Query 030674
Match_columns 173
No_of_seqs 114 out of 1292
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-42 4.1E-47 271.9 17.4 166 1-166 232-397 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 7.4E-39 1.6E-43 266.9 13.8 168 2-172 516-686 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-36 2.3E-41 252.2 15.2 162 2-166 593-774 (802)
4 KOG0734 AAA+-type ATPase conta 100.0 9.9E-37 2.1E-41 249.4 14.4 159 2-163 385-543 (752)
5 KOG0727 26S proteasome regulat 100.0 6.8E-35 1.5E-39 221.0 15.5 173 1-173 236-408 (408)
6 PTZ00454 26S protease regulato 100.0 4.2E-34 9.2E-39 233.6 17.8 172 2-173 227-398 (398)
7 KOG0736 Peroxisome assembly fa 100.0 1.2E-34 2.6E-39 244.7 14.2 170 2-172 753-944 (953)
8 KOG0738 AAA+-type ATPase [Post 100.0 1E-34 2.3E-39 230.1 11.0 168 1-172 292-481 (491)
9 KOG0652 26S proteasome regulat 100.0 2.4E-33 5.1E-38 213.5 12.7 172 1-172 252-423 (424)
10 KOG0728 26S proteasome regulat 100.0 7.6E-33 1.7E-37 209.7 14.1 165 1-165 228-392 (404)
11 COG0465 HflB ATP-dependent Zn 100.0 1.3E-32 2.8E-37 231.0 14.9 161 2-162 231-391 (596)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-33 1.3E-37 230.0 12.2 140 2-144 271-414 (802)
13 PRK03992 proteasome-activating 100.0 9.3E-32 2E-36 220.1 18.2 167 2-168 213-379 (389)
14 KOG0731 AAA+-type ATPase conta 100.0 3.7E-32 8E-37 232.1 15.8 161 2-162 392-554 (774)
15 KOG0726 26S proteasome regulat 100.0 8.2E-33 1.8E-37 213.0 10.5 167 1-167 266-432 (440)
16 CHL00195 ycf46 Ycf46; Provisio 100.0 8.9E-32 1.9E-36 224.4 16.0 164 2-170 307-472 (489)
17 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-31 6.7E-36 232.0 15.8 164 2-167 535-716 (733)
18 TIGR01241 FtsH_fam ATP-depende 100.0 9.6E-31 2.1E-35 220.1 16.9 162 2-163 136-297 (495)
19 PRK10733 hflB ATP-dependent me 100.0 1.1E-30 2.4E-35 225.1 17.4 163 2-164 233-395 (644)
20 PTZ00361 26 proteosome regulat 100.0 8.4E-31 1.8E-35 215.8 14.9 163 2-164 265-427 (438)
21 COG0464 SpoVK ATPases of the A 100.0 1.2E-30 2.6E-35 219.6 15.6 162 2-166 324-488 (494)
22 COG1223 Predicted ATPase (AAA+ 100.0 7.2E-31 1.6E-35 199.4 12.2 161 2-166 199-360 (368)
23 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.3E-30 5E-35 234.9 15.3 154 2-164 1721-1880(2281)
24 CHL00176 ftsH cell division pr 100.0 7.1E-30 1.5E-34 218.8 15.9 160 2-161 264-423 (638)
25 KOG0729 26S proteasome regulat 100.0 1.5E-30 3.4E-35 198.7 9.3 165 1-165 258-422 (435)
26 KOG0735 AAA+-type ATPase [Post 100.0 1.3E-29 2.8E-34 213.1 14.5 140 2-144 749-888 (952)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.1E-28 2.3E-33 200.7 17.6 160 2-161 204-363 (364)
28 KOG0739 AAA+-type ATPase [Post 100.0 1.1E-29 2.4E-34 196.2 6.8 160 1-165 213-420 (439)
29 KOG0737 AAA+-type ATPase [Post 100.0 8.9E-28 1.9E-32 189.8 12.1 159 1-164 174-362 (386)
30 KOG0730 AAA+-type ATPase [Post 99.9 4.6E-27 1E-31 196.6 13.2 158 2-169 266-424 (693)
31 KOG0740 AAA+-type ATPase [Post 99.9 1.4E-26 3.1E-31 188.0 9.2 167 1-172 233-416 (428)
32 KOG0651 26S proteasome regulat 99.9 2.8E-26 6.1E-31 177.9 6.3 162 1-162 213-374 (388)
33 TIGR03689 pup_AAA proteasome A 99.9 2.5E-24 5.3E-29 180.0 15.9 161 2-164 274-481 (512)
34 KOG0732 AAA+-type ATPase conta 99.9 6.3E-25 1.4E-29 192.5 12.4 164 2-168 352-532 (1080)
35 KOG0741 AAA+-type ATPase [Post 99.9 2.8E-25 6E-30 182.3 6.8 163 2-165 305-494 (744)
36 TIGR01243 CDC48 AAA family ATP 99.9 1.6E-23 3.5E-28 183.5 16.2 163 2-167 260-441 (733)
37 PLN00020 ribulose bisphosphate 99.9 3.1E-22 6.8E-27 159.9 13.1 138 1-144 195-354 (413)
38 KOG0735 AAA+-type ATPase [Post 99.8 2.3E-20 5E-25 157.8 11.9 170 1-171 482-658 (952)
39 KOG0742 AAA+-type ATPase [Post 99.8 1E-18 2.2E-23 140.6 12.5 155 2-162 431-613 (630)
40 KOG0736 Peroxisome assembly fa 99.7 2.9E-17 6.3E-22 140.1 12.0 158 2-165 479-657 (953)
41 COG0464 SpoVK ATPases of the A 99.6 2.9E-14 6.3E-19 120.4 16.1 159 2-164 65-229 (494)
42 KOG0743 AAA+-type ATPase [Post 99.6 2E-15 4.4E-20 122.8 8.7 120 13-134 286-413 (457)
43 PF00004 AAA: ATPase family as 99.5 9.7E-14 2.1E-18 96.6 7.9 85 2-90 46-132 (132)
44 KOG0744 AAA+-type ATPase [Post 99.4 2.1E-13 4.5E-18 107.2 6.1 157 2-162 234-415 (423)
45 PRK11034 clpA ATP-dependent Cl 99.1 4.8E-10 1E-14 98.7 11.7 150 2-163 267-435 (758)
46 TIGR02639 ClpA ATP-dependent C 99.0 1.3E-09 2.8E-14 96.2 10.0 149 2-162 263-430 (731)
47 CHL00181 cbbX CbbX; Provisiona 99.0 5E-09 1.1E-13 82.9 12.2 122 13-144 122-257 (287)
48 PRK00080 ruvB Holliday junctio 98.9 1.4E-08 3.1E-13 81.7 11.1 102 59-163 150-252 (328)
49 TIGR02928 orc1/cdc6 family rep 98.9 3.3E-08 7.2E-13 80.3 13.0 146 3-162 118-275 (365)
50 TIGR00635 ruvB Holliday juncti 98.9 1.7E-08 3.6E-13 80.3 11.0 100 59-161 129-229 (305)
51 TIGR02880 cbbX_cfxQ probable R 98.9 1.5E-08 3.3E-13 80.1 10.5 130 3-144 114-256 (284)
52 TIGR00763 lon ATP-dependent pr 98.9 1.1E-08 2.3E-13 90.9 9.8 142 3-158 405-583 (775)
53 TIGR02902 spore_lonB ATP-depen 98.9 1.7E-08 3.6E-13 86.2 10.5 97 60-161 235-332 (531)
54 TIGR02881 spore_V_K stage V sp 98.9 5.3E-08 1.2E-12 76.0 12.2 129 3-144 98-241 (261)
55 PRK00411 cdc6 cell division co 98.8 1E-07 2.2E-12 78.3 13.2 138 13-163 138-284 (394)
56 TIGR00362 DnaA chromosomal rep 98.8 3.3E-08 7.2E-13 81.8 10.0 135 13-163 199-339 (405)
57 PRK00149 dnaA chromosomal repl 98.8 4.3E-08 9.3E-13 82.2 9.0 134 13-162 211-350 (450)
58 TIGR03345 VI_ClpV1 type VI sec 98.7 8.6E-08 1.9E-12 85.8 10.9 144 2-158 268-428 (852)
59 PRK14088 dnaA chromosomal repl 98.6 2.7E-07 5.9E-12 77.1 9.2 134 13-162 194-333 (440)
60 PTZ00112 origin recognition co 98.6 5.4E-07 1.2E-11 79.9 10.9 145 2-162 856-1007(1164)
61 PRK14961 DNA polymerase III su 98.6 9.2E-07 2E-11 72.2 11.8 121 15-159 121-242 (363)
62 PRK06893 DNA replication initi 98.6 7E-07 1.5E-11 68.4 10.2 132 13-158 91-227 (229)
63 TIGR02397 dnaX_nterm DNA polym 98.5 1.3E-06 2.8E-11 70.8 10.6 133 2-158 102-239 (355)
64 PRK06645 DNA polymerase III su 98.5 2.1E-06 4.6E-11 72.8 11.6 137 2-159 113-254 (507)
65 PRK08727 hypothetical protein; 98.5 2.5E-06 5.3E-11 65.6 10.3 133 13-161 93-231 (233)
66 PRK14956 DNA polymerase III su 98.4 2.8E-06 6.1E-11 71.3 11.1 122 13-158 121-243 (484)
67 PRK10865 protein disaggregatio 98.4 5.2E-07 1.1E-11 81.0 7.3 93 2-107 259-357 (857)
68 TIGR03346 chaperone_ClpB ATP-d 98.4 4.9E-07 1.1E-11 81.3 6.7 111 2-125 254-375 (852)
69 PRK14087 dnaA chromosomal repl 98.4 2E-06 4.3E-11 72.2 9.7 134 13-162 206-349 (450)
70 PRK14962 DNA polymerase III su 98.4 2.9E-06 6.3E-11 71.5 10.5 136 2-161 102-242 (472)
71 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.8E-06 3.9E-11 65.5 8.1 129 14-158 91-225 (226)
72 PRK14951 DNA polymerase III su 98.4 5.8E-06 1.3E-10 71.6 12.0 132 2-158 109-246 (618)
73 PRK07940 DNA polymerase III su 98.4 2.1E-06 4.5E-11 70.9 8.9 109 2-133 102-214 (394)
74 PRK14958 DNA polymerase III su 98.4 3.7E-06 8.1E-11 71.5 10.7 122 15-160 121-243 (509)
75 PRK14086 dnaA chromosomal repl 98.4 3.8E-06 8.2E-11 72.4 10.6 135 12-163 376-517 (617)
76 PRK07003 DNA polymerase III su 98.4 4.6E-06 1E-10 73.2 10.9 118 2-139 104-226 (830)
77 TIGR03015 pepcterm_ATPase puta 98.4 1.2E-05 2.6E-10 62.6 12.3 136 10-162 120-267 (269)
78 PRK07994 DNA polymerase III su 98.3 7.3E-06 1.6E-10 71.3 11.7 121 14-158 120-241 (647)
79 PRK05563 DNA polymerase III su 98.3 8.8E-06 1.9E-10 70.0 12.1 133 2-158 104-241 (559)
80 PRK12422 chromosomal replicati 98.3 3.1E-06 6.7E-11 70.9 9.0 135 13-162 202-344 (445)
81 PRK12323 DNA polymerase III su 98.3 5E-06 1.1E-10 72.0 9.3 106 14-139 125-231 (700)
82 PRK08691 DNA polymerase III su 98.3 8E-06 1.7E-10 71.2 10.4 135 2-160 104-243 (709)
83 PRK08084 DNA replication initi 98.3 4.1E-06 8.9E-11 64.5 7.8 129 15-159 99-234 (235)
84 CHL00095 clpC Clp protease ATP 98.3 5.2E-06 1.1E-10 74.5 9.1 127 2-141 260-401 (821)
85 PRK12402 replication factor C 98.2 3E-05 6.6E-10 62.2 12.6 122 14-160 126-248 (337)
86 PRK14960 DNA polymerase III su 98.2 1.3E-05 2.8E-10 69.6 10.6 122 14-159 119-241 (702)
87 PRK13342 recombination factor 98.2 2.7E-05 6E-10 64.7 12.2 134 2-162 77-220 (413)
88 PRK14964 DNA polymerase III su 98.2 1.6E-05 3.5E-10 67.2 10.8 133 2-158 101-238 (491)
89 PRK08451 DNA polymerase III su 98.2 1.8E-05 3.8E-10 67.6 10.5 120 15-158 119-239 (535)
90 PRK14969 DNA polymerase III su 98.2 2.6E-05 5.7E-10 66.7 11.2 133 2-159 104-242 (527)
91 PRK10787 DNA-binding ATP-depen 98.2 1.6E-05 3.5E-10 70.8 10.0 131 15-159 418-580 (784)
92 PRK14970 DNA polymerase III su 98.1 4.2E-05 9.2E-10 62.5 11.7 133 2-158 93-230 (367)
93 PRK14965 DNA polymerase III su 98.1 2.3E-05 5E-10 67.7 10.2 131 2-157 104-240 (576)
94 PRK14963 DNA polymerase III su 98.1 7.6E-05 1.6E-09 63.5 12.8 122 13-159 116-238 (504)
95 PRK07764 DNA polymerase III su 98.1 3.1E-05 6.8E-10 69.3 10.8 105 14-138 121-226 (824)
96 PRK09111 DNA polymerase III su 98.1 5.2E-05 1.1E-09 65.7 11.8 134 2-159 117-255 (598)
97 PRK04132 replication factor C 98.1 6.1E-05 1.3E-09 67.4 12.3 116 2-137 613-735 (846)
98 PRK04195 replication factor C 98.1 6.9E-05 1.5E-09 63.5 12.0 123 13-158 98-222 (482)
99 PRK14953 DNA polymerase III su 98.1 7E-05 1.5E-09 63.5 11.7 133 2-158 104-241 (486)
100 PRK09087 hypothetical protein; 98.1 2.2E-05 4.8E-10 60.1 8.0 128 15-161 89-222 (226)
101 PRK14949 DNA polymerase III su 98.1 5.6E-05 1.2E-09 67.6 11.4 105 14-138 120-225 (944)
102 PRK05896 DNA polymerase III su 98.1 3E-05 6.5E-10 66.9 9.3 132 2-157 104-240 (605)
103 PRK05642 DNA replication initi 98.0 4.3E-05 9.3E-10 58.8 9.2 128 15-158 99-232 (234)
104 PRK00440 rfc replication facto 98.0 5.7E-05 1.2E-09 60.1 9.9 123 14-161 103-226 (319)
105 COG1474 CDC6 Cdc6-related prot 98.0 0.00022 4.7E-09 58.4 13.4 134 12-161 122-265 (366)
106 PRK07133 DNA polymerase III su 98.0 8.9E-05 1.9E-09 65.2 11.8 132 2-157 103-239 (725)
107 TIGR00678 holB DNA polymerase 98.0 5.8E-05 1.3E-09 55.9 9.2 98 3-124 82-183 (188)
108 PRK08903 DnaA regulatory inact 98.0 7.9E-05 1.7E-09 56.7 9.2 129 13-159 90-224 (227)
109 PRK06647 DNA polymerase III su 97.9 0.00015 3.2E-09 62.6 11.7 121 14-158 120-241 (563)
110 PRK14959 DNA polymerase III su 97.9 9.2E-05 2E-09 64.2 10.4 121 14-158 120-241 (624)
111 TIGR02030 BchI-ChlI magnesium 97.9 7.4E-05 1.6E-09 60.5 9.3 134 14-163 132-311 (337)
112 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00012 2.5E-09 62.1 10.7 108 14-138 82-190 (489)
113 PRK06305 DNA polymerase III su 97.9 0.00018 3.8E-09 60.6 11.2 122 13-158 121-243 (451)
114 COG0593 DnaA ATPase involved i 97.9 7.2E-05 1.6E-09 61.7 8.7 136 14-165 176-317 (408)
115 KOG1514 Origin recognition com 97.9 0.00011 2.4E-09 63.7 9.9 139 13-165 508-659 (767)
116 smart00350 MCM minichromosome 97.9 0.00025 5.4E-09 60.6 11.9 133 14-162 301-505 (509)
117 PLN03025 replication factor C 97.9 0.00016 3.5E-09 58.0 10.1 118 14-156 100-218 (319)
118 PRK06620 hypothetical protein; 97.9 0.00018 3.9E-09 54.6 9.7 123 14-158 86-213 (214)
119 PRK14957 DNA polymerase III su 97.9 0.00018 3.9E-09 61.7 10.6 133 3-159 105-242 (546)
120 COG2812 DnaX DNA polymerase II 97.8 9.8E-05 2.1E-09 62.6 8.6 108 14-141 120-228 (515)
121 PF00308 Bac_DnaA: Bacterial d 97.8 2E-05 4.4E-10 60.0 4.1 113 13-140 97-215 (219)
122 PRK13407 bchI magnesium chelat 97.8 0.00034 7.3E-09 56.6 11.0 129 15-161 130-306 (334)
123 PRK13341 recombination factor 97.8 0.00036 7.7E-09 61.9 12.0 126 13-160 109-246 (725)
124 PRK14950 DNA polymerase III su 97.8 0.00047 1E-08 59.8 11.9 121 14-158 121-242 (585)
125 PRK14952 DNA polymerase III su 97.7 0.00032 7E-09 60.7 9.9 121 15-158 120-241 (584)
126 TIGR02031 BchD-ChlD magnesium 97.7 0.0003 6.6E-09 61.0 9.5 133 15-163 86-260 (589)
127 CHL00081 chlI Mg-protoporyphyr 97.7 0.00029 6.3E-09 57.3 8.8 133 14-162 145-323 (350)
128 TIGR02903 spore_lon_C ATP-depe 97.6 0.00075 1.6E-08 58.9 11.2 98 60-162 324-431 (615)
129 COG2256 MGS1 ATPase related to 97.6 0.00058 1.2E-08 56.0 9.6 138 2-165 89-242 (436)
130 PRK14948 DNA polymerase III su 97.6 0.00091 2E-08 58.4 11.5 115 2-136 106-225 (620)
131 PRK06964 DNA polymerase III su 97.6 0.00013 2.8E-09 59.2 5.9 69 15-102 134-202 (342)
132 PRK05707 DNA polymerase III su 97.6 0.00021 4.4E-09 57.8 7.0 71 14-103 107-177 (328)
133 PRK14955 DNA polymerase III su 97.6 0.00026 5.7E-09 58.6 7.7 124 15-158 129-254 (397)
134 PRK09112 DNA polymerase III su 97.6 0.0003 6.5E-09 57.3 7.7 101 13-134 141-241 (351)
135 PRK14971 DNA polymerase III su 97.6 0.001 2.2E-08 58.1 11.3 120 15-158 123-243 (614)
136 PRK05342 clpX ATP-dependent pr 97.6 0.001 2.2E-08 55.4 10.7 143 11-155 171-399 (412)
137 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0007 1.5E-08 52.9 8.0 126 14-162 106-258 (262)
138 PHA02544 44 clamp loader, smal 97.5 0.00024 5.3E-09 56.7 5.6 75 13-105 100-174 (316)
139 PRK14954 DNA polymerase III su 97.5 0.00095 2.1E-08 58.2 9.5 125 14-158 128-254 (620)
140 PRK11034 clpA ATP-dependent Cl 97.5 0.0011 2.4E-08 59.1 10.0 121 8-144 552-718 (758)
141 COG2255 RuvB Holliday junction 97.4 0.0028 6.1E-08 49.9 10.9 131 15-162 105-252 (332)
142 PF05621 TniB: Bacterial TniB 97.4 0.0012 2.6E-08 52.4 8.9 147 4-164 136-291 (302)
143 PF05496 RuvB_N: Holliday junc 97.4 0.0013 2.8E-08 50.2 8.4 108 13-137 101-225 (233)
144 KOG2004 Mitochondrial ATP-depe 97.4 0.00034 7.4E-09 61.0 5.6 79 14-105 506-597 (906)
145 TIGR02442 Cob-chelat-sub cobal 97.3 0.0021 4.6E-08 56.4 10.2 133 15-163 128-306 (633)
146 TIGR00382 clpX endopeptidase C 97.3 0.0014 3.1E-08 54.4 8.6 131 12-144 180-387 (413)
147 TIGR01650 PD_CobS cobaltochela 97.3 0.0017 3.7E-08 52.2 8.5 113 13-138 134-281 (327)
148 TIGR02639 ClpA ATP-dependent C 97.3 0.0033 7.3E-08 56.0 11.2 122 6-143 546-713 (731)
149 PRK07471 DNA polymerase III su 97.2 0.0013 2.8E-08 53.9 7.4 74 12-104 140-213 (365)
150 TIGR00764 lon_rel lon-related 97.2 0.0006 1.3E-08 59.4 5.5 102 59-162 268-392 (608)
151 cd00009 AAA The AAA+ (ATPases 97.2 0.0011 2.4E-08 45.7 5.9 68 7-90 78-151 (151)
152 PRK07993 DNA polymerase III su 97.2 0.0011 2.4E-08 53.6 6.6 70 14-102 109-178 (334)
153 COG1224 TIP49 DNA helicase TIP 97.2 0.0055 1.2E-07 49.8 10.1 131 14-164 292-435 (450)
154 COG0714 MoxR-like ATPases [Gen 97.2 0.0011 2.4E-08 53.5 6.2 74 15-104 114-203 (329)
155 PRK08769 DNA polymerase III su 97.1 0.0027 5.9E-08 51.1 7.7 69 15-102 115-183 (319)
156 KOG0741 AAA+-type ATPase [Post 97.1 0.0025 5.4E-08 54.2 7.5 95 2-102 587-684 (744)
157 PRK06871 DNA polymerase III su 97.1 0.0018 3.9E-08 52.2 6.5 70 15-103 109-178 (325)
158 PF01637 Arch_ATPase: Archaeal 97.1 0.00069 1.5E-08 50.9 4.0 112 2-125 106-227 (234)
159 PF05673 DUF815: Protein of un 97.0 0.017 3.6E-07 44.7 11.3 96 2-110 94-213 (249)
160 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0077 1.7E-07 54.6 10.7 120 9-144 663-828 (852)
161 PRK06090 DNA polymerase III su 97.0 0.0022 4.8E-08 51.6 6.5 70 14-102 109-178 (319)
162 COG0542 clpA ATP-binding subun 97.0 0.0018 3.9E-08 57.5 6.3 93 2-106 251-348 (786)
163 TIGR03345 VI_ClpV1 type VI sec 96.9 0.01 2.2E-07 53.9 10.0 120 7-143 662-832 (852)
164 PRK11331 5-methylcytosine-spec 96.7 0.0061 1.3E-07 51.1 7.2 71 4-90 261-357 (459)
165 COG0466 Lon ATP-dependent Lon 96.7 0.0058 1.3E-07 53.6 7.1 141 6-160 411-583 (782)
166 KOG2028 ATPase related to the 96.7 0.017 3.8E-07 47.3 9.3 138 2-161 206-368 (554)
167 PRK07276 DNA polymerase III su 96.7 0.013 2.8E-07 46.6 8.4 93 15-134 106-198 (290)
168 KOG2680 DNA helicase TIP49, TB 96.6 0.033 7.1E-07 44.6 10.2 133 14-165 289-433 (454)
169 PRK05564 DNA polymerase III su 96.6 0.007 1.5E-07 48.4 6.7 89 14-124 94-182 (313)
170 PRK08058 DNA polymerase III su 96.6 0.0052 1.1E-07 49.6 5.7 69 14-101 111-179 (329)
171 PRK06581 DNA polymerase III su 96.6 0.0066 1.4E-07 46.9 5.9 76 14-108 90-165 (263)
172 PF13177 DNA_pol3_delta2: DNA 96.5 0.0039 8.4E-08 45.2 4.3 58 14-90 103-160 (162)
173 PRK07399 DNA polymerase III su 96.5 0.021 4.5E-07 45.9 8.7 99 14-135 125-223 (314)
174 COG3267 ExeA Type II secretory 96.5 0.057 1.2E-06 42.0 10.6 128 12-155 130-267 (269)
175 CHL00095 clpC Clp protease ATP 96.5 0.026 5.6E-07 51.1 10.0 123 5-143 603-783 (821)
176 PRK09862 putative ATP-dependen 96.5 0.053 1.2E-06 46.4 11.3 131 14-160 295-491 (506)
177 smart00382 AAA ATPases associa 96.5 0.0027 5.9E-08 43.2 3.0 80 2-91 67-147 (148)
178 PRK13406 bchD magnesium chelat 96.5 0.025 5.4E-07 49.2 9.3 132 14-162 94-251 (584)
179 PRK13531 regulatory ATPase Rav 96.4 0.051 1.1E-06 46.2 10.4 129 15-163 109-285 (498)
180 KOG1942 DNA helicase, TBP-inte 96.3 0.08 1.7E-06 42.3 10.7 132 12-163 295-440 (456)
181 TIGR00368 Mg chelatase-related 96.3 0.081 1.8E-06 45.3 11.4 130 14-159 296-497 (499)
182 KOG0989 Replication factor C, 96.3 0.013 2.8E-07 46.8 5.8 91 15-124 131-222 (346)
183 PRK05201 hslU ATP-dependent pr 96.2 0.0076 1.7E-07 50.2 4.5 84 13-100 249-344 (443)
184 PRK10865 protein disaggregatio 96.0 0.079 1.7E-06 48.3 10.5 116 12-143 668-830 (857)
185 PF05729 NACHT: NACHT domain 95.9 0.036 7.8E-07 39.3 6.7 87 9-106 77-165 (166)
186 TIGR00390 hslU ATP-dependent p 95.8 0.014 3E-07 48.7 4.6 84 13-100 247-342 (441)
187 PRK08699 DNA polymerase III su 95.8 0.019 4.1E-07 46.4 5.1 82 2-102 98-183 (325)
188 COG1239 ChlI Mg-chelatase subu 95.8 0.078 1.7E-06 44.0 8.5 76 14-105 145-233 (423)
189 COG1067 LonB Predicted ATP-dep 95.7 0.012 2.6E-07 51.6 3.9 92 71-164 293-402 (647)
190 PF07693 KAP_NTPase: KAP famil 95.7 0.052 1.1E-06 43.3 7.4 80 12-106 171-265 (325)
191 PRK08485 DNA polymerase III su 95.7 0.044 9.5E-07 41.1 6.2 83 2-102 42-137 (206)
192 PHA02244 ATPase-like protein 95.6 0.098 2.1E-06 43.0 8.6 67 13-93 180-263 (383)
193 COG1220 HslU ATP-dependent pro 95.5 0.038 8.2E-07 44.9 5.8 83 14-100 251-345 (444)
194 COG2607 Predicted ATPase (AAA+ 95.4 0.28 6.1E-06 38.1 9.8 94 4-110 129-245 (287)
195 PTZ00111 DNA replication licen 95.4 0.47 1E-05 43.3 12.7 38 125-162 768-805 (915)
196 PF07728 AAA_5: AAA domain (dy 95.3 0.016 3.5E-07 40.4 2.7 54 13-82 65-139 (139)
197 PF14516 AAA_35: AAA-like doma 95.0 0.25 5.5E-06 40.0 9.1 98 12-125 126-232 (331)
198 PRK07132 DNA polymerase III su 94.9 0.1 2.2E-06 41.7 6.6 70 14-102 91-160 (299)
199 COG0470 HolB ATPase involved i 94.9 0.077 1.7E-06 42.1 5.9 69 14-101 110-178 (325)
200 KOG2035 Replication factor C, 94.7 0.082 1.8E-06 41.8 5.3 91 15-124 129-220 (351)
201 PF00493 MCM: MCM2/3/5 family 94.7 0.14 3E-06 41.5 6.9 133 14-162 122-327 (331)
202 PRK13765 ATP-dependent proteas 94.7 0.1 2.2E-06 46.0 6.4 100 59-160 277-399 (637)
203 PRK05818 DNA polymerase III su 94.5 0.11 2.4E-06 40.6 5.7 59 14-91 89-147 (261)
204 PF05707 Zot: Zonular occluden 94.4 0.059 1.3E-06 40.1 3.8 68 13-91 79-146 (193)
205 PRK05917 DNA polymerase III su 94.3 0.073 1.6E-06 42.3 4.4 58 15-91 97-154 (290)
206 COG0542 clpA ATP-binding subun 94.1 0.13 2.8E-06 46.1 5.8 120 8-143 588-756 (786)
207 KOG2227 Pre-initiation complex 94.0 0.53 1.1E-05 39.8 8.9 138 14-165 257-419 (529)
208 TIGR01128 holA DNA polymerase 94.0 1.4 3.1E-05 34.6 11.3 128 14-161 47-178 (302)
209 KOG1969 DNA replication checkp 93.8 0.5 1.1E-05 42.1 8.7 107 60-171 439-547 (877)
210 PRK05574 holA DNA polymerase I 93.8 2.7 5.9E-05 33.6 12.7 131 14-162 77-214 (340)
211 TIGR00602 rad24 checkpoint pro 93.6 0.76 1.6E-05 40.6 9.7 111 13-142 195-329 (637)
212 PF12846 AAA_10: AAA-like doma 93.1 0.13 2.8E-06 40.1 3.9 71 12-97 219-294 (304)
213 PRK07452 DNA polymerase III su 92.9 1.6 3.5E-05 34.9 10.0 128 14-160 62-198 (326)
214 KOG2228 Origin recognition com 92.6 0.21 4.5E-06 40.7 4.3 76 14-104 138-219 (408)
215 PRK15115 response regulator Gl 92.6 0.25 5.4E-06 41.3 5.1 125 14-158 229-381 (444)
216 PF07724 AAA_2: AAA domain (Cd 92.2 0.26 5.7E-06 36.0 4.3 56 15-73 70-134 (171)
217 PF00931 NB-ARC: NB-ARC domain 92.0 0.4 8.6E-06 37.4 5.3 99 12-133 100-202 (287)
218 PF05872 DUF853: Bacterial pro 92.0 0.62 1.3E-05 39.4 6.5 72 2-86 239-315 (502)
219 PF06068 TIP49: TIP49 C-termin 91.9 0.21 4.6E-06 41.1 3.8 77 14-110 279-367 (398)
220 TIGR02974 phageshock_pspF psp 91.8 0.72 1.6E-05 37.3 6.8 112 14-141 94-233 (329)
221 PRK14700 recombination factor 91.2 1.8 3.9E-05 34.6 8.1 100 57-163 6-117 (300)
222 PRK10365 transcriptional regul 90.8 1.8 3.9E-05 36.0 8.4 126 13-158 233-386 (441)
223 TIGR01818 ntrC nitrogen regula 90.0 1.2 2.7E-05 37.3 6.8 123 14-158 229-381 (463)
224 PF13304 AAA_21: AAA domain; P 88.7 1.2 2.5E-05 33.1 5.3 45 15-73 259-303 (303)
225 PF13401 AAA_22: AAA domain; P 88.1 1.2 2.6E-05 30.2 4.6 24 3-26 77-100 (131)
226 PF02969 TAF: TATA box binding 88.0 1.3 2.8E-05 27.2 4.1 32 128-159 35-66 (66)
227 PF09336 Vps4_C: Vps4 C termin 87.9 0.12 2.6E-06 31.3 -0.5 25 148-172 29-54 (62)
228 PRK05022 anaerobic nitric oxid 87.6 3.8 8.2E-05 35.2 8.2 113 14-143 282-422 (509)
229 PF10236 DAP3: Mitochondrial r 87.6 13 0.00027 29.9 10.8 129 3-132 143-308 (309)
230 PRK11388 DNA-binding transcrip 87.5 3.5 7.5E-05 36.4 8.1 126 14-159 417-569 (638)
231 cd01120 RecA-like_NTPases RecA 87.4 1.9 4E-05 30.0 5.4 64 5-72 77-140 (165)
232 PRK11608 pspF phage shock prot 87.3 2.1 4.6E-05 34.5 6.2 111 14-140 101-239 (326)
233 KOG0990 Replication factor C, 86.7 8.8 0.00019 31.2 9.1 74 13-105 131-204 (360)
234 TIGR01817 nifA Nif-specific re 86.4 4 8.8E-05 35.2 7.8 122 14-155 291-439 (534)
235 TIGR02237 recomb_radB DNA repa 85.9 1.1 2.4E-05 33.3 3.7 68 3-73 87-154 (209)
236 KOG1968 Replication factor C, 85.6 3.2 7E-05 38.1 7.0 105 15-140 430-535 (871)
237 PF07726 AAA_3: ATPase family 85.5 0.78 1.7E-05 32.1 2.4 52 15-82 64-129 (131)
238 PRK11361 acetoacetate metaboli 85.5 2 4.3E-05 35.9 5.4 125 14-158 238-390 (457)
239 smart00803 TAF TATA box bindin 85.0 1.9 4.2E-05 26.3 3.7 34 126-159 32-65 (65)
240 TIGR02329 propionate_PrpR prop 84.6 2.5 5.4E-05 36.5 5.6 126 14-156 308-465 (526)
241 PRK10923 glnG nitrogen regulat 84.4 5.3 0.00011 33.6 7.5 126 14-158 233-385 (469)
242 PLN03210 Resistant to P. syrin 83.8 7.5 0.00016 36.9 8.8 94 12-128 295-391 (1153)
243 PRK13539 cytochrome c biogenes 83.5 5 0.00011 29.8 6.3 65 6-92 138-202 (207)
244 PHA00012 I assembly protein 83.5 1.3 2.8E-05 36.0 3.1 56 14-78 82-137 (361)
245 COG1219 ClpX ATP-dependent pro 83.4 1.3 2.9E-05 35.9 3.2 42 13-54 162-203 (408)
