443 344455555555678877664
No 188
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.95 E-value=62 Score=23.30 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCCh-----------HHHHHHHHhhcCCCEEEEecCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA-----------KDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~-----------~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+.+.+.+.+++.| ++++..-+..-+ ...+.+... .+|.||+++.-+.
T Consensus 53 La~~~~~~l~~~g--~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~Yn 110 (247)
T 2q62_A 53 LAEEARRLLEFFG--AEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHHHHTT--CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEECSS
T ss_pred HHHHHHHHHhhCC--CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCCCC
Confidence 3444444444456 666555443322 566777777 8999999987653
No 189
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=35.88 E-value=35 Score=25.49 Aligned_cols=61 Identities=11% Similarity=0.054 Sum_probs=41.8
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhhhhhcccchHHHHhc--CCCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRYKQLILAALSFQFLP--NSQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~~~~~~gs~~~~ll~--~~~~pvL~ 156 (173)
.-+=..-..+ ....+|++.|++.+..+|+-.+.+.... .+. .++......+.+ ++.+||-+
T Consensus 21 yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~--~~~~~~v~~~A~~~~~~VPVal 85 (288)
T 3q94_A 21 YAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGF--KTVVAMVKALIEEMNITVPVAI 85 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCH--HHHHHHHHHHHHHTTCCSCEEE
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCH--HHHHHHHHHHHHhcCCCCcEEE
Confidence 3344454555 7789999999999999999876543222 110 124556677788 89999987
No 190
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=35.78 E-value=1e+02 Score=23.02 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -.. +=..-..|...++.|
T Consensus 81 ~v~~~~v~~~~g---rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~-----l~~~f~~va~a~~lP 152 (315)
T 3na8_A 81 EVVDFTLKTVAH---RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAE-----VFQHYRAVGEAIGVP 152 (315)
T ss_dssp HHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHH-----HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH-----HHHHHHHHHHhCCCc
Confidence 344444444432 25565555544555444 467889999999998765432 222 112235667778899
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 153 iilYn~P 159 (315)
T 3na8_A 153 VMLYNNP 159 (315)
T ss_dssp EEEEECH
T ss_pred EEEEeCc
Confidence 9985433
No 191
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=35.75 E-value=1.4e+02 Score=22.45 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=28.0
Q ss_pred HHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 83 AEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 83 ~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+++.| +++.. ...-...++.+..++.++|++|+..-++
T Consensus 55 v~~~A~~~g--Ipv~~--~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 55 VKTLALEHN--VPVYQ--PENFKSDESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHHTT--CCEEC--CSCSCSHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHcC--CCEEc--cCcCCCHHHHHHHHhcCCCEEEEeCccc
Confidence 445566677 77532 1221135788999999999999987654
No 192
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=35.13 E-value=76 Score=21.59 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=24.2
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHHHhh--cCCCEEEEe
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGTVEK--LEADTLVMG 124 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~--~~~dllV~G 124 (173)
.+.+.+.| .++......+|-.+.|.+..++ .++|+||..
T Consensus 29 ~~~L~~~G--~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 29 GNFLTYHG--YQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 34555577 8887777777555555544332 148998873
No 193
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=35.06 E-value=1.3e+02 Score=22.16 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQP 152 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~ 152 (173)
.++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -.+ +=..-..+...++.
T Consensus 57 ~~v~~~~~~~~~g---r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~-----l~~~f~~ia~a~~l 128 (291)
T 3tak_A 57 TQVIKEIIRVANK---RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEG-----LYQHYKAIAEAVEL 128 (291)
T ss_dssp HHHHHHHHHHHTT---SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH-----HHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCC---CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHH-----HHHHHHHHHHhcCC
Confidence 3445555554432 25665555544555544 467889999999988765432 222 11233566777899
Q ss_pred CeehhhHH
Q 030672 153 SRLFGDLI 160 (173)
Q Consensus 153 pvL~~~~~ 160 (173)
||++-..+
T Consensus 129 PiilYn~P 136 (291)
T 3tak_A 129 PLILYNVP 136 (291)
T ss_dssp CEEEEECH
T ss_pred CEEEEecc
Confidence 99885443
No 194
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.04 E-value=84 Score=21.90 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCCh-hhhhhhhcccchHHHHhcC---CCCCee
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGF-IKRYKQLILAALSFQFLPN---SQPSRL 155 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~-~~~~~~~~~gs~~~~ll~~---~~~pvL 155 (173)
+..+.+.+++.| .+++..-+.....+.+.+..+ ++|.|+++- |..+ .-+ .+..+-....+++ ... ++
T Consensus 46 ~~s~~~a~~~lG--~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~G-G~~~~l~~---~L~~~gl~~~l~~~~~~G~-p~ 116 (206)
T 3l4e_A 46 VEAGKKALESLG--LLVEELDIATESLGEITTKLR--KNDFIYVTG-GNTFFLLQ---ELKRTGADKLILEEIAAGK-LY 116 (206)
T ss_dssp HHHHHHHHHHTT--CEEEECCTTTSCHHHHHHHHH--HSSEEEECC-SCHHHHHH---HHHHHTHHHHHHHHHHTTC-EE
T ss_pred HHHHHHHHHHcC--CeEEEEEecCCChHHHHHHHH--hCCEEEECC-CCHHHHHH---HHHHCChHHHHHHHHHcCC-eE
Confidence 444555556677 654433222223455566666 799999976 4432 222 2333333344333 234 45
Q ss_pred hhhHHHHHHhhcc
Q 030672 156 FGDLILFQILQGS 168 (173)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (173)
+|-+--.|.++.+
T Consensus 117 ~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 117 IGESAGAVITSPN 129 (206)
T ss_dssp EEETHHHHTTSSB
T ss_pred EEECHHHHHhccc
Confidence 6666666666543
No 195
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=34.96 E-value=1.2e+02 Score=21.42 Aligned_cols=77 Identities=8% Similarity=-0.104 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Q 030672 20 HALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVKRV 99 (173)
Q Consensus 20 ~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 99 (173)
+.++.++++|+..| ++...+++.+... .+. ....+...+.+..+.+.++++| +.+-.+
T Consensus 84 ~~~~~~i~~A~~lG--~~~v~~~~~p~~~-----------~~~-------~~~~~~~~~~l~~l~~~a~~~G--v~l~lE 141 (281)
T 3u0h_A 84 SLLPDRARLCARLG--ARSVTAFLWPSMD-----------EEP-------VRYISQLARRIRQVAVELLPLG--MRVGLE 141 (281)
T ss_dssp HTHHHHHHHHHHTT--CCEEEEECCSEES-----------SCH-------HHHHHHHHHHHHHHHHHHGGGT--CEEEEE
T ss_pred HHHHHHHHHHHHcC--CCEEEEeecCCCC-----------Ccc-------hhhHHHHHHHHHHHHHHHHHcC--CEEEEE
Confidence 34566888888888 7877665432110 000 1233445566777778888888 776666
Q ss_pred Eee-----------CChHHHHHHHHhhcCC
Q 030672 100 VGC-----------GDAKDVICGTVEKLEA 118 (173)
Q Consensus 100 ~~~-----------g~~~~~I~~~a~~~~~ 118 (173)
... ....+.+.+.+++.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 171 (281)
T 3u0h_A 142 YVGPHHLRHRRYPFVQSLADLKTFWEAIGA 171 (281)
T ss_dssp CCCCGGGCCSSEECCCSHHHHHHHHHHHCC
T ss_pred eccccccccccccccCCHHHHHHHHHHcCC
Confidence 542 2345566666665543
No 196
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=34.73 E-value=81 Score=21.07 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHhcCCceEEEEEEeeCChHHHHHHHHhh---cCCCEEEEe
Q 030672 87 YRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (173)
Q Consensus 87 ~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllV~G 124 (173)
+++.| .++......+|-.+.|.+..++ .++|+||..
T Consensus 38 l~~~G--~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYS--YELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CE--EEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCC--CEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 45566 7777666666555555554433 259999883
No 197
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=34.36 E-value=80 Score=23.09 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 110 CGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 110 ~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
++.++++++|++|+.+........ ..++.++....+|.++
T Consensus 57 ~~~~~~~~pDfvI~isPN~a~PGP-------~~ARE~l~~~~iP~Iv 96 (283)
T 1qv9_A 57 LDIAEDFEPDFIVYGGPNPAAPGP-------SKAREMLADSEYPAVI 96 (283)
T ss_dssp HHHHHHHCCSEEEEECSCTTSHHH-------HHHHHHHHTSSSCEEE
T ss_pred hhhhhhcCCCEEEEECCCCCCCCc-------hHHHHHHHhCCCCEEE
Confidence 344588899999998876543322 2477888888888776
No 198
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=34.23 E-value=1.3e+02 Score=21.72 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~ 127 (173)
.+.+-+.+.+++.| +.+......+++.. ..++.....++|-||+....
T Consensus 20 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 20 DDGNNIVKQLQEAG--YKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHHHcC--CEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34555566666677 77666655556543 34455556689999987654
No 199
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=33.89 E-value=1.1e+02 Score=20.61 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ecCCCChhhhhhhhcccchHHHHh---cCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSHGYGFIKRYKQLILAALSFQFL---PNSQP 152 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~~~~~~~~~~~~~~~gs~~~~ll---~~~~~ 152 (173)
+++-+.+.+.+.|....+...-+-| ...-.+-+.++..++|-||. |.-|.+.... ..-..++.-|+ -.+.+
T Consensus 17 Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd---~Va~~vs~Gl~~v~L~~~v 93 (156)
T 2b99_A 17 MASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDK---VCAHEASLGLMLAQLMTNK 93 (156)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHH---HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhH---HHHHHHHHHHHHHHhhhCC
Confidence 4555556666666223333233345 33445556677778887765 7776655444 23444454443 35789
Q ss_pred Ceehh
Q 030672 153 SRLFG 157 (173)
Q Consensus 153 pvL~~ 157 (173)
||.+|
T Consensus 94 PV~~g 98 (156)
T 2b99_A 94 HIIEV 98 (156)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99987
No 200
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.49 E-value=1.3e+02 Score=21.38 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeC--ChH--HHHHHHHhhcCCCEEEEecCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCG--DAK--DVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g--~~~--~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
.+++-+.+.+++.| +.+......+ ++. ...++.....++|-||+......