246 COG1221 PspF Transcriptional r 82.2 5.4 0.00012 33.3 6.4 114 14-144 174-312 (403)
247 smart00763 AAA_PrkA PrkA AAA d 81.8 4.9 0.00011 33.1 6.0 63 42-107 251-330 (361)
248 PF14532 Sigma54_activ_2: Sigm 81.6 1.7 3.7E-05 30.2 3.0 14 13-26 69-82 (138)
249 PRK15424 propionate catabolism 81.4 7.5 0.00016 33.8 7.3 124 14-154 323-478 (538)
250 PF00808 CBFD_NFYB_HMF: Histon 81.0 3.6 7.8E-05 24.7 3.9 31 128-158 35-65 (65)
251 PRK04841 transcriptional regul 80.9 12 0.00026 34.1 8.8 98 12-128 120-221 (903)
252 TIGR02915 PEP_resp_reg putativ 80.0 9.9 0.00021 31.7 7.5 122 14-154 234-382 (445)
253 COG1136 SalX ABC-type antimicr 79.8 4.6 0.0001 31.0 4.9 64 5-88 152-215 (226)
254 PRK10820 DNA-binding transcrip 79.5 16 0.00036 31.5 8.8 122 14-154 299-447 (520)
255 PF13173 AAA_14: AAA domain 78.2 2.8 6.1E-05 28.6 3.1 64 13-95 61-126 (128)
256 KOG2383 Predicted ATPase [Gene 78.2 8.2 0.00018 32.4 6.1 100 14-139 194-298 (467)
257 COG1241 MCM2 Predicted ATPase 77.3 11 0.00024 33.7 7.1 43 120-162 551-593 (682)
258 COG1485 Predicted ATPase [Gene 77.2 3.2 6.8E-05 34.0 3.5 39 15-68 132-170 (367)
259 PF12775 AAA_7: P-loop contain 77.1 4.9 0.00011 31.6 4.5 86 13-106 100-195 (272)
260 cd01121 Sms Sms (bacterial rad 76.0 15 0.00032 30.4 7.2 27 2-28 147-173 (372)
261 COG1131 CcmA ABC-type multidru 76.0 6.8 0.00015 31.1 5.1 56 6-74 147-202 (293)
262 PRK15429 formate hydrogenlyase 75.9 9 0.00019 34.2 6.4 111 14-141 471-609 (686)
263 cd00076 H4 Histone H4, one of 75.1 7.6 0.00017 25.0 4.2 38 125-162 42-79 (85)
264 PLN00035 histone H4; Provision 74.6 7.5 0.00016 26.0 4.2 38 126-163 59-96 (103)
265 PTZ00015 histone H4; Provision 74.5 7.6 0.00016 26.0 4.2 39 125-163 59-97 (102)
266 cd03216 ABC_Carb_Monos_I This 74.4 7.2 0.00016 27.9 4.5 55 5-73 92-146 (163)
267 PRK13541 cytochrome c biogenes 73.6 19 0.00042 26.3 6.8 56 6-75 134-189 (195)
268 TIGR01166 cbiO cobalt transpor 73.3 18 0.00038 26.4 6.5 53 5-71 137-189 (190)
269 cd03255 ABC_MJ0796_Lo1CDE_FtsE 73.2 8.5 0.00018 28.7 4.9 54 6-72 151-204 (218)
270 PF03969 AFG1_ATPase: AFG1-lik 73.1 5.4 0.00012 32.8 4.0 40 14-68 128-167 (362)
271 COG1121 ZnuC ABC-type Mn/Zn tr 72.6 13 0.00027 29.2 5.7 56 4-73 148-203 (254)
272 TIGR03864 PQQ_ABC_ATP ABC tran 71.4 13 0.00028 28.2 5.6 56 5-73 142-197 (236)
273 cd03267 ABC_NatA_like Similar 71.2 12 0.00025 28.5 5.3 56 5-73 163-218 (236)
274 cd01124 KaiC KaiC is a circadi 71.2 13 0.00029 26.6 5.4 57 3-70 85-141 (187)
275 KOG0482 DNA replication licens 71.2 7.4 0.00016 33.7 4.4 92 71-164 507-641 (721)
276 cd03227 ABC_Class2 ABC-type Cl 71.1 9.4 0.0002 27.2 4.5 47 13-73 99-145 (162)
277 cd03301 ABC_MalK_N The N-termi 70.8 8.7 0.00019 28.5 4.4 54 6-72 141-194 (213)
278 PRK11629 lolD lipoprotein tran 70.7 10 0.00023 28.6 4.9 55 6-73 156-210 (233)
279 PRK06585 holA DNA polymerase I 70.7 54 0.0012 26.4 11.2 74 84-161 135-210 (343)
280 PRK13540 cytochrome c biogenes 70.6 21 0.00045 26.3 6.4 55 6-74 138-192 (200)
281 PF00488 MutS_V: MutS domain V 70.4 13 0.00028 28.6 5.3 55 3-71 114-168 (235)
282 cd03298 ABC_ThiQ_thiamine_tran 70.3 8.4 0.00018 28.6 4.2 55 6-73 139-193 (211)
283 cd03231 ABC_CcmA_heme_exporter 70.2 20 0.00044 26.4 6.3 56 6-75 136-191 (201)
284 PRK13543 cytochrome c biogenes 70.2 16 0.00035 27.3 5.7 55 6-74 148-202 (214)
285 PRK11300 livG leucine/isoleuci 70.1 10 0.00023 29.0 4.8 55 6-73 164-218 (255)
286 cd03256 ABC_PhnC_transporter A 70.0 10 0.00022 28.7 4.7 55 6-73 155-209 (241)
287 cd01393 recA_like RecA is a b 69.9 4.9 0.00011 30.1 2.9 61 11-72 112-172 (226)
288 PRK13538 cytochrome c biogenes 69.5 19 0.00041 26.6 6.0 55 6-74 140-194 (204)
289 cd01122 GP4d_helicase GP4d_hel 69.2 6.7 0.00015 30.3 3.6 57 5-66 132-188 (271)
290 cd07981 TAF12 TATA Binding Pro 69.1 14 0.00029 22.9 4.3 35 128-162 34-68 (72)
291 TIGR02211 LolD_lipo_ex lipopro 69.0 13 0.00027 27.8 5.0 54 6-72 152-205 (221)
292 cd03293 ABC_NrtD_SsuB_transpor 68.9 11 0.00025 28.1 4.7 54 6-72 142-195 (220)
293 cd03287 ABC_MSH3_euk MutS3 hom 68.8 13 0.00028 28.3 5.0 49 13-73 110-158 (222)
294 TIGR00929 VirB4_CagE type IV s 68.6 14 0.0003 33.3 5.9 65 12-91 628-697 (785)
295 KOG1051 Chaperone HSP104 and r 68.3 11 0.00024 34.7 5.1 51 4-68 651-710 (898)
296 cd03240 ABC_Rad50 The catalyti 67.9 16 0.00036 27.2 5.3 60 9-88 135-195 (204)
297 cd03214 ABC_Iron-Siderophores_ 67.7 14 0.00031 26.7 4.9 55 6-73 108-162 (180)
298 cd03259 ABC_Carb_Solutes_like 67.7 10 0.00022 28.2 4.2 55 6-73 141-195 (213)
299 COG2909 MalT ATP-dependent tra 67.6 42 0.00092 30.9 8.4 107 2-127 117-228 (894)
300 COG1116 TauB ABC-type nitrate/ 67.5 18 0.00039 28.2 5.5 74 5-91 140-220 (248)
301 PRK10575 iron-hydroxamate tran 67.4 13 0.00028 28.8 4.9 55 5-72 157-211 (265)
302 PRK10869 recombination and rep 67.4 27 0.00058 30.5 7.2 72 13-106 452-536 (553)
303 cd03296 ABC_CysA_sulfate_impor 67.3 12 0.00025 28.5 4.5 54 6-72 147-200 (239)
304 PRK13652 cbiO cobalt transport 67.2 13 0.00029 29.0 4.9 56 5-73 147-202 (277)
305 cd03297 ABC_ModC_molybdenum_tr 66.8 12 0.00026 27.9 4.4 55 6-73 142-196 (214)
306 TIGR01184 ntrCD nitrate transp 66.7 13 0.00028 28.1 4.7 54 6-72 125-178 (230)
307 cd03265 ABC_DrrA DrrA is the A 66.6 14 0.00031 27.5 4.9 56 5-73 141-196 (220)
308 PRK09361 radB DNA repair and r 66.5 6.2 0.00013 29.7 2.8 85 12-97 106-197 (225)
309 cd03257 ABC_NikE_OppD_transpor 66.1 13 0.00029 27.8 4.6 55 6-73 156-210 (228)
310 KOG0745 Putative ATP-dependent 66.1 7.1 0.00015 33.2 3.2 88 2-92 276-387 (564)
311 cd03229 ABC_Class3 This class 65.9 13 0.00028 26.9 4.3 56 5-73 110-165 (178)
312 cd03258 ABC_MetN_methionine_tr 65.9 12 0.00027 28.2 4.4 54 6-72 151-204 (233)
313 cd01394 radB RadB. The archaea 65.9 8.4 0.00018 28.8 3.4 79 13-92 103-188 (218)
314 PF04465 DUF499: Protein of un 65.9 8.9 0.00019 35.9 4.1 17 12-28 98-114 (1035)
315 TIGR02315 ABC_phnC phosphonate 65.8 15 0.00033 27.8 4.9 54 6-72 156-209 (243)
316 TIGR02770 nickel_nikD nickel i 65.8 13 0.00028 28.1 4.5 55 6-73 136-190 (230)
317 COG4555 NatA ABC-type Na+ tran 65.8 18 0.0004 27.6 5.1 53 7-73 145-197 (245)
318 TIGR03410 urea_trans_UrtE urea 65.7 15 0.00033 27.6 4.9 55 6-73 142-196 (230)
319 COG2036 HHT1 Histones H3 and H 65.7 15 0.00033 24.0 4.1 36 128-163 51-86 (91)
320 PF09820 AAA-ATPase_like: Pred 65.6 11 0.00024 29.8 4.2 18 12-29 142-159 (284)
321 PRK13645 cbiO cobalt transport 65.6 12 0.00026 29.4 4.4 54 6-72 161-214 (289)
322 cd03226 ABC_cobalt_CbiO_domain 65.5 15 0.00034 27.0 4.8 54 6-73 137-190 (205)
323 PRK09984 phosphonate/organopho 65.3 14 0.0003 28.5 4.7 56 5-73 162-217 (262)
324 cd03286 ABC_MSH6_euk MutS6 hom 65.3 15 0.00033 27.9 4.7 59 4-76 102-160 (218)
325 COG1127 Ttg2A ABC-type transpo 65.3 16 0.00035 28.5 4.8 57 3-72 153-209 (263)
326 cd03261 ABC_Org_Solvent_Resist 64.9 14 0.0003 28.0 4.5 54 6-72 147-200 (235)
327 COG1122 CbiO ABC-type cobalt t 64.6 17 0.00036 28.0 4.9 55 6-73 149-203 (235)
328 PF07034 ORC3_N: Origin recogn 64.5 12 0.00026 30.3 4.3 76 13-105 199-280 (330)
329 PRK11248 tauB taurine transpor 64.4 15 0.00031 28.4 4.6 56 5-73 138-193 (255)
330 PRK09544 znuC high-affinity zi 64.3 16 0.00034 28.2 4.8 56 5-73 130-185 (251)
331 TIGR02746 TraC-F-type type-IV 64.2 21 0.00045 32.4 6.1 67 12-91 636-707 (797)
332 cd03295 ABC_OpuCA_Osmoprotecti 64.2 13 0.00028 28.3 4.3 55 5-72 145-199 (242)
333 COG1119 ModF ABC-type molybden 64.0 39 0.00085 26.4 6.7 61 5-78 181-242 (257)
334 PRK10771 thiQ thiamine transpo 63.8 16 0.00035 27.5 4.7 55 6-73 140-194 (232)
335 PRK11831 putative ABC transpor 63.7 15 0.00033 28.5 4.6 55 6-73 154-208 (269)
336 PRK10418 nikD nickel transport 63.7 14 0.00031 28.3 4.5 54 6-72 151-204 (254)
337 PRK10938 putative molybdenum t 63.6 24 0.00053 29.9 6.2 57 5-74 411-467 (490)
338 cd03225 ABC_cobalt_CbiO_domain 63.6 17 0.00037 26.9 4.7 54 6-73 145-198 (211)
339 cd03228 ABCC_MRP_Like The MRP 63.4 25 0.00055 25.1 5.5 53 6-73 107-159 (171)
340 PRK13635 cbiO cobalt transport 63.2 18 0.00038 28.4 4.9 56 5-73 150-205 (279)
341 COG2204 AtoC Response regulato 63.1 33 0.00072 29.3 6.7 115 14-141 236-374 (464)
342 PRK10247 putative ABC transpor 63.1 21 0.00047 26.8 5.3 55 5-72 147-201 (225)
343 PRK13537 nodulation ABC transp 63.1 19 0.00041 28.7 5.2 54 6-73 149-202 (306)
344 TIGR01277 thiQ thiamine ABC tr 63.1 17 0.00036 27.1 4.6 54 6-72 139-192 (213)
345 cd03262 ABC_HisP_GlnQ_permease 62.9 19 0.00042 26.6 4.9 54 6-73 146-199 (213)
346 PRK10619 histidine/lysine/argi 62.8 16 0.00035 28.1 4.6 55 5-73 162-216 (257)
347 PRK15112 antimicrobial peptide 62.7 16 0.00035 28.4 4.6 55 6-73 160-214 (267)
348 cd03292 ABC_FtsE_transporter F 62.7 18 0.00039 26.8 4.7 54 6-73 147-200 (214)
349 cd03294 ABC_Pro_Gly_Bertaine T 62.6 17 0.00036 28.3 4.7 54 6-72 171-224 (269)
350 cd03235 ABC_Metallic_Cations A 62.6 21 0.00046 26.5 5.1 54 6-73 143-196 (213)
351 PRK13632 cbiO cobalt transport 62.5 24 0.00053 27.4 5.6 54 6-72 153-206 (271)
352 cd03230 ABC_DR_subfamily_A Thi 62.5 21 0.00046 25.6 4.9 54 6-73 106-159 (173)
353 PF13335 Mg_chelatase_2: Magne 62.5 26 0.00056 23.0 4.9 40 120-159 55-94 (96)
354 PRK11701 phnK phosphonate C-P 62.3 19 0.00041 27.7 4.9 56 5-73 161-216 (258)
355 PRK10253 iron-enterobactin tra 62.3 18 0.0004 28.0 4.8 56 5-73 153-208 (265)
356 COG1066 Sms Predicted ATP-depe 62.1 51 0.0011 27.9 7.4 66 2-69 157-222 (456)
357 cd03268 ABC_BcrA_bacitracin_re 61.9 20 0.00043 26.5 4.8 54 6-73 137-190 (208)
358 cd03247 ABCC_cytochrome_bd The 61.9 26 0.00056 25.2 5.3 53 6-73 109-161 (178)
359 TIGR00960 3a0501s02 Type II (G 61.9 22 0.00047 26.4 5.1 54 6-73 149-202 (216)
360 cd03233 ABC_PDR_domain1 The pl 61.8 25 0.00054 26.0 5.3 54 6-71 129-182 (202)
361 TIGR03740 galliderm_ABC gallid 61.7 18 0.00038 27.1 4.5 54 6-73 135-188 (223)
362 cd03219 ABC_Mj1267_LivG_branch 61.6 21 0.00045 26.9 5.0 54 6-73 154-207 (236)
363 PRK10419 nikE nickel transport 61.4 16 0.00035 28.4 4.4 56 5-73 161-216 (268)
364 PRK13648 cbiO cobalt transport 61.3 29 0.00062 26.9 5.8 55 6-73 153-207 (269)
365 COG4565 CitB Response regulato 61.2 59 0.0013 24.9 7.0 65 5-86 38-102 (224)
366 TIGR03005 ectoine_ehuA ectoine 61.1 20 0.00043 27.5 4.8 54 6-72 157-210 (252)
367 PRK11153 metN DL-methionine tr 61.0 18 0.00038 29.4 4.7 55 6-73 151-205 (343)
368 PF00125 Histone: Core histone 60.9 17 0.00037 22.2 3.7 32 128-159 42-73 (75)
369 PRK11231 fecE iron-dicitrate t 60.9 18 0.00039 27.8 4.6 54 6-73 149-202 (255)
370 PRK13643 cbiO cobalt transport 60.7 20 0.00043 28.2 4.8 54 6-73 155-208 (288)
371 cd03218 ABC_YhbG The ABC trans 60.7 22 0.00047 26.8 4.9 55 5-73 143-197 (232)
372 PRK11823 DNA repair protein Ra 60.7 40 0.00087 28.6 6.9 27 2-28 145-171 (446)
373 PRK13646 cbiO cobalt transport 60.7 18 0.00039 28.5 4.6 55 6-73 156-210 (286)
374 TIGR02769 nickel_nikE nickel i 60.5 18 0.0004 27.9 4.6 55 6-73 161-215 (265)
375 TIGR02323 CP_lyasePhnK phospho 60.4 19 0.00041 27.5 4.6 56 5-73 158-213 (253)
376 TIGR01189 ccmA heme ABC export 60.3 48 0.001 24.2 6.6 53 7-73 139-191 (198)
377 cd03213 ABCG_EPDR ABCG transpo 60.3 46 0.00099 24.4 6.5 52 5-70 121-172 (194)
378 PRK14250 phosphate ABC transpo 60.2 16 0.00036 27.7 4.2 55 6-73 142-196 (241)
379 cd03232 ABC_PDR_domain2 The pl 60.2 42 0.00091 24.5 6.3 51 6-70 119-169 (192)
380 COG3899 Predicted ATPase [Gene 60.1 56 0.0012 30.2 8.1 116 8-138 149-265 (849)
381 PRK10584 putative ABC transpor 59.5 28 0.00061 26.1 5.3 54 6-72 157-210 (228)
382 COG0497 RecN ATPase involved i 59.5 27 0.00058 30.6 5.6 80 13-108 454-539 (557)
383 cd03215 ABC_Carb_Monos_II This 59.3 19 0.00042 26.1 4.3 54 6-73 115-168 (182)
384 TIGR01188 drrA daunorubicin re 59.2 24 0.00052 27.9 5.1 55 5-73 134-188 (302)
385 cd03283 ABC_MutS-like MutS-lik 59.1 25 0.00054 26.2 4.9 57 3-73 95-152 (199)
386 PRK13633 cobalt transporter AT 59.1 26 0.00056 27.4 5.2 55 6-73 155-209 (280)
387 PRK09183 transposase/IS protei 59.0 19 0.00041 28.1 4.4 14 12-25 163-176 (259)
388 PRK13637 cbiO cobalt transport 58.9 21 0.00045 28.1 4.7 54 6-72 155-208 (287)
389 TIGR03411 urea_trans_UrtD urea 58.8 22 0.00047 27.0 4.7 54 5-73 153-206 (242)
390 PRK08116 hypothetical protein; 58.8 7.2 0.00016 30.6 2.0 66 13-93 178-251 (268)
391 TIGR02012 tigrfam_recA protein 58.8 23 0.00049 28.7 4.9 65 7-71 127-194 (321)
392 PRK13649 cbiO cobalt transport 58.5 23 0.0005 27.6 4.9 54 5-72 155-208 (280)
393 cd03269 ABC_putative_ATPase Th 58.2 24 0.00053 26.1 4.7 53 6-72 139-191 (210)
394 PRK11247 ssuB aliphatic sulfon 58.1 22 0.00048 27.6 4.6 54 6-72 144-197 (257)
395 cd03224 ABC_TM1139_LivF_branch 58.1 24 0.00052 26.3 4.7 52 7-72 144-195 (222)
396 TIGR03608 L_ocin_972_ABC putat 57.9 42 0.0009 24.6 6.0 51 6-70 145-195 (206)
397 PRK09580 sufC cysteine desulfu 57.9 27 0.00058 26.5 5.0 54 6-73 156-209 (248)
398 TIGR02673 FtsE cell division A 57.8 26 0.00057 25.9 4.9 54 6-73 148-201 (214)
399 PRK11614 livF leucine/isoleuci 57.6 25 0.00055 26.5 4.8 54 6-73 148-201 (237)
400 PF02463 SMC_N: RecF/RecN/SMC 57.5 18 0.0004 26.9 4.0 13 14-26 159-171 (220)
401 PRK13636 cbiO cobalt transport 57.5 21 0.00045 28.0 4.5 56 5-73 151-206 (283)
402 PRK13634 cbiO cobalt transport 57.3 22 0.00049 28.0 4.6 55 6-73 156-210 (290)
403 TIGR00968 3a0106s01 sulfate AB 57.2 21 0.00045 27.1 4.3 53 8-73 143-195 (237)
404 cd03244 ABCC_MRP_domain2 Domai 57.2 34 0.00074 25.4 5.4 53 6-73 150-202 (221)
405 PRK10908 cell division protein 57.1 28 0.00062 26.0 5.0 54 6-73 148-201 (222)
406 PRK13853 type IV secretion sys 56.9 16 0.00034 33.3 4.0 67 12-93 626-697 (789)
407 PRK11264 putative amino-acid A 56.8 28 0.00061 26.5 5.0 54 6-73 155-208 (250)
408 PRK10263 DNA translocase FtsK; 56.7 12 0.00026 35.9 3.3 74 15-101 1142-1217(1355)
409 cd03260 ABC_PstB_phosphate_tra 56.5 33 0.00072 25.7 5.3 52 6-72 152-203 (227)
410 PRK14258 phosphate ABC transpo 56.4 22 0.00047 27.5 4.3 55 6-73 161-215 (261)
411 PRK13650 cbiO cobalt transport 56.4 25 0.00055 27.5 4.8 55 5-72 150-204 (279)
412 TIGR00634 recN DNA repair prot 56.3 42 0.00091 29.3 6.4 71 14-106 463-546 (563)
413 PF13175 AAA_15: AAA ATPase do 56.3 42 0.0009 27.3 6.2 42 16-70 372-413 (415)
414 cd03223 ABCD_peroxisomal_ALDP 56.3 62 0.0014 23.0 6.5 49 5-70 101-149 (166)
415 cd01123 Rad51_DMC1_radA Rad51_ 56.2 12 0.00026 28.2 2.8 63 9-72 110-173 (235)
416 PRK15056 manganese/iron transp 56.2 30 0.00065 26.9 5.1 53 6-72 153-205 (272)
417 cd03276 ABC_SMC6_euk Eukaryoti 55.9 71 0.0015 23.6 6.9 51 12-74 130-181 (198)
418 PRK14240 phosphate transporter 55.9 29 0.00062 26.5 4.9 54 5-73 156-209 (250)
419 cd03266 ABC_NatA_sodium_export 55.8 30 0.00065 25.7 4.9 54 6-73 147-200 (218)
420 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 55.8 30 0.00065 26.0 5.0 54 6-73 153-206 (224)
421 PRK13638 cbiO cobalt transport 55.8 28 0.00061 27.0 4.9 54 6-73 147-200 (271)
422 cd00984 DnaB_C DnaB helicase C 55.8 15 0.00032 27.8 3.3 53 9-67 119-171 (242)
423 CHL00131 ycf16 sulfate ABC tra 55.7 37 0.00079 25.9 5.5 53 6-72 162-214 (252)
424 cd03249 ABC_MTABC3_MDL1_MDL2 M 55.7 38 0.00082 25.5 5.5 53 6-73 150-202 (238)
425 PRK13640 cbiO cobalt transport 55.6 29 0.00063 27.2 5.0 54 6-72 154-207 (282)
426 PRK13639 cbiO cobalt transport 55.6 30 0.00066 26.9 5.1 55 5-73 147-201 (275)
427 TIGR03522 GldA_ABC_ATP gliding 55.6 34 0.00073 27.1 5.4 54 5-73 143-196 (301)
428 KOG1051 Chaperone HSP104 and r 55.5 18 0.00038 33.5 4.1 92 2-106 268-365 (898)
429 PRK09493 glnQ glutamine ABC tr 55.5 27 0.00057 26.5 4.7 54 6-73 147-200 (240)
430 PRK13644 cbiO cobalt transport 55.5 31 0.00068 26.9 5.1 54 5-72 146-199 (274)
431 cd03252 ABCC_Hemolysin The ABC 55.5 35 0.00076 25.7 5.3 52 6-72 149-200 (237)
432 TIGR02142 modC_ABC molybdenum 55.4 25 0.00054 28.7 4.7 55 5-72 141-195 (354)
433 cd03300 ABC_PotA_N PotA is an 55.4 20 0.00044 27.0 4.0 54 6-72 141-194 (232)
434 cd03253 ABCC_ATM1_transporter 55.3 38 0.00082 25.5 5.5 53 6-73 148-200 (236)
435 cd03281 ABC_MSH5_euk MutS5 hom 55.2 35 0.00077 25.6 5.2 56 11-76 106-161 (213)
436 cd00983 recA RecA is a bacter 55.2 30 0.00066 28.1 5.0 65 8-72 128-195 (325)
437 cd03246 ABCC_Protease_Secretio 55.1 35 0.00075 24.5 5.0 54 5-72 106-159 (173)
438 PF13481 AAA_25: AAA domain; P 55.0 28 0.00061 25.1 4.6 27 2-28 129-156 (193)
439 PRK13641 cbiO cobalt transport 55.0 30 0.00065 27.2 5.0 55 5-73 155-209 (287)
440 cd07979 TAF9 TATA Binding Prot 54.9 48 0.001 22.6 5.3 39 125-163 30-68 (117)
441 PF04665 Pox_A32: Poxvirus A32 54.7 69 0.0015 24.9 6.8 73 13-104 98-170 (241)
442 cd03263 ABC_subfamily_A The AB 54.7 37 0.0008 25.2 5.3 53 6-73 144-196 (220)
443 smart00576 BTP Bromodomain tra 54.3 37 0.0008 21.1 4.4 35 128-162 38-72 (77)
444 TIGR02858 spore_III_AA stage I 54.2 25 0.00055 27.6 4.4 64 4-89 185-256 (270)
445 TIGR02982 heterocyst_DevA ABC 54.2 38 0.00083 25.2 5.3 52 6-70 152-203 (220)
446 cd03299 ABC_ModC_like Archeal 54.1 25 0.00053 26.7 4.3 56 5-73 139-194 (235)
447 cd03221 ABCF_EF-3 ABCF_EF-3 E 54.0 45 0.00097 23.2 5.3 49 7-72 82-130 (144)
448 PRK15093 antimicrobial peptide 54.0 28 0.0006 28.1 4.7 55 5-72 168-222 (330)
449 cd03237 ABC_RNaseL_inhibitor_d 53.9 27 0.0006 26.8 4.5 55 6-73 126-180 (246)
450 PRK14269 phosphate ABC transpo 53.9 36 0.00078 25.9 5.2 54 5-73 152-205 (246)
451 TIGR03873 F420-0_ABC_ATP propo 53.8 35 0.00077 26.1 5.1 54 6-73 148-201 (256)
452 cd03264 ABC_drug_resistance_li 53.7 36 0.00079 25.1 5.1 54 5-73 140-193 (211)
453 cd03222 ABC_RNaseL_inhibitor T 53.7 36 0.00077 24.9 4.9 54 7-73 83-136 (177)
454 cd03238 ABC_UvrA The excision 53.7 47 0.001 24.2 5.5 62 6-88 98-161 (176)
455 PRK14243 phosphate transporter 53.5 31 0.00067 26.7 4.8 54 5-73 161-214 (264)
456 cd03251 ABCC_MsbA MsbA is an e 53.4 44 0.00095 25.1 5.5 52 7-73 150-201 (234)
457 PRK10895 lipopolysaccharide AB 53.2 33 0.00072 26.0 4.9 55 5-73 147-201 (241)
458 PRK14253 phosphate ABC transpo 53.2 37 0.00079 25.9 5.1 53 6-73 156-208 (249)
459 PRK14261 phosphate ABC transpo 53.1 34 0.00073 26.2 4.9 53 6-73 160-212 (253)
460 TIGR01978 sufC FeS assembly AT 53.1 33 0.00071 25.9 4.8 54 6-73 155-208 (243)
461 PRK14245 phosphate ABC transpo 53.0 37 0.00081 25.9 5.1 53 6-73 157-209 (250)
462 PRK13642 cbiO cobalt transport 53.0 34 0.00073 26.7 4.9 56 5-73 150-205 (277)
463 COG2874 FlaH Predicted ATPases 52.9 23 0.0005 27.2 3.7 65 2-78 112-176 (235)
464 PRK07914 hypothetical protein; 52.9 1.2E+02 0.0025 24.3 8.5 108 43-160 80-193 (320)
465 PRK14266 phosphate ABC transpo 52.8 35 0.00077 26.0 5.0 55 5-74 156-210 (250)
466 PRK13647 cbiO cobalt transport 52.6 35 0.00076 26.6 5.0 55 5-73 148-202 (274)
467 TIGR03269 met_CoM_red_A2 methy 52.6 31 0.00067 29.6 5.0 56 5-73 178-233 (520)
468 cd03245 ABCC_bacteriocin_expor 52.4 61 0.0013 24.0 6.1 51 6-71 151-201 (220)
469 PRK14259 phosphate ABC transpo 52.3 41 0.00089 26.1 5.3 53 6-73 165-217 (269)
470 PRK14242 phosphate transporter 52.2 39 0.00084 25.8 5.1 53 6-73 160-212 (253)
471 PF02269 TFIID-18kDa: Transcri 52.0 7.6 0.00016 25.4 1.0 49 117-165 23-71 (93)
472 PRK13548 hmuV hemin importer A 51.5 34 0.00073 26.4 4.7 48 13-73 158-205 (258)
473 COG3604 FhlA Transcriptional r 51.5 68 0.0015 27.9 6.6 114 15-141 319-456 (550)
474 PRK14268 phosphate ABC transpo 51.4 39 0.00085 26.0 5.0 53 6-73 165-217 (258)
475 PRK14260 phosphate ABC transpo 51.4 35 0.00075 26.3 4.8 53 6-73 161-213 (259)
476 TIGR01288 nodI ATP-binding ABC 51.4 38 0.00082 26.8 5.1 54 6-73 146-199 (303)
477 TIGR03771 anch_rpt_ABC anchore 51.3 37 0.0008 25.5 4.8 53 6-72 124-176 (223)
478 PRK14235 phosphate transporter 51.0 36 0.00077 26.4 4.8 53 6-73 174-226 (267)
479 PRK14255 phosphate ABC transpo 51.0 41 0.00088 25.7 5.1 53 6-73 159-211 (252)
480 PRK13695 putative NTPase; Prov 50.9 21 0.00047 25.6 3.3 72 13-105 96-170 (174)
481 PRK14247 phosphate ABC transpo 50.8 47 0.001 25.3 5.4 52 6-72 157-208 (250)
482 PRK15134 microcin C ABC transp 50.8 30 0.00065 29.7 4.7 56 5-73 166-221 (529)
483 PRK14274 phosphate ABC transpo 50.6 44 0.00095 25.7 5.2 53 6-73 166-218 (259)
484 TIGR02314 ABC_MetN D-methionin 50.3 34 0.00074 27.9 4.7 54 6-72 151-204 (343)
485 KOG2170 ATPase of the AAA+ sup 50.3 1.2E+02 0.0027 24.6 7.6 24 3-26 168-191 (344)
486 PRK14272 phosphate ABC transpo 50.2 40 0.00088 25.6 4.9 54 5-73 158-211 (252)
487 PRK13631 cbiO cobalt transport 50.1 36 0.00077 27.4 4.7 55 5-73 186-240 (320)
488 PRK11144 modC molybdate transp 50.1 32 0.0007 28.0 4.6 55 5-72 138-192 (352)
489 PRK14239 phosphate transporter 50.0 45 0.00098 25.4 5.2 52 6-72 159-210 (252)
490 cd00267 ABC_ATPase ABC (ATP-bi 50.0 37 0.00079 23.8 4.4 54 6-73 91-144 (157)
491 COG4619 ABC-type uncharacteriz 50.0 56 0.0012 24.4 5.2 60 12-90 150-209 (223)
492 PRK06526 transposase; Provisio 50.0 19 0.00041 28.1 3.0 43 13-69 159-201 (254)
493 PRK14236 phosphate transporter 49.9 43 0.00094 26.0 5.1 53 6-73 179-231 (272)
494 PRK05629 hypothetical protein; 49.9 1.1E+02 0.0023 24.5 7.5 107 44-160 81-191 (318)
495 PRK14275 phosphate ABC transpo 49.7 44 0.00096 26.2 5.2 54 5-73 192-245 (286)
496 COG4598 HisP ABC-type histidin 49.6 38 0.00082 25.6 4.4 50 4-66 161-210 (256)
497 PRK14256 phosphate ABC transpo 49.6 39 0.00085 25.8 4.8 53 6-73 159-211 (252)
498 PHA00350 putative assembly pro 49.4 15 0.00033 30.6 2.6 70 14-86 82-160 (399)
499 PRK10744 pstB phosphate transp 49.4 46 0.001 25.6 5.2 52 6-72 167-218 (260)
500 PRK11124 artP arginine transpo 49.3 41 0.00089 25.5 4.8 54 6-73 152-205 (242)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=271.86 Aligned_cols=166 Identities=57% Similarity=0.891 Sum_probs=161.2
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|++|+.|+.++||||||||+|+++.+|.+...+.+.+.+|.+-+||++||++.+..+|-||++||+++-|||||+|||
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPG 311 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPG 311 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|||+.|+||+||.+.|.+||+.+.++..+.+++||+.+|..|+|+||+||.++|.+|.+.|++..+..++++||..|+.+
T Consensus 312 R~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 312 RFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred cccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCC
Q 030674 161 NVKKPD 166 (173)
Q Consensus 161 ~~p~~~ 166 (173)
+.....
T Consensus 392 V~~~~~ 397 (406)
T COG1222 392 VVKKKK 397 (406)
T ss_pred HHhccc
Confidence 887543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-39 Score=266.91 Aligned_cols=168 Identities=43% Similarity=0.680 Sum_probs=155.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
|+++|++|+..+||||||||+|++...|++... ....|+++++|++||++....+|+|||+||+|+.||+||+||||
T Consensus 516 ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 516 IREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcc
Confidence 799999999999999999999999999963322 56679999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--CCccCHHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN--RYVILPKDFEKGYR 159 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~--~~~i~~~d~~~al~ 159 (173)
||+.||+|+||.+.|.+||+.++++.++.+++|+.++|+.|+||||+||.++|++|+..|++++ ...+++++|++|++
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~ 672 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQHFEEALK 672 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 45799999999999
Q ss_pred hhCCCC-CcccccC
Q 030674 160 TNVKKP-DTDFEFY 172 (173)
Q Consensus 160 ~~~p~~-~~~~~~~ 172 (173)
..+|+. ..++++|
T Consensus 673 ~~r~s~~~~~~~~Y 686 (693)
T KOG0730|consen 673 AVRPSLTSELLEKY 686 (693)
T ss_pred hhcccCCHHHHHHH
Confidence 999985 4444444
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=252.19 Aligned_cols=162 Identities=35% Similarity=0.611 Sum_probs=148.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
+|.+|+.|+.++||||||||+|+|++.|+... .+...|++++||++||++....+|+|||+||+|+-+|||++||||
T Consensus 593 VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGR 669 (802)
T KOG0733|consen 593 VRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGR 669 (802)
T ss_pred HHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCc
Confidence 68999999999999999999999999996554 445569999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHc--cCCCCCcCCHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHhc------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTA--KMNLSDEVDLEDYVSRPD--KISAAEIAAICQEAGMHAVRKN------------ 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~--~~~~~~~~~~~~la~~t~--g~s~~di~~l~~~a~~~a~~~~------------ 145 (173)
||..++++.|+.++|..||+..++ +..+++++|++++|..+. ||||+||..+|++|...|.++.
T Consensus 670 lDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~ 749 (802)
T KOG0733|consen 670 LDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVT 749 (802)
T ss_pred cCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccc
Confidence 999999999999999999999999 677889999999999876 9999999999999999998873
Q ss_pred ----CCccCHHHHHHHHHhhCCCCC
Q 030674 146 ----RYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 146 ----~~~i~~~d~~~al~~~~p~~~ 166 (173)
.-.++..+|.+|+.+++|+..
T Consensus 750 ~~~~~~~~t~~hF~eA~~~i~pSv~ 774 (802)
T KOG0733|consen 750 VRSSTIIVTYKHFEEAFQRIRPSVS 774 (802)
T ss_pred eeeeeeeecHHHHHHHHHhcCCCcc
Confidence 013788899999999999963
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-37 Score=249.36 Aligned_cols=159 Identities=35% Similarity=0.533 Sum_probs=149.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
+|++|..|++++||||||||+|+++++|..... + ...+.++++|.+||+++++.+|+||++||.|+.||+||.||||
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGR 461 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--H-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGR 461 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHH--H-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCc
Confidence 689999999999999999999999998833222 1 6679999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|.+|.||...|.+||++|+.+..++.++|+.-+|+-|.||||+||+++++.|+..|...+...+++++|+.|-+++
T Consensus 462 FD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 462 FDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred cceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CC
Q 030674 162 VK 163 (173)
Q Consensus 162 ~p 163 (173)
..
T Consensus 542 lM 543 (752)
T KOG0734|consen 542 LM 543 (752)
T ss_pred ee
Confidence 64
No 5
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-35 Score=221.01 Aligned_cols=173 Identities=86% Similarity=1.249 Sum_probs=169.1
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|++|..|++++|+||||||+|++..+|.+.+.+.+.+.++++-.++++||++.+..+|-||++||+.+.|||+++|||
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpg 315 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPG 315 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|+|+.|+||.|+.-+++-+|.....+..+++++|++++..+.+..|++||..+|++|.+.|++.++..+.+.||+.|.+.
T Consensus 316 rldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~ 395 (408)
T KOG0727|consen 316 RLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKT 395 (408)
T ss_pred cccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccccCC
Q 030674 161 NVKKPDTDFEFYK 173 (173)
Q Consensus 161 ~~p~~~~~~~~~~ 173 (173)
..+...+++++||
T Consensus 396 ~vk~~~~~~~fyk 408 (408)
T KOG0727|consen 396 VVKKDETQFEFYK 408 (408)
T ss_pred hcCCcccchhccC
Confidence 9999999999997
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.2e-34 Score=233.64 Aligned_cols=172 Identities=87% Similarity=1.296 Sum_probs=160.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+||||||||+|.++.+|.+...+.+....+.+..+++.++++....+++||+|||+++.||++++||||
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GR 306 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGR 306 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCc
Confidence 67899999999999999999999998886655555666778999999999998888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|+|+.|+.++|..||+.++.+..+..++++..+|..|+||||+||.++|.+|...|.++++..++.+||..|++++
T Consensus 307 fd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCC
Q 030674 162 VKKPDTDFEFYK 173 (173)
Q Consensus 162 ~p~~~~~~~~~~ 173 (173)
.......+.||.
T Consensus 387 ~~~~~~~~~~~~ 398 (398)
T PTZ00454 387 VRKTDRDYDFYS 398 (398)
T ss_pred HhccccchhccC
Confidence 888777788874
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=244.74 Aligned_cols=170 Identities=32% Similarity=0.537 Sum_probs=152.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--CCCCeEEEEEeCCCCCCCccccCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
+|+||++||.-+||||||||+|++.++|+.+.++. +.+.|+++++|.+||++. ...+|+||++||+|+-|||||+||
T Consensus 753 VR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRP 831 (953)
T KOG0736|consen 753 VREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRP 831 (953)
T ss_pred HHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCC
Confidence 68999999999999999999999999997655433 456799999999999996 456899999999999999999999
Q ss_pred CCccceecCCCCC-HHHHHHHHHHHHccCCCCCcCCHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhc------------
Q 030674 80 GRLDRKIEFPLPD-RRQKRLVFQVCTAKMNLSDEVDLEDYVSRP-DKISAAEIAAICQEAGMHAVRKN------------ 145 (173)
Q Consensus 80 grf~~~i~~~~p~-~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~g~s~~di~~l~~~a~~~a~~~~------------ 145 (173)
||||+.+|+++++ .+.+..+|+...++.++++++++.++|+.| +.|||+|+..+|.+|...|+++.
T Consensus 832 GRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~ 911 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEE 911 (953)
T ss_pred CccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999988 788899999999999999999999999999 68999999999999999999884
Q ss_pred -----CCccCHHHHHHHHHhhCCCC-CcccccC
Q 030674 146 -----RYVILPKDFEKGYRTNVKKP-DTDFEFY 172 (173)
Q Consensus 146 -----~~~i~~~d~~~al~~~~p~~-~~~~~~~ 172 (173)
.-.++++||.++.++++|+. .++++.|
T Consensus 912 e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 912 EQESSSVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred ccCCceEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 12699999999999999995 4445544
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=230.11 Aligned_cols=168 Identities=36% Similarity=0.576 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCC----CCeEEEEEeCCCCCCCccc
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT----VNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~al 76 (173)
|+|-+|+.|+.++|++|||||||+|+.+|+.. +.++.++|+.+.||-+||++..+ .-|+|+|+||.|++||.|+
T Consensus 292 lvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAl 369 (491)
T KOG0738|consen 292 LVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEAL 369 (491)
T ss_pred HHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHH
Confidence 57889999999999999999999999999654 66777889999999999998443 2399999999999999999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-----------
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN----------- 145 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~----------- 145 (173)
+| ||.+.|++|.|+.+.|..+++..++....+++++++.+|..++||||+||.++|++|.+.+.++.
T Consensus 370 rR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~ 447 (491)
T KOG0738|consen 370 RR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQ 447 (491)
T ss_pred HH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhh
Confidence 99 99999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ------CCccCHHHHHHHHHhhCCCCC-cccccC
Q 030674 146 ------RYVILPKDFEKGYRTNVKKPD-TDFEFY 172 (173)
Q Consensus 146 ------~~~i~~~d~~~al~~~~p~~~-~~~~~~ 172 (173)
+.+++.+||+.|++++.|+.. ..+++|
T Consensus 448 lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ 481 (491)
T KOG0738|consen 448 LAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKY 481 (491)
T ss_pred hhhhccccccchhhHHHHHHHcCcCCCHHHHHHH
Confidence 247999999999999999976 555555
No 9
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=213.48 Aligned_cols=172 Identities=51% Similarity=0.822 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|+.|..|++.+|+||||||+|+++.+|.+++...+.+.++..-.+++++|+++++..|-||++||+.+-|||+|+|.|
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSG 331 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSG 331 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|+|+.|+||.|+.+.|.+|++.+-++....++++|+++|..|++|.|++.+++|-+|.+.|.+++...++.+||..+|..
T Consensus 332 RLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~e 411 (424)
T KOG0652|consen 332 RLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILE 411 (424)
T ss_pred cccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcccccC
Q 030674 161 NVKKPDTDFEFY 172 (173)
Q Consensus 161 ~~p~~~~~~~~~ 172 (173)
++...+..+.+|
T Consensus 412 VqakKka~l~yy 423 (424)
T KOG0652|consen 412 VQAKKKASLNYY 423 (424)
T ss_pred HHHhhhhccccc
Confidence 887777666666
No 10
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-33 Score=209.66 Aligned_cols=165 Identities=48% Similarity=0.820 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|.+|-.|++++|+|||+||+|+++..|.....+.+.+.++..-.+++++|++..++++-||++||+++-||+|++|||
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpg 307 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPG 307 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCC
Confidence 47899999999999999999999999999888888888889999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|+|+.|+||+|+.+.|.+|++.+-++..+...+++..+|..+.|.|++++..+|.+|.+.|.+..+..+|++||+-|+.+
T Consensus 308 ridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 308 RIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred cccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999889999999999987
Q ss_pred hCCCC
Q 030674 161 NVKKP 165 (173)
Q Consensus 161 ~~p~~ 165 (173)
+....
T Consensus 388 vm~k~ 392 (404)
T KOG0728|consen 388 VMQKD 392 (404)
T ss_pred HHhcc
Confidence 76543
No 11
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=231.00 Aligned_cols=161 Identities=42% Similarity=0.640 Sum_probs=154.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
+|++|..|++++||||||||+|++...|+....+.+.+-.+.+++++.+||+...+.+|+++++||+|+-+|+||.||||
T Consensus 231 VRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgR 310 (596)
T COG0465 231 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGR 310 (596)
T ss_pred HHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCC
Confidence 68999999999999999999999999997766667777789999999999999988899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|.++.||...|++|++.+.++.++++++++..+|+.|+||+++|+++++++|+..++++++..++..||.+|+.++
T Consensus 311 FDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 311 FDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred cceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 030674 162 V 162 (173)
Q Consensus 162 ~ 162 (173)
.
T Consensus 391 ~ 391 (596)
T COG0465 391 I 391 (596)
T ss_pred h
Confidence 6
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=229.98 Aligned_cols=140 Identities=38% Similarity=0.632 Sum_probs=129.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCC----CCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT----VNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~vi~ttn~~~~ld~al~ 77 (173)
||++|+.|+.++||||||||||++.++|...+ .+-.+|++++|++.||++... .+|+||++||+|+.||++|+
T Consensus 271 iRelF~~A~~~aPcivFiDeIDAI~pkRe~aq---reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 271 IRELFDQAKSNAPCIVFIDEIDAITPKREEAQ---REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred HHHHHHHHhccCCeEEEeecccccccchhhHH---HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 79999999999999999999999999984422 223359999999999999543 57999999999999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
|+||||+.|.++.|+..+|.+||+.++++..++.++++..+|..|+||.|+||.++|.+|+..|+++
T Consensus 348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 348 RAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred ccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987
No 13
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.3e-32 Score=220.07 Aligned_cols=167 Identities=53% Similarity=0.835 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+||||||||+|.++..+.+...+.+....+.+..++..++++...+++.||+|||+++.+|++++||||
T Consensus 213 i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgR 292 (389)
T PRK03992 213 VRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGR 292 (389)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCcc
Confidence 67899999999999999999999998886655555666778888999999998888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||..|+|++|+.++|.+||+.++.+..+..++++..+|..|+|||++||.++|.+|...|++++...|+.+||.+|++.+
T Consensus 293 fd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred CceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999988888889999999999999999999999999999999998899999999999999
Q ss_pred CCCCCcc
Q 030674 162 VKKPDTD 168 (173)
Q Consensus 162 ~p~~~~~ 168 (173)
+++...+
T Consensus 373 ~~~~~~~ 379 (389)
T PRK03992 373 MGKEEKD 379 (389)
T ss_pred hcccccc
Confidence 9887654
No 14
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-32 Score=232.10 Aligned_cols=161 Identities=43% Similarity=0.678 Sum_probs=150.2
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccccc-CCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARF-DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+|.+|..|+.++||||||||+|++...|+ ....+...+....+++++.+||+...+..|+|+++||+++.||+|++|||
T Consensus 392 vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpG 471 (774)
T KOG0731|consen 392 VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPG 471 (774)
T ss_pred HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCC
Confidence 68999999999999999999999999984 33445556667999999999999988889999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
|||+.|+++.|+..+|..|++.+++..+++ +++++..+|..|.||||+||.++|++|+..|.+.+...|+..||++|++
T Consensus 472 Rfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 472 RFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred ccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 999999999999999999999999999886 7789999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 030674 160 TNV 162 (173)
Q Consensus 160 ~~~ 162 (173)
+.+
T Consensus 552 Rvi 554 (774)
T KOG0731|consen 552 RVI 554 (774)
T ss_pred HHh
Confidence 655
No 15
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-33 Score=213.01 Aligned_cols=167 Identities=53% Similarity=0.927 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|.+|+.|..++|||+||||||+++.+|.+...+...+.++..-.+|+++|++.....|-||++||.++.|||||+|||
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPG 345 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPG 345 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|+|+.|+||.||...++.||..+..+..+..+++++++.-.-+.+|++||.++|.+|...|.+..+..++.+||..|.++
T Consensus 346 rIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 346 RIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEK 425 (440)
T ss_pred ccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999988
Q ss_pred hCCCCCc
Q 030674 161 NVKKPDT 167 (173)
Q Consensus 161 ~~p~~~~ 167 (173)
+.-+.++
T Consensus 426 V~~~K~~ 432 (440)
T KOG0726|consen 426 VLYKKKE 432 (440)
T ss_pred HHHhccc
Confidence 7655433
No 16
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=8.9e-32 Score=224.40 Aligned_cols=164 Identities=24% Similarity=0.362 Sum_probs=144.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++++|+.|+..+||||||||+|.++..+.. .+.++...++++.|++.+++ ..++|+||+|||+++.||++++||||
T Consensus 307 l~~~f~~A~~~~P~IL~IDEID~~~~~~~~--~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GR 382 (489)
T CHL00195 307 MRQMIRIAEALSPCILWIDEIDKAFSNSES--KGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGR 382 (489)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhhccccC--CCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCc
Confidence 688999999999999999999999876532 23344567899999999984 45689999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC--CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLS--DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~--~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
||+.++++.|+.++|.+||+.++.+.... .+.++..+|..|+||||+||+++|.+|...|...++ .++.+||..|++
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~ 461 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALK 461 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHH
Confidence 99999999999999999999999886543 468899999999999999999999999999987764 799999999999
Q ss_pred hhCCCCCcccc
Q 030674 160 TNVKKPDTDFE 170 (173)
Q Consensus 160 ~~~p~~~~~~~ 170 (173)
.++|.+..+.+
T Consensus 462 ~~~Pls~~~~e 472 (489)
T CHL00195 462 QFIPLAQTEKE 472 (489)
T ss_pred hcCCCcccCHH
Confidence 99999766554
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.1e-31 Score=231.96 Aligned_cols=164 Identities=41% Similarity=0.669 Sum_probs=148.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+||||||||+|.+++.++.... .....+++++|+..++++...++++||+|||+|+.||++++||||
T Consensus 535 i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 535 IREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 689999999999999999999999988854322 234568999999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
||+.|++|+|+.++|.+||+.++++..+.+++++..+|..|+|||++||.++|++|...++++.
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~ 692 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEF 692 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccc
Confidence 9999999999999999999999999888888999999999999999999999999999888752
Q ss_pred --CCccCHHHHHHHHHhhCCCCCc
Q 030674 146 --RYVILPKDFEKGYRTNVKKPDT 167 (173)
Q Consensus 146 --~~~i~~~d~~~al~~~~p~~~~ 167 (173)
...++.+||..|+++++|+..+
T Consensus 693 ~~~~~i~~~~f~~al~~~~ps~~~ 716 (733)
T TIGR01243 693 LKDLKVEMRHFLEALKKVKPSVSK 716 (733)
T ss_pred cccCcccHHHHHHHHHHcCCCCCH
Confidence 1269999999999999999644
No 18
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=9.6e-31 Score=220.14 Aligned_cols=162 Identities=42% Similarity=0.642 Sum_probs=148.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+||||||||+|.++..+.....+.+....+.++.|+..++++..+.+++||+|||+|+.||++++||||
T Consensus 136 l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gR 215 (495)
T TIGR01241 136 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGR 215 (495)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCc
Confidence 67899999999999999999999998875543444455668899999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|+++.|+.++|.+||+.++.......+.++..+|..|.|||++||.++|++|...+.++++..++.+||..|+.++
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988777788999999999999999999999999999999888899999999999988
Q ss_pred CC
Q 030674 162 VK 163 (173)
Q Consensus 162 ~p 163 (173)
..
T Consensus 296 ~~ 297 (495)
T TIGR01241 296 IA 297 (495)
T ss_pred hc
Confidence 64
No 19
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.1e-30 Score=225.06 Aligned_cols=163 Identities=39% Similarity=0.601 Sum_probs=151.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+||||||||+|.++..|+....+.+....+.++.++..+|++..+.++++|+|||+|+.||++++||||
T Consensus 233 ~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgR 312 (644)
T PRK10733 233 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGR 312 (644)
T ss_pred HHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcc
Confidence 57899999999999999999999998886555555556678999999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|+++.|+.++|.+||+.++++.++.+++++..+|..|.|||++||.++|++|+..|.+.++..++..||..|+.++
T Consensus 313 fdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 313 FDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred cceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 030674 162 VKK 164 (173)
Q Consensus 162 ~p~ 164 (173)
.+.
T Consensus 393 ~~g 395 (644)
T PRK10733 393 MMG 395 (644)
T ss_pred hcc
Confidence 654
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=8.4e-31 Score=215.82 Aligned_cols=163 Identities=54% Similarity=0.948 Sum_probs=151.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+.++||||||||+|.++.++.....+.+....+.+..+++.++++....++.||++||+++.||++++||||
T Consensus 265 vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGR 344 (438)
T PTZ00361 265 VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGR 344 (438)
T ss_pred HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCe
Confidence 68899999999999999999999998886666666666778888999999998777789999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+|+.|+.++|.+||+.++.+..+..++++..++..|+|||++||.++|.+|...|.++++..|+.+||..|++++
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 99999999999999999999999998888889999999999999999999999999999999998899999999999998
Q ss_pred CCC
Q 030674 162 VKK 164 (173)
Q Consensus 162 ~p~ 164 (173)
...
T Consensus 425 ~~~ 427 (438)
T PTZ00361 425 LYR 427 (438)
T ss_pred Hhh
Confidence 543
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=219.56 Aligned_cols=162 Identities=38% Similarity=0.642 Sum_probs=149.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+||||||||+|++++.|+....+.. .+++++++.+++++...++|+||++||.|+.+|++++||||
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCc
Confidence 789999999999999999999999998855444332 58999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCC--CCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-CCccCHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNL--SDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-RYVILPKDFEKGY 158 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~--~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-~~~i~~~d~~~al 158 (173)
||..+++++|+.++|.++|+.++.+... ..++++..+++.|+|||++||+.+|.+|...+.+.. ...++.+||..|+
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDAL 480 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHH
Confidence 9999999999999999999999996544 478999999999999999999999999999999998 7789999999999
Q ss_pred HhhCCCCC
Q 030674 159 RTNVKKPD 166 (173)
Q Consensus 159 ~~~~p~~~ 166 (173)
+..+|+..