T Consensus 22 ~~~~g~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 22 SVNYGMVSEAEKQG--VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp HHHHHHHHHHHHHT--CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred HHHHHHHHHHHHcC--CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 34555555666677 7776666555 543 34555566679999998755433
No 201
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.48 E-value=83 Score=19.54 Aligned_cols=61 Identities=7% Similarity=-0.052 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCceEEEEEEe-eCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhH
Q 030672 82 RAEAVYRNFQNNIHVKRVVG-CGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDL 159 (173)
Q Consensus 82 ~~~~~~~~~~~~v~~~~~~~-~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~ 159 (173)
+.++.+++.| ++++.... .+.. -+... ++|++++|..-+..+.. .........+||..=+.
T Consensus 25 km~~~a~~~g--i~v~i~a~~~~~~----~~~~~--~~DvvLLgPQV~y~~~~---------ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 25 AINEGANLTE--VRVIANSGAYGAH----YDIMG--VYDLIILAPQVRSYYRE---------MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHT--CSEEEEEEETTSC----TTTGG--GCSEEEECGGGGGGHHH---------HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHCC--CceEEEEcchHHH----Hhhcc--CCCEEEEChHHHHHHHH---------HHHHhhhcCCcEEEeCH
Confidence 3334444556 66555442 2332 22334 79999999876654544 35556666788876433
No 202
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=33.40 E-value=1.1e+02 Score=20.56 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeC--ChHHHHHHHHhh-----cCCCEEEE-ec--CCCChhhhhhhhcccchH
Q 030672 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEK-----LEADTLVM-GS--HGYGFIKRYKQLILAALS 143 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~-----~~~dllV~-G~--~~~~~~~~~~~~~~gs~~ 143 (173)
....++++-+.+.+.+.| ..++..-+-| ...-.+-+.++. .++|-+|. |. +|.+.-.. ..-..++
T Consensus 25 ~I~~~Ll~gA~~~l~~~G--~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd---~Va~~v~ 99 (157)
T 2i0f_A 25 DLADALLDGAKAALDEAG--ATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFD---IVSNESC 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHTT--CEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHH---HHHHHHH
Confidence 455678888888888888 6676666667 334445555666 67887765 64 35544333 2344444
Q ss_pred HHH---hcCCCCCeehhhH---HHHHHhhc
Q 030672 144 FQF---LPNSQPSRLFGDL---ILFQILQG 167 (173)
Q Consensus 144 ~~l---l~~~~~pvL~~~~---~~~~~~~~ 167 (173)
.-| --...+||.+|=+ ...|-+.+
T Consensus 100 ~gl~~vsl~~~vPV~~GVLT~~~~eQA~~R 129 (157)
T 2i0f_A 100 RALTDLSVEESIAIGNGILTVENEEQAWVH 129 (157)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESSHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEEeCCCCHHHHHHH
Confidence 444 3457899988522 34555444
No 203
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=33.18 E-value=1.3e+02 Score=21.36 Aligned_cols=79 Identities=5% Similarity=-0.068 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++...++.-..... ... +...+...+.++.+.+.++++| +.+-
T Consensus 82 ~~~~~~~~i~~A~~lG--~~~v~~~~g~~~~~---------~~~--------~~~~~~~~~~l~~l~~~a~~~G--v~l~ 140 (286)
T 3dx5_A 82 TIEKCEQLAILANWFK--TNKIRTFAGQKGSA---------DFS--------QQERQEYVNRIRMICELFAQHN--MYVL 140 (286)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEECSCSSCGG---------GSC--------HHHHHHHHHHHHHHHHHHHHTT--CEEE
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEcCCCCCcc---------cCc--------HHHHHHHHHHHHHHHHHHHHhC--CEEE
Confidence 4556777777888778 77776644221110 000 1122445566777777778888 7666
Q ss_pred EEEeeC---ChHHHHHHHHhhcC
Q 030672 98 RVVGCG---DAKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g---~~~~~I~~~a~~~~ 117 (173)
.+...+ ...+.+.+.+++.+
T Consensus 141 lE~~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 141 LETHPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp EECCTTSTTSSHHHHHHHHHHHC
T ss_pred EecCCCcCcCCHHHHHHHHHhcC
Confidence 665543 22455666666544
No 204
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=33.10 E-value=1.2e+02 Score=21.08 Aligned_cols=81 Identities=7% Similarity=-0.047 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Q 030672 17 ESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHV 96 (173)
Q Consensus 17 ~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 96 (173)
.+.+.++.++++|+..| ++...++.-..+.. .. .+...+...+.++++.+.++++| +.+
T Consensus 82 ~~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~----------~~-------~~~~~~~~~~~l~~l~~~a~~~g--v~l 140 (260)
T 1k77_A 82 EAHADIDLALEYALALN--CEQVHVMAGVVPAG----------ED-------AERYRAVFIDNIRYAADRFAPHG--KRI 140 (260)
T ss_dssp HHHHHHHHHHHHHHHTT--CSEEECCCCBCCTT----------SC-------HHHHHHHHHHHHHHHHHHHGGGT--CEE
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEECcCCCCCC----------CC-------HHHHHHHHHHHHHHHHHHHHHcC--CEE
Confidence 35667888888888889 77766543111000 00 11223455667777778888888 776
Q ss_pred EEEEee-----C---ChHHHHHHHHhhcCC
Q 030672 97 KRVVGC-----G---DAKDVICGTVEKLEA 118 (173)
Q Consensus 97 ~~~~~~-----g---~~~~~I~~~a~~~~~ 118 (173)
-.+... + ...+.+.+.+++.+.
T Consensus 141 ~~E~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (260)
T 1k77_A 141 LVEALSPGVKPHYLFSSQYQALAIVEEVAR 170 (260)
T ss_dssp EECCCCTTTSTTBSCCSHHHHHHHHHHHCC
T ss_pred EEEeCCccCCCcCccCCHHHHHHHHHHhCC
Confidence 665542 1 334566777765543
No 205
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=32.98 E-value=1.1e+02 Score=22.74 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=57.5
Q ss_pred CCCcEEEEEecCChH---HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHH
Q 030672 3 TNERRVVVAVDESEE---SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSV 79 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~---s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
.+.+--|+.+-+.+. ...++++.++++...+ .+|.++-.-.. . + + ..
T Consensus 23 ~~~~g~l~iiGGgedk~~~~~i~~~~v~lagg~~--~~I~~IptAs~---~-----------~---~-----------~~ 72 (291)
T 3en0_A 23 LSSQPAILIIGGAEDKVHGREILQTFWSRSGGND--AIIGIIPSASR---E-----------P---L-----------LI 72 (291)
T ss_dssp -CCSCCEEEECSSCCSSSCCHHHHHHHHHTTGGG--CEEEEECTTCS---S-----------H---H-----------HH
T ss_pred CCCCceEEEEECCCCccChHHHHHHHHHHcCCCC--CeEEEEeCCCC---C-----------h---H-----------HH
Confidence 344455666666543 3578999999987554 56666522111 0 0 0 11
Q ss_pred HHHHHHHHHhcCCce-EEEEEEee---CChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhc
Q 030672 80 MNRAEAVYRNFQNNI-HVKRVVGC---GDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLP 148 (173)
Q Consensus 80 l~~~~~~~~~~~~~v-~~~~~~~~---g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~ 148 (173)
.+.+.+.+++.| . .++..... ......+.+..+ ++|.|.++--....+.+ .+.++-....++
T Consensus 73 ~~~~~~~f~~lG--~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~---~l~~t~l~~~L~ 138 (291)
T 3en0_A 73 GERYQTIFSDMG--VKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCG---LLADTPLMDRIR 138 (291)
T ss_dssp HHHHHHHHHHHC--CSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHH---HHTTCHHHHHHH
T ss_pred HHHHHHHHHHcC--CCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHH---HHHhCCHHHHHH
Confidence 222234445556 5 44443332 123456777888 89999998644333333 344554444443
No 206
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=32.71 E-value=29 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+.+++.++.|.++...++ +++.|+..| +++.++.-.+
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDRE--MLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEECCC
Confidence 45789999999998887776 567788888 8887775543
No 207
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=32.16 E-value=1.4e+02 Score=21.57 Aligned_cols=49 Identities=10% Similarity=0.019 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCceEEEEE-EeeCChHHH--HHHHHhhcCCCEEEEecCCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRV-VGCGDAKDV--ICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~-~~~g~~~~~--I~~~a~~~~~dllV~G~~~~~ 129 (173)
+.+-+.+.+++.| +++... ...+++..+ .++.....++|.||+......
T Consensus 21 ~~~g~~~~~~~~g--~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~ 72 (316)
T 1tjy_A 21 GGNGAQEAGKALG--IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPD 72 (316)
T ss_dssp HHHHHHHHHHHHT--CEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSS
T ss_pred HHHHHHHHHHHhC--CEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 3444444555566 555543 123455433 344455679999998765443
No 208
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=31.92 E-value=1.2e+02 Score=22.42 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+. + .+++-..+...+..+.| .+.+++.++|-+.+....... -...+ ..-..|...++.|
T Consensus 59 ~v~~~~~~~~~--g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-----~~f~~ia~a~~lP 130 (292)
T 3daq_A 59 LILKTVIDLVD--K-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLV-----KHFEAIADAVKLP 130 (292)
T ss_dssp HHHHHHHHHHT--T-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHH-----HHHHHHHHHHCSC
T ss_pred HHHHHHHHHhC--C-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH-----HHHHHHHHhCCCC
Confidence 34444444442 2 36666665554555554 467889999999888665322 22211 1234556666899
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++=..+
T Consensus 131 iilYn~P 137 (292)
T 3daq_A 131 VVLYNVP 137 (292)
T ss_dssp EEEEECH
T ss_pred EEEEecc
Confidence 9884433
No 209
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=31.79 E-value=1.1e+02 Score=22.84 Aligned_cols=70 Identities=11% Similarity=0.047 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+.. +..+.| .+.|++.++|-+.+....... -...+ ..-..|...++.|
T Consensus 69 ~v~~~~v~~~~g---rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-----~~f~~va~a~~lP 139 (316)
T 3e96_A 69 EEVRRTVEYVHG---RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVY-----AYFRDIIEALDFP 139 (316)
T ss_dssp HHHHHHHHHHTT---SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHH-----HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCC---CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-----HHHHHHHHhCCCC
Confidence 344444444432 2666666643 555544 467889999999997655422 22211 1224555556788
Q ss_pred eeh
Q 030672 154 RLF 156 (173)
Q Consensus 154 vL~ 156 (173)
|++
T Consensus 140 iil 142 (316)
T 3e96_A 140 SLV 142 (316)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 210
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=31.78 E-value=1e+02 Score=21.59 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCceE-EEEEEeeCChHHHHHHHHhhcCCCEEEEecCC-CChhhhhhhhcccchHHHHhcCCCCCe
Q 030672 77 NSVMNRAEAVYRNFQNNIH-VKRVVGCGDAKDVICGTVEKLEADTLVMGSHG-YGFIKRYKQLILAALSFQFLPNSQPSR 154 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~-~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~-~~~~~~~~~~~~gs~~~~ll~~~~~pv 154 (173)
+..++.+.+.+++.+ ++ +-.....|..+....+.. .+..+|++..+. ...... ..+..-..+-+....++|
T Consensus 29 ~~tl~la~era~e~~--Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~---~e~~~e~~~~L~~~G~~V 101 (201)
T 1vp8_A 29 EETLRLAVERAKELG--IKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGE---NTMPPEVEEELRKRGAKI 101 (201)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTC---CSSCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCC---CcCCHHHHHHHHhCCCEE
Confidence 456666777777777 43 223333466666666666 478999998653 222222 446777777788888888
Q ss_pred ehh
Q 030672 155 LFG 157 (173)
Q Consensus 155 L~~ 157 (173)
+.+
T Consensus 102 ~t~ 104 (201)
T 1vp8_A 102 VRQ 104 (201)
T ss_dssp EEC
T ss_pred EEE
Confidence 754
No 211
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.38 E-value=1.4e+02 Score=21.21 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+.+-+.+.+++.| +.+...-. +++.. ..++.....++|-||+.....