T Consensus 481 ~~~~p~~~ 488 (494)
T COG0464 481 KKIKPSVT 488 (494)
T ss_pred HhcCCCCC
Confidence 99999865
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=7.2e-31 Score=199.44 Aligned_cols=161 Identities=30% Similarity=0.503 Sum_probs=146.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
|+.+|+.|++.+|||+||||+|++.-.|.-++-- +....+++.||++||+++.+.+|+.|++||+|+.||+|+++ |
T Consensus 199 Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--R 274 (368)
T COG1223 199 IHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--R 274 (368)
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--h
Confidence 7899999999999999999999999877433222 23358999999999999999999999999999999999999 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHH-HHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAA-ICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~-l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|...|+|..|+.++|.+|++.|.+..++.-+.++..++..|.|||++||.. ++..|.+.|+..++..++.+|++.|+++
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 999999999999999999999999999998889999999999999999987 7778899999999999999999999998
Q ss_pred hCCCCC
Q 030674 161 NVKKPD 166 (173)
Q Consensus 161 ~~p~~~ 166 (173)
.++...
T Consensus 355 ~r~~r~ 360 (368)
T COG1223 355 ERKRRA 360 (368)
T ss_pred hccccC
Confidence 776543
No 23
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=2.3e-30 Score=234.94 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=133.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---CCCCeEEEEEeCCCCCCCccccC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---QTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~v~vi~ttn~~~~ld~al~r 78 (173)
|+.+|+.|++++||||||||||+++.+. +. ...++.+++.|++.. ...+|+||||||+|+.|||||+|
T Consensus 1721 Ir~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLR 1791 (2281)
T CHL00206 1721 ITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIA 1791 (2281)
T ss_pred HHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcC
Confidence 6789999999999999999999998652 01 124788999998763 35689999999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHH--ccCCCCC-cCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHH
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCT--AKMNLSD-EVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 155 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l--~~~~~~~-~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 155 (173)
|||||+.|+++.|+..+|++++..++ ++..+.. .+++..+|..|.|||||||+++|++|+..|+++++..|+.+++.
T Consensus 1792 PGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~ 1871 (2281)
T CHL00206 1792 PNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIR 1871 (2281)
T ss_pred CCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Confidence 99999999999999999999988654 3444443 36899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 030674 156 KGYRTNVKK 164 (173)
Q Consensus 156 ~al~~~~p~ 164 (173)
.|++++..-
T Consensus 1872 ~Al~Rq~~g 1880 (2281)
T CHL00206 1872 SALHRQTWD 1880 (2281)
T ss_pred HHHHHHHhh
Confidence 999988754
No 24
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=7.1e-30 Score=218.78 Aligned_cols=160 Identities=41% Similarity=0.621 Sum_probs=148.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+||||||||+|.++..|+....+.+....+.++.|+..++++..+.+++||++||+++.+|++++||||
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 57899999999999999999999998876655555666678899999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|+++.|+.++|.+||+.+++.....++.++..+|..|.|||++||++++++|+..+.+++...++.+||.+|++++
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999987777888999999999999999999999999999999999899999999999987
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-30 Score=198.68 Aligned_cols=165 Identities=48% Similarity=0.778 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++|.+|+.|+...-||||+||+|++++.|.+...+.+.+.++..-.+++++|++.+..++-|+++||+|+.|||||.|||
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpg 337 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPG 337 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCc
Confidence 47999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|+|+.++|+.|+.+.|..||+.+.+......++-|+-+|..|..-|++||..+|.+|.+.|++..++..|.+||..|+.+
T Consensus 338 rldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~k 417 (435)
T KOG0729|consen 338 RLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNK 417 (435)
T ss_pred ccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999998
Q ss_pred hCCCC
Q 030674 161 NVKKP 165 (173)
Q Consensus 161 ~~p~~ 165 (173)
+.+..
T Consensus 418 vvkgy 422 (435)
T KOG0729|consen 418 VVKGY 422 (435)
T ss_pred HHHHH
Confidence 87654
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=213.09 Aligned_cols=140 Identities=37% Similarity=0.622 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
+|.+|++|+..+|||+|+||+|++.++|+-...+-. .|+++++|++||+..+-.+|.|+|+|++|+-|||||+||||
T Consensus 749 vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGR 825 (952)
T KOG0735|consen 749 VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGR 825 (952)
T ss_pred HHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCc
Confidence 689999999999999999999999999976555544 49999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
+|+.++.+.|+..+|.+|++.+......++++|++.+|.+|+||||+||..++-.|...|+++
T Consensus 826 lD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 826 LDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888889999999999999999999999999998887765
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.1e-28 Score=200.69 Aligned_cols=160 Identities=54% Similarity=0.827 Sum_probs=147.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+|+||+|||+|.++..+.....+.+....+.+..++..++++...+++.||+|||+++.+|++++||||
T Consensus 204 i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~gr 283 (364)
T TIGR01242 204 VREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGR 283 (364)
T ss_pred HHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCccc
Confidence 57899999999999999999999998776555555566678888999999988777899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+.|+++.|+.++|.+||+.++....+..++++..++..|+||+++||.++|.+|...|+++++..|+.+||..|++++
T Consensus 284 fd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 284 FDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred CceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999888877778999999999999999999999999999999999999999999999875
No 28
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=196.17 Aligned_cols=160 Identities=30% Similarity=0.494 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-CCCCCeEEEEEeCCCCCCCccccCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
+++.+|+.|+++.|+||||||+|++++.|+ .+.++..+|+...||-+|++. ..+.+|+|+++||.|+.||+|++|
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~---enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR- 288 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRS---ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR- 288 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCC---CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH-
Confidence 478999999999999999999999998873 344556679999999999999 566789999999999999999999
Q ss_pred CCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC------------
Q 030674 80 GRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR------------ 146 (173)
Q Consensus 80 grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~------------ 146 (173)
||++.||+|.|+...|..+|+.++...... .+-|+.+++++|+||||+||.-++++|.+..++.-.
T Consensus 289 -RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s 367 (439)
T KOG0739|consen 289 -RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPS 367 (439)
T ss_pred -HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCC
Confidence 999999999999999999999999887655 567899999999999999999999999988877631
Q ss_pred ----------------------------------CccCHHHHHHHHHhhCCCC
Q 030674 147 ----------------------------------YVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 147 ----------------------------------~~i~~~d~~~al~~~~p~~ 165 (173)
+++|..||..++.+.+|..
T Consensus 368 ~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv 420 (439)
T KOG0739|consen 368 NPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV 420 (439)
T ss_pred ChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC
Confidence 3799999999999999985
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.9e-28 Score=189.81 Aligned_cols=159 Identities=31% Similarity=0.501 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCC--CeEEEEEeCCCCCCCccccC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV--NVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~v~vi~ttn~~~~ld~al~r 78 (173)
+++.+|..|.+.+||||||||+|++++.| ..+.++....+.++|+..+|++..+. +|+|+|+||+|.++|.|++|
T Consensus 174 lv~AvFslAsKl~P~iIFIDEvds~L~~R---~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR 250 (386)
T KOG0737|consen 174 LVKAVFSLASKLQPSIIFIDEVDSFLGQR---RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR 250 (386)
T ss_pred HHHHHHhhhhhcCcceeehhhHHHHHhhc---ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH
Confidence 36789999999999999999999999888 35666777888999999999996554 59999999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-------------
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------- 145 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------- 145 (173)
|+-+.++++.|+..+|.+||+.+++..++++++|+.++|.+|+||||+||.++|..|+...++.-
T Consensus 251 --R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~ 328 (386)
T KOG0737|consen 251 --RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKA 328 (386)
T ss_pred --hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999987777641
Q ss_pred ---------------CCccCHHHHHHHHHhhCCC
Q 030674 146 ---------------RYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 146 ---------------~~~i~~~d~~~al~~~~p~ 164 (173)
.+++.++||..++..+-++
T Consensus 329 ~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 329 IADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred hhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2578888888888855444
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-27 Score=196.62 Aligned_cols=158 Identities=37% Similarity=0.565 Sum_probs=146.3
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~-P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
||++|+.|..++ |++|+|||+|+++++|..... ...++.+++++.+++++...+++|+++||+|+.||++++| |
T Consensus 266 LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-g 340 (693)
T KOG0730|consen 266 LRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-G 340 (693)
T ss_pred HHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-C
Confidence 789999999999 999999999999998844333 4569999999999999988999999999999999999999 9
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|||+.+.++.|+..+|.+|++.+...++..+++++..+|..|.||+++||..+|..|...+.++ +.++|..|+..
T Consensus 341 Rfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~ 415 (693)
T KOG0730|consen 341 RFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMG 415 (693)
T ss_pred CCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhc
Confidence 9999999999999999999999999998887899999999999999999999999999999988 78999999999
Q ss_pred hCCCCCccc
Q 030674 161 NVKKPDTDF 169 (173)
Q Consensus 161 ~~p~~~~~~ 169 (173)
++|+...+.
T Consensus 416 i~psa~Re~ 424 (693)
T KOG0730|consen 416 IRPSALREI 424 (693)
T ss_pred CCchhhhhe
Confidence 999975543
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=187.98 Aligned_cols=167 Identities=30% Similarity=0.466 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--CCCCCeEEEEEeCCCCCCCccccC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
++|.+|..|+..+|+||||||+|.++.+|.+.... ...++..+|+.++++. ...++|+||+|||.|+.+|.+++|
T Consensus 233 ~vralf~vAr~~qPsvifidEidslls~Rs~~e~e---~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 233 LVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred HHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 58999999999999999999999999998333333 3348888888888876 445689999999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc------------
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------ 145 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------ 145 (173)
||...+++|.|+.+.|..+|..++.+.... .+.+++.+++.|+|||++||..+|.+|++...+..
T Consensus 310 --rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~ 387 (428)
T KOG0740|consen 310 --RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDAD 387 (428)
T ss_pred --HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchh
Confidence 999999999999999999999999887444 55789999999999999999999999976555442
Q ss_pred -CCccCHHHHHHHHHhhCCC-CCcccccC
Q 030674 146 -RYVILPKDFEKGYRTNVKK-PDTDFEFY 172 (173)
Q Consensus 146 -~~~i~~~d~~~al~~~~p~-~~~~~~~~ 172 (173)
-++++..||.++++.++|+ +++.++.|
T Consensus 388 ~~r~i~~~df~~a~~~i~~~~s~~~l~~~ 416 (428)
T KOG0740|consen 388 KIRPITYPDFKNAFKNIKPSVSLEGLEKY 416 (428)
T ss_pred ccCCCCcchHHHHHHhhccccCccccchh
Confidence 2579999999999999988 46666554
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-26 Score=177.88 Aligned_cols=162 Identities=49% Similarity=0.808 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+||+.|..|+.+.|||||+||+|++++.+.+...+.+.+.++.+..++++|++...-++|-+|+|||+|+-|||+|+|||
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG 292 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG 292 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCc
Confidence 58999999999999999999999999999777788888889999999999999999999999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|.|+.|++|.|+...|..+++..-........++.+.+.+.++||.++|+.+.|.+|-..+++..+..+-.+||..++++
T Consensus 293 Rldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 293 RLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHH
Confidence 99999999999999999999988777766677889999999999999999999999999999998888999999999987
Q ss_pred hC
Q 030674 161 NV 162 (173)
Q Consensus 161 ~~ 162 (173)
+.
T Consensus 373 ~~ 374 (388)
T KOG0651|consen 373 QA 374 (388)
T ss_pred HH
Confidence 65
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.92 E-value=2.5e-24 Score=180.02 Aligned_cols=161 Identities=30% Similarity=0.446 Sum_probs=129.2
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+|+.|+.. .||||||||+|.++.+|+.... +....+++++|++.|+++...++++||+|||+++.||++++
T Consensus 274 ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s--~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALl 351 (512)
T TIGR03689 274 IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS--SDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAIL 351 (512)
T ss_pred HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc--chHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhc
Confidence 57889998864 6999999999999988743222 22235788999999999988889999999999999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccC-CCC---------CcCCHHHH-----------------------------
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-NLS---------DEVDLEDY----------------------------- 118 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~-~~~---------~~~~~~~l----------------------------- 118 (173)
||||||.+|+|++|+.++|.+||+.++... ++. ...++..+
T Consensus 352 RpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~ 431 (512)
T TIGR03689 352 RPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEV 431 (512)
T ss_pred CccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceee
Confidence 999999999999999999999999998642 221 01111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHhc----CCccCHHHHHHHHHhhCCC
Q 030674 119 VSRPDKISAAEIAAICQEAGMHAVRKN----RYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 119 a~~t~g~s~~di~~l~~~a~~~a~~~~----~~~i~~~d~~~al~~~~p~ 164 (173)
...++.+||++|+++|.+|...|+++. ...++.+||..|+......
T Consensus 432 l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 432 LYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred EeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcc
Confidence 123577999999999999999998773 4579999999999876544
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.3e-25 Score=192.47 Aligned_cols=164 Identities=34% Similarity=0.509 Sum_probs=145.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+.++|+|||+||||.|.+.|++.+...+. .+++.+|..|+++...+.|+||++||+|+.+|++++||||
T Consensus 352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~---SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgr 428 (1080)
T KOG0732|consen 352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHA---SIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGR 428 (1080)
T ss_pred HHHHHHHHhccCceEEeccccccccccccchHHHhhh---hHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcc
Confidence 6889999999999999999999999998655554444 8899999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC--------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR-------------- 146 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~-------------- 146 (173)
||++++|+.|+.+.|.+|+.......... ....+..+|..|.||-|+||+.+|.+|+..+.++.-
T Consensus 429 fdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~ 508 (1080)
T KOG0732|consen 429 FDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDV 508 (1080)
T ss_pred cceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccc
Confidence 99999999999999999999988776533 223467899999999999999999999999988741
Q ss_pred --CccCHHHHHHHHHhhCCCCCcc
Q 030674 147 --YVILPKDFEKGYRTNVKKPDTD 168 (173)
Q Consensus 147 --~~i~~~d~~~al~~~~p~~~~~ 168 (173)
..+...||..|+.++.|+....
T Consensus 509 ~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 509 ALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred hhhhhhhHhhhhhhhccCCCCCcc
Confidence 2488999999999999987553
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-25 Score=182.32 Aligned_cols=163 Identities=33% Similarity=0.495 Sum_probs=142.3
Q ss_pred HHHHHHHHHHc--------CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 2 VRDVFRLAKEN--------APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 2 l~~if~~A~~~--------~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+|++|.-|.+- .--||++||+|++|.+|++... ..+....++++||..||+..+-++|+||+.||+.+-||
T Consensus 305 vR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlID 383 (744)
T KOG0741|consen 305 VRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLID 383 (744)
T ss_pred HHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCC-CCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHH
Confidence 68889888531 2369999999999999976543 23445699999999999999999999999999999999
Q ss_pred ccccCCCCccceecCCCCCHHHHHHHHHHHHccC----CCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----
Q 030674 74 PALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM----NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---- 145 (173)
Q Consensus 74 ~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~----~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---- 145 (173)
.||+|||||...+++..||...|.+|++.+..+. .+++++|+.++|..|..|||++|+-+++.|...|..+.
T Consensus 384 EALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 384 EALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred HHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999998877653 45688999999999999999999999999988887663
Q ss_pred -----------CCccCHHHHHHHHHhhCCCC
Q 030674 146 -----------RYVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 146 -----------~~~i~~~d~~~al~~~~p~~ 165 (173)
.-.++.+||.+||++++|..
T Consensus 464 ~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 464 GKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred cceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 12599999999999999985
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=1.6e-23 Score=183.49 Aligned_cols=163 Identities=40% Similarity=0.625 Sum_probs=143.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|....|+||+|||+|.+++++..... ....++.+.|++.++++....+++||++||.++.+|+++++|||
T Consensus 260 l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~---~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gR 336 (733)
T TIGR01243 260 LREIFKEAEENAPSIIFIDEIDAIAPKREEVTG---EVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGR 336 (733)
T ss_pred HHHHHHHHHhcCCcEEEeehhhhhcccccCCcc---hHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchh
Confidence 678999999999999999999999987743322 22357888999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
|+..++++.|+.++|.+||+.+.+...+..+.++..++..|.||+++||..++..|+..+.++.
T Consensus 337 fd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~ 416 (733)
T TIGR01243 337 FDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAE 416 (733)
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccch
Confidence 9999999999999999999999988887778899999999999999999999999998887652
Q ss_pred ---CCccCHHHHHHHHHhhCCCCCc
Q 030674 146 ---RYVILPKDFEKGYRTNVKKPDT 167 (173)
Q Consensus 146 ---~~~i~~~d~~~al~~~~p~~~~ 167 (173)
...++.+||..|++.+.|+...
T Consensus 417 ~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 417 VLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred hcccccccHHHHHHHHhhccccccc
Confidence 1247889999999999998643
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=3.1e-22 Score=159.93 Aligned_cols=138 Identities=21% Similarity=0.205 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHc-----CCeEEEEcccccccccccCCCCCCchHHHHH-HHHHHHhccCC------------CCCCCeEE
Q 030674 1 MVRDVFRLAKEN-----APAIIFIDEVDAIATARFDAQTGADREVQRI-LMELLNQMDGF------------DQTVNVKV 62 (173)
Q Consensus 1 ~l~~if~~A~~~-----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~------------~~~~~v~v 62 (173)
.||++|..|+.. +||||||||||++++.+++.+ .....++ ..+|++.+|+. ....+|+|
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~---~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ---YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC---cchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 379999999864 699999999999999885322 1222344 47899988863 23567999
Q ss_pred EEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCC----CCHHHHHHHHHHHH
Q 030674 63 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDK----ISAAEIAAICQEAG 138 (173)
Q Consensus 63 i~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g----~s~~di~~l~~~a~ 138 (173)
|+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..+. ..++..++..++| |.++--..+.+++.
T Consensus 272 IaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v 348 (413)
T PLN00020 272 IVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEV 348 (413)
T ss_pred EEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHH
Confidence 999999999999999999999975 5899999999999999987665 4688899999887 77877777888776
Q ss_pred HHHHHh
Q 030674 139 MHAVRK 144 (173)
Q Consensus 139 ~~a~~~ 144 (173)
..-+.+
T Consensus 349 ~~~i~~ 354 (413)
T PLN00020 349 RKWIAE 354 (413)
T ss_pred HHHHHH
Confidence 555444
No 38
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.3e-20 Score=157.75 Aligned_cols=170 Identities=22% Similarity=0.312 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-C-CCCCCeEEEEEeCCCCCCCccccC
Q 030674 1 MVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-F-DQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 1 ~l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
+|+.+|..|-+++|+||++||+|.+++.. +.+.+.+......+..+++++-. + +.++.+.+|||.+....+++-|..
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s-~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASAS-SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccC-cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 37889999999999999999999999833 34455555556666777765432 2 556678999999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh----cCCccCHHH
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK----NRYVILPKD 153 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~----~~~~i~~~d 153 (173)
|++|+.++.+|+|+..+|.+||+..+.+.... ..-|++.++..|+||...|++-++.+|.+.+... +.+.++.++
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~ 640 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKEL 640 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHH
Confidence 99999999999999999999999998876533 3345666999999999999999999999998833 234899999
Q ss_pred HHHHHHhhCCCCCccccc
Q 030674 154 FEKGYRTNVKKPDTDFEF 171 (173)
Q Consensus 154 ~~~al~~~~p~~~~~~~~ 171 (173)
|..+++.+.|...++..+
T Consensus 641 f~ksL~~F~P~aLR~ik~ 658 (952)
T KOG0735|consen 641 FEKSLKDFVPLALRGIKL 658 (952)
T ss_pred HHHHHHhcChHHhhhccc
Confidence 999999999998766554
No 39
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1e-18 Score=140.58 Aligned_cols=155 Identities=25% Similarity=0.370 Sum_probs=125.0
Q ss_pred HHHHHHHHHHcCC-eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAP-AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P-~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
|+++|++|+.... -+|||||+|+++..|. ....++..+..++.||-.-. .++..++++.+||.|.++|.++..
T Consensus 431 iH~lFDWakkS~rGLllFIDEADAFLceRn--ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D-- 504 (630)
T KOG0742|consen 431 IHKLFDWAKKSRRGLLLFIDEADAFLCERN--KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND-- 504 (630)
T ss_pred HHHHHHHHhhcccceEEEehhhHHHHHHhc--hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--
Confidence 7899999987665 5888999999998883 34455556677888887665 566689999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCC---------------------------cCCHHHHhcCCCCCCHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSD---------------------------EVDLEDYVSRPDKISAAEIAAI 133 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~---------------------------~~~~~~la~~t~g~s~~di~~l 133 (173)
|||.+|+||.|..++|..++..|+.++...+ +--+++.|..|+||||++|..+
T Consensus 505 Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakL 584 (630)
T KOG0742|consen 505 RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKL 584 (630)
T ss_pred hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHH
Confidence 9999999999999999999999997653211 0125678999999999999999
Q ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 134 CQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 134 ~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+......+.-+..-+++..-|.+.+....
T Consensus 585 va~vQAavYgsedcvLd~~lf~e~v~ykv 613 (630)
T KOG0742|consen 585 VASVQAAVYGSEDCVLDEALFDERVDYKV 613 (630)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 98877666666666777777777766544
No 40
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.9e-17 Score=140.10 Aligned_cols=158 Identities=19% Similarity=0.367 Sum_probs=128.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-CCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+..+|++|+.++|+|||+-++|.+...+.. +.+-+..+.+..++. ++.. ....+++||+||++.+.||+.+++
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~-- 552 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS-- 552 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--
Confidence 568999999999999999999999955422 333333344444433 2222 366789999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh---cC-----------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK---NR----------- 146 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~---~~----------- 146 (173)
.|-++|.++.|+.+||.++|++|+....++.++....+|.+|.|||.+|++.++......+..+ ..
T Consensus 553 ~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~ 632 (953)
T KOG0736|consen 553 LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEG 632 (953)
T ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcccc
Confidence 9999999999999999999999999999998899999999999999999999998873333222 11
Q ss_pred ------CccCHHHHHHHHHhhCCCC
Q 030674 147 ------YVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 147 ------~~i~~~d~~~al~~~~p~~ 165 (173)
..++++||..++.+.++..
T Consensus 633 ~~~~~~~~l~~edf~kals~~~~~f 657 (953)
T KOG0736|consen 633 ELCAAGFLLTEEDFDKALSRLQKEF 657 (953)
T ss_pred ccccccceecHHHHHHHHHHHHHhh
Confidence 4799999999999887664
No 41
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.9e-14 Score=120.36 Aligned_cols=159 Identities=36% Similarity=0.544 Sum_probs=141.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+|+++++|++|.+.+.+.. .......+++++++..++++... .+++++.||.+..+|+++++|||
T Consensus 65 ~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~-~v~~~~~~~~~~~~~~a~~~~~~ 140 (494)
T COG0464 65 LRELFEEAEKLAPSIIFIDEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRG-QVIVIGATNRPDGLDPAKRRPGR 140 (494)
T ss_pred HHHHHHHHHHhCCCeEeechhhhcccCccc---cccchhhHHHHHHHHhcccccCC-ceEEEeecCCccccChhHhCccc
Confidence 578899999999999999999999998855 33334468899999999998844 49999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc------CCccCHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------RYVILPKDFE 155 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------~~~i~~~d~~ 155 (173)
|+..++++.|+...|.+++.............++..++..+.||+++|+..++..+...+.++. ...++.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 220 (494)
T COG0464 141 FDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFE 220 (494)
T ss_pred cceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHH
Confidence 9999999999999999999998888777777899999999999999999999999988888774 3469999999
Q ss_pred HHHHhhCCC
Q 030674 156 KGYRTNVKK 164 (173)
Q Consensus 156 ~al~~~~p~ 164 (173)
++++.+.|+
T Consensus 221 ~~l~~~~~~ 229 (494)
T COG0464 221 EALKKVLPS 229 (494)
T ss_pred HHHHhcCcc
Confidence 999999886
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-15 Score=122.81 Aligned_cols=120 Identities=23% Similarity=0.315 Sum_probs=90.7
Q ss_pred CCeEEEEcccccccccccCCCC---CCc-hHHHHHHHHHHHhccCCCCCC--CeEEEEEeCCCCCCCccccCCCCcccee
Q 030674 13 APAIIFIDEVDAIATARFDAQT---GAD-REVQRILMELLNQMDGFDQTV--NVKVIMATNRADTLDPALLRPGRLDRKI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~---~~~-~~~~~~~~~ll~~l~~~~~~~--~v~vi~ttn~~~~ld~al~r~grf~~~i 86 (173)
..|||+|+|||+-+..+..... +.. ....-.++.||+.+|+++... -.++|.|||+++.|||||+||||.|.+|
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 3599999999998754322222 111 122356789999999998776 6899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCC--CCCHHHHHHHH
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPD--KISAAEIAAIC 134 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~--g~s~~di~~l~ 134 (173)
+++.++.++-+.++..|+.-.. +..-..++...-. -.||||+...+
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999999997643 1122334444333 36999998743
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.50 E-value=9.7e-14 Score=96.59 Aligned_cols=85 Identities=46% Similarity=0.747 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCC-CCeEEEEEeCCCCCCCccccCC
Q 030674 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT-VNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~-P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~vi~ttn~~~~ld~al~r~ 79 (173)
++.+|..|+..+ |+||+|||+|.++... ..........+++.++..++..... +++++|+|||.++.+|+++++
T Consensus 46 i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~- 121 (132)
T PF00004_consen 46 IRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR- 121 (132)
T ss_dssp HHHHHHHHHHTSTSEEEEEETGGGTSHHC---STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-
T ss_pred cccccccccccccceeeeeccchhccccc---ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-
Confidence 678999999988 9999999999999876 3334455568888999999987554 679999999999999999998
Q ss_pred CCccceecCCC
Q 030674 80 GRLDRKIEFPL 90 (173)
Q Consensus 80 grf~~~i~~~~ 90 (173)
+||+..+++|.
T Consensus 122 ~rf~~~i~~~~ 132 (132)
T PF00004_consen 122 SRFDRRIEFPL 132 (132)
T ss_dssp TTSEEEEEE-S
T ss_pred CCCcEEEEcCC
Confidence 89999999873
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.1e-13 Score=107.24 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=119.9
Q ss_pred HHHHHHHHHHcC-----CeEEEEcccccccccccC-CCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc
Q 030674 2 VRDVFRLAKENA-----PAIIFIDEVDAIATARFD-AQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 2 l~~if~~A~~~~-----P~il~ide~d~l~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (173)
+.++|++..+.. =..|+|||+|++...|.+ ...++....-|+++.++++||.++..++|++++|+|-.+.||.|
T Consensus 234 V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 234 VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHH
Confidence 566777776432 257889999999988843 33344445569999999999999999999999999999999999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC------------------CcCCHHHHhcC-CCCCCHHHHHHHHHH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS------------------DEVDLEDYVSR-PDKISAAEIAAICQE 136 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~------------------~~~~~~~la~~-t~g~s~~di~~l~~~ 136 (173)
+.. |-|.+.++++|+.+.|.+|++.++....-. .+.....+... +.|+||+-|..+-..
T Consensus 314 fVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~L 391 (423)
T KOG0744|consen 314 FVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLL 391 (423)
T ss_pred hhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHH
Confidence 999 999999999999999999999988643110 00112222222 589999999998876
Q ss_pred HHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 137 AGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 137 a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
|.....+. .+++..+|..|+-...
T Consensus 392 aha~y~~~--~~v~~~~fl~al~ea~ 415 (423)
T KOG0744|consen 392 AHAEYFRT--FTVDLSNFLLALLEAA 415 (423)
T ss_pred HHHhccCC--CccChHHHHHHHHHHH
Confidence 65444333 5799999998886543
No 45
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.14 E-value=4.8e-10 Score=98.66 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=104.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
++.+|+.++...|+||||||+|.+++.++.. +......+++..+ .....+.+|++|+.++ ..|++|
T Consensus 267 l~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~-------L~~g~i~vIgATt~~E~~~~~~~D~AL 337 (758)
T PRK11034 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPL-------LSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_pred HHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHH-------HhCCCeEEEecCChHHHHHHhhccHHH
Confidence 4678888888889999999999999765321 1112222222222 2356799999999865 579999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHH-----HhcC-----CCCCCHHHHHHHHHHHHHHHH----
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLED-----YVSR-----PDKISAAEIAAICQEAGMHAV---- 142 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~-----la~~-----t~g~s~~di~~l~~~a~~~a~---- 142 (173)
.| ||+ .|+++.|+.+++..|++.+...+....++.+.+ .+.. +..+.|.....++++|+....
T Consensus 338 ~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~ 414 (758)
T PRK11034 338 AR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_pred Hh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcc
Confidence 99 996 799999999999999998776654444443332 2222 345678888889998875432
Q ss_pred HhcCCccCHHHHHHHHHhhCC
Q 030674 143 RKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 143 ~~~~~~i~~~d~~~al~~~~p 163 (173)
...+..++.+|+.+.+.+...
T Consensus 415 ~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 415 SKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred cccccccChhhHHHHHHHHhC
Confidence 122346888999888877653
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.04 E-value=1.3e-09 Score=96.16 Aligned_cols=149 Identities=20% Similarity=0.264 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
++.+|+.+++..|+||||||+|.+++.+.... .+.....+ |...+ .+..+.+|++||..+ ..|+++
T Consensus 263 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~--~~~~~~~~---L~~~l----~~g~i~~IgaTt~~e~~~~~~~d~al 333 (731)
T TIGR02639 263 LKAVVSEIEKEPNAILFIDEIHTIVGAGATSG--GSMDASNL---LKPAL----SSGKLRCIGSTTYEEYKNHFEKDRAL 333 (731)
T ss_pred HHHHHHHHhccCCeEEEEecHHHHhccCCCCC--ccHHHHHH---HHHHH----hCCCeEEEEecCHHHHHHHhhhhHHH
Confidence 67899999888899999999999997652211 11111222 33333 245799999999633 589999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccC----CCC-CcCCHHHHhcCCCCCCH-----HHHHHHHHHHHHHHHHh--
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM----NLS-DEVDLEDYVSRPDKISA-----AEIAAICQEAGMHAVRK-- 144 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t~g~s~-----~di~~l~~~a~~~a~~~-- 144 (173)
.| ||+ .|+++.|+.+++.+|++.+...+ .+. .+-.+..++..+..|-+ .---.++++|.......
T Consensus 334 ~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~ 410 (731)
T TIGR02639 334 SR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPK 410 (731)
T ss_pred HH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcc
Confidence 99 997 69999999999999999766542 111 22345667777766643 33345556655432221
Q ss_pred --cCCccCHHHHHHHHHhhC
Q 030674 145 --NRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 145 --~~~~i~~~d~~~al~~~~ 162 (173)
.+..|+.+|+.+++....
T Consensus 411 ~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 411 AKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred cccccccCHHHHHHHHHHHh
Confidence 134699999999998875
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.03 E-value=5e-09 Score=82.87 Aligned_cols=122 Identities=19% Similarity=0.262 Sum_probs=83.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC------CCccccCCCCcccee
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT------LDPALLRPGRLDRKI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~------ld~al~r~grf~~~i 86 (173)
.++||||||+|.+...+.. ..........|+..|+. ...+++||++++ ++. ++|++.+ ||+..|
T Consensus 122 ~ggVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~--~~~~~~vI~ag~-~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMEN--QRDDLVVIFAGY-KDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred cCCEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCC-cHHHHHHHhcCHHHHH--hCCceE
Confidence 4689999999998753211 11123566777777874 345677777764 333 3589999 999999
Q ss_pred cCCCCCHHHHHHHHHHHHccCCC--CCcCC---HHHHhcC--CCCCC-HHHHHHHHHHHHHHHHHh
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNL--SDEVD---LEDYVSR--PDKIS-AAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~--~~~~~---~~~la~~--t~g~s-~~di~~l~~~a~~~a~~~ 144 (173)
+|++++.+++.+|++.++.+... +++.. ...+... .+.|. ++++.++++++...-..+
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r 257 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANR 257 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986543 22211 1112222 35676 899999999986555444
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=1.4e-08 Score=81.72 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=84.2
Q ss_pred CeEEEEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
++.+|++||.+..+++.+++ ||+..+.|++|+.+++.++++......... ++-.+..++..+.|. |+.+..++..+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 47889999999999999998 999999999999999999999887765444 223477899988884 58888888888
Q ss_pred HHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 138 GMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 138 ~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
...+...+...++.+++..++.....
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 77777666668999999999977543
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.91 E-value=3.3e-08 Score=80.33 Aligned_cols=146 Identities=23% Similarity=0.241 Sum_probs=98.0
Q ss_pred HHHHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-CCCCCeEEEEEeCCCC---CCCcccc
Q 030674 3 RDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRAD---TLDPALL 77 (173)
Q Consensus 3 ~~if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~---~ld~al~ 77 (173)
+.+++.... ..|.||+|||+|.+.... ..++..++...+.. ....++.+|+++|.++ .+++.+.
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~ 186 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVK 186 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHh
Confidence 344554433 347899999999997211 02344454442111 2335799999999886 5788887
Q ss_pred CCCCcc-ceecCCCCCHHHHHHHHHHHHccC----CCCCcC--CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccC
Q 030674 78 RPGRLD-RKIEFPLPDRRQKRLVFQVCTAKM----NLSDEV--DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVIL 150 (173)
Q Consensus 78 r~grf~-~~i~~~~p~~~~R~~il~~~l~~~----~~~~~~--~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~ 150 (173)
+ ||. ..++|++++.++..++++..+... ..+++. -+..++..+.|. ++..-.+|..|...|..++...|+
T Consensus 187 s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~~~~it 263 (365)
T TIGR02928 187 S--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREGAERVT 263 (365)
T ss_pred c--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 7 775 679999999999999999887521 112211 123344444553 455566788888888888888899
Q ss_pred HHHHHHHHHhhC
Q 030674 151 PKDFEKGYRTNV 162 (173)
Q Consensus 151 ~~d~~~al~~~~ 162 (173)
.+++..|+....
T Consensus 264 ~~~v~~a~~~~~ 275 (365)
T TIGR02928 264 EDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=1.7e-08 Score=80.27 Aligned_cols=100 Identities=12% Similarity=0.072 Sum_probs=81.3
Q ss_pred CeEEEEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
++.+|++||.+..+++++++ ||...+.+++|+.+++.++++......... ++-.+..++..+.|+. +.+..++..+
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 58899999999999999999 999999999999999999999887654433 2234678999988854 7778888877
Q ss_pred HHHHHHhcCCccCHHHHHHHHHhh
Q 030674 138 GMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 138 ~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
...+...+...++.+.+..++..+
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHh
Confidence 666656666679999999998874
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.91 E-value=1.5e-08 Score=80.07 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=87.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC--C---CCCcccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA--D---TLDPALL 77 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~--~---~ld~al~ 77 (173)
+.+|+.| .+++|||||++.+.+.+.. ..........|+..|+. ...++.+|++++.. + .++|++.
T Consensus 114 ~~~~~~a---~~gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~ 183 (284)
T TIGR02880 114 KEILKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFS 183 (284)
T ss_pred HHHHHHc---cCcEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHH
Confidence 3455554 4689999999998743311 11223566677888873 34567777776532 2 2479999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcC------CCCCC-HHHHHHHHHHHHHHHHHh
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSR------PDKIS-AAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~------t~g~s-~~di~~l~~~a~~~a~~~ 144 (173)
+ ||...|+||+++.+++..|++.++.+.... +.-.+..+... -+.+. .+++.+++..+......+
T Consensus 184 s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r 256 (284)
T TIGR02880 184 S--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANR 256 (284)
T ss_pred h--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999875433 11112222222 13444 899999999986655544
No 52
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.88 E-value=1.1e-08 Score=90.92 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CC--------CCCCeEEEEEeCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD--------QTVNVKVIMATNRA 69 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~--------~~~~v~vi~ttn~~ 69 (173)
...|..|....| ||+|||+|.+.+.. .+. ..+.|+..+|. +. ..+++++|+|||.+
T Consensus 405 ~~~l~~~~~~~~-villDEidk~~~~~----~~~------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~ 473 (775)
T TIGR00763 405 IQGLKKAKTKNP-LFLLDEIDKIGSSF----RGD------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI 473 (775)
T ss_pred HHHHHHhCcCCC-EEEEechhhcCCcc----CCC------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc
Confidence 456777766656 78999999998532 111 12345555542 11 12579999999999
Q ss_pred CCCCccccCCCCccceecCCCCCHHHHHHHHHHHHc-----cCCCC------CcCCHHHHhc-CCCCCCHHHHHHHHHHH
Q 030674 70 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTA-----KMNLS------DEVDLEDYVS-RPDKISAAEIAAICQEA 137 (173)
Q Consensus 70 ~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~-----~~~~~------~~~~~~~la~-~t~g~s~~di~~l~~~a 137 (173)
+.+|+++++ ||+ +|+|+.|+.+++.+|++.++. ...+. ++-.+..+++ .|..+..++|++.+...
T Consensus 474 ~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~ 550 (775)
T TIGR00763 474 DTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKI 550 (775)
T ss_pred hhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHH
Confidence 999999999 995 789999999999999988762 22221 1112444444 45556667776655554
Q ss_pred HHHHHHh----cC--------CccCHHHHHHHH
Q 030674 138 GMHAVRK----NR--------YVILPKDFEKGY 158 (173)
Q Consensus 138 ~~~a~~~----~~--------~~i~~~d~~~al 158 (173)
+..+... +. ..++.+++..-+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~l 583 (775)
T TIGR00763 551 CRKAAVKLVEQGEKKKSEAESVVITPDNLKKYL 583 (775)
T ss_pred HHHHHHHHHhccCcccCCcccccCCHHHHHHhc
Confidence 4333322 21 357777765554
No 53
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.88 E-value=1.7e-08 Score=86.21 Aligned_cols=97 Identities=22% Similarity=0.180 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHH
Q 030674 60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAG 138 (173)
Q Consensus 60 v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~ 138 (173)
.++.+||++|+.+++++++ |+. .+.|++++.+++.++++..+++.... ++-.++.++..+. +++++.++++.|+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 5667778889999999999 884 68899999999999999999876544 2223556666554 7899999999999
Q ss_pred HHHHHhcCCccCHHHHHHHHHhh
Q 030674 139 MHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 139 ~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
..+..+++..|+.+|+.+++..-
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhCCc
Confidence 88888887889999999999743
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.87 E-value=5.3e-08 Score=75.97 Aligned_cols=129 Identities=18% Similarity=0.180 Sum_probs=83.5
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC-----CCCCcccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-----DTLDPALL 77 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-----~~ld~al~ 77 (173)
+.+|+.| .++||||||+|.+.... ........+..++..++.. ..++++|+++... ..++|++.
T Consensus 98 ~~~~~~a---~~~VL~IDE~~~L~~~~------~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 98 REVIKKA---LGGVLFIDEAYSLARGG------EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred HHHHHhc---cCCEEEEechhhhccCC------ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHH
Confidence 4556555 36899999999986311 1111235567788888743 3455555554322 23678999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhc---------CCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVS---------RPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~---------~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
+ ||+..++||.++.+++.+|++.++...... ++-.+..++. ....-.++.+.+++..|......+
T Consensus 167 s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 167 S--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred h--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999865433 1111222321 112235788888888886655544
No 55
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.83 E-value=1e-07 Score=78.28 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=96.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc-ceecC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD-RKIEF 88 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~-~~i~~ 88 (173)
.|.||+|||+|.+.... + ...+..++..++.... .++.+|+++|.++ .+++.+.+ ||. ..|+|
T Consensus 138 ~~~viviDE~d~l~~~~-----~-----~~~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f 204 (394)
T PRK00411 138 RVLIVALDDINYLFEKE-----G-----NDVLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYF 204 (394)
T ss_pred CEEEEEECCHhHhhccC-----C-----chHHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeec
Confidence 46899999999987211 0 1345666666655433 3788999988764 46666666 664 57899
Q ss_pred CCCCHHHHHHHHHHHHccCC---CCCcCCHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 89 PLPDRRQKRLVFQVCTAKMN---LSDEVDLEDYVSRPDKI--SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~---~~~~~~~~~la~~t~g~--s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
++++.++..++++..+.... .-++-.+..+++.+.+. ..+..-.++..|...|..++...|+.+|+..|+....+
T Consensus 205 ~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 205 PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 99999999999998775321 11222345566666332 34555577888888888888888999999999988744
No 56
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.82 E-value=3.3e-08 Score=81.76 Aligned_cols=135 Identities=13% Similarity=0.182 Sum_probs=92.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC---CCccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (173)
.+.+|+|||+|.+.++. .... .|+..++.+...++.+||+++..|.. +++.+++ ||. ..++
T Consensus 199 ~~dlLiiDDi~~l~~~~---------~~~~---~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~ 264 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKE---------RTQE---EFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVD 264 (405)
T ss_pred hCCEEEEehhhhhcCCH---------HHHH---HHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEE
Confidence 36799999999886432 1112 23333332222334556666655665 5578888 986 4799
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+++|+.++|..|++..+...... ++-.+..+|....| +.++|+.++.+....+...+ .+++.+.+.+++.....
T Consensus 265 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 265 IEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 99999999999999998766554 33346677876654 78999999888766665443 56888888888887643
No 57
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.76 E-value=4.3e-08 Score=82.17 Aligned_cols=134 Identities=12% Similarity=0.168 Sum_probs=93.9
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC---CCccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (173)
.+.+|+|||+|.+.+++. ... .|+..++.+...++.++|+++..|.. +++.+++ ||. ..++
T Consensus 211 ~~dlLiiDDi~~l~~~~~---------~~~---~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~ 276 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER---------TQE---EFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVD 276 (450)
T ss_pred cCCEEEEehhhhhcCCHH---------HHH---HHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEE
Confidence 578999999998864321 112 23333333222334556666656655 6688888 996 5899
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+++|+.++|..|++..+...... ++-.++.+|..+.| +.++|..++......+...+ .+++.+.+.++++...
T Consensus 277 i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 277 IEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 99999999999999988765443 33346778887765 88999998888766665544 4699999999998764
No 58
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.75 E-value=8.6e-08 Score=85.83 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=93.3
Q ss_pred HHHHHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
|+.+|+.++. ..++||||||++.+.+.++.... .+ .. +.|...+ .++.+.+|++|+..+ .+|++
T Consensus 268 lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d--~~---n~Lkp~l----~~G~l~~IgaTT~~e~~~~~~~d~A 337 (852)
T TIGR03345 268 LKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD--AA---NLLKPAL----ARGELRTIAATTWAEYKKYFEKDPA 337 (852)
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc--HH---HHhhHHh----hCCCeEEEEecCHHHHhhhhhccHH
Confidence 5778988865 46899999999999976532211 11 11 2222222 355789999998654 48999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCC----CC-CcCCHHHHhcCCCCC-----CHHHHHHHHHHHHHHHH-Hh
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LS-DEVDLEDYVSRPDKI-----SAAEIAAICQEAGMHAV-RK 144 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t~g~-----s~~di~~l~~~a~~~a~-~~ 144 (173)
|.| ||. .|.++.|+.+++..||+.+...+. +. .+..+..++..+.+| -|.---.++++|+.... ..
T Consensus 338 L~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~ 414 (852)
T TIGR03345 338 LTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQ 414 (852)
T ss_pred HHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhc
Confidence 999 996 799999999999999877665432 11 233466677777765 34444556676654333 33
Q ss_pred cCCccCHHHHHHHH
Q 030674 145 NRYVILPKDFEKGY 158 (173)
Q Consensus 145 ~~~~i~~~d~~~al 158 (173)
...+...+++.+.+
T Consensus 415 ~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 415 NATPAALEDLRRRI 428 (852)
T ss_pred cCCchhHHHHHHHH
Confidence 34455545554443
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.60 E-value=2.7e-07 Score=77.13 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=90.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---CccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~--~~i~ 87 (173)
.|.+|+|||++.+.+..+ .+. .|...++.+...++.++|++.+.|..+ .+.+++ ||. ..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~---------~q~---elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~ 259 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTG---------VQT---ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_pred cCCEEEEechhhhcCcHH---------HHH---HHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEe
Confidence 588999999998864320 111 222223322233345566555667664 466777 774 6788
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+++|+.+.|..|++..+....+. ++-.+..+|....| +.++|+.++.+-...+...+ .+++.+...++++.+.
T Consensus 260 i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 260 LEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 99999999999999988754443 33346778887765 88899998887765555444 4788888888888764
No 60
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.59 E-value=5.4e-07 Score=79.88 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=92.5
Q ss_pred HHHHHHHHH--HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC---CCCCCccc
Q 030674 2 VRDVFRLAK--ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR---ADTLDPAL 76 (173)
Q Consensus 2 l~~if~~A~--~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~---~~~ld~al 76 (173)
+..+|.... ...+.||+|||+|.|.... ..++-.|..+.. ....++.+|+++|. ++.+++.+
T Consensus 856 LerLF~~L~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRL 922 (1164)
T PTZ00112 856 LDRLFNQNKKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRC 922 (1164)
T ss_pred HHHHHhhhhcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhh
Confidence 445666542 2235799999999997421 234444555433 23457999999987 66778888
Q ss_pred cCCCCccc-eecCCCCCHHHHHHHHHHHHccCC-CCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 030674 77 LRPGRLDR-KIEFPLPDRRQKRLVFQVCTAKMN-LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 154 (173)
Q Consensus 77 ~r~grf~~-~i~~~~p~~~~R~~il~~~l~~~~-~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 154 (173)
+. ||.. .|.|++++.++...|++.-+.... .-++-.+..+|+... ...||+...+.-....+-..+...|+.+++
T Consensus 923 RS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILRrAgEikegskVT~eHV 999 (1164)
T PTZ00112 923 RS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICRKAFENKRGQKIVPRDI 999 (1164)
T ss_pred hh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhhcCCCccCHHHH
Confidence 87 7764 488999999999999998877531 112222444555333 334677765543222221223347899999
Q ss_pred HHHHHhhC
Q 030674 155 EKGYRTNV 162 (173)
Q Consensus 155 ~~al~~~~ 162 (173)
..|+..+-
T Consensus 1000 rkAleeiE 1007 (1164)
T PTZ00112 1000 TEATNQLF 1007 (1164)
T ss_pred HHHHHHHH
Confidence 99987653
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=9.2e-07 Score=72.24 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=89.7
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.++..++. +..++.+|.+|++++.+++.+++ |+ ..++|++|+.+
T Consensus 121 kviIIDEa~~l~~--------------~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~ 181 (363)
T PRK14961 121 KVYLIDEVHMLSR--------------HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEE 181 (363)
T ss_pred eEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHH
Confidence 5999999997742 234567777774 44467777778889999999988 87 57899999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
+...+++..+...+.. ++..+..++..+.| +++++.++++.+... +...++.+++.+++.
T Consensus 182 el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 182 KIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 9999999887765433 22346667887776 788888888776533 345688888877664
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=7e-07 Score=68.43 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCC-CeEEEEEeCCCCCCC---ccccCCCCccceecC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTV-NVKVIMATNRADTLD---PALLRPGRLDRKIEF 88 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~ld---~al~r~grf~~~i~~ 88 (173)
++.+|+|||++.+.+.+ .....+-.+++.+ ..++ .+++++++..|..++ +.+.+..+++..+.+
T Consensus 91 ~~dlLilDDi~~~~~~~---------~~~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l 158 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE---------EWELAIFDLFNRI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQL 158 (229)
T ss_pred cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeC
Confidence 35799999999886432 1112333344433 2333 345556666688776 788883445689999
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
++|+.++|.++++.......+. ++-.+..++...+| +.+.+..++..-...+. ..++++|...+.+.+
T Consensus 159 ~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~-~~~~~it~~~v~~~L 227 (229)
T PRK06893 159 NDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASL-QAQRKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHh
Confidence 9999999999999877655443 33345667776664 77788887776543333 333478888887765
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.51 E-value=1.3e-06 Score=70.76 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHHHHHHHHHcC----CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKENA----PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~~----P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+++.+.... .-||+|||+|.+.. ...+.++..++. +...+++|++|++++.+.++++
T Consensus 102 ~~~l~~~~~~~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~ 165 (355)
T TIGR02397 102 IREILDNVKYAPSSGKYKVYIIDEVHMLSK--------------SAFNALLKTLEE--PPEHVVFILATTEPHKIPATIL 165 (355)
T ss_pred HHHHHHHHhcCcccCCceEEEEeChhhcCH--------------HHHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHH
Confidence 456777765431 25999999997742 235667777764 3446777788899999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..+++++|+.++...+++..+...... ++-.+..++..+.| +++.+.+.++.+.... ...++.+++.+
T Consensus 166 s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~ 237 (355)
T TIGR02397 166 S--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NGNITYEDVNE 237 (355)
T ss_pred h--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHH
Confidence 8 87 478999999999999999888766543 22345667776665 7777777776655432 23477777765
Q ss_pred HH
Q 030674 157 GY 158 (173)
Q Consensus 157 al 158 (173)
.+
T Consensus 238 ~~ 239 (355)
T TIGR02397 238 LL 239 (355)
T ss_pred Hh
Confidence 54
No 64
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.1e-06 Score=72.82 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=100.1
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+.+.|... ..-|++|||+|.+.. ...+.|+..++ .+...+++|.+|+.++.+++.++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLLk~LE--epp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALLKTLE--EPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH--------------HHHHHHHHHHh--hcCCCEEEEEEeCChHHhhHHHH
Confidence 46667666533 235999999997742 34567777777 34557777777888999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..++|..++.++...+++..+...+.. ++-.+..++..+.| +.+++.++++.+...+... ...|+.+++.+
T Consensus 177 S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~ 251 (507)
T PRK06645 177 S--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQ 251 (507)
T ss_pred h--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHH
Confidence 8 77 568999999999999999988765544 22346778888777 8999999999886554322 22578888776
Q ss_pred HHH
Q 030674 157 GYR 159 (173)
Q Consensus 157 al~ 159 (173)
.+.
T Consensus 252 llg 254 (507)
T PRK06645 252 MLG 254 (507)
T ss_pred HHC
Confidence 653
No 65
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=2.5e-06 Score=65.59 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=83.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---CccccCCCCc--cceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRL--DRKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf--~~~i~ 87 (173)
+..+|+|||+|.+.... . ....+-.+++.. ...+.-+++.+...|..+ ++.+++ || ..++.
T Consensus 93 ~~dlLiIDDi~~l~~~~--------~-~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 93 GRSLVALDGLESIAGQR--------E-DEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG 158 (233)
T ss_pred cCCEEEEeCcccccCCh--------H-HHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE
Confidence 45699999999876432 1 112222344444 222233444444467766 688988 87 56789
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+++|+.++|..+++.......+. ++-.+..++..++| +.+.+.++++.....+...+ +.+|...+.+.+...
T Consensus 159 l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~~ 231 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEEG 231 (233)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhhc
Confidence 99999999999999865543333 33346678887663 44444444665443344433 479999988887654
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.8e-06 Score=71.31 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=89.9
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
...|++|||+|.+.. ...+.|+..++. +..++++|.+|+.++.|++.+++ |+. .+.|..++
T Consensus 121 ~~KV~IIDEah~Ls~--------------~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls 181 (484)
T PRK14956 121 KYKVYIIDEVHMLTD--------------QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVP 181 (484)
T ss_pred CCEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCC
Confidence 356999999998852 356778888873 55688888899999999999999 874 58899999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
.++-.+.++..+....+. ++-.+..+|..+.| +++|..++++.+...+ ...++.+++...+
T Consensus 182 ~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 182 LSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 988888888887765443 33346778887776 5778878877765331 2246766665544
No 67
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.44 E-value=5.2e-07 Score=81.01 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=68.0
Q ss_pred HHHHHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
++.+|+.+.. ..|+||||||++.+.+.+++. +. .....++. ..-.++.+.+|++|+..+ .+|++
T Consensus 259 lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~-~d~~~~lk-------p~l~~g~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 259 LKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GA-MDAGNMLK-------PALARGELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred HHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cc-hhHHHHhc-------chhhcCCCeEEEcCCCHHHHHHhhhcHH
Confidence 5678887543 568999999999998765321 11 11122222 222456899999999877 48999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccC
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM 107 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~ 107 (173)
+.| ||+ .|.++.|+.+++..+++.+..++
T Consensus 329 l~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 329 LER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred HHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 999 998 58899999999999999877654
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.43 E-value=4.9e-07 Score=81.26 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=75.1
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
++.+|+.+... .|+||||||++.+++.++.. +. . .. ..++. .......+.+|++|+..+ .+|++
T Consensus 254 l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~--~~-~---d~-~~~Lk---~~l~~g~i~~IgaTt~~e~r~~~~~d~a 323 (852)
T TIGR03346 254 LKAVLNEVTKSEGQIILFIDELHTLVGAGKAE--GA-M---DA-GNMLK---PALARGELHCIGATTLDEYRKYIEKDAA 323 (852)
T ss_pred HHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc--ch-h---HH-HHHhc---hhhhcCceEEEEeCcHHHHHHHhhcCHH
Confidence 56778887654 58999999999998654221 11 1 11 12222 223455799999999874 48999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCc-----CCHHHHhcCCCCC
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDE-----VDLEDYVSRPDKI 125 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~-----~~~~~la~~t~g~ 125 (173)
+.| ||. .|.++.|+.+++..|++.+..++..... ..+...+..+.+|
T Consensus 324 l~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 324 LER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred HHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 999 996 5899999999999999988666543322 2344455555544
No 69
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.42 E-value=2e-06 Score=72.20 Aligned_cols=134 Identities=11% Similarity=0.208 Sum_probs=91.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCC---CCccccCCCCcc--cee
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADT---LDPALLRPGRLD--RKI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~---ld~al~r~grf~--~~i 86 (173)
.+-+|+|||++.+.++. .....+-.+++.+. ..++. +|.|++. |.. +++.|++ ||. ..+
T Consensus 206 ~~dvLiIDDiq~l~~k~---------~~~e~lf~l~N~~~---~~~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE---------KTNEIFFTIFNNFI---ENDKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred cCCEEEEeccccccCCH---------HHHHHHHHHHHHHH---HcCCc-EEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 46799999999875432 11233334444442 23333 4455443 444 4678888 884 778
Q ss_pred cCCCCCHHHHHHHHHHHHccCCC--C-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc-CCccCHHHHHHHHHhhC
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNL--S-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-RYVILPKDFEKGYRTNV 162 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~--~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-~~~i~~~d~~~al~~~~ 162 (173)
.+.+|+.++|.++++..+....+ . ++-.+..++..+.| +++.+..++.+....+.... ..+++.+.+.+++++..
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 89999999999999998876443 1 22245667777776 89999999998876665542 35799999999998764
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=2.9e-06 Score=71.51 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=92.9
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ...||+|||+|.+.. ...+.|+..++. ....+++|++|+++..++++++
T Consensus 102 iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~ 165 (472)
T PRK14962 102 IRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EAFNALLKTLEE--PPSHVVFVLATTNLEKVPPTII 165 (472)
T ss_pred HHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HHHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHh
Confidence 45555555432 246999999998742 234567777774 3446777777788999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .+.|.+|+.++...+++..+...... ++-.+..++..+.| ..+++.+.+..+... .+ ..|+.+++..
T Consensus 166 S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~---~~-~~It~e~V~~ 237 (472)
T PRK14962 166 S--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKF---SE-GKITLETVHE 237 (472)
T ss_pred c--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh---cC-CCCCHHHHHH
Confidence 9 874 79999999999999998887654433 22346778876654 566666666554322 12 2488888887
Q ss_pred HHHhh
Q 030674 157 GYRTN 161 (173)
Q Consensus 157 al~~~ 161 (173)
++...
T Consensus 238 ~l~~~ 242 (472)
T PRK14962 238 ALGLI 242 (472)
T ss_pred HHcCC
Confidence 77543
No 71
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.39 E-value=1.8e-06 Score=65.54 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=83.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC---ccccCCCCc--cceecC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRL--DRKIEF 88 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf--~~~i~~ 88 (173)
+.+|+|||+|.+.... .....+..+++.+. .....+|+.++..+..++ +.+.+ |+ ...+.+
T Consensus 91 ~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP---------EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred CCEEEEeChhhhcCCh---------HHHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 4699999999875321 00123333443332 222344444444454443 56776 65 478999
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
|+|+.+++..+++.+....... +.-.+..++.. -+-+++++.++++++...+.+.+ ..|+.+.+.+.+
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 9999999999999887654443 22346667774 55699999999998776555544 578888887665
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.8e-06 Score=71.64 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCC-----eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 2 VRDVFRLAKENAP-----AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P-----~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
+|.+.+.+. +.| -|++|||+|.+.. ...+.|+..++. ....+.+|.+|+++..+.+.+
T Consensus 109 iReli~~~~-~~p~~g~~KV~IIDEvh~Ls~--------------~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 109 VQQLLEQAV-YKPVQGRFKVFMIDEVHMLTN--------------TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred HHHHHHHHH-hCcccCCceEEEEEChhhCCH--------------HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHH
Confidence 345555543 334 4999999998753 336678888874 455777788888899999999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 155 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 155 (173)
++ |+ ..++|..++.++....++..+...++. +.-.+..++..+.| +.+++.++++.+... +...|+.+++.
T Consensus 172 lS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~ 243 (618)
T PRK14951 172 LS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF----GSGQLQEAAVR 243 (618)
T ss_pred HH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 88 76 679999999999999998887665544 22346778887776 888888888766543 23357766666
Q ss_pred HHH
Q 030674 156 KGY 158 (173)
Q Consensus 156 ~al 158 (173)
..+
T Consensus 244 ~~L 246 (618)
T PRK14951 244 QML 246 (618)
T ss_pred HHH
Confidence 554
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.1e-06 Score=70.86 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=77.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+++.+... ...|++|||+|.+.. ...+.|++.|+. +..++++|.+|++++.+++.++
T Consensus 102 iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEe--p~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 102 VRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred HHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhc--CCCCCeEEEEECChHHChHHHH
Confidence 57788877542 135999999998853 234668888874 4445666666677999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAI 133 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l 133 (173)
+ |+ ..++|++|+.++....+..- ....+ .....++..+.|..+..+..+
T Consensus 166 S--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~~-~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 166 S--RC-RHVALRTPSVEAVAEVLVRR---DGVDP-ETARRAARASQGHIGRARRLA 214 (394)
T ss_pred h--hC-eEEECCCCCHHHHHHHHHHh---cCCCH-HHHHHHHHHcCCCHHHHHHHh
Confidence 9 87 58999999999877777632 12332 235678888888777655443
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.7e-06 Score=71.51 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.|+..|+. +..++.+|.+|+++..+++.+++ |+ ..++|.+++.+
T Consensus 121 kV~iIDE~~~ls~--------------~a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~ 181 (509)
T PRK14958 121 KVYLIDEVHMLSG--------------HSFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPL 181 (509)
T ss_pred EEEEEEChHhcCH--------------HHHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHH
Confidence 5999999998752 345678888884 44567777788899999999988 77 56889999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
+-...++..+...+.. .+..+..++..+.| +.+++.++++.+... +...|+.+++...+..