T Consensus 19 ~~~~gi~~~a~~~g--~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~ 68 (306)
T 8abp_A 19 TEWKFADKAGKDLG--FEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDP 68 (306)
T ss_dssp HHHHHHHHHHHHHT--EEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHcC--CEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 34555555566667 66654332 35433 344555567899999876543
No 212
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=31.34 E-value=1.5e+02 Score=22.51 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYG 129 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~ 129 (173)
+++.+.+.+.+.+.+ ++++..-........+.+... ++|.||+|+.-..
T Consensus 271 ~~la~~i~~~l~~~g--~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~ 319 (414)
T 2q9u_A 271 HRMALALLDGARSTG--CETVLLEMTSSDITKVALHTY--DSGAVAFASPTLN 319 (414)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHHHHHhCC--CeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccC
Confidence 344444455555555 666555444433445555555 8999999987653
No 213
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.34 E-value=1.4e+02 Score=21.22 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEEE-eeCChHH--HHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVV-GCGDAKD--VICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~-~~g~~~~--~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+++-+.+.+++.| ..+.... ..+++.. ..++.....++|-||+.....
T Consensus 21 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 72 (305)
T 3g1w_A 21 RCLKGFEDAAQALN--VTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP 72 (305)
T ss_dssp HHHHHHHHHHHHHT--CEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST
T ss_pred HHHHHHHHHHHHcC--CEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 34555556666677 6666532 2345543 345555667999988865443
No 214
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=30.98 E-value=1.2e+02 Score=20.33 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ecC--CCChhhhhhhhcccchHHHHh-
Q 030672 74 ESVNSVMNRAEAVYRNFQNNIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSH--GYGFIKRYKQLILAALSFQFL- 147 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~~--~~~~~~~~~~~~~gs~~~~ll- 147 (173)
....++++-+.+.+.+.|....++..-+-| ...-.+-+.++..++|-+|. |.- |.+.-.. ..-..+++-|+
T Consensus 26 ~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd---~Va~~v~~gl~~ 102 (156)
T 1c2y_A 26 FVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYD---AVVNSASSGVLS 102 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHH---HHHHHHHHHHHH
Confidence 456678888888888888211234444445 33344455677778887765 654 5444333 23444555443
Q ss_pred --cCCCCCeehhhH---HHHHHhhcc
Q 030672 148 --PNSQPSRLFGDL---ILFQILQGS 168 (173)
Q Consensus 148 --~~~~~pvL~~~~---~~~~~~~~~ 168 (173)
-...+||.+|=+ ...|-+++.
T Consensus 103 v~L~~~vPV~~GVLT~~~~eQA~~Ra 128 (156)
T 1c2y_A 103 AGLNSGVPCVFGVLTCDNMDQAINRA 128 (156)
T ss_dssp HHHHHTSCEEEEEECCSSHHHHHHHE
T ss_pred HHhhcCCCEEEEEeCCCCHHHHHHHc
Confidence 357899887422 344655543
No 215
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=30.97 E-value=76 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 3 TNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 3 ~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.+.++|++++|.++. .++.|++. + +.+.+.|
T Consensus 33 ~~V~~I~~~lD~t~~---vi~eAi~~----~--adlIitH 63 (247)
T 1nmo_A 33 ETVQKIVTGVTASQA---LLDEAVRL----G--ADAVIVH 63 (247)
T ss_dssp SBCCEEEEEEECCHH---HHHHHHHT----T--CSEEEEE
T ss_pred CccCEEEEEEcCCHH---HHHHHHhC----C--CCEEEEC
Confidence 467999999999875 47777664 5 6666665
No 216
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=30.93 E-value=58 Score=24.53 Aligned_cols=58 Identities=7% Similarity=-0.119 Sum_probs=40.5
Q ss_pred EEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 96 VKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 96 ~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+=..-..+ ....+|++.|++.+..+|+-.+.+.....+. .++......... ..+||-+
T Consensus 19 V~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~--~~~~~~v~~~a~-~~VPVal 77 (305)
T 1rvg_A 19 VGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGR--ALTLMAVELAKE-ARVPVAV 77 (305)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHH--HHHHHHHHHHHH-CSSCEEE
T ss_pred EEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCH--HHHHHHHHHHHh-CCCcEEE
Confidence 44444445 7789999999999999999887653222111 235566677777 8999987
No 217
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.78 E-value=55 Score=23.72 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+.++.+.+++.| ..+-..+--+.+.+.+..+.. .+|+|.+.+..
T Consensus 123 ~~~~i~~ir~~G--~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~ 166 (246)
T 3inp_A 123 IDRSLQLIKSFG--IQAGLALNPATGIDCLKYVES--NIDRVLIMSVN 166 (246)
T ss_dssp HHHHHHHHHTTT--SEEEEEECTTCCSGGGTTTGG--GCSEEEEECSC
T ss_pred HHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHh--cCCEEEEeeec
Confidence 455566667777 777666655677777777777 68888766543
No 218
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=30.50 E-value=1.3e+02 Score=20.62 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=20.2
Q ss_pred cCCceEEEEEEeeCChHHHHHHHHh----hcCCCEEEEe
Q 030672 90 FQNNIHVKRVVGCGDAKDVICGTVE----KLEADTLVMG 124 (173)
Q Consensus 90 ~~~~v~~~~~~~~g~~~~~I~~~a~----~~~~dllV~G 124 (173)
.| ..+......+|-.+.|.+..+ +.++|+||..
T Consensus 49 ~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 49 LG--GTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp TC--CEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CC--cEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 56 666666666654555554433 3379999883
No 219
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=30.49 E-value=1.5e+02 Score=22.16 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh--hhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF--IKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~--~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
++++.+.+.+.. .+++-..+...+..+.| .+.+++.++|-+.+....... -... =..-..|...++.|
T Consensus 79 ~v~~~~v~~~~g---rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l-----~~~f~~va~a~~lP 150 (315)
T 3si9_A 79 RIIELCVEQVAK---RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGL-----YTHFSSIAKAISIP 150 (315)
T ss_dssp HHHHHHHHHHTT---SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHH-----HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCC---CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHH-----HHHHHHHHHcCCCC
Confidence 344444444432 25565555544555544 467889999999988765432 2221 12235666777999
Q ss_pred eehhhHH
Q 030672 154 RLFGDLI 160 (173)
Q Consensus 154 vL~~~~~ 160 (173)
|++-..+
T Consensus 151 iilYn~P 157 (315)
T 3si9_A 151 IIIYNIP 157 (315)
T ss_dssp EEEEECH
T ss_pred EEEEeCc
Confidence 9985443
No 220
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=30.31 E-value=1.7e+02 Score=21.94 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=20.5
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
|.+++++|||.=. .... ...+.. ++..| .++.++...+
T Consensus 7 m~~~~~~ili~g~-g~~~---~~~~~a-~~~~G--~~v~~~~~~~ 44 (391)
T 1kjq_A 7 LRPAATRVMLLGS-GELG---KEVAIE-CQRLG--VEVIAVDRYA 44 (391)
T ss_dssp TSTTCCEEEEESC-SHHH---HHHHHH-HHTTT--CEEEEEESST
T ss_pred CCCCCCEEEEECC-CHHH---HHHHHH-HHHcC--CEEEEEECCC
Confidence 5556789988733 3322 222222 23456 7777776543
No 221
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=29.92 E-value=63 Score=23.07 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
+.++.+.+++.| ..+-..+--++|.+.+..+.. .+|+|.+-+..
T Consensus 95 ~~~~i~~i~~~G--~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~ 138 (231)
T 3ctl_A 95 AFRLIDEIRRHD--MKVGLILNPETPVEAMKYYIH--KADKITVMTVD 138 (231)
T ss_dssp HHHHHHHHHHTT--CEEEEEECTTCCGGGGTTTGG--GCSEEEEESSC
T ss_pred HHHHHHHHHHcC--CeEEEEEECCCcHHHHHHHHh--cCCEEEEeeec
Confidence 556667777788 777776655678787777777 78888654443
No 222
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=29.87 E-value=88 Score=24.04 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChh-hhh-h------hhcccchHHHH
Q 030672 76 VNSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFI-KRY-K------QLILAALSFQF 146 (173)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~-~~~-~------~~~~gs~~~~l 146 (173)
.+++++.+++ .+ .-+=..-..+ ....+|++.|++.+..+|+-.+.+.... ... + ...+......+
T Consensus 9 ~~~ll~~A~~----~~--yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~ 82 (349)
T 3elf_A 9 YAEMLGQAKQ----NS--YAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVI 82 (349)
T ss_dssp HHHHHHHHHH----TT--CCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cC--ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHH
Confidence 3445555444 33 4454555555 7789999999999999999876543211 110 0 01133455677
Q ss_pred hcCCCCCeeh
Q 030672 147 LPNSQPSRLF 156 (173)
Q Consensus 147 l~~~~~pvL~ 156 (173)
..+..+||.+
T Consensus 83 A~~~~VPVaL 92 (349)
T 3elf_A 83 AAKYPVNVAL 92 (349)
T ss_dssp HTTSSSCEEE
T ss_pred HHHCCCCEEE
Confidence 8889999987
No 223
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.86 E-value=49 Score=24.69 Aligned_cols=44 Identities=7% Similarity=0.124 Sum_probs=29.4
Q ss_pred HHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 109 ICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 109 I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
+++.+.+.+.|.+++|+.+-+.|.. -+..+...+=+...+||++
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~----~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFES----HMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHH----HHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHhcCCCEEEEccCCCCcchH----HHHHHHHHHHHhCCCCEEE
Confidence 6777788899999999555543332 1334445555558999988
No 224
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=29.85 E-value=1.4e+02 Score=24.14 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=28.6
Q ss_pred HHHHHHHH-hhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 106 KDVICGTV-EKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 106 ~~~I~~~a-~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
...+.+.+ ++.++|.||+-.+..+.-+- ...+++..++|||+
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~a~~---------~i~~l~~l~~PvL~ 102 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSPAKM---------WINGLTMLNKPLLQ 102 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCCTHH---------HHHHHHHCCSCEEE
T ss_pred HHHHHHHhccccCCcEEEEeCCcCccHHH---------HHHHHHhcCCCEEE
Confidence 34445555 56689999998776654443 34566678899998
No 225
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=29.77 E-value=73 Score=21.33 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=23.1
Q ss_pred HHHHhcCCceEEEEEEeeCChHHHHHHHHhh---cCCCEEEEe
Q 030672 85 AVYRNFQNNIHVKRVVGCGDAKDVICGTVEK---LEADTLVMG 124 (173)
Q Consensus 85 ~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~---~~~dllV~G 124 (173)
+.+++.| .++.......|- +.|.+..++ .++|+||..
T Consensus 34 ~~l~~~G--~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 34 EWLAQQG--FSSAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHTT--CEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHCC--CEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 4445567 666655555554 666665443 479999873
No 226
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.75 E-value=1.2e+02 Score=20.08 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=20.1
Q ss_pred eEEEEEEeeCChHHHHHHHHhh----cCCCEEEEe
Q 030672 94 IHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G 124 (173)
.++.......|-.+.|.+..++ .++|+||..
T Consensus 44 ~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 44 AKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp EEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 7777666666555555554443 479999883
No 227
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=29.73 E-value=1.5e+02 Score=21.08 Aligned_cols=76 Identities=11% Similarity=-0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++...+|.-..+.. . +...+...+.++++.+.++++| +.+-
T Consensus 100 ~~~~~~~~i~~a~~lG--~~~v~~~~G~~~~~-----------~--------~~~~~~~~~~l~~l~~~a~~~G--v~l~ 156 (290)
T 3tva_A 100 RVAEMKEISDFASWVG--CPAIGLHIGFVPES-----------S--------SPDYSELVRVTQDLLTHAANHG--QAVH 156 (290)
T ss_dssp HHHHHHHHHHHHHHHT--CSEEEECCCCCCCT-----------T--------SHHHHHHHHHHHHHHHHHHTTT--CEEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEcCCCCccc-----------c--------hHHHHHHHHHHHHHHHHHHHcC--CEEE
Confidence 4567788888888889 88887764211100 0 1122445566777888888888 7666
Q ss_pred EEEeeCChHHHHHHHHhhcC
Q 030672 98 RVVGCGDAKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~ 117 (173)
.+....+ .+.+.+..++.+
T Consensus 157 lE~~~~~-~~~~~~l~~~~~ 175 (290)
T 3tva_A 157 LETGQES-ADHLLEFIEDVN 175 (290)
T ss_dssp EECCSSC-HHHHHHHHHHHC
T ss_pred EecCCCC-HHHHHHHHHhcC
Confidence 6555433 455556666544
No 228
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=29.53 E-value=1.4e+02 Score=20.70 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEe--eCChHH--HHHHHHhhcC-CCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVG--CGDAKD--VICGTVEKLE-ADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~--~g~~~~--~I~~~a~~~~-~dllV~G~~~ 127 (173)
++++-+.+.+++.| ..+..... .+++.. ..++.....+ +|-||+....
T Consensus 17 ~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 17 QVYLGAQKAADEAG--VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp HHHHHHHHHHHHHT--CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred HHHHHHHHHHHHcC--CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34555555666677 66665542 234433 3444444556 9999987643
No 229
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=29.06 E-value=1.9e+02 Score=22.70 Aligned_cols=30 Identities=3% Similarity=0.012 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
..+++.+++|+++|.+.+. .+|+++|=..-
T Consensus 197 ~~~eRiar~AFe~A~~r~r-kkVt~v~KaNV 226 (412)
T 2iv0_A 197 FATKRLVRMAIRYAIENNR-KSVTLVHKGNI 226 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcCC-CcEEEEECccc
Confidence 4588999999999987642 57988875443
No 230
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=29.02 E-value=1.5e+02 Score=20.88 Aligned_cols=79 Identities=11% Similarity=-0.050 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++...++.- .+.. .. .+...+...+.++++.+.++++| +.+-
T Consensus 91 ~~~~~~~~i~~A~~lG--a~~v~~~~g-~~~~----------~~-------~~~~~~~~~~~l~~l~~~a~~~G--v~l~ 148 (269)
T 3ngf_A 91 FRDNVDIALHYALALD--CRTLHAMSG-ITEG----------LD-------RKACEETFIENFRYAADKLAPHG--ITVL 148 (269)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEECCBC-BCTT----------SC-------HHHHHHHHHHHHHHHHHHHGGGT--CEEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEccC-CCCC----------CC-------HHHHHHHHHHHHHHHHHHHHHcC--CEEE
Confidence 4567888888889889 787766542 1100 00 11223455667778888888888 7777
Q ss_pred EEEee--------CChHHHHHHHHhhcCC
Q 030672 98 RVVGC--------GDAKDVICGTVEKLEA 118 (173)
Q Consensus 98 ~~~~~--------g~~~~~I~~~a~~~~~ 118 (173)
.+... ....+.+.+.+++.+.
T Consensus 149 lE~~n~~~~~~~~~~~~~~~~~l~~~v~~ 177 (269)
T 3ngf_A 149 VEPLNTRNMPGYFIVHQLEAVGLVKRVNR 177 (269)
T ss_dssp ECCCCTTTSTTBSCCCHHHHHHHHHHHCC
T ss_pred EeeCCcccCccchhcCHHHHHHHHHHhCC
Confidence 66532 1234566666665543
No 231
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=28.83 E-value=91 Score=24.53 Aligned_cols=30 Identities=0% Similarity=-0.009 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
..+++.+++|+++|.+.+. .+|+++|=..-
T Consensus 197 ~~~eRiar~AFe~A~~r~r-kkVt~v~KaNV 226 (409)
T 2e0c_A 197 YKTQRITRLAIQYAIEHKR-KKVTIMHKGNV 226 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcCC-CcEEEEECccc
Confidence 4688999999999987642 57888876443
No 232
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=27.40 E-value=1.7e+02 Score=20.90 Aligned_cols=79 Identities=5% Similarity=-0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+.+.++.++++|+..| ++..+++-.... . . ... +...+...+.++++.+.+++.| +.+-
T Consensus 106 ~~~~~~~~i~~A~~lG--~~~v~~~~~~~~--~---~----~~~--------~~~~~~~~~~l~~l~~~a~~~G--v~l~ 164 (295)
T 3cqj_A 106 GLEIMRKAIQFAQDVG--IRVIQLAGYDVY--Y---Q----EAN--------NETRRRFRDGLKESVEMASRAQ--VTLA 164 (295)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEECCCSCS--S---S----CCC--------HHHHHHHHHHHHHHHHHHHHHT--CEEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEECCCCCC--c---C----cCH--------HHHHHHHHHHHHHHHHHHHHhC--CEEE
Confidence 3466788888888888 787666522110 0 0 001 1122344556677777777888 7766
Q ss_pred EEEeeC---ChHHHHHHHHhhcC
Q 030672 98 RVVGCG---DAKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~g---~~~~~I~~~a~~~~ 117 (173)
.+...+ ...+.+.+.+++.+
T Consensus 165 lEn~~~~~~~~~~~~~~l~~~v~ 187 (295)
T 3cqj_A 165 MEIMDYPLMNSISKALGYAHYLN 187 (295)
T ss_dssp EECCSSGGGCSHHHHHHHHHHHC
T ss_pred EeeCCCcccCCHHHHHHHHHhcC
Confidence 666543 23456666666544
No 233
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=27.07 E-value=1.9e+02 Score=21.24 Aligned_cols=42 Identities=5% Similarity=0.030 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEe
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G 124 (173)
.+.+...+++.+ ++++...... .....+.+.+.+ ++|.||+.
T Consensus 28 ~~~i~~~l~~~~--~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~ 70 (304)
T 3s40_A 28 LTKIVPPLAAAF--PDLHILHTKEQGDATKYCQEFAS-KVDLIIVF 70 (304)
T ss_dssp HHHHHHHHHHHC--SEEEEEECCSTTHHHHHHHHHTT-TCSEEEEE
T ss_pred HHHHHHHHHHcC--CeEEEEEccCcchHHHHHHHhhc-CCCEEEEE
Confidence 344445555566 6666655443 445555555433 77877664
No 234
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=26.95 E-value=1.5e+02 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=19.0
Q ss_pred hcCCceEEEEEEeeCChHHHHHHHHhh----cCCCEEEEe
Q 030672 89 NFQNNIHVKRVVGCGDAKDVICGTVEK----LEADTLVMG 124 (173)
Q Consensus 89 ~~~~~v~~~~~~~~g~~~~~I~~~a~~----~~~dllV~G 124 (173)
+.| .++ .....+|-.+.|.+..++ .++|+||..
T Consensus 39 ~~G--~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITP--FEV-EYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSC--CEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCC--CEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 567 666 344555444444444332 379999883
No 235
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.82 E-value=43 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+.+++.++.|.++...++ +++.|+..| +++.++.-.+
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTRD--MTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCCC
Confidence 45789999999988887765 556678878 8887775543
No 236
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.58 E-value=1.2e+02 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+++.+.+.+++.| .+++..-+.. ...+...+..+ .+|.||++..-.