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 8888888887765544 22346678877765 899999999877532 2345888888766543
No 75
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=3.8e-06 Score=72.38 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CC---CCCccccCCCCc--cce
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-AD---TLDPALLRPGRL--DRK 85 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~---~ld~al~r~grf--~~~ 85 (173)
.++.+|+|||++.+.++. .....+-.+++.+. ..++-+| .|++. |. .+++.|++ || ...
T Consensus 376 ~~~DLLlIDDIq~l~gke---------~tqeeLF~l~N~l~---e~gk~II-ITSd~~P~eL~~l~~rL~S--Rf~~GLv 440 (617)
T PRK14086 376 REMDILLVDDIQFLEDKE---------STQEEFFHTFNTLH---NANKQIV-LSSDRPPKQLVTLEDRLRN--RFEWGLI 440 (617)
T ss_pred hcCCEEEEehhccccCCH---------HHHHHHHHHHHHHH---hcCCCEE-EecCCChHhhhhccHHHHh--hhhcCce
Confidence 347899999999886433 11122223444432 3333344 45554 43 56788998 88 567
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 86 IEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 86 i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+++..|+.+.|.+||+..+....+. ++-.+..|+....+ +.++|+.++.+-...+...+ ..++.+...+.++.+.+
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 7999999999999999988776655 33335567776553 78899998887665554444 46888888888887755
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=4.6e-06 Score=73.22 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=87.4
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+.+.+... ..-|++|||+|.|.. ...+.|++.|+ ....++.+|.+||+++.|.+.|+
T Consensus 104 IReLIe~a~~~P~~gr~KVIIIDEah~LT~--------------~A~NALLKtLE--EPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 104 MAALLERAVYAPVDARFKVYMIDEVHMLTN--------------HAFNAMLKTLE--EPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred HHHHHHHHHhccccCCceEEEEeChhhCCH--------------HHHHHHHHHHH--hcCCCeEEEEEECChhhccchhh
Confidence 34555555321 246999999998752 34567888887 34558889999999999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
+ |+ ..+.|..++.++-.+.|+..+....+. ++-.+..|++.+.| +.++..+++..+..
T Consensus 168 S--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 168 S--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred h--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8 88 679999999999999999888765443 33346778888877 45777777776653
No 77
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=1.2e-05 Score=62.57 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=91.8
Q ss_pred HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC---CC----ccccCCCCc
Q 030674 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LD----PALLRPGRL 82 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld----~al~r~grf 82 (173)
....+.+|+|||++.+.. .....+..+.+.. ..+...+.|+.+..++. +. ..+.+ |+
T Consensus 120 ~~~~~~vliiDe~~~l~~-----------~~~~~l~~l~~~~---~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~ 183 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTP-----------ELLEELRMLSNFQ---TDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RI 183 (269)
T ss_pred hCCCCeEEEEECcccCCH-----------HHHHHHHHHhCcc---cCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--he
Confidence 355688999999997642 1112222222221 12223233333334331 11 12445 77
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCC-----CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAKMNLS-----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 157 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~~~~~-----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 157 (173)
...+++++.+.++-.+++.+.+...... ..-.+..+...|.|.. +.|..++..+...+...+...|+.+++.++
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~ 262 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREV 262 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 8889999999999999999888654321 2235777899999985 559999999999999999999999999999
Q ss_pred HHhhC
Q 030674 158 YRTNV 162 (173)
Q Consensus 158 l~~~~ 162 (173)
+....
T Consensus 263 ~~~~~ 267 (269)
T TIGR03015 263 IAEID 267 (269)
T ss_pred HHHhh
Confidence 98865
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=7.3e-06 Score=71.26 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=87.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+.. ...+.||..|+ .+..++.+|.+|++++.|.+.|++ |+ ..++|++++.
T Consensus 120 ~KV~IIDEah~Ls~--------------~a~NALLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~ 180 (647)
T PRK07994 120 FKVYLIDEVHMLSR--------------HSFNALLKTLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDV 180 (647)
T ss_pred CEEEEEechHhCCH--------------HHHHHHHHHHH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCH
Confidence 35999999998752 45678888888 455678888888899999999998 86 7899999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
++-...++..+....+. +...+..++..+.| ++++.-+++..+... +...|+.+++...+
T Consensus 181 ~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 181 EQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 99999999887654443 22345667777665 677777777766432 22235555554433
No 79
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=8.8e-06 Score=70.05 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=94.4
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ..-|++|||+|.+.. ...+.|+..++. +..++++|.+|+.++.+++.++
T Consensus 104 ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 104 IRDIRDKVKYAPSEAKYKVYIIDEVHMLST--------------GAFNALLKTLEE--PPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred HHHHHHHHhhCcccCCeEEEEEECcccCCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHH
Confidence 45666666532 235999999997742 346678888874 4446677777788999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .+.|++|+.++-...++..+...++. +...+..++..+.| +.++..++++.+.... ...++.+++..
T Consensus 168 S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~~----~~~It~~~V~~ 239 (559)
T PRK05563 168 S--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISFG----DGKVTYEDALE 239 (559)
T ss_pred h--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 8 875 57899999999999999888765543 22346677887777 8888888888775432 23466666554
Q ss_pred HH
Q 030674 157 GY 158 (173)
Q Consensus 157 al 158 (173)
.+
T Consensus 240 vl 241 (559)
T PRK05563 240 VT 241 (559)
T ss_pred Hh
Confidence 43
No 80
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=3.1e-06 Score=70.91 Aligned_cols=135 Identities=12% Similarity=0.205 Sum_probs=86.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~--~~i~ 87 (173)
++.+|+|||++.+.++. .....+-.+++.+. ..++.+++.++..|. .+++.+++ ||. ..+.
T Consensus 202 ~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~---~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLH---TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIP 267 (445)
T ss_pred cCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHH---HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEe
Confidence 46799999999875422 11122223333321 223444554444454 56788998 995 8999
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHH-HHHh-cCCccCHHHHHHHHHhhC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMH-AVRK-NRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~-a~~~-~~~~i~~~d~~~al~~~~ 162 (173)
+++|+.++|..+++.......+. ++-.++.+|....| ..++|...+...+.. +... ...+++.+++.+++++..
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 99999999999999988776544 22234446665553 677777777766421 2222 235799999999998764
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=5e-06 Score=71.97 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=81.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
..|++|||+|.+.. ...+.||+.|+ ....++.+|.+||+++.|.+.|++ |+ ..+.|+.++.
T Consensus 125 ~KViIIDEah~Ls~--------------~AaNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~ 185 (700)
T PRK12323 125 FKVYMIDEVHMLTN--------------HAFNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPP 185 (700)
T ss_pred ceEEEEEChHhcCH--------------HHHHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCCh
Confidence 46999999998852 34678888888 455678899999999999999998 87 6799999999
Q ss_pred HHHHHHHHHHHccCCCCCc-CCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLSDE-VDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~-~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
++-.+.++..+....+..+ -.+..++..+.| ++++..+++..+..
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999998888765544422 235567776665 77788888776653
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=8e-06 Score=71.23 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=96.5
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+++.+... ...|++|||+|.+.. ...+.|+..|+. ....+.+|.+|+++..+.+.++
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~Ls~--------------~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECccccCH--------------HHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHH
Confidence 45666655322 236999999986531 345678888874 4456778888899999999998
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..+.|+.++.++-...++..+...++. +.-.+..|++.+. =+.+++.++++.++.. +...|+.+++..
T Consensus 168 S--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAlnLLDqaia~----g~g~It~e~V~~ 239 (709)
T PRK08691 168 S--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDALSLLDQAIAL----GSGKVAENDVRQ 239 (709)
T ss_pred H--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 7 87 568888999999999999888766544 2234677887775 4788998888877643 233577777766
Q ss_pred HHHh
Q 030674 157 GYRT 160 (173)
Q Consensus 157 al~~ 160 (173)
.+..
T Consensus 240 lLG~ 243 (709)
T PRK08691 240 MIGA 243 (709)
T ss_pred HHcc
Confidence 6543
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.27 E-value=4.1e-06 Score=64.46 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=83.0
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCC-eEEEEEeCCCCC---CCccccCCCCcc--ceecC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADT---LDPALLRPGRLD--RKIEF 88 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vi~ttn~~~~---ld~al~r~grf~--~~i~~ 88 (173)
.+|+|||++.+.++. .....+-.+++.+- ..++ .+++.+++.|.. +.+.|++ |+. .++.+
T Consensus 99 dlliiDdi~~~~~~~---------~~~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l 164 (235)
T PRK08084 99 SLVCIDNIECIAGDE---------LWEMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKL 164 (235)
T ss_pred CEEEEeChhhhcCCH---------HHHHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeee
Confidence 489999999875322 11223333343331 2333 455555556666 5789998 986 88999
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
++|+.++|.++++.......+. ++-.++.++..++| +.+.+..+++.....+.. .++.||...+.+++.
T Consensus 165 ~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-~~~~it~~~~k~~l~ 234 (235)
T PRK08084 165 QPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT-AQRKLTIPFVKEILK 234 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHc
Confidence 9999999999998855544443 22235567776664 788888888875433333 345688888877653
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.25 E-value=5.2e-06 Score=74.46 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
|+.+|+.++...|+||||||+|.+++.++... .. ....++. ..+ ..+.+.+|++|+..+ ..|+++
T Consensus 260 l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g--~~-~~a~lLk---p~l----~rg~l~~IgaTt~~ey~~~ie~D~aL 329 (821)
T CHL00095 260 LKRIFDEIQENNNIILVIDEVHTLIGAGAAEG--AI-DAANILK---PAL----ARGELQCIGATTLDEYRKHIEKDPAL 329 (821)
T ss_pred HHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC--cc-cHHHHhH---HHH----hCCCcEEEEeCCHHHHHHHHhcCHHH
Confidence 57899999888899999999999997653221 11 1122222 222 345788999998764 589999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHcc----CCCC-CcCCHHHHhcCCCCCC-----HHHHHHHHHHHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAK----MNLS-DEVDLEDYVSRPDKIS-----AAEIAAICQEAGMHA 141 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~----~~~~-~~~~~~~la~~t~g~s-----~~di~~l~~~a~~~a 141 (173)
.+ ||.. |.++.|+.++...|++..... ..+. ++-.+..++..+.||. |.---.++++|+...
T Consensus 330 ~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 330 ER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred Hh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 99 9975 799999999999999865432 2222 2223556666666654 444455667665544
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.24 E-value=3e-05 Score=62.19 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
+.+|+|||+|.+.. .....+...++.... ...+|.+++.+..+.+.+.+ |+ ..+.+++|+.
T Consensus 126 ~~vlilDe~~~l~~--------------~~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~ 186 (337)
T PRK12402 126 YKTILLDNAEALRE--------------DAQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTD 186 (337)
T ss_pred CcEEEEeCcccCCH--------------HHHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCH
Confidence 45999999997742 112234444543322 34455666677788888887 75 5789999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
++...+++..+...... +.-.+..++..+ ++|+..++......+ . ....|+.+++.+.+..
T Consensus 187 ~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~~~~-~-~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 187 DELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQTAA-L-AAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHH-H-cCCCCCHHHHHHHhCC
Confidence 99999999888766544 333466677765 344444444333333 2 2236888888876654
No 86
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-05 Score=69.63 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=91.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+-. ...+.|+..++. ...++.+|.+|+++..+++.+++ |+ ..+.|.+++.
T Consensus 119 ~KV~IIDEVh~LS~--------------~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~ 179 (702)
T PRK14960 119 FKVYLIDEVHMLST--------------HSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAV 179 (702)
T ss_pred cEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCH
Confidence 46999999997752 245678888874 44567788888899999999887 87 5799999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
++-...++..+...+.. ....+..++..+.| +.+++.+++..+... +...|+.+++...+.
T Consensus 180 eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~lLG 241 (702)
T PRK14960 180 DEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEMLG 241 (702)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHhc
Confidence 99999999888765544 33346778887776 888888888776532 334577777766543
No 87
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.22 E-value=2.7e-05 Score=64.67 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=88.5
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC-C-CCCCCcc
Q 030674 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-R-ADTLDPA 75 (173)
Q Consensus 2 l~~if~~A~~----~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-~-~~~ld~a 75 (173)
++.+++.++. ....+|+|||+|.+.. .....|+..+++ ..+++|++|+ + ...++++
T Consensus 77 ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 77 LREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCChhhhccHH
Confidence 4566666642 2468999999998752 122345555542 3566666543 3 4589999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCC--C-C-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN--L-S-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILP 151 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~--~-~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~ 151 (173)
+++ |+ ..+.+++|+.++...+++..+.... . . ++-.+..++..+.| .++.+.++++.+... ...|+.
T Consensus 139 L~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~ 209 (413)
T PRK13342 139 LLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----VDSITL 209 (413)
T ss_pred Hhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCH
Confidence 999 88 7799999999999999998876421 1 1 11235567777644 566666666665533 346888
Q ss_pred HHHHHHHHhhC
Q 030674 152 KDFEKGYRTNV 162 (173)
Q Consensus 152 ~d~~~al~~~~ 162 (173)
+++.+++....
T Consensus 210 ~~v~~~~~~~~ 220 (413)
T PRK13342 210 ELLEEALQKRA 220 (413)
T ss_pred HHHHHHHhhhh
Confidence 99888887643
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.6e-05 Score=67.19 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=97.6
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ..-|++|||+|.+.. ...+.|+..++. +...+.+|.+|+.++.+++.++
T Consensus 101 IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------------~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 101 IKVILENSCYLPISSKFKVYIIDEVHMLSN--------------SAFNALLKTLEE--PAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred HHHHHHHHHhccccCCceEEEEeChHhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHH
Confidence 45666666432 235999999987742 346778888884 4556777888888999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..++|.+++.++....++..+...+.. ++-.+..++..+.| +.+++.++++.+.... ...|+.+++..
T Consensus 165 S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~----~~~It~e~V~~ 236 (491)
T PRK14964 165 S--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS----NNKISEKSVRD 236 (491)
T ss_pred H--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 8 77 558999999999999998887765544 33346778888865 8899999888876433 23588888776
Q ss_pred HH
Q 030674 157 GY 158 (173)
Q Consensus 157 al 158 (173)
.+
T Consensus 237 ll 238 (491)
T PRK14964 237 LL 238 (491)
T ss_pred HH
Confidence 54
No 89
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=1.8e-05 Score=67.57 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=87.9
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.|+..++.. ...+.+|.+|+++..|++.+++ |. .+++|++++.+
T Consensus 119 KVvIIDEad~Lt~--------------~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ 179 (535)
T PRK08451 119 KIFIIDEVHMLTK--------------EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQN 179 (535)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHH
Confidence 4899999987742 3456788888853 4456677777889999999999 85 58999999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+-...++..+...+.. +.-.+..++..+.| +.+++.++++.+...+ ...++.+++...+
T Consensus 180 ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 180 SIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 9888888877765443 22346678887776 8899999888776543 2246666655443
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.6e-05 Score=66.72 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=93.8
Q ss_pred HHHHHHHHHHcCC-----eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 2 VRDVFRLAKENAP-----AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P-----~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
+|.+.+.+. ..| .|++|||+|.+.. ...+.|+..++. ....+.+|.+|++++.+.+.+
T Consensus 104 ir~l~~~~~-~~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 104 MRELLDNAQ-YAPTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred HHHHHHHHh-hCcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhH
Confidence 456666664 334 5999999997752 345678888884 445777888888899999888
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 155 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 155 (173)
++ |+ ..++|+.|+.++-...+...+...+.. +...+..++..+. -++++..++++.+... +...|+.+++.
T Consensus 167 ~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~lldqai~~----~~~~I~~~~v~ 238 (527)
T PRK14969 167 LS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALSLLDQAIAY----GGGTVNESEVR 238 (527)
T ss_pred HH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHh----cCCCcCHHHHH
Confidence 87 76 779999999999998888877655443 2223556666655 4678888888777543 33457777766
Q ss_pred HHHH
Q 030674 156 KGYR 159 (173)
Q Consensus 156 ~al~ 159 (173)
..+.
T Consensus 239 ~~~~ 242 (527)
T PRK14969 239 AMLG 242 (527)
T ss_pred HHHC
Confidence 5543
No 91
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.16 E-value=1.6e-05 Score=70.81 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=86.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------C----CCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F----DQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
.||+|||+|.+.... .+ ...+.|+..+|. + -.-+++++|+|+|.. .||++|+. |
T Consensus 418 ~villDEidk~~~~~----~g------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R 484 (784)
T PRK10787 418 PLFLLDEIDKMSSDM----RG------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--R 484 (784)
T ss_pred CEEEEEChhhccccc----CC------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--c
Confidence 478999999887532 11 123456665552 1 123689999999988 59999999 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHcc-----CCCC------CcCCHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHh----c
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAK-----MNLS------DEVDLEDYV-SRPDKISAAEIAAICQEAGMHAVRK----N 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~-----~~~~------~~~~~~~la-~~t~g~s~~di~~l~~~a~~~a~~~----~ 145 (173)
+. .|.++.++.++..+|.+.++-. ..+. ++--+..++ ..+..+-.+.|++.++..+...+.+ +
T Consensus 485 ~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~ 563 (784)
T PRK10787 485 ME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDK 563 (784)
T ss_pred ee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 95 7899999999999999988841 1111 111133343 3456677788888777765554443 1
Q ss_pred ---CCccCHHHHHHHHH
Q 030674 146 ---RYVILPKDFEKGYR 159 (173)
Q Consensus 146 ---~~~i~~~d~~~al~ 159 (173)
+..++.+++..-+.
T Consensus 564 ~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 564 SLKHIEINGDNLHDYLG 580 (784)
T ss_pred CCceeeecHHHHHHHhC
Confidence 13588888877664
No 92
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.2e-05 Score=62.46 Aligned_cols=133 Identities=14% Similarity=0.231 Sum_probs=87.2
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+++.+... .+.||+|||+|.+.. ...+.++..++. +....++|.+|+.+..+.+++.
T Consensus 93 i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 93 IRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHH
Confidence 34556655432 246999999997642 235667777764 3335566667778899999998
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .+++++|+.++...++...+...+.. +.-.+..++..+.| +.+.+.+.++.....+ +.. ++.+++..
T Consensus 157 s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~-it~~~v~~ 228 (367)
T PRK14970 157 S--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN-ITRQAVTE 228 (367)
T ss_pred h--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC-CCHHHHHH
Confidence 7 764 68999999999999888877765543 33346667776654 6676666666544322 222 66666655
Q ss_pred HH
Q 030674 157 GY 158 (173)
Q Consensus 157 al 158 (173)
.+
T Consensus 229 ~~ 230 (367)
T PRK14970 229 NL 230 (367)
T ss_pred Hh
Confidence 44
No 93
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.3e-05 Score=67.74 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCC-----eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 2 VRDVFRLAKENAP-----AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P-----~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
++.+.+.++ +.| -|++|||+|.+.. ...+.|+..|+. +..++++|.+|+.++.|++.+
T Consensus 104 ir~l~~~~~-~~p~~~~~KVvIIdev~~Lt~--------------~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 104 IRELRENVK-YLPSRSRYKIFIIDEVHMLST--------------NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred HHHHHHHHH-hccccCCceEEEEEChhhCCH--------------HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHH
Confidence 455555554 334 4999999997752 345778888884 455788888889999999999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 155 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 155 (173)
++ |+ ..++|..++.++-...+...+...... +.-.+..++..+.| +.++..++++.+..... ..++.+++.
T Consensus 167 ~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay~g----~~It~edV~ 238 (576)
T PRK14965 167 LS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAFCG----DAVGDDDVA 238 (576)
T ss_pred HH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcc----CCCCHHHHH
Confidence 98 76 478999999998888888877765544 33346677777776 77788777776553321 236666665
Q ss_pred HH
Q 030674 156 KG 157 (173)
Q Consensus 156 ~a 157 (173)
..
T Consensus 239 ~l 240 (576)
T PRK14965 239 EL 240 (576)
T ss_pred HH
Confidence 44
No 94
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=7.6e-05 Score=63.54 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+-||+|||+|.+. ....+.|+..++. ...++++|.+|+.+..+++.+.+ |+. .+.|++|+
T Consensus 116 ~~kVVIIDEad~ls--------------~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls 176 (504)
T PRK14963 116 GRKVYILDEAHMMS--------------KSAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLT 176 (504)
T ss_pred CCeEEEEECccccC--------------HHHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCC
Confidence 35699999998653 1346678888874 44567778888999999999998 764 69999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.++-...++..+....+. +.-.+..++..+.| ..+++.++++.+... ...++.+++...+.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 999999999888765544 22245667776664 566666666665321 23578887766654
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.1e-05 Score=69.26 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.|.. ...+.|++.|+. ...++++|++|+.++.|-+.|++ |+ .++.|..++.
T Consensus 121 ~KV~IIDEad~lt~--------------~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~ 181 (824)
T PRK07764 121 YKIFIIDEAHMVTP--------------QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPP 181 (824)
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCH
Confidence 46999999998853 346678888884 44577777788889999999998 76 5789999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAG 138 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~ 138 (173)
++-..+++..+....+. ....+..++..+.| +.+++.++++..+
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99888888887665543 22235556666665 7777777776644
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.2e-05 Score=65.72 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=96.0
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
||.+.+.++.. ..-||+|||+|.+.. ...+.|+..|+. ....+.+|.+|+.++.+.+.++
T Consensus 117 IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------------~a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 117 IREIIESVRYRPVSARYKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred HHHHHHHHHhchhcCCcEEEEEEChHhCCH--------------HHHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHH
Confidence 56677766533 146999999998742 346678888874 4446777777788888999998
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..+.|..|+.++-...++..++..... +.-.+..++..+.| +.+++.++++.+.... ...|+.+++..
T Consensus 181 S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~g----~g~It~e~V~~ 252 (598)
T PRK09111 181 S--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAHG----AGEVTAEAVRD 252 (598)
T ss_pred h--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCcCHHHHHH
Confidence 8 77 469999999999999998887765544 22345667777766 8888888888765432 23588888876
Q ss_pred HHH
Q 030674 157 GYR 159 (173)
Q Consensus 157 al~ 159 (173)
.+.
T Consensus 253 llg 255 (598)
T PRK09111 253 MLG 255 (598)
T ss_pred HhC
Confidence 553
No 97
>PRK04132 replication factor C small subunit; Provisional
Probab=98.09 E-value=6.1e-05 Score=67.36 Aligned_cols=116 Identities=20% Similarity=0.246 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCC------eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc
Q 030674 2 VRDVFRLAKENAP------AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 2 l~~if~~A~~~~P------~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (173)
||.+...+....| -|++|||+|.+.. ...+.|+..|+. +..++.+|.+||+++.+.+.
T Consensus 613 IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~--------------~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~t 676 (846)
T PRK04132 613 IREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEP 676 (846)
T ss_pred HHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--------------HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchH
Confidence 4555554443333 5999999998852 234567777873 45578899999999999999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
|++ |+ ..+.|++|+.++-...++.......+. ++-.+..++..+.| +.+..-++++.+
T Consensus 677 IrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~ 735 (846)
T PRK04132 677 IQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 735 (846)
T ss_pred Hhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 998 86 678999999999998888877654443 33356777776665 333333444433
No 98
>PRK04195 replication factor C large subunit; Provisional
Probab=98.08 E-value=6.9e-05 Score=63.50 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=82.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-cccCCCCccceecCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-ALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-al~r~grf~~~i~~~~p 91 (173)
.+.+|+|||+|.+.... +. .....++..++. .+..+|+++|++..++. .+++ | ...|.|++|
T Consensus 98 ~~kvIiIDEaD~L~~~~-------d~---~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~ 160 (482)
T PRK04195 98 RRKLILLDEVDGIHGNE-------DR---GGARAILELIKK----AKQPIILTANDPYDPSLRELRN--A-CLMIEFKRL 160 (482)
T ss_pred CCeEEEEecCccccccc-------ch---hHHHHHHHHHHc----CCCCEEEeccCccccchhhHhc--c-ceEEEecCC
Confidence 46899999999986421 11 223445555542 23457778899998887 5654 4 467999999
Q ss_pred CHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 92 DRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+..+...+++..+....+. +.-.+..++..+. +|+..+++.... ...+...++.+++....
T Consensus 161 ~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~--~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 161 STRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA--IAEGYGKLTLEDVKTLG 222 (482)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH--HhcCCCCCcHHHHHHhh
Confidence 9999999999888765543 3334677777654 577777766554 23344457777776554
No 99
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7e-05 Score=63.50 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=90.7
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... .+-|++|||+|.+.. ...+.|+..++. +...+++|.+|+.++.+++++.
T Consensus 104 ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLLk~LEe--pp~~~v~Il~tt~~~kl~~tI~ 167 (486)
T PRK14953 104 IRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALLKTLEE--PPPRTIFILCTTEYDKIPPTIL 167 (486)
T ss_pred HHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCHHHHHHHHH
Confidence 34555555432 246999999997642 234667777874 3445666666777889999998
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .+.|++|+.++....++..+...++. +.-.+..++..+.| +.+++.++++.+... +...++.+++.+
T Consensus 168 S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~----~~~~It~~~V~~ 239 (486)
T PRK14953 168 S--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTY----GEGKVTIKVVEE 239 (486)
T ss_pred H--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHH
Confidence 8 775 69999999999999999888766554 22235667776654 677787887776533 233577777766
Q ss_pred HH
Q 030674 157 GY 158 (173)
Q Consensus 157 al 158 (173)
.+
T Consensus 240 ~l 241 (486)
T PRK14953 240 FL 241 (486)
T ss_pred Hh
Confidence 54
No 100
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=2.2e-05 Score=60.11 Aligned_cols=128 Identities=20% Similarity=0.135 Sum_probs=84.0
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---CccccCCCCcc--ceecCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLD--RKIEFP 89 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~--~~i~~~ 89 (173)
.+|+|||+|.+.. .. ..+-.+++.+ ...++.++|+++..|..+ .+.+++ ||. .++++.
T Consensus 89 ~~l~iDDi~~~~~--------~~----~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGF--------DE----TGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCC--------CH----HHHHHHHHHH---HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecC
Confidence 4788999997521 11 1122333333 344456666666655544 567888 885 889999
Q ss_pred CCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 90 LPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 90 ~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+|+.+.|.++++..+....+. ++-.++.++.... =+.+.+..++.+-...+...+ +++|...+.++++.+
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 999999999999998776554 3334566777666 355566655555544444443 578999999988765
No 101
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5.6e-05 Score=67.62 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=80.4
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+.. ...+.|+..|+. +..++.+|.+|+.+..|.+.|++ |+ ..+.|++++.
T Consensus 120 ~KViIIDEAh~LT~--------------eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~ 180 (944)
T PRK14949 120 FKVYLIDEVHMLSR--------------SSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQ 180 (944)
T ss_pred cEEEEEechHhcCH--------------HHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCH
Confidence 35999999998842 456788888884 55567777788899999999998 77 6799999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAG 138 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~ 138 (173)
++-...+++.+....+. .+-.+..++..+.| +++++-+++..+.
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 99999999887654333 22236667777766 6778888887666
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=3e-05 Score=66.88 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=90.4
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ..-|++|||+|.+.. ...+.|+..|+. +...+++|++|+.++.|.+.++
T Consensus 104 IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 104 IRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred HHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHH
Confidence 45566555432 124999999997742 234678888874 4456778888888999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .++|++|+.++....++..+...+.. +.-.+..++..+.| ++++..++++...... +. .++.+++..
T Consensus 168 S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~e 239 (605)
T PRK05896 168 S--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLSTFK---NS-EIDIEDINK 239 (605)
T ss_pred h--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHH
Confidence 8 875 69999999999999998877665433 22346677777765 6777777777643221 11 266665555
Q ss_pred H
Q 030674 157 G 157 (173)
Q Consensus 157 a 157 (173)
.
T Consensus 240 l 240 (605)
T PRK05896 240 T 240 (605)
T ss_pred H
Confidence 3
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=4.3e-05 Score=58.78 Aligned_cols=128 Identities=14% Similarity=0.178 Sum_probs=82.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---CccccCCCCcc--ceecCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLD--RKIEFP 89 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~--~~i~~~ 89 (173)
-+|+|||++.+.++. .....+-.+++. +..+++.++++++..|..+ .+.+++ ||. ..+.+.
T Consensus 99 d~LiiDDi~~~~~~~---------~~~~~Lf~l~n~---~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~ 164 (234)
T PRK05642 99 ELVCLDDLDVIAGKA---------DWEEALFHLFNR---LRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMR 164 (234)
T ss_pred CEEEEechhhhcCCh---------HHHHHHHHHHHH---HHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecC
Confidence 478899999775332 111223333333 3445567777777666655 578888 884 778889
Q ss_pred CCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 90 LPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 90 ~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+|+.++|.++++.......+. ++-.++.++...+ -+.+.+..+++.--..+.. .++++|..-+.+++
T Consensus 165 ~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 165 GLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 999999999999544443333 2223555666655 4888888888876544433 34568877777665
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.02 E-value=5.7e-05 Score=60.10 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=82.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
+.+|+|||+|.+... ....|...++.... ...+|.++|.+..+.+.+.+ |+. .+++++|+.