T Consensus 47 ~L~~~~~~~l~~~g--~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~y 94 (218)
T 3rpe_A 47 TLTNVAADFLRESG--HQVKITTVDQGYDIESEIENYL--WADTIIYQMPAW 94 (218)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEEGGGCCCHHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHhhCC--CEEEEEECCCccCHHHHHHHHH--hCCEEEEECChH
Confidence 34555555555566 6666655543 33445555566 899999997643
No 237
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=26.27 E-value=2.6e+02 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=23.8
Q ss_pred EEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 99 VVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 99 ~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
.+..+.-...+.+.+++.++|+++=+++++
T Consensus 420 ~v~~~~D~~~l~~~i~~~~pDLlig~s~~k 449 (523)
T 3u7q_B 420 TVYIGKDLWHLRSLVFTDKPDFMIGNSYGK 449 (523)
T ss_dssp EEEESCCHHHHHHHHHHTCCSEEEECTTHH
T ss_pred EEEECCCHHHHHHHHHhcCCCEEEECccHH
Confidence 456675678888999999999999887654
No 238
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=26.06 E-value=2.6e+02 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=28.3
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
.+++++++++.-.|.-++..+.+. .+ .+++++|+...
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a---~G--~~v~av~v~~g 263 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRA---IG--KNLTCVFVDNG 263 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH---HG--GGEEEEEEECS
T ss_pred ccceEEEecCCCCHHHHHHHHHHH---hC--CCEEEEEEeCC
Confidence 378999999988888777666553 25 68999999654
No 239
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.05 E-value=1e+02 Score=22.23 Aligned_cols=45 Identities=7% Similarity=-0.035 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 106 KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
..++++...+.++|++.+|-+........+ .....+ ++..+|+++
T Consensus 22 t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~-----~~v~~i-r~~~~Pivl 66 (240)
T 1viz_A 22 PDEQLEILCESGTDAVIIGGSDGVTEDNVL-----RMMSKV-RRFLVPCVL 66 (240)
T ss_dssp CHHHHHHHHTSCCSEEEECC----CHHHHH-----HHHHHH-TTSSSCEEE
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHH-----HHHHHh-hCcCCCEEE
Confidence 356778888899999999964322233321 122333 447888876
No 240
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=25.89 E-value=85 Score=19.01 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=25.9
Q ss_pred CcEEEEEecCC----hHHHHHHHHHHhhcCCCCCCC-eEEEEEEeC
Q 030672 5 ERRVVVAVDES----EESMHALSWCLNNLFSPDTNN-TLVLLYVKP 45 (173)
Q Consensus 5 ~~~ILv~vd~s----~~s~~al~~A~~la~~~~~~~-~l~~l~v~~ 45 (173)
|+++++.+..+ +.+..++++|..++...+ . ++.++...+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g--~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQES--NLDLRLFLMSD 44 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCT--TCEEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCC--CccEEEEEEch
Confidence 35676666554 556778999988776535 5 776665544
No 241
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=25.45 E-value=1.4e+02 Score=21.28 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEe-cC
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMG-SH 126 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G-~~ 126 (173)
++++++...+.+ ..+...+.-|=-.+.+.+. .+.++|.+|+| +.
T Consensus 154 I~~lr~~~~~~~--~~~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 154 LAELKAWREREG--LEYEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHHT--CCCEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HHHHHHHHhccC--CCceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 334445554444 4455556666223334333 44589999999 54
No 242
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=25.18 E-value=67 Score=20.97 Aligned_cols=60 Identities=3% Similarity=-0.109 Sum_probs=36.8
Q ss_pred cCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecC--CCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 90 FQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSH--GYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 90 ~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~--~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.| ++++...... .-...|.+.+++..+|+||--.. +...-.. -|....+..-.-.+|++-
T Consensus 48 ~G--l~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~-----D~~~IrR~A~~~~IP~~T 110 (134)
T 2xw6_A 48 TG--LTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPLTAQPHEP-----DVQALLRVCDVHGVPLAT 110 (134)
T ss_dssp HC--CCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTTTCCTTSC-----CSHHHHHHHHHHTCCEEC
T ss_pred hC--ceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcccCCCccc-----hHHHHHHHHHHcCCCeEc
Confidence 46 7776654322 22347999999999999999776 4222111 444445555556666664
No 243
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.11 E-value=1.2e+02 Score=18.48 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCCeehhhHH
Q 030672 81 NRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPSRLFGDLI 160 (173)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~~~~~ 160 (173)
++.++.+.+.| ++++.....-.- +.+... ++|+++.+..-...+.+ .........+||..-+..
T Consensus 22 ~kl~~~~~~~g--i~~~i~~~~~~~---~~~~~~--~~D~Ii~t~~l~~~~~~---------~~~~~~~~~~pv~~I~~~ 85 (109)
T 2l2q_A 22 QRIEKYAKSKN--INATIEAIAETR---LSEVVD--RFDVVLLAPQSRFNKKR---------LEEITKPKGIPIEIINTI 85 (109)
T ss_dssp HHHHHHHHHHT--CSEEEEEECSTT---HHHHTT--TCSEEEECSCCSSHHHH---------HHHHHHHHTCCEEECCHH
T ss_pred HHHHHHHHHCC--CCeEEEEecHHH---HHhhcC--CCCEEEECCccHHHHHH---------HHHHhcccCCCEEEEChH
Confidence 34444555566 655543332222 222334 89999999765544443 122333335677654443
Q ss_pred HH
Q 030672 161 LF 162 (173)
Q Consensus 161 ~~ 162 (173)
.+
T Consensus 86 ~y 87 (109)
T 2l2q_A 86 DY 87 (109)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 244
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=25.02 E-value=1.6e+02 Score=19.74 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhcCCc-eEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ecC--CCChhhhhhhhcccchHHHHh
Q 030672 74 ESVNSVMNRAEAVYRNFQNN-IHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSH--GYGFIKRYKQLILAALSFQFL 147 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~~--~~~~~~~~~~~~~gs~~~~ll 147 (173)
....++++-+.+.+.+.|.. ..++..-+-| ...-.+-+.++..++|-+|. |.- |.+.-.. ..-..++.-|+
T Consensus 24 ~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd---~Va~~vs~Gl~ 100 (157)
T 2obx_A 24 DIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHE---FVASAVIDGMM 100 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHH---HHHHHHHHHHH
Confidence 34556777777777766621 2345555556 44455556677778887765 654 5444333 23444444443
Q ss_pred ---cCCCCCeehh
Q 030672 148 ---PNSQPSRLFG 157 (173)
Q Consensus 148 ---~~~~~pvL~~ 157 (173)
-...+||.+|
T Consensus 101 ~v~L~~~vPV~~G 113 (157)
T 2obx_A 101 NVQLSTGVPVLSA 113 (157)
T ss_dssp HHHHHHCCCEEEE
T ss_pred HHHhhcCCCEEEE
Confidence 3578999887
No 245
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=24.95 E-value=1.8e+02 Score=20.45 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+++-+.+.+++.| +.+......+++. ..+++.....++|-||+....
T Consensus 24 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 24 AEVASGVESEARHKG--YSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345666666677777 7776655555544 346666777899998886543
No 246
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.91 E-value=1.5e+02 Score=19.53 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=28.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+.++++++.|.++...++ +++.|+..| +++.++.-.+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~ 124 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVA-ALAGAAERG--VPTMALTDSS 124 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHH-HHHHHHHTT--CCEEEEESCT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CCEEEEeCCC
Confidence 45789999999888776555 455677778 8888776543
No 247
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.89 E-value=2e+02 Score=20.89 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSH 126 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~ 126 (173)
.++.-+.+.+++.| ..+......+++.. ..++.....++|-||+...
T Consensus 80 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 80 ELLFHAARMAEEKG--RQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 34555556666677 66655544444433 3456666778888888654
No 248
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=24.89 E-value=66 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=40.1
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC-CCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN-SQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~-~~~pvL~ 156 (173)
.-+=..-..+ ....+|++.|++.+..+|+-.+.+.....+. .++.......+.+ ..+||-+
T Consensus 18 yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~--~~~~~~v~~aa~~~~~VPVal 80 (323)
T 2isw_A 18 YGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDM--IYLKKLCEAALEKHPDIPICI 80 (323)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTT--HHHHHHHHHHHHHCTTSCEEE
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCH--HHHHHHHHHHHHhcCCCcEEE
Confidence 3344444455 7789999999999999999887653211110 1244555556666 8899887
No 249
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.67 E-value=1.8e+02 Score=20.35 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEe--eCChH--HHHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVG--CGDAK--DVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~--~g~~~--~~I~~~a~~~~~dllV~G~~~ 127 (173)
.+++-+.+.+++.| ..+..... .+++. ..+++.....++|-||+....
T Consensus 24 ~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 75 (289)
T 3brs_A 24 VLVEGAQMAAKEYE--IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAAD 75 (289)
T ss_dssp HHHHHHHHHHHHHT--CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSC
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 34555555566667 66555433 23443 345555566789998886544
No 250
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=24.63 E-value=2.1e+02 Score=20.95 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH---HHHHHHhh-cCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD---VICGTVEK-LEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~---~I~~~a~~-~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
.+.+-+.+.+++.| +.+......+++.. .|.+.... .++|-||+.. ....... .-+.+....+|
T Consensus 21 ~~~~g~~~~a~~~g--~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~~---------~~~~~~~~giP 88 (350)
T 3h75_A 21 SYSQFMQAAARDLG--LDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAPQ---------ILRLSQGSGIK 88 (350)
T ss_dssp HHHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHHH---------HHHHHTTSCCE
T ss_pred HHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHHH---------HHHHHHhCCCc
Confidence 34455555566667 77766655556543 33344444 6999998864 2222222 23445667778
Q ss_pred eeh
Q 030672 154 RLF 156 (173)
Q Consensus 154 vL~ 156 (173)
|++
T Consensus 89 vV~ 91 (350)
T 3h75_A 89 LFI 91 (350)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
No 251
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=24.59 E-value=1.8e+02 Score=20.32 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
++.+.+.+.+++.| ++++...... ....+.....++|+.++|+..