T Consensus 103 ~~vviiDe~~~l~~~--------------~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~ 163 (319)
T PRK00440 103 FKIIFLDEADNLTSD--------------AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKK 163 (319)
T ss_pred ceEEEEeCcccCCHH--------------HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCH
Confidence 459999999987421 12345555554333 34566677888888888887 765 589999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
++...+++..+...... +.-.+..++..+.| ..+.+.+.++.+... ...++.+++..++...
T Consensus 164 ~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~~~~ 226 (319)
T PRK00440 164 EAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-----GKEVTEEAVYKITGTA 226 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHhCCC
Confidence 99999999988765543 23357778777655 555555555544432 2468888887766443
No 105
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00022 Score=58.45 Aligned_cols=134 Identities=22% Similarity=0.275 Sum_probs=95.4
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC---CCCCccccCCCCcc-ceec
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLRPGRLD-RKIE 87 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r~grf~-~~i~ 87 (173)
..+.||++||+|.|....+ .++-.|+..-+.. ..++.+|+.+|.. +.+|+.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 3468999999999986541 3455555555543 6689999999986 478888887 655 5589
Q ss_pred CCCCCHHHHHHHHHHHHccC----CCCCcC--CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 88 FPLPDRRQKRLVFQVCTAKM----NLSDEV--DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~----~~~~~~--~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||+=+.+|-..|++.-.... ..++++ -+..++....| ..+---.+++.|...|-+++...++.+++..|....
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 99999999999998766532 222221 12334444455 444445588899999999999999999999995443
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=8.9e-05 Score=65.23 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=91.3
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ...|++|||+|.+.. ...+.|+..|+. +...+++|.+|+.++.|++.++
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHH
Confidence 45666666533 236999999998752 246678888884 4557778888889999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+. .+.|.+|+.++....++..+...++. ....+..+|..+.| +.+++..++....... ...++.+++..
T Consensus 167 S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~~y~----~~~It~e~V~e 238 (725)
T PRK07133 167 S--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVSIFG----NNKITLKNVEE 238 (725)
T ss_pred h--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 8 885 79999999999999998877665444 22235567766654 6677777777654321 12266665554
Q ss_pred H
Q 030674 157 G 157 (173)
Q Consensus 157 a 157 (173)
.
T Consensus 239 l 239 (725)
T PRK07133 239 L 239 (725)
T ss_pred H
Confidence 3
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.02 E-value=5.8e-05 Score=55.87 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=67.1
Q ss_pred HHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC
Q 030674 3 RDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 3 ~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
+.+.+.+... .+-||+|||+|.+.. ...+.|+..++. ......+|.+|+++..+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNE--------------AAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCH--------------HHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh
Confidence 4445555432 346999999998753 234567888875 34456677778888999999998
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCC
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDK 124 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 124 (173)
|+ ..++|++|+.++...+++.. .+++ ..+..++..+.|
T Consensus 146 --r~-~~~~~~~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 146 --RC-QVLPFPPLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred --hc-EEeeCCCCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 77 48999999999988888765 2322 234455554444
No 108
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.95 E-value=7.9e-05 Score=56.74 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=79.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CC--CCCccccCCCCc--cceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-AD--TLDPALLRPGRL--DRKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~--~ld~al~r~grf--~~~i~ 87 (173)
.+.+|+|||+|.+-.. ....+..+++.. ....+.++|.+++. |. .+.+.+.+ || ...++
T Consensus 90 ~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~---~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 90 EAELYAVDDVERLDDA-----------QQIALFNLFNRV---RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred cCCEEEEeChhhcCch-----------HHHHHHHHHHHH---HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 3578999999976311 112233333333 23334334444443 22 24456666 76 57999
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
+++|+.+++..+++.+.....+. +.--+..++... +=+++++..+++.-...+. ..+++||...+.+.+.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~~l~~l~~~~~-~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMALLDALDRYSL-EQKRPVTLPLLREMLA 224 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHh
Confidence 99999989999999877665444 222355677743 3488888888887444343 3446899888888774
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00015 Score=62.59 Aligned_cols=121 Identities=13% Similarity=0.170 Sum_probs=87.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+.. ...+.|+..++. +...+++|.+|+.+..+.++|++ |+. .++|.+|+.
T Consensus 120 ~KVvIIDEa~~Ls~--------------~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~ 180 (563)
T PRK06647 120 YRVYIIDEVHMLSN--------------SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSL 180 (563)
T ss_pred CEEEEEEChhhcCH--------------HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCH
Confidence 46999999997742 345678888873 55577777888889999999998 875 589999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
++....++..+...... +.-.+..++..+.| +.+++.++++.+...+ ...++.+++...+
T Consensus 181 ~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 181 EKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 99999998877654443 22346667777776 8888888887765332 2346666665544
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=9.2e-05 Score=64.17 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=83.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
..||+|||+|.+.. ...+.|+..++. ...++++|++|+.++.+.+.+++ |+. .+.|+.++.
T Consensus 120 ~kVIIIDEad~Lt~--------------~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~ 180 (624)
T PRK14959 120 YKVFIIDEAHMLTR--------------EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSE 180 (624)
T ss_pred ceEEEEEChHhCCH--------------HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCH
Confidence 46999999998752 335678888874 44578888889999999999988 874 689999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
++-..+++..+...... +.-.+..++..+.| +.++..+++..+. ..+...|+.+++..++
T Consensus 181 ~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 181 AGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 99999998877665433 22345667776553 4555555555432 2233357777665544
No 111
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=97.95 E-value=7.4e-05 Score=60.48 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=90.4
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------C--CCCCCeEEEEEeCCCC-CCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRAD-TLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (173)
..+||+||++.+-. ...+.+++.|+. . ....++++|+|.|-.+ .+++++.. |
T Consensus 132 ~GvL~lDEi~~L~~--------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLED--------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCH--------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 47999999998642 333445554432 1 1123578888877544 69999999 9
Q ss_pred ccceecCCCCCH-HHHHHHHHHHHccC----C----CC-----------------CcCC--------HHHHhcCCCCCCH
Q 030674 82 LDRKIEFPLPDR-RQKRLVFQVCTAKM----N----LS-----------------DEVD--------LEDYVSRPDKISA 127 (173)
Q Consensus 82 f~~~i~~~~p~~-~~R~~il~~~l~~~----~----~~-----------------~~~~--------~~~la~~t~g~s~ 127 (173)
|...+.++.|.. ++|.+|++...... . .. +.+. +.+++..+..-++
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999999985 89999998743210 0 00 0111 2234444443366
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+--..+++.|...|.-.++..|+.+|+..+..-+.+
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~ 311 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR 311 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 777778888999999999999999999988765443
No 112
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.94 E-value=0.00012 Score=62.14 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=78.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
|+|+++.|++.++.. ....+.+..+..... ...+.+|+.+. .-.+|+.|.+ +-.++.+|.|+.
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~---~~~~~~i~~~~--~~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILK---TQPKTIIIIAS--ELNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHH---hCCCEEEEEcC--CCCCCHHHHh---ceeEEeecCcCH
Confidence 789999999999832 123455555555443 34455555554 2568888764 456789999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAG 138 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~ 138 (173)
+|...+++.+....... ++-+++.++..+.|+|..++..++..+.
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999998887654333 3456889999999999999999988754
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00018 Score=60.57 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=83.9
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
...||+|||+|.+.. ...+.|+..++. +...+++|++|+.+..|.+.+++ |+. .++|+.++
T Consensus 121 ~~kvvIIdead~lt~--------------~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~ 181 (451)
T PRK06305 121 RYKIYIIDEVHMLTK--------------EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIP 181 (451)
T ss_pred CCEEEEEecHHhhCH--------------HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCC
Confidence 468999999997752 235678888885 34477777788889999999998 774 68999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
.++-...++..++..+.. +...+..++..+.| +.+++.+.++..... .+ ..++.+++.+.+
T Consensus 182 ~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 182 EETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 999888888877655433 22346667776654 666666666654322 11 236666554443
No 114
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.90 E-value=7.2e-05 Score=61.70 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=94.1
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC---ccccCCCCcc--ceecC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRLD--RKIEF 88 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf~--~~i~~ 88 (173)
--+++|||++.+.++. +.-..|...+..+...++-+|+.+-..|..++ +.|++ ||+ ..+.+
T Consensus 176 ~dlllIDDiq~l~gk~------------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I 241 (408)
T COG0593 176 LDLLLIDDIQFLAGKE------------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEI 241 (408)
T ss_pred cCeeeechHhHhcCCh------------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEee
Confidence 3589999999988653 11122333333334455555666656677666 78888 877 56789
Q ss_pred CCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCCC
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 165 (173)
.+|+.+.|..+++.......+. ++--+.-+|.... =+.++|+.++.+....+.-.++ .+|...+.++++......
T Consensus 242 ~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 242 EPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccc
Confidence 9999999999999977666555 3323444555443 4888999988888777766654 789999999888877654
No 115
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.89 E-value=0.00011 Score=63.65 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=95.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC---CCCcc-ceecC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR---PGRLD-RKIEF 88 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r---~grf~-~~i~~ 88 (173)
.|+||+|||+|.|+..+ +.++-.|.++.. ..+++++||+.+|..+ +|..++- ..|++ ..|.|
T Consensus 508 ~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMD-LPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEeccccc-CHHHHhccchhhhccceeeec
Confidence 47999999999999644 356666666554 4566888888888655 5544432 22554 56888
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCH--HHHHHHHHHHHHHHHHhcC-------CccCHHHHHHHHH
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISA--AEIAAICQEAGMHAVRKNR-------YVILPKDFEKGYR 159 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~--~di~~l~~~a~~~a~~~~~-------~~i~~~d~~~al~ 159 (173)
.+=+.+|-++|+...|.....-.+-.++-+|..-...|| +--..+|++|...|-.++. ..++..++.+|+.
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~ 653 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAIN 653 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHH
Confidence 899999999999999987643332233334443333332 3344588889888877764 5689999999998
Q ss_pred hhCCCC
Q 030674 160 TNVKKP 165 (173)
Q Consensus 160 ~~~p~~ 165 (173)
.+..+.
T Consensus 654 em~~~~ 659 (767)
T KOG1514|consen 654 EMLASP 659 (767)
T ss_pred HHhhhh
Confidence 887553
No 116
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.88 E-value=0.00025 Score=60.55 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=90.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCCC------------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRAD------------ 70 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~~------------ 70 (173)
..+++|||+|.+-. .....|+..|+.- .-..+..||||+|-.+
T Consensus 301 ~Gil~iDEi~~l~~--------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 301 NGVCCIDEFDKMDD--------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCEEEEechhhCCH--------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 46889999987642 2233444444321 0124688999999543
Q ss_pred -CCCccccCCCCcccee-cCCCCCHHHHHHHHHHHHccCC-----------------------------CCCcCC-----
Q 030674 71 -TLDPALLRPGRLDRKI-EFPLPDRRQKRLVFQVCTAKMN-----------------------------LSDEVD----- 114 (173)
Q Consensus 71 -~ld~al~r~grf~~~i-~~~~p~~~~R~~il~~~l~~~~-----------------------------~~~~~~----- 114 (173)
.|++++++ |||... ....|+.+.+.+|.++.+.... ..+.+.
T Consensus 367 ~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~ 444 (509)
T smart00350 367 IDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAE 444 (509)
T ss_pred cCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 69999999 999754 5579999999999988653211 000000
Q ss_pred -HHHH--h-c---------CCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 115 -LEDY--V-S---------RPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 115 -~~~l--a-~---------~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+.++ . + ..-|.|++.++.+++-|...|..+.+..|+.+|+..|++-+.
T Consensus 445 ~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 445 KLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 0000 0 0 123679999999999999999999999999999999998664
No 117
>PLN03025 replication factor C subunit; Provisional
Probab=97.87 E-value=0.00016 Score=58.03 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=76.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
+.||+|||+|.+... ..+.|+..++... ....+|.++|.+..+.++|++ |+ ..+.|++|+.
T Consensus 100 ~kviiiDE~d~lt~~--------------aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~ 160 (319)
T PLN03025 100 HKIVILDEADSMTSG--------------AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSD 160 (319)
T ss_pred eEEEEEechhhcCHH--------------HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCCH
Confidence 579999999987531 1234555555332 234466788888899999998 76 5799999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
++....++..++..+.. ++-.+..++..+.| ..+.+.+.++.+. .+...++.+++..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~ 218 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH-----SGFGFVNQENVFK 218 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 99999998887665443 23346667765553 4455555444221 1223466666543
No 118
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=0.00018 Score=54.64 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=82.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC--CCccccCCCCcc--ceecCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT--LDPALLRPGRLD--RKIEFP 89 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~--ld~al~r~grf~--~~i~~~ 89 (173)
..+|+|||+|.+- ...+-.+++.+ ...++.++|+++..|.. + +++++ |+. .++.+.
T Consensus 86 ~d~lliDdi~~~~--------------~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~ 145 (214)
T PRK06620 86 YNAFIIEDIENWQ--------------EPALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLN 145 (214)
T ss_pred CCEEEEeccccch--------------HHHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeC
Confidence 3689999999430 02233444444 34456777777777665 5 67888 876 468999
Q ss_pred CCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 90 LPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 90 ~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+|+.+.+..+++.......+. ++-.++.++..++ =+.+.+..++......+.. .++.||...+.+++
T Consensus 146 ~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 146 SPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP-REYSKIIEILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 999999999998887755443 3334566777665 4788888888875433333 34578888887765
No 119
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00018 Score=61.68 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=92.2
Q ss_pred HHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC
Q 030674 3 RDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 3 ~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
+.+.+.+... ..-|++|||+|.+.. ...+.|+..|+. +...+.+|++|+++..+.+.+++
T Consensus 105 r~ii~~~~~~p~~g~~kViIIDEa~~ls~--------------~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 105 KEILDNIQYMPSQGRYKVYLIDEVHMLSK--------------QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS 168 (546)
T ss_pred HHHHHHHHhhhhcCCcEEEEEechhhccH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH
Confidence 4555555422 246999999997642 355678888884 44567777777789999989888
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 157 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 157 (173)
|+ ..++|.+++.++-...++..+...+.. +...+..++..+ |-+.+++.++++.+..... ..++.+++.+.
T Consensus 169 --Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s-~GdlR~alnlLek~i~~~~----~~It~~~V~~~ 240 (546)
T PRK14957 169 --RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA-KGSLRDALSLLDQAISFCG----GELKQAQIKQM 240 (546)
T ss_pred --he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcc----CCCCHHHHHHH
Confidence 77 779999999999888888877765444 223456666666 4577888888877664321 34777777665
Q ss_pred HH
Q 030674 158 YR 159 (173)
Q Consensus 158 l~ 159 (173)
+.
T Consensus 241 l~ 242 (546)
T PRK14957 241 LG 242 (546)
T ss_pred Hc
Confidence 43
No 120
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.84 E-value=9.8e-05 Score=62.63 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=87.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.=|.+|||++-|.. ..++.||..++ .+..+|.+|.+|..++.+|..+++ |+. .+.|...+.
T Consensus 120 yKVyiIDEvHMLS~--------------~afNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~ 180 (515)
T COG2812 120 YKVYIIDEVHMLSK--------------QAFNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDL 180 (515)
T ss_pred ceEEEEecHHhhhH--------------HHHHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCH
Confidence 35999999987652 67889999998 567789999999999999999998 764 478899999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a 141 (173)
++-...+...+....+. ++--+.-+|...+| |.+|-..+++.+....
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHcc
Confidence 99999999999877666 33346778888877 7899999999887554
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.83 E-value=2e-05 Score=59.98 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=69.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---CccccCCCCccc--eec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---DPALLRPGRLDR--KIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---d~al~r~grf~~--~i~ 87 (173)
+.-+|+|||++.+..+. ..+..+-.+++.+ ...++.+|+.+...|..+ ++.+++ ||.. .+.
T Consensus 97 ~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~---~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~ 162 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ---------RTQEELFHLFNRL---IESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVE 162 (219)
T ss_dssp TSSEEEEETGGGGTTHH---------HHHHHHHHHHHHH---HHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEE
T ss_pred cCCEEEEecchhhcCch---------HHHHHHHHHHHHH---HhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhh
Confidence 45799999999886432 1223333444443 344566666666667765 466777 7764 889
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMH 140 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~ 140 (173)
+.+|+.+.|..+++.......+. ++--+.-++...+ -+.++|+.++++-...
T Consensus 163 l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 163 LQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp E----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 99999999999999988877665 3223444666544 4888888888775443
No 122
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.82 E-value=0.00034 Score=56.62 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=86.7
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCCC-CCCccccCCCCc
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRAD-TLDPALLRPGRL 82 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~~-~ld~al~r~grf 82 (173)
.+||+||++.+-. ...+.+++.|+.- ....++++++|+|-.+ .+++++.. ||
T Consensus 130 GiL~lDEInrl~~--------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF 193 (334)
T PRK13407 130 GYLYIDEVNLLED--------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RF 193 (334)
T ss_pred CeEEecChHhCCH--------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hc
Confidence 5899999997642 3445555555421 1234688888888544 68999999 99
Q ss_pred cceecCCCCCH-HHHHHHHHHHHccCC----C------CC---------------cCC--------HHHHhcCC--CCCC
Q 030674 83 DRKIEFPLPDR-RQKRLVFQVCTAKMN----L------SD---------------EVD--------LEDYVSRP--DKIS 126 (173)
Q Consensus 83 ~~~i~~~~p~~-~~R~~il~~~l~~~~----~------~~---------------~~~--------~~~la~~t--~g~s 126 (173)
...+.+++|.. ++|.++++....... . .. .+. +-+++..+ +| .
T Consensus 194 ~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~ 272 (334)
T PRK13407 194 GLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-L 272 (334)
T ss_pred ceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-c
Confidence 99999999986 999999987533210 0 00 000 12233333 23 4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
-++|. +++.|...|+..++..|+.+|+..+..-.
T Consensus 273 Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 273 RGELT-LLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred hHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 45555 88889999999999999999998776433
No 123
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.81 E-value=0.00036 Score=61.86 Aligned_cols=126 Identities=17% Similarity=0.132 Sum_probs=79.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC-CC-CCCCccccCCCCccceecCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-RA-DTLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-~~-~~ld~al~r~grf~~~i~~~~ 90 (173)
...+|+|||+|.+... ....|+..++ ...+++|++|+ ++ ..+++++++ |. ..+.|++
T Consensus 109 ~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~p 167 (725)
T PRK13341 109 KRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKS 167 (725)
T ss_pred CceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCC
Confidence 4579999999987521 1233444443 23566666543 33 468899998 74 5699999
Q ss_pred CCHHHHHHHHHHHHcc-------CCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--CCccCHHHHHHHHHh
Q 030674 91 PDRRQKRLVFQVCTAK-------MNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN--RYVILPKDFEKGYRT 160 (173)
Q Consensus 91 p~~~~R~~il~~~l~~-------~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~--~~~i~~~d~~~al~~ 160 (173)
++.+++..+++..+.. ..+. ++-.+..++..+.| ..+++.++++.+...+.... ...++.+++.+++.+
T Consensus 168 Ls~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 168 LSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 9999999999998862 1121 22235667776644 56677777776653322111 123777777777655
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00047 Score=59.85 Aligned_cols=121 Identities=16% Similarity=0.181 Sum_probs=85.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-||+|||+|.+.. ...+.|+..++. .....++|.+++.++.+.+.+++ |+. .++|..++.
T Consensus 121 ~kVvIIDEa~~L~~--------------~a~naLLk~LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~ 181 (585)
T PRK14950 121 YKVYIIDEVHMLST--------------AAFNALLKTLEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSV 181 (585)
T ss_pred eEEEEEeChHhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCH
Confidence 45999999997742 335667888874 33456777777888888888887 764 588999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
.+-...++..+....+. +.-.+..++..+.| +++++.+.++..... ....++.+++...+
T Consensus 182 ~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 99998888887665443 22346678877776 888888887764331 23357777766544
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00032 Score=60.66 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=84.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.|+..|+ ....++++|.+|+.++.|.+.|++ |. ..++|..++.+
T Consensus 120 KVvIIDEah~Lt~--------------~A~NALLK~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~ 180 (584)
T PRK14952 120 RIFIVDEAHMVTT--------------AGFNALLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPR 180 (584)
T ss_pred eEEEEECCCcCCH--------------HHHHHHHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHH
Confidence 5999999998752 34667888888 455578888888889999999998 84 67999999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+-.+.++..+...+.. ++..+..++.. .|-+.++..++++..+... +...|+.+++...+
T Consensus 181 ~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR~aln~Ldql~~~~---~~~~It~~~v~~ll 241 (584)
T PRK14952 181 TMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPRDTLSVLDQLLAGA---ADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHhcc---CCCCcCHHHHHHHH
Confidence 9888888887765543 22234445554 4457888888887764322 12345655555443
No 126
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.69 E-value=0.0003 Score=61.05 Aligned_cols=133 Identities=15% Similarity=0.180 Sum_probs=87.8
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------CC--CCCCeEEEEEeCCCC---CCCccccCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------FD--QTVNVKVIMATNRAD---TLDPALLRPG 80 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~--~~~~v~vi~ttn~~~---~ld~al~r~g 80 (173)
.+||+||++.+-+ ...+.|+..|+. .. ...++.+|+|+|..+ .+++++..
T Consensus 86 GvL~lDEi~rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 86 GVLYVDMANLLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred CcEeccchhhCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 5899999997753 344556665542 11 123588889888765 79999999
Q ss_pred CccceecCCC-CCHHHHHHHHHHHHccCC----C---------------CCcC-----CHHHHhcCC--CCCC-HHHHHH
Q 030674 81 RLDRKIEFPL-PDRRQKRLVFQVCTAKMN----L---------------SDEV-----DLEDYVSRP--DKIS-AAEIAA 132 (173)
Q Consensus 81 rf~~~i~~~~-p~~~~R~~il~~~l~~~~----~---------------~~~~-----~~~~la~~t--~g~s-~~di~~ 132 (173)
||+..+.+.. |..++|.+|++..+.... . .+.+ .+..++..+ -|.+ ++--..
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~ 229 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLF 229 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9999887775 457889999987653210 0 0001 112222221 2443 555556
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 133 ICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 133 l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+++-|...|.-+++..|+.+|+..++.-+.+
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Confidence 6777888888889999999999999976653
No 127
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.69 E-value=0.00029 Score=57.26 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=89.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------C--CCCCCeEEEEEeCCCC-CCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F--DQTVNVKVIMATNRAD-TLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~--~~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (173)
..+||+||++.+-+ ...+.|+..|+. . ....++++|+|.|-.+ .+++++.. |
T Consensus 145 ~GiL~lDEInrL~~--------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--R 208 (350)
T CHL00081 145 RGILYVDEVNLLDD--------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 208 (350)
T ss_pred CCEEEecChHhCCH--------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--H
Confidence 47999999998753 233345554432 1 1223577777777544 59999999 9
Q ss_pred ccceecCCCCC-HHHHHHHHHHHHccC--CCC-----------------------CcCC--------HHHHhcCCCCCCH
Q 030674 82 LDRKIEFPLPD-RRQKRLVFQVCTAKM--NLS-----------------------DEVD--------LEDYVSRPDKISA 127 (173)
Q Consensus 82 f~~~i~~~~p~-~~~R~~il~~~l~~~--~~~-----------------------~~~~--------~~~la~~t~g~s~ 127 (173)
|...+.++.|+ .+.|.+|++...... ... +.+. +.+++..+.--++
T Consensus 209 f~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~ 288 (350)
T CHL00081 209 FGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGL 288 (350)
T ss_pred hCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCC
Confidence 99999999998 699999998753211 000 0010 2233444433467
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+---.+++.|...|+-.++..|+.+|+..+..-+.
T Consensus 289 Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 289 RGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 77777778888889899999999999999886544
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.64 E-value=0.00075 Score=58.91 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=65.6
Q ss_pred eEEE-EEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 60 VKVI-MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 60 v~vi-~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
+++| +||++++.+++++++ ||. .+++++++.++...|++.++...... ++--+..++..+. .++...+++..+
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~ 398 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADV 398 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHH
Confidence 4444 466779999999998 987 57899999999999999988765432 2223444555543 445555555555
Q ss_pred HHHHHHh--------cCCccCHHHHHHHHHhhC
Q 030674 138 GMHAVRK--------NRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 138 ~~~a~~~--------~~~~i~~~d~~~al~~~~ 162 (173)
...+..+ ....|+.+|+.+++..-+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 399 YGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 4333211 123699999999997654
No 129
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00058 Score=55.98 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcC----CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEE-EeCCCC-CCCcc
Q 030674 2 VRDVFRLAKENA----PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM-ATNRAD-TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~~~----P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~-ttn~~~-~ld~a 75 (173)
||.+|+.|+... ..|||+||++.+-... ...||-.++ +..|++|+ ||.+|. .|.++
T Consensus 89 lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~vE----~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 89 LREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVE----NGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhhc----CCeEEEEeccCCCCCeeecHH
Confidence 689999996544 5999999999886422 234666664 33566665 555555 89999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccC--CCC-CcC-----CHHHHhcCCCCCCHHHHHHHHHHHHHHHH--Hhc
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM--NLS-DEV-----DLEDYVSRPDKISAAEIAAICQEAGMHAV--RKN 145 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~--~~~-~~~-----~~~~la~~t~g~s~~di~~l~~~a~~~a~--~~~ 145 (173)
|++ |. .++++.+.+.++-.+++...+... .+. ..+ -++.++. .+.+|...+++..-..+. +.+
T Consensus 151 LlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~----~s~GD~R~aLN~LE~~~~~~~~~ 223 (436)
T COG2256 151 LLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR----LSNGDARRALNLLELAALSAEPD 223 (436)
T ss_pred Hhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHH----hcCchHHHHHHHHHHHHHhcCCC
Confidence 998 75 568999999999999998854332 222 111 1333555 455566666553322222 222
Q ss_pred CCccCHHHHHHHHHhhCCCC
Q 030674 146 RYVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 146 ~~~i~~~d~~~al~~~~p~~ 165 (173)
. .+..+++.+.+.+..+..
T Consensus 224 ~-~~~~~~l~~~l~~~~~~~ 242 (436)
T COG2256 224 E-VLILELLEEILQRRSARF 242 (436)
T ss_pred c-ccCHHHHHHHHhhhhhcc
Confidence 2 455777777776655543
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00091 Score=58.40 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=79.4
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.+... ..-|++|||+|.+.. ...+.|+..++. ....+++|++|++++.+-+.|+
T Consensus 106 IReii~~a~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 106 IRELIERAQFAPVQARWKVYVIDECHMLST--------------AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred HHHHHHHHhhChhcCCceEEEEECccccCH--------------HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHH
Confidence 46666666432 236999999997742 345678888883 4456777888888999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQE 136 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~ 136 (173)
+ |+ ..++|+.++.++-...+.+...+.... ....+..++..+.| ..++..++++.
T Consensus 170 S--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 170 S--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred h--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 8 76 458888998888777777766654333 22236667777765 34666666654
No 131
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00013 Score=59.17 Aligned_cols=69 Identities=16% Similarity=0.336 Sum_probs=58.2
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++||++|.+.. ...+.||+.++ .+..++++|.+|++++.|.|.+++ |+ ..+.|++|+.+
T Consensus 134 kV~iI~~ae~m~~--------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~ 194 (342)
T PRK06964 134 RVVVLYPAEALNV--------------AAANALLKTLE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPE 194 (342)
T ss_pred eEEEEechhhcCH--------------HHHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHH
Confidence 4888888887652 45678999999 577789999999999999999999 88 57999999999
Q ss_pred HHHHHHHH
Q 030674 95 QKRLVFQV 102 (173)
Q Consensus 95 ~R~~il~~ 102 (173)
+..+.+..
T Consensus 195 ~~~~~L~~ 202 (342)
T PRK06964 195 AAAAWLAA 202 (342)
T ss_pred HHHHHHHH
Confidence 88888765
No 132
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00021 Score=57.76 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=59.1
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++||++|.+.. ...+.|++.+++ +..++++|.+|++++.|.+.+++ |+.. +.|++|+.
T Consensus 107 ~kv~iI~~a~~m~~--------------~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~ 167 (328)
T PRK05707 107 RKVVLIEPAEAMNR--------------NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSN 167 (328)
T ss_pred CeEEEECChhhCCH--------------HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCH
Confidence 45889999998763 456789999984 55688999999999999999999 8866 99999999
Q ss_pred HHHHHHHHHH
Q 030674 94 RQKRLVFQVC 103 (173)
Q Consensus 94 ~~R~~il~~~ 103 (173)
++-...+...