T Consensus 143 ~~a~~iq~~l~~iG--i~v~i~~~~~---~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 143 TVLEIYTRALERLG--IAAQIEKVDN---AQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHTTT--CCCEEEEECH---HHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHcC--CeeEEEecCH---HHHHHHhccCCccEEEecCCC
Confidence 44555666677778 7777776643 334445567789999998754
No 252
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.29 E-value=2.6e+02 Score=21.96 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=22.4
Q ss_pred EEEeeCChHHHHHHHHhhcCCCEEEEecCC
Q 030672 98 RVVGCGDAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 98 ~~~~~g~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
..+..+.-...+.+.+++.++|+++-++.+
T Consensus 366 ~~v~~~~d~~~l~~~i~~~~pDl~ig~~~~ 395 (458)
T 1mio_B 366 SKVKVEGDFFDVHQWIKNEGVDLLISNTYG 395 (458)
T ss_dssp CEEEESCBHHHHHHHHHHSCCSEEEESGGG
T ss_pred CEEEECCCHHHHHHHHHhcCCCEEEeCcch
Confidence 356666446668899999999999966553
No 253
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=24.04 E-value=69 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=31.6
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-ChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+..+.++.++ ++|+||+|.... +..-.. ++...+.+. ++++++|+++
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~--Llv~gi~~A-i~~s~A~kV~ 215 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPN--LLVPGICEA-IKQSTARKVY 215 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHH--HTSTTHHHH-HHHCCSEEEE
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhccc--ccCchHHHH-HHhCCCCEEE
Confidence 34678889998 899999996543 332221 445555555 5667777765
No 254
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.81 E-value=1.7e+02 Score=19.73 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=22.5
Q ss_pred HHHHHhcCCceEEEEEEeeCChHHHHHHH----HhhcCCCEEEEe
Q 030672 84 EAVYRNFQNNIHVKRVVGCGDAKDVICGT----VEKLEADTLVMG 124 (173)
Q Consensus 84 ~~~~~~~~~~v~~~~~~~~g~~~~~I~~~----a~~~~~dllV~G 124 (173)
.+.+++.| .++.......|-.+.|.+. +++.++|+||..
T Consensus 46 ~~~l~~~G--~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 46 KQLLIENG--HKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHCC--CEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 34455567 7766665555444444443 332359999873
No 255
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=23.78 E-value=59 Score=24.53 Aligned_cols=61 Identities=7% Similarity=-0.071 Sum_probs=39.3
Q ss_pred eEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcC-CCCCeeh
Q 030672 94 IHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPN-SQPSRLF 156 (173)
Q Consensus 94 v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~-~~~pvL~ 156 (173)
.-+=..-..+ ....+|++.|++.+..+|+-.+.+.....+. .++.........+ +.+||-+
T Consensus 17 yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~--~~~~~~v~~aa~~~~~VPVal 79 (307)
T 3n9r_A 17 YGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGI--DMAVGMVKIMCERYPHIPVAL 79 (307)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCH--HHHHHHHHHHHHHSTTSCEEE
T ss_pred ceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCH--HHHHHHHHHHHHhcCCCcEEE
Confidence 3344455555 7789999999999999999877653222110 2244444555554 7899887
No 256
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=23.59 E-value=2.2e+02 Score=20.88 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=37.6
Q ss_pred eEEEEEEeeCChHHHH--HHHHhhcCCCEEEEecCCCCh---hhhhhhhcccchHHHHhcCC---CCCeehhhH
Q 030672 94 IHVKRVVGCGDAKDVI--CGTVEKLEADTLVMGSHGYGF---IKRYKQLILAALSFQFLPNS---QPSRLFGDL 159 (173)
Q Consensus 94 v~~~~~~~~g~~~~~I--~~~a~~~~~dllV~G~~~~~~---~~~~~~~~~gs~~~~ll~~~---~~pvL~~~~ 159 (173)
+++-..+...+..+.| .+.+++.++|-+.+....... -.. +=..-..|...+ +.||++-..
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~-----l~~~f~~va~a~p~~~lPiilYn~ 141 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDG-----LFAWFSAVFSKIGKDARDILVYNI 141 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHH-----HHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHH-----HHHHHHHHHHhcCCCCCcEEEEEC
Confidence 6666555554555554 567889999999888765432 122 112234566677 789887443
No 257
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=23.50 E-value=1.5e+02 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=10.2
Q ss_pred CCCEEEEecCCC
Q 030672 117 EADTLVMGSHGY 128 (173)
Q Consensus 117 ~~dllV~G~~~~ 128 (173)
++|.||+|+.-.
T Consensus 71 ~aD~ii~gsP~y 82 (200)
T 2a5l_A 71 NCAGLALGSPTR 82 (200)
T ss_dssp TCSEEEEEEECB
T ss_pred HCCEEEEEcChh
Confidence 899999998654
No 258
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.34 E-value=1.4e+02 Score=18.35 Aligned_cols=22 Identities=9% Similarity=-0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcCCCEEEEecCC
Q 030672 106 KDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++.++.+++..+|+|++...-
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l 61 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGL 61 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTC
T ss_pred HHHHHHHhhcCCCCEEEEeCCC
Confidence 4555667778899999998653
No 259
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=23.02 E-value=96 Score=24.25 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred CCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 2 NTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 2 ~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
+.+.++|++++|.++. .++.|++. + +.+.+.|
T Consensus 61 ~~~V~~Vl~alD~t~~---Vv~eAi~~----g--adlIItH 92 (397)
T 2gx8_A 61 NKPVRHVLIALDVTEE---VVDEAIQL----G--ANVIIAH 92 (397)
T ss_dssp SSBCCEEEEESSCCHH---HHHHHHHH----T--CCEEEES
T ss_pred ccccCEEEEEEcCCHH---HHHHHHHC----C--CCEEEEC
No 260
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=22.97 E-value=1.9e+02 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=27.7
Q ss_pred cEEEEEecCChHHHHHHHHHHhh---cCCCCCCCeEEEEEE
Q 030672 6 RRVVVAVDESEESMHALSWCLNN---LFSPDTNNTLVLLYV 43 (173)
Q Consensus 6 ~~ILv~vd~s~~s~~al~~A~~l---a~~~~~~~~l~~l~v 43 (173)
++|+++.|++....+|...+... ....+ ..+.++..
T Consensus 207 ~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g--~~v~v~~l 245 (338)
T 1dd9_A 207 NNVICCYDGDRAGRDAAWRALETALPYMTDG--RQLRFMFL 245 (338)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHGGGCCTT--CEEEEEEE
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCC--CEEEEecC
Confidence 68999999999999999888886 34445 56665543
No 261
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.87 E-value=2.1e+02 Score=20.38 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~ 127 (173)
+.+-+.+.+++.| ..+......+++.. ..++.....++|-||+....
T Consensus 20 ~~~gi~~~a~~~g--~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 20 ETNVAKSEAEKRG--ITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp HHHHHHHHHHHHT--CEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHHcC--CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3444445555667 66655443345533 34555556789998886543
No 262
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.60 E-value=58 Score=21.78 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKP 45 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~ 45 (173)
..+.+++.++.|.++...++ +++.|+..| +++.++.-.+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~ 116 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIH-TAAKAKSLH--GIVAALTINP 116 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEESCT
T ss_pred CCCCEEEEEcCCCCcHHHHH-HHHHHHHCC--CEEEEEECCC
Confidence 45778999999988876655 556778878 8887775543
No 263
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=22.57 E-value=74 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=26.8
Q ss_pred CcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEE
Q 030672 5 ERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLY 42 (173)
Q Consensus 5 ~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~ 42 (173)
.++|++++.++-.+.++++....|.+ . .+++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~--~--g~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE--W--AEVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT--T--SEEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc--C--CCEEEEE
Confidence 47999999999999888888888855 2 3666653
No 264
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=22.34 E-value=2.3e+02 Score=20.56 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCceEEEEEEeeCCh---HHHHHHHHhhcCCCEEEEec
Q 030672 80 MNRAEAVYRNFQNNIHVKRVVGCGDA---KDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 80 l~~~~~~~~~~~~~v~~~~~~~~g~~---~~~I~~~a~~~~~dllV~G~ 125 (173)
.+++.+.+.+.| +...+.-+-| .+.+.+.+++++.+++.+-+
T Consensus 105 ~e~F~~~~~~aG----vdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lva 149 (252)
T 3tha_A 105 LEKFVKKAKSLG----ICALIVPELSFEESDDLIKECERYNIALITLVS 149 (252)
T ss_dssp HHHHHHHHHHTT----EEEEECTTCCGGGCHHHHHHHHHTTCEECEEEE
T ss_pred HHHHHHHHHHcC----CCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 455555555666 4444444422 34445556666666655544
No 265
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=22.25 E-value=1.8e+02 Score=19.49 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHh-cCC-ceEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ec--CCCChhhhhhhhcccchHHHH
Q 030672 74 ESVNSVMNRAEAVYRN-FQN-NIHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GS--HGYGFIKRYKQLILAALSFQF 146 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~-~~~-~v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~--~~~~~~~~~~~~~~gs~~~~l 146 (173)
....++++-+.+.+.+ .|. ...++..-+-| ...-.+-+.++..++|-+|. |. +|.+.-.. ..-..+++-|
T Consensus 30 ~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd---~Va~~v~~Gl 106 (159)
T 1kz1_A 30 QAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGSTMHFE---YISEAVVHGL 106 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSSSHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHH---HHHHHHHHHH
Confidence 4456677777777777 662 12345555556 33455556677778887765 64 35554433 2344455544
Q ss_pred h---cCCCCCeehhhH---HHHHHhhc
Q 030672 147 L---PNSQPSRLFGDL---ILFQILQG 167 (173)
Q Consensus 147 l---~~~~~pvL~~~~---~~~~~~~~ 167 (173)
+ -...+||.+|=+ ...|-+.+
T Consensus 107 ~~v~L~~~vPV~~GVLT~~~~eQA~~R 133 (159)
T 1kz1_A 107 MRVGLDSGVPVILGLLTVLNEEQALYR 133 (159)
T ss_dssp HHHHHHHCCCEEEEEEEESSHHHHHHH
T ss_pred HHHHhhcCCCEEEEEeCCCCHHHHHHH
Confidence 3 357899988522 34555544
No 266
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=22.23 E-value=59 Score=18.64 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 1 MNTNERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 1 m~~~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
|+.-+|.|=+.=.-....++|++-|+.-|.+.- -.|.-+.|.+.
T Consensus 1 m~~vyKviElvGsS~~S~edAi~nAi~~AskTl--~ni~~~eV~e~ 44 (69)
T 2ux9_A 1 MGKVYKKVELVGTSEEGLEAAIQAALARARKTL--RHLDWFEVKEI 44 (69)
T ss_dssp -CCCEEEEEEEEEESSCHHHHHHHHHHHHHHHC--CCEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCCHHHHHHHHHHHHHhcc--cCCeEEEEEEE
Confidence 666677774444444556788888888888766 57777777654
No 267
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=21.94 E-value=1.1e+02 Score=21.38 Aligned_cols=39 Identities=5% Similarity=-0.022 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCCEEEEecCCCChhhhhhhhcccchHHHHhcCCCCC
Q 030672 106 KDVICGTVEKLEADTLVMGSHGYGFIKRYKQLILAALSFQFLPNSQPS 153 (173)
Q Consensus 106 ~~~I~~~a~~~~~dllV~G~~~~~~~~~~~~~~~gs~~~~ll~~~~~p 153 (173)
...|++.|+++|.-+|.++..++-+.. ++-.++.+..++
T Consensus 138 ~~~Lld~A~~~naqvvll~~~~RqG~G---------nAl~vl~~agv~ 176 (189)
T 2l8b_A 138 TLTLLDGAARHNVQVLITDSGQRTGTG---------SALMAMKDAGVN 176 (189)
T ss_dssp HHHHHHHHHHTTCCEEEEESSTTTCSH---------HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCEEEEeCCcccccCC---------CHHHHHHhCCCc
Confidence 577889999999999999988765443 344555555444
No 268
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=21.77 E-value=1.9e+02 Score=19.33 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhcCCc-eEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ecC--CCChhhhhhhhcccchHHHHh
Q 030672 74 ESVNSVMNRAEAVYRNFQNN-IHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSH--GYGFIKRYKQLILAALSFQFL 147 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~~--~~~~~~~~~~~~~gs~~~~ll 147 (173)
....++++-+.+.+.+.|.. ..++..-+-| ...-.+-+.++..++|-+|. |.- |.+.-.. ..-..++.-|+
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~Hfd---~Va~~vs~gl~ 101 (154)
T 1hqk_A 25 ALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFD---YIASEVSKGLA 101 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHH---HHHHHHHHHHH
Confidence 45567788888888888721 2345555556 44455556677778887765 654 5554444 23444555443
Q ss_pred ---cCCCCCeehh---hHHHHHHhhcc
Q 030672 148 ---PNSQPSRLFG---DLILFQILQGS 168 (173)
Q Consensus 148 ---~~~~~pvL~~---~~~~~~~~~~~ 168 (173)
-...+||.+| .-...|-+.+.
T Consensus 102 ~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1hqk_A 102 NLSLELRKPITFGVITADTLEQAIERA 128 (154)
T ss_dssp HHHHHHTSCEEEEEEEESSHHHHHHHE
T ss_pred HHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 3578999987 22355655543
No 269
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.72 E-value=2.4e+02 Score=20.69 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEee--C------ChHHHHHHHHh---hcCCCEEEEec-CCCChhhhhhhhcccchHHH
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGC--G------DAKDVICGTVE---KLEADTLVMGS-HGYGFIKRYKQLILAALSFQ 145 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~--g------~~~~~I~~~a~---~~~~dllV~G~-~~~~~~~~~~~~~~gs~~~~ 145 (173)
+...+..+.+++.| +.++..+.. | ...+.+.++++ +.++|.|.++. .|...... .......
T Consensus 124 ~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~-----~~~lv~~ 196 (302)
T 2ftp_A 124 ERFVPVLEAARQHQ--VRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGA-----TRRLIEA 196 (302)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHH-----HHHHHHH
Confidence 34445556667778 777655543 2 23456666655 99999999983 34332222 3344556
Q ss_pred HhcCCC-CCeeh
Q 030672 146 FLPNSQ-PSRLF 156 (173)
Q Consensus 146 ll~~~~-~pvL~ 156 (173)
+..+.+ +|+-+
T Consensus 197 l~~~~~~~~l~~ 208 (302)
T 2ftp_A 197 VASEVPRERLAG 208 (302)
T ss_dssp HTTTSCGGGEEE
T ss_pred HHHhCCCCeEEE
Confidence 656553 66655
No 270
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=21.61 E-value=1.4e+02 Score=21.99 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCCh------------HHHHHHHHhhcCCCEEEEecCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDA------------KDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~------------~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+.+.+++.| .+++..-+.+-+ ...+.+.+. .+|.||+++.-+
T Consensus 77 La~~~~~~l~~~G--~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aSP~Y 134 (279)
T 2fzv_A 77 AVEEAARLLQFFG--AETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCSPER 134 (279)
T ss_dssp HHHHHHHHHHHTT--CEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEEEEE
T ss_pred HHHHHHHHHhhCC--CEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEcCcc
Confidence 3444444444456 665554443322 466777777 899999998654
No 271
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.61 E-value=62 Score=21.59 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPPL 47 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~ 47 (173)
..+.+++.++.|.++...++ +++.|+..| +++.++.-.+..
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g--~~vi~iT~~~~s 149 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLE-ALKKAKELN--MLCLGLSGKGGG 149 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEEEGGGT
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCCCCc
Confidence 45789999999888876654 556677778 888888665443
No 272
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=21.48 E-value=2.3e+02 Score=21.32 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCCEEEEecCCC
Q 030672 79 VMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 79 ~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~dllV~G~~~~ 128 (173)
+.+.+.+.+.+.| ++++..-........+.+... ++|.+|+|+...
T Consensus 268 lA~~ia~~l~~~g--~~v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~y 313 (398)
T 1ycg_A 268 MAHALMDGLVAGG--CEVKLFKLSVSDRNDVIKEIL--DARAVLVGSPTI 313 (398)
T ss_dssp HHHHHHHHHHHTT--CEEEEEEGGGSCHHHHHHHHH--HCSEEEEECCCB
T ss_pred HHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHH--HCCEEEEECCcc
Confidence 4444444555556 666555444444555555555 789999998654
No 273
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.43 E-value=2.1e+02 Score=19.93 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChH--HHHHHHHhhcCCCEEEEecCCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAK--DVICGTVEKLEADTLVMGSHGY 128 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~--~~I~~~a~~~~~dllV~G~~~~ 128 (173)
..+++-+.+.+++.| ..+......++.. ..+++.....++|-||+.....
T Consensus 23 ~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 23 TELFKGISSILESRG--YIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp HHHHHHHHHHHHTTT--CEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 345666666777777 7666655555543 3456667778899988876543
No 274
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.32 E-value=2.2e+02 Score=20.12 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeC-ChHHHHHHHHhhcCCCEEEEecCC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCG-DAKDVICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g-~~~~~I~~~a~~~~~dllV~G~~~ 127 (173)
.++++-+.+.+.+.| ..+......+ .....+.+.....++|-||+....
T Consensus 26 ~~~~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 26 LEMISWIGIELGKRG--LDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp HHHHHHHHHHHHHTT--CEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC
T ss_pred HHHHHHHHHHHHHCC--CEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC
Confidence 345555666666777 6666554443 345677788888899999886544
No 275
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=21.31 E-value=1.2e+02 Score=24.50 Aligned_cols=80 Identities=8% Similarity=0.081 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
..+++.+++|+++|.+.+. .+|+++|=..-.... ..-+.+.+.+.++++. ++.
T Consensus 165 ~~ieRIar~AFe~A~~r~r-kkVT~V~KaNVlk~s-------------------------dGlfr~v~~eVa~eYP-dI~ 217 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGR-KKVHCATKSNIMKLA-------------------------EGTLKRAFEQVAQEYP-DIE 217 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CEEEEEECTTTCTTH-------------------------HHHHHHHHHHHHTTCT-TSE
T ss_pred HHHHHHHHHHHHHHHhcCC-CcEEEEECCCchhhH-------------------------HHHHHHHHHHHHHHCC-Cce
Confidence 4578999999999998732 678888764432211 0123444555555564 577
Q ss_pred EEEEEeeCChHHHHHHHHhhcCCCEEEEec
Q 030672 96 VKRVVGCGDAKDVICGTVEKLEADTLVMGS 125 (173)
Q Consensus 96 ~~~~~~~g~~~~~I~~~a~~~~~dllV~G~ 125 (173)
++...+. +..-.++.-= ..+|.||...
T Consensus 218 ~e~~~VD-~~amqLV~~P--~~FDVIVt~N 244 (496)
T 2d1c_A 218 AVHIIVD-NAAHQLVKRP--EQFEVIVTTN 244 (496)
T ss_dssp EEEEEHH-HHHHHHHHCG--GGCSEEEECH
T ss_pred EEEEeHH-HHHHHHhhCc--CcceEEEECC
Confidence 6665443 3333333333 3778777764
No 276
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=21.29 E-value=1.9e+02 Score=19.25 Aligned_cols=60 Identities=5% Similarity=-0.104 Sum_probs=37.7
Q ss_pred cCCceEEEEEEeeCC-hHHHHHHHHhhcCCCEEEEecC--CCChhhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 90 FQNNIHVKRVVGCGD-AKDVICGTVEKLEADTLVMGSH--GYGFIKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 90 ~~~~v~~~~~~~~g~-~~~~I~~~a~~~~~dllV~G~~--~~~~~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.| ++++....... -...|.+.+++..+|+||--.. +...-.. -|....+..-.-.+|++-
T Consensus 56 ~G--l~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~-----D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 56 TG--MNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDP-----DVKALLRLATVWNIPVAT 118 (152)
T ss_dssp HC--CCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHH-----HHHHHHHHHHHTTCCEES
T ss_pred hC--ceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccc-----cHHHHHHHHHHcCCCEEe
Confidence 55 77766543211 2357999999999999999876 4332122 344455555566777765
No 277
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=21.25 E-value=2.4e+02 Score=20.43 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Q 030672 16 EESMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH 95 (173)
Q Consensus 16 ~~s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 95 (173)
+...+.++.++++|+..| ++..+++-.+. . .. +...+...+.++++.+.++++| +.
T Consensus 104 ~~~~~~~~~~i~~A~~lG--~~~v~~~~~~~---~---------~~--------~~~~~~~~~~l~~l~~~a~~~G--v~ 159 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLG--CKYLIQPMMPT---I---------TT--------HDEAKLVCDIFNQASDVIKAEG--IA 159 (303)
T ss_dssp HHHHHHHHHHHHHHHHTT--CSEEEECSCCC---C---------CS--------HHHHHHHHHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEECCCCC---C---------CC--------HHHHHHHHHHHHHHHHHHHHCC--Cc
Confidence 345678889999999999 88776642111 0 00 1122445667778888888888 66
Q ss_pred --EEEE
Q 030672 96 --VKRV 99 (173)
Q Consensus 96 --~~~~ 99 (173)
+-.+
T Consensus 160 ~~l~~E 165 (303)
T 3l23_A 160 TGFGYH 165 (303)
T ss_dssp TCEEEE
T ss_pred ceEEEc
Confidence 5544
No 278
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.10 E-value=2.2e+02 Score=19.96 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeeCChHH--HHHHHHhhcCCCEEEEecCC
Q 030672 78 SVMNRAEAVYRNFQNNIHVKRVVGCGDAKD--VICGTVEKLEADTLVMGSHG 127 (173)
Q Consensus 78 ~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~--~I~~~a~~~~~dllV~G~~~ 127 (173)
.+++-+.+.+++.| ..+......+++.. ..++.....++|-||+....
T Consensus 19 ~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 19 VLAETAKQRAEQLG--YEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp HHHHHHHHHHHHTT--CEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHHHcC--CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 34555555566677 66655444445543 34455556789988886443
No 279
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=21.00 E-value=61 Score=24.80 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=31.0
Q ss_pred ChHHHHHHHHhhcCCCEEEEecCCC-Ch-hhhhhhhcccchHHHHhcCCCCCeeh
Q 030672 104 DAKDVICGTVEKLEADTLVMGSHGY-GF-IKRYKQLILAALSFQFLPNSQPSRLF 156 (173)
Q Consensus 104 ~~~~~I~~~a~~~~~dllV~G~~~~-~~-~~~~~~~~~gs~~~~ll~~~~~pvL~ 156 (173)
.+..+.++.++ ++|+||+|.... +. ... ++...+.+. ++++++|+++
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~---Llv~gi~~A-i~~s~A~kV~ 225 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPN---LTIGNIGRA-VCESDAEVVY 225 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHH---HSSHHHHHH-HHHCSSEEEE
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhccc---ccCccHHHH-HHhCCCCEEE
Confidence 44677888888 899999996543 32 333 445555555 5667777765
No 280
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=20.72 E-value=2.5e+02 Score=20.44 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.4
Q ss_pred HHHhcCCCCCeehh
Q 030672 144 FQFLPNSQPSRLFG 157 (173)
Q Consensus 144 ~~ll~~~~~pvL~~ 157 (173)
.++-..+..||++|
T Consensus 199 ~~vr~~~~~pv~vG 212 (267)
T 3vnd_A 199 TQLAEFNAPPPLLG 212 (267)
T ss_dssp HHHHTTTCCCEEEC
T ss_pred HHHHHhcCCCEEEE
Confidence 33334467888874
No 281
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=20.67 E-value=70 Score=23.33 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEEEEeeCChHHHHHHHHhhcCCCEEEEe
Q 030672 95 HVKRVVGCGDAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 95 ~~~~~~~~g~~~~~I~~~a~~~~~dllV~G 124 (173)
+++.....=++..++++.|.+.++|+||.=
T Consensus 37 ~V~~I~~alD~t~~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 37 GIQRVMVALDIREETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp BCSEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred ccCEEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 344444444889999999999999999863
No 282
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=20.59 E-value=2.2e+02 Score=19.81 Aligned_cols=80 Identities=8% Similarity=-0.116 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIHVK 97 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 97 (173)
+...++.++++|+..| ++...++.-..+... .. .+...+...+.++++.+.++++| +.+-
T Consensus 81 ~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~~---------~~-------~~~~~~~~~~~l~~l~~~a~~~g--v~l~ 140 (275)
T 3qc0_A 81 AIDDNRRAVDEAAELG--ADCLVLVAGGLPGGS---------KN-------IDAARRMVVEGIAAVLPHARAAG--VPLA 140 (275)
T ss_dssp HHHHHHHHHHHHHHTT--CSCEEEECBCCCTTC---------CC-------HHHHHHHHHHHHHHHHHHHHHHT--CCEE
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEeeCCCCCCC---------cC-------HHHHHHHHHHHHHHHHHHHHHcC--CEEE
Confidence 3467788888888889 888877753221110 00 01223445566777777888888 6666
Q ss_pred EEEee---------CChHHHHHHHHhhcC
Q 030672 98 RVVGC---------GDAKDVICGTVEKLE 117 (173)
Q Consensus 98 ~~~~~---------g~~~~~I~~~a~~~~ 117 (173)
.+... .+..+.+.+.+++.+
T Consensus 141 lE~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (275)
T 3qc0_A 141 IEPLHPMYAADRACVNTLGQALDICETLG 169 (275)
T ss_dssp ECCCCGGGTTTTBSCCCHHHHHHHHHHHC
T ss_pred EeECCCcccCCccccCCHHHHHHHHHHhC
Confidence 55431 123455666666544
No 283
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=20.40 E-value=2e+02 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeeCChHHHHHHHHhhcCCC--EEEEecC
Q 030672 77 NSVMNRAEAVYRNFQNNIHVKRVVGCGDAKDVICGTVEKLEAD--TLVMGSH 126 (173)
Q Consensus 77 ~~~l~~~~~~~~~~~~~v~~~~~~~~g~~~~~I~~~a~~~~~d--llV~G~~ 126 (173)
++.+..+.+..++.| .++.++...+....+.++..++.++| -+|+|..
T Consensus 192 ~k~frA~a~aa~etG--~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~ 241 (360)
T 3tn4_A 192 KMFFRAAARAQKETG--AVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHM 241 (360)
T ss_dssp HHHHHHHHHHHHHHC--CEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCG
T ss_pred HHHHHHHHHHHHHhC--CcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcC
Confidence 456666667777788 99999998886554555666677665 5888763
No 284
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=20.40 E-value=78 Score=23.48 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=19.1
Q ss_pred CChHHHHHHHHhhcCCCEEEEe
Q 030672 103 GDAKDVICGTVEKLEADTLVMG 124 (173)
Q Consensus 103 g~~~~~I~~~a~~~~~dllV~G 124 (173)
=|+...++..|.+.++|+||-=
T Consensus 45 LD~t~~vv~eA~~~g~dlIItH 66 (278)
T 3rxy_A 45 IDIGPAELLLARQLGCDGVIAH 66 (278)
T ss_dssp SSCCHHHHHHHHHTTCSEEEES
T ss_pred ECCCHHHHHHHHHcCCCEEEEC
Confidence 3889999999999999998753
No 285
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=20.24 E-value=2e+02 Score=19.16 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhcCCc-eEEEEEEeeC--ChHHHHHHHHhhcCCCEEEE-ecC--CCChhhhhhhhcccchHHHHh
Q 030672 74 ESVNSVMNRAEAVYRNFQNN-IHVKRVVGCG--DAKDVICGTVEKLEADTLVM-GSH--GYGFIKRYKQLILAALSFQFL 147 (173)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~-v~~~~~~~~g--~~~~~I~~~a~~~~~dllV~-G~~--~~~~~~~~~~~~~gs~~~~ll 147 (173)
....++++-+.+.+.+.|.. ..++..-+-| ...-.+-+.++..++|-+|. |.- |.+.-.. ..-..++.-|+
T Consensus 25 ~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd---~V~~~vs~Gl~ 101 (154)
T 1rvv_A 25 FITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYD---YVCNEAAKGIA 101 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHH---HHHHHHHHHHH
Confidence 45567888888888888721 2345555556 44455556677778887765 653 5554444 23444555443
Q ss_pred ---cCCCCCeehh---hHHHHHHhhcc
Q 030672 148 ---PNSQPSRLFG---DLILFQILQGS 168 (173)
Q Consensus 148 ---~~~~~pvL~~---~~~~~~~~~~~ 168 (173)
-...+||.+| .-...|-+.+.
T Consensus 102 ~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1rvv_A 102 QAANTTGVPVIFGIVTTENIEQAIERA 128 (154)
T ss_dssp HHHHHHCSCEEEEEEEESSHHHHHHTE
T ss_pred HHHhhhCCCEEEEecCCCCHHHHHHHh
Confidence 3578999987 33456665543
No 286
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=20.11 E-value=2.2e+02 Score=20.62 Aligned_cols=83 Identities=6% Similarity=-0.119 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEEeCCCCCCCCcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-E
Q 030672 18 SMHALSWCLNNLFSPDTNNTLVLLYVKPPLPVHSSFDAAGYIFSNDVIKAVEKYASESVNSVMNRAEAVYRNFQNNIH-V 96 (173)
Q Consensus 18 s~~al~~A~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~-~ 96 (173)
+.+.++.++++|+..| ++..+++....... .... ....+...+...+.+.++.+.+++.| +. +
T Consensus 112 ~~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~---------~~~~---~~~~~~~~~~~~~~l~~l~~~a~~~G--v~~l 175 (316)
T 3qxb_A 112 GYQHLKRAIDMTAAME--VPATGMPFGSYSAA---------DALN---PARREEIYAIARDMWIELAAYAKRQG--LSML 175 (316)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEEECCBBCCHH---------HHTC---HHHHHHHHHHHHHHHHHHHHHHHHHT--CCEE
T ss_pred HHHHHHHHHHHHHHcC--CCEEEecCCCcCcc---------ccCC---cccHHHHHHHHHHHHHHHHHHHHhcC--CeEE
Confidence 3456788889999889 88776543220000 0000 01112223445666777777788888 66 5
Q ss_pred EEEE--ee---CChHHHHHHHHhhc
Q 030672 97 KRVV--GC---GDAKDVICGTVEKL 116 (173)
Q Consensus 97 ~~~~--~~---g~~~~~I~~~a~~~ 116 (173)
-.+. .. ++..+.+.++++..
T Consensus 176 ~lE~~~~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 176 YVEPVPLATEFPSSAADAARLMADL 200 (316)
T ss_dssp EECCCSCTTBSSCSHHHHHHHHHHH
T ss_pred EEEecCCccccCCCHHHHHHHHHHH
Confidence 5544 22 23345555555543
No 287
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.10 E-value=82 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhhcCCCCCCCeEEEEEEeCC
Q 030672 4 NERRVVVAVDESEESMHALSWCLNNLFSPDTNNTLVLLYVKPP 46 (173)
Q Consensus 4 ~~~~ILv~vd~s~~s~~al~~A~~la~~~~~~~~l~~l~v~~~ 46 (173)
..+.+++.++.|.++...++ +++.|+..| +++.++.-.+.
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~-~~~~ak~~g--~~vI~IT~~~~ 154 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILA-AFREAKAKG--MTCVGFTGNRG 154 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CeEEEEECCCC
Confidence 45789999999888876664 556678778 88887765443
No 288
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=20.00 E-value=26 Score=25.70 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.2
Q ss_pred HHhcCCCCCeehh
Q 030672 145 QFLPNSQPSRLFG 157 (173)
Q Consensus 145 ~ll~~~~~pvL~~ 157 (173)
-+.-|+|+|||+|
T Consensus 204 ~i~Ph~pdPVL~G 216 (252)
T 3u02_A 204 LITPHGKDPVLVG 216 (252)
T ss_dssp EECCCTTCSEEEE
T ss_pred EEecCCCCCEEEE
Confidence 4577899999983
Done!