T Consensus 168 ~~~~~~L~~~ 177 (328)
T PRK05707 168 EESLQWLQQA 177 (328)
T ss_pred HHHHHHHHHh
Confidence 9888777654
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.61 E-value=0.00026 Score=58.58 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=83.5
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.|+..++. +....++|.+|+.+..+.+.+++ |+. .++|++++.+
T Consensus 129 kvvIIdea~~l~~--------------~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ 189 (397)
T PRK14955 129 RVYIIDEVHMLSI--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLE 189 (397)
T ss_pred EEEEEeChhhCCH--------------HHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHH
Confidence 5999999998752 234567777773 34456666666778888888887 764 7999999998
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-hcCCccCHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR-KNRYVILPKDFEKGY 158 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~-~~~~~i~~~d~~~al 158 (173)
+-...++..+...... +.-.+..++..+.| +.+.+.+.++.....+.. .....|+.+++.+.+
T Consensus 190 ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 190 EIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 8888888877654433 22245667776665 777777777765544321 123467877776655
No 134
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0003 Score=57.31 Aligned_cols=101 Identities=14% Similarity=0.173 Sum_probs=69.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
..-|++|||+|.+.. ...+.++..++. +..+.++|..|+.++.+.+.+++ |+ ..+.|++|+
T Consensus 141 ~~rVviIDeAd~l~~--------------~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 141 NWRIVIIDPADDMNR--------------NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred CceEEEEEchhhcCH--------------HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 357999999998752 345668888885 44466666777889999999998 88 589999999
Q ss_pred HHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAIC 134 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 134 (173)
.++-..+++........++ ..+..++..+.| +++.-.+++
T Consensus 202 ~~~~~~~L~~~~~~~~~~~-~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 202 DDELKKALSHLGSSQGSDG-EITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred HHHHHHHHHHhhcccCCCH-HHHHHHHHHcCC-CHHHHHHHH
Confidence 9999999987432211111 224556666665 333333333
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.001 Score=58.09 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=82.2
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|.+.. ...+.|+..|+. .....++|.+|+.+..|-+.|++ |+ ..++|.+++.+
T Consensus 123 KVvIIdea~~Ls~--------------~a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ 183 (614)
T PRK14971 123 KIYIIDEVHMLSQ--------------AAFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVA 183 (614)
T ss_pred EEEEEECcccCCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHH
Confidence 4999999998742 345678888885 33456666777778899999998 76 45999999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
+-...++..+....+. +.-.+..++..+. -+.+++.++++.....+ +.. ++.+++...+
T Consensus 184 ei~~~L~~ia~~egi~i~~~al~~La~~s~-gdlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 184 DIVNHLQYVASKEGITAEPEALNVIAQKAD-GGMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 9988888887766554 2223666777664 47777777776654332 111 5555554443
No 136
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.57 E-value=0.001 Score=55.36 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=86.2
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC----C-------CCCCeEEEEEeCCCC---------
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF----D-------QTVNVKVIMATNRAD--------- 70 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~-------~~~~v~vi~ttn~~~--------- 70 (173)
...++||||||+|.+...+.+...+.+-....+.+.||..|++- . .....++|.|+|-.-
T Consensus 171 ~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~ 250 (412)
T PRK05342 171 KAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL 250 (412)
T ss_pred HcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCc
Confidence 34689999999999987643322222221224566677777642 1 111345566655400
Q ss_pred -------------------------------------------CCCccccCCCCccceecCCCCCHHHHHHHHHH----H
Q 030674 71 -------------------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV----C 103 (173)
Q Consensus 71 -------------------------------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~----~ 103 (173)
.+.|+++. |++.++.|.+++.+...+|+.. .
T Consensus 251 ~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l 328 (412)
T PRK05342 251 EKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNAL 328 (412)
T ss_pred HHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHH
Confidence 02445554 9999999999999999999972 3
Q ss_pred Hc-------cCCCC---CcCCHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHhc-------CCccCHHHHH
Q 030674 104 TA-------KMNLS---DEVDLEDYVSR--PDKISAAEIAAICQEAGMHAVRKN-------RYVILPKDFE 155 (173)
Q Consensus 104 l~-------~~~~~---~~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~~~-------~~~i~~~d~~ 155 (173)
++ ..... ++--+..+++. ..++-.+-|..++++.......+- ...|+.+.+.
T Consensus 329 ~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~v~ 399 (412)
T PRK05342 329 VKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDVEKVVITKEVVE 399 (412)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHHhc
Confidence 32 22222 22235567764 567888899988888765555432 1246666654
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.47 E-value=0.0007 Score=52.93 Aligned_cols=126 Identities=17% Similarity=0.142 Sum_probs=76.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--------------CCCCCeEEEEEeCCC-----CCCCc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------------DQTVNVKVIMATNRA-----DTLDP 74 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------------~~~~~v~vi~ttn~~-----~~ld~ 74 (173)
+.+|+|||++.+-+ .+.+.|+..++.- ....+..+|+|+|.. ..+++
T Consensus 106 g~~lllDEi~r~~~--------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 106 GFTLVYDEFTRSKP--------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred CCEEEEcchhhCCH--------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 57999999997432 2333344444321 012356789999975 36799
Q ss_pred cccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcC--CHHHHhc------CCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 75 ALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEV--DLEDYVS------RPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 75 al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~--~~~~la~------~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
++.+ || ..++++.|+.++-.+|++.... ..+.. .+-.++. .....+.+..-.+++.+... ..+
T Consensus 172 aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~---~~~ 242 (262)
T TIGR02640 172 ALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQ---DIP 242 (262)
T ss_pred HHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHc---CCC
Confidence 9999 98 6799999999999999987652 22110 0111111 11234455554444444433 335
Q ss_pred CccCHHHHHHHHHhhC
Q 030674 147 YVILPKDFEKGYRTNV 162 (173)
Q Consensus 147 ~~i~~~d~~~al~~~~ 162 (173)
..++.+||.+....+.
T Consensus 243 ~~~~~~~~~~~~~~~~ 258 (262)
T TIGR02640 243 VDVDDEDFVDLCIDIL 258 (262)
T ss_pred CCCCcHHHHHHHHHHh
Confidence 5688899988776553
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.47 E-value=0.00024 Score=56.67 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=53.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|+|||+|.+... ..... +...++. ...++.+|++||.++.+++++++ ||. .+.++.|+
T Consensus 100 ~~~vliiDe~d~l~~~----------~~~~~---L~~~le~--~~~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~ 161 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA----------DAQRH---LRSFMEA--YSKNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPT 161 (316)
T ss_pred CCeEEEEECcccccCH----------HHHHH---HHHHHHh--cCCCceEEEEcCChhhchHHHHh--hce-EEEeCCCC
Confidence 4789999999976311 11222 3333443 23456788899999999999999 885 68999999
Q ss_pred HHHHHHHHHHHHc
Q 030674 93 RRQKRLVFQVCTA 105 (173)
Q Consensus 93 ~~~R~~il~~~l~ 105 (173)
.+++..+++.++.
T Consensus 162 ~~~~~~il~~~~~ 174 (316)
T PHA02544 162 KEEQIEMMKQMIV 174 (316)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888765443
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00095 Score=58.21 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=83.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+.. ...+.|+..|+. +....++|.+|+.+..|.+.+++ |. ..++|..++.
T Consensus 128 ~KVvIIdEad~Lt~--------------~a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~ 188 (620)
T PRK14954 128 YRVYIIDEVHMLST--------------AAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPL 188 (620)
T ss_pred CEEEEEeChhhcCH--------------HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCH
Confidence 35999999987752 235678888874 34456666667778999999887 65 5799999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-hcCCccCHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR-KNRYVILPKDFEKGY 158 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~-~~~~~i~~~d~~~al 158 (173)
++-...+...+...... +.-.+..++..+.| +.+++.+.++.....+.. .....|+.+++.+.+
T Consensus 189 ~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 189 DEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 98888888777654433 22346667777665 677777766655433311 123457777666654
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0011 Score=59.09 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=79.5
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--C-------CCCCeEEEEEeCCC---------
Q 030674 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRA--------- 69 (173)
Q Consensus 8 ~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~--------- 69 (173)
..+.+..+||+|||+|..-+ .+.+.|+..|+.- . .-+++++|+|||.-
T Consensus 552 ~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~ 617 (758)
T PRK11034 552 AVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_pred HHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhccc
Confidence 33445559999999997632 3566677666521 1 12468899999932
Q ss_pred ----------------CCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhcC--
Q 030674 70 ----------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVSR-- 121 (173)
Q Consensus 70 ----------------~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~-- 121 (173)
..+.|.++. |+|.+|.|++++.++..+|+..++... .+. ++--++.++..
T Consensus 618 g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~ 695 (758)
T PRK11034 618 GLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred CcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCC
Confidence 125566766 999999999999999999998776522 222 11224445543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q 030674 122 PDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 122 t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
..+|-.+.|..++++-....+..
T Consensus 696 ~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 696 DRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCCCCCchHHHHHHHHHHHHHHH
Confidence 35567788888888766554443
No 141
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0028 Score=49.94 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=97.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC----------------CCCCeEEEEEeCCCCCCCccccC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~al~r 78 (173)
-|+|||||+.+.+.- -..+.-.|+++. .-.+..+|++|.+...|..-|+.
T Consensus 105 DVLFIDEIHrl~~~v--------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 105 DVLFIDEIHRLSPAV--------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred CeEEEehhhhcChhH--------------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH
Confidence 699999999987421 122333344331 11358899999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 157 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 157 (173)
||+....+..=+.++-.+|+........+. ++-...++|.++.| ||+==-+++++..-.|...+...++.+-...|
T Consensus 171 --RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~a 247 (332)
T COG2255 171 --RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKA 247 (332)
T ss_pred --hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999887665554 33346788998887 56655567788877777777777888777777
Q ss_pred HHhhC
Q 030674 158 YRTNV 162 (173)
Q Consensus 158 l~~~~ 162 (173)
++...
T Consensus 248 L~~L~ 252 (332)
T COG2255 248 LKMLD 252 (332)
T ss_pred HHHhC
Confidence 76543
No 142
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.44 E-value=0.0012 Score=52.44 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC--CccccCCCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL--DPALLRPGR 81 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l--d~al~r~gr 81 (173)
.+....+...+-+|+|||++.++..+ .. .++.+-.++..|.+ .-+=+++.++|-.....+ |+-+-+ |
T Consensus 136 ~~~~llr~~~vrmLIIDE~H~lLaGs-------~~-~qr~~Ln~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~--R 204 (302)
T PF05621_consen 136 QVLRLLRRLGVRMLIIDEFHNLLAGS-------YR-KQREFLNALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS--R 204 (302)
T ss_pred HHHHHHHHcCCcEEEeechHHHhccc-------HH-HHHHHHHHHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh--c
Confidence 45566778899999999999987432 11 12333333333321 112256666665444433 455556 9
Q ss_pred ccceecCCCCC-HHHHHHHHHHHHccCCCC--CcCC----HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 030674 82 LDRKIEFPLPD-RRQKRLVFQVCTAKMNLS--DEVD----LEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 154 (173)
Q Consensus 82 f~~~i~~~~p~-~~~R~~il~~~l~~~~~~--~~~~----~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 154 (173)
|+. +.+|... .++-..++..+-...++. ..+. ...+-..|+|.+ ++|.+++..|+..|++.+...|+.+.+
T Consensus 205 F~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E~It~~~l 282 (302)
T PF05621_consen 205 FEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEERITREIL 282 (302)
T ss_pred cCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 965 5667665 455666777776666554 2222 234556677755 689999999999999999988998888
Q ss_pred HHHHHhhCCC
Q 030674 155 EKGYRTNVKK 164 (173)
Q Consensus 155 ~~al~~~~p~ 164 (173)
.. +.-+.|+
T Consensus 283 ~~-~~~~~ps 291 (302)
T PF05621_consen 283 DK-IDWVPPS 291 (302)
T ss_pred hh-CCCcChh
Confidence 55 3444444
No 143
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.40 E-value=0.0013 Score=50.25 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=71.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-----CC-----------CCeEEEEEeCCCCCCCccc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----QT-----------VNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~-----------~~v~vi~ttn~~~~ld~al 76 (173)
...||||||++.+-. .+-..|+..|++.. +. .+..+|++|+....|.+.|
T Consensus 101 ~~~ILFIDEIHRlnk--------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 101 EGDILFIDEIHRLNK--------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp TT-EEEECTCCC--H--------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred CCcEEEEechhhccH--------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 358999999998863 22334555565431 11 3588999999999999999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
+. ||.....+..=+.++-.+|++......... ++--..++|..+.| ||+---++++++
T Consensus 167 rd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 167 RD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp CT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred Hh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 99 999999999999999999998877665554 33346789998887 565544555443
No 144
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00034 Score=61.01 Aligned_cols=79 Identities=27% Similarity=0.336 Sum_probs=57.8
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------C----CCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F----DQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
.-+++|||+|-++..- ..++ .+.+|+.||- + -.-++|++|+|+|..+.||+.|+.
T Consensus 506 NPliLiDEvDKlG~g~--qGDP--------asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD-- 573 (906)
T KOG2004|consen 506 NPLILIDEVDKLGSGH--QGDP--------ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD-- 573 (906)
T ss_pred CceEEeehhhhhCCCC--CCCh--------HHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--
Confidence 3578899999998322 2221 1345555542 1 123579999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHc
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTA 105 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~ 105 (173)
|. .+|+++==..++..+|-+.||-
T Consensus 574 RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 574 RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hh-heeeccCccHHHHHHHHHHhhh
Confidence 87 4688887788999999998874
No 145
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.34 E-value=0.0021 Score=56.37 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=87.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCC-CCCCccccCCCCc
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRA-DTLDPALLRPGRL 82 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~-~~ld~al~r~grf 82 (173)
.+|||||++.+-. .+.+.|+..|+.= ....++.+|+|+|-. ..++++|.. ||
T Consensus 128 GiL~lDEi~~l~~--------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~ 191 (633)
T TIGR02442 128 GILYIDEVNLLDD--------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RF 191 (633)
T ss_pred CeEEeChhhhCCH--------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hc
Confidence 5999999998753 3445566655421 112358889988842 368899999 99
Q ss_pred cceecCCCCC-HHHHHHHHHHHHccCC-------------------------CCCcC-----CHHHHhcCC--CCC-CHH
Q 030674 83 DRKIEFPLPD-RRQKRLVFQVCTAKMN-------------------------LSDEV-----DLEDYVSRP--DKI-SAA 128 (173)
Q Consensus 83 ~~~i~~~~p~-~~~R~~il~~~l~~~~-------------------------~~~~~-----~~~~la~~t--~g~-s~~ 128 (173)
+..|.++.|. .++|.++++..+.... ..+.+ .+..++..+ .|. +.+
T Consensus 192 ~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~R 271 (633)
T TIGR02442 192 GLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHR 271 (633)
T ss_pred ceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999876 6888888875432100 00001 112222222 244 466
Q ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 129 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 129 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
-...+++-|...|.-.++..|+.+|+..|+.-+.+
T Consensus 272 a~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 272 ADIVMARAARALAALDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhh
Confidence 66667788888888889999999999999876653
No 146
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.33 E-value=0.0014 Score=54.42 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=81.8
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-----------CCCCeEEEEEeCCC-----------
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMATNRA----------- 69 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~ttn~~----------- 69 (173)
..|+||||||+|.+..++.+...+.+-....+.+.||..|++.. +..+.++|.|+|-.
T Consensus 180 a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~ 259 (413)
T TIGR00382 180 AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLE 259 (413)
T ss_pred cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChH
Confidence 45889999999999875433222221111245555666665431 12246777777751
Q ss_pred ----------------C-----------------------CCCccccCCCCccceecCCCCCHHHHHHHHHH----HHcc
Q 030674 70 ----------------D-----------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV----CTAK 106 (173)
Q Consensus 70 ----------------~-----------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~----~l~~ 106 (173)
+ .+.|+++. |++.++.|.+++.+...+|+.. ++++
T Consensus 260 ~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq 337 (413)
T TIGR00382 260 KIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQ 337 (413)
T ss_pred HHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 03455665 9999999999999999999865 2221
Q ss_pred C-------CCC---CcCCHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHh
Q 030674 107 M-------NLS---DEVDLEDYVSR--PDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 107 ~-------~~~---~~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
+ .+. ++--+..+|+. ..++-.+-|..++++........
T Consensus 338 ~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 338 YQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred HHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 1 111 12225567765 46788899999998877665544
No 147
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.30 E-value=0.0017 Score=52.24 Aligned_cols=113 Identities=10% Similarity=0.120 Sum_probs=71.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHh-----cc----CCCCCCCeEEEEEeCCCC------------C
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ-----MD----GFDQTVNVKVIMATNRAD------------T 71 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~-----l~----~~~~~~~v~vi~ttn~~~------------~ 71 (173)
.++++++||+|..-+ .....++.+|+. +. .+.......+|||.|..+ .
T Consensus 134 ~g~illlDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~ 202 (327)
T TIGR01650 134 HNVALCFDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ 202 (327)
T ss_pred CCeEEEechhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence 479999999997532 122333444442 11 112344688999999754 4
Q ss_pred CCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcC---CHHHHhc----------CCCCCCHHHHHHHHHHH
Q 030674 72 LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEV---DLEDYVS----------RPDKISAAEIAAICQEA 137 (173)
Q Consensus 72 ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~---~~~~la~----------~t~g~s~~di~~l~~~a 137 (173)
++.|.+. ||-.++.+++|+.++-.+|+.......... ... .+-++|. .+.|+|++.+......+
T Consensus 203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~ 280 (327)
T TIGR01650 203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENA 280 (327)
T ss_pred CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHH
Confidence 6889999 999999999999999999987664332200 000 0111222 24567999888887765
Q ss_pred H
Q 030674 138 G 138 (173)
Q Consensus 138 ~ 138 (173)
.
T Consensus 281 ~ 281 (327)
T TIGR01650 281 E 281 (327)
T ss_pred H
Confidence 4
No 148
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.30 E-value=0.0033 Score=56.01 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=81.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--C-------CCCCeEEEEEeCCCC------
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRAD------ 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~~------ 70 (173)
.+..+....+||+|||+|..-+ .+.+.|+..+++- . .-++.++|+|||...
T Consensus 546 ~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~ 611 (731)
T TIGR02639 546 TEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKP 611 (731)
T ss_pred HHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhc
Confidence 3444555568999999995532 3556666666632 1 123588999998632
Q ss_pred -------------------CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CC--C-CcCCHHHHhcC
Q 030674 71 -------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NL--S-DEVDLEDYVSR 121 (173)
Q Consensus 71 -------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~--~-~~~~~~~la~~ 121 (173)
.+.|.++. |+|.+|.|.+.+.++..+|++..+.+. .+ . ++-.++.++..
T Consensus 612 ~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 612 PIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred cCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHh
Confidence 14566666 999999999999999999999887632 11 1 11224456653
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHH
Q 030674 122 --PDKISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 122 --t~g~s~~di~~l~~~a~~~a~~ 143 (173)
...|-.+.|.+.++.....++.
T Consensus 690 ~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 690 GYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred CCCcccCchHHHHHHHHHhHHHHH
Confidence 4667888898888887655543
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0013 Score=53.88 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=59.0
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..|-|++|||+|.+-. ...+.|+..++. ...+.++|.+|++++.+.+.+++ |+ ..+.|++|
T Consensus 140 ~~~kVviIDead~m~~--------------~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l 200 (365)
T PRK07471 140 GGWRVVIVDTADEMNA--------------NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPL 200 (365)
T ss_pred CCCEEEEEechHhcCH--------------HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCC
Confidence 4578999999997642 456678888874 44567788899999999999988 76 56899999
Q ss_pred CHHHHHHHHHHHH
Q 030674 92 DRRQKRLVFQVCT 104 (173)
Q Consensus 92 ~~~~R~~il~~~l 104 (173)
+.++-.+++....
T Consensus 201 ~~~~i~~~L~~~~ 213 (365)
T PRK07471 201 APEDVIDALAAAG 213 (365)
T ss_pred CHHHHHHHHHHhc
Confidence 9999988887753
No 150
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.22 E-value=0.0006 Score=59.41 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=67.7
Q ss_pred CeEEEEEeCCC--CCCCccccCCCCcc---ceecCC--CCC-HHHHHHHHHHHHc---cCCCCCcCC---HHHHh----c
Q 030674 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LPD-RRQKRLVFQVCTA---KMNLSDEVD---LEDYV----S 120 (173)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~--~p~-~~~R~~il~~~l~---~~~~~~~~~---~~~la----~ 120 (173)
.+.+|+++|.. ..+++.++. ||+ ..++++ .|+ .+.|..+.+.... +....+.++ +..+. +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57788888863 689999999 999 666664 344 6666666554333 221112222 22222 1
Q ss_pred CC---C--CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 121 RP---D--KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 121 ~t---~--g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.+ . ..+.++|.++++.|...|..++...|+.+|+.+|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 11 1 246899999999998888777888999999999987554
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.0011 Score=45.65 Aligned_cols=68 Identities=41% Similarity=0.632 Sum_probs=45.8
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC----CCCeEEEEEeCCCC--CCCccccCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ----TVNVKVIMATNRAD--TLDPALLRPG 80 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~v~vi~ttn~~~--~ld~al~r~g 80 (173)
..+....|.+|++||++.+.. .....++..+..... ..++.+|+++|... .+++.+..
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~-- 141 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSR--------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD-- 141 (151)
T ss_pred HhhccCCCeEEEEeChhhhhH--------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--
Confidence 344455689999999997621 112234443433322 46788999999887 78888887
Q ss_pred CccceecCCC
Q 030674 81 RLDRKIEFPL 90 (173)
Q Consensus 81 rf~~~i~~~~ 90 (173)
||+.++.+++
T Consensus 142 r~~~~i~~~~ 151 (151)
T cd00009 142 RLDIRIVIPL 151 (151)
T ss_pred hhccEeecCC
Confidence 9998888763
No 152
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0011 Score=53.64 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=58.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
--|++||++|.+.. ...+.||+.|+ .+..+.++|.+|++++.|.|.+++ |.. .+.|++|+.
T Consensus 109 ~kV~iI~~ae~m~~--------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~ 169 (334)
T PRK07993 109 AKVVWLPDAALLTD--------------AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPE 169 (334)
T ss_pred ceEEEEcchHhhCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCH
Confidence 45999999998763 45678999999 577789999999999999999999 887 479999998
Q ss_pred HHHHHHHHH
Q 030674 94 RQKRLVFQV 102 (173)
Q Consensus 94 ~~R~~il~~ 102 (173)
++....+..
T Consensus 170 ~~~~~~L~~ 178 (334)
T PRK07993 170 QYALTWLSR 178 (334)
T ss_pred HHHHHHHHH
Confidence 887776653
No 153
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.19 E-value=0.0055 Score=49.84 Aligned_cols=131 Identities=19% Similarity=0.248 Sum_probs=92.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC------------CCCCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN------------RADTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn------------~~~~ld~al~r~gr 81 (173)
|.||||||++-|-. ..++.|-..|+ ..-.++++ .+|| .|+.+|..++. |
T Consensus 292 pGVLFIDEvHmLDI--------------E~FsFlnrAlE--se~aPIii-~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDI--------------ECFSFLNRALE--SELAPIII-LATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhH--------------HHHHHHHHHhh--cccCcEEE-EEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 99999999886531 33444444454 23334444 4444 47778888877 6
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
. ..|.-.+-+.++.++|++.-.....+. ++-.++.++.....-|.+--.+++.-|...|.+++...+..+|+.+|-+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 5 334444556888899998776655444 33357778888777788888888888999999999889999999999887
Q ss_pred hCCC
Q 030674 161 NVKK 164 (173)
Q Consensus 161 ~~p~ 164 (173)
|...
T Consensus 432 F~D~ 435 (450)
T COG1224 432 FLDV 435 (450)
T ss_pred HhhH
Confidence 7644
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.17 E-value=0.0011 Score=53.49 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=54.8
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC----------CCCCCCeEEEEEeC-----CCCCCCccccCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG----------FDQTVNVKVIMATN-----RADTLDPALLRP 79 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~vi~ttn-----~~~~ld~al~r~ 79 (173)
+|+++|||+..-+ .+.+.++..|+. +.-..+.++|+|+| ....+++++++
T Consensus 114 ~ill~DEInra~p--------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld- 178 (329)
T COG0714 114 VILLLDEINRAPP--------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD- 178 (329)
T ss_pred eEEEEeccccCCH--------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh-
Confidence 5999999995432 455666666664 22345789999999 77789999999
Q ss_pred CCccceecCCCC-CHHHHHHHHHHHH
Q 030674 80 GRLDRKIEFPLP-DRRQKRLVFQVCT 104 (173)
Q Consensus 80 grf~~~i~~~~p-~~~~R~~il~~~l 104 (173)
||-..++++.| ...+...+.....
T Consensus 179 -Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 179 -RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred -hEEEEEecCCCCchHHHHHHHHhCc
Confidence 99999999999 5555555555544
No 155
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.10 E-value=0.0027 Score=51.09 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=55.9
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++||++|.+.. ...+.||+.|+ .+..++++|.+|++++.|.|.|++ |+. .+.|++|+.+
T Consensus 115 kV~iI~~ae~m~~--------------~AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~ 175 (319)
T PRK08769 115 QVVIVDPADAINR--------------AACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAH 175 (319)
T ss_pred EEEEeccHhhhCH--------------HHHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHH
Confidence 5999999998852 45678999998 456678888889999999999999 874 5789999988
Q ss_pred HHHHHHHH
Q 030674 95 QKRLVFQV 102 (173)
Q Consensus 95 ~R~~il~~ 102 (173)
+-...+..
T Consensus 176 ~~~~~L~~ 183 (319)
T PRK08769 176 EALAWLLA 183 (319)
T ss_pred HHHHHHHH
Confidence 77666653
No 156
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0025 Score=54.21 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCC-CCeEEEEEeCCCCCCCcc-ccCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT-VNVKVIMATNRADTLDPA-LLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~vi~ttn~~~~ld~a-l~r~ 79 (173)
|+++|+-|++..-+||++|++|.|.--- .-....+..++..|+-.+....++ ++.+|++||+..+-|-.. +..
T Consensus 587 i~k~F~DAYkS~lsiivvDdiErLiD~v----pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~- 661 (744)
T KOG0741|consen 587 IKKIFEDAYKSPLSIIVVDDIERLLDYV----PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD- 661 (744)
T ss_pred HHHHHHHhhcCcceEEEEcchhhhhccc----ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH-
Confidence 6789999988777999999999988321 122234456677777777766544 468888888877655533 345
Q ss_pred CCccceecCCCCCH-HHHHHHHHH
Q 030674 80 GRLDRKIEFPLPDR-RQKRLVFQV 102 (173)
Q Consensus 80 grf~~~i~~~~p~~-~~R~~il~~ 102 (173)
+|+..|++|..+. ++-.+++..
T Consensus 662 -~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 662 -CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -hhhheeecCccCchHHHHHHHHH
Confidence 8999999998875 555555543
No 157
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.0018 Score=52.22 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=57.9
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
=|++||++|.+.. ...+.||+.++ .+..++++|.+|++++.|.|.+++ |.. .+.|++|+.+
T Consensus 109 KV~iI~~a~~m~~--------------~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~ 169 (325)
T PRK06871 109 KVVYIQGAERLTE--------------AAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQ 169 (325)
T ss_pred eEEEEechhhhCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHH
Confidence 5999999998763 45678999999 577788999999999999999998 864 5789999988
Q ss_pred HHHHHHHHH
Q 030674 95 QKRLVFQVC 103 (173)
Q Consensus 95 ~R~~il~~~ 103 (173)
+-.+.+...
T Consensus 170 ~~~~~L~~~ 178 (325)
T PRK06871 170 QALDWLQAQ 178 (325)
T ss_pred HHHHHHHHH
Confidence 887777653
No 158
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.07 E-value=0.00069 Score=50.93 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcC-CeEEEEccccccc-ccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC------C
Q 030674 2 VRDVFRLAKENA-PAIIFIDEVDAIA-TARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL------D 73 (173)
Q Consensus 2 l~~if~~A~~~~-P~il~ide~d~l~-~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l------d 73 (173)
+..+++...... ..||+|||++.+. ..+ .. ...+..+.+.++......++.+|.+++...-. .
T Consensus 106 l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~---~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 106 LERLLEKLKKKGKKVIIVIDEFQYLAIASE------ED---KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TT---HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TT
T ss_pred HHHHHHHHHhcCCcEEEEEecHHHHhhccc------ch---HHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhccc
Confidence 456666666554 4999999999998 211 11 24555666666654445566555555543222 1
Q ss_pred ccccCCCCccceecCCCCCHHHHHHHHHHHHccCC-C-CCcCCHHHHhcCCCCC
Q 030674 74 PALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN-L-SDEVDLEDYVSRPDKI 125 (173)
Q Consensus 74 ~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~-~-~~~~~~~~la~~t~g~ 125 (173)
..+. ||+.. +++++.+.++-.++++..+.... + .++.++..+...|.|.
T Consensus 177 ~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 177 SPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp STTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-
T ss_pred Cccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC
Confidence 2233 37877 99999999999999999876651 1 1445677777777775
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.05 E-value=0.017 Score=44.72 Aligned_cols=96 Identities=17% Similarity=0.295 Sum_probs=65.2
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--CCCCCeEEEEEeCCCCCCCccccC
Q 030674 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 2 l~~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
|-.+++..+.. .+-|||+||+- |. ..+. .-+. |-..|++- ....+|++.||||+-+-++.....
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLs--Fe------~~d~--~yk~---LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d 160 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLS--FE------EGDT--EYKA---LKSVLEGGLEARPDNVLIYATSNRRHLVPESFSD 160 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC--CC------CCcH--HHHH---HHHHhcCccccCCCcEEEEEecchhhccchhhhh
Confidence 34566666532 46799999854 31 1111 1233 33344432 345589999999998877765442
Q ss_pred -C--------------------CCccceecCCCCCHHHHHHHHHHHHccCCCC
Q 030674 79 -P--------------------GRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS 110 (173)
Q Consensus 79 -~--------------------grf~~~i~~~~p~~~~R~~il~~~l~~~~~~ 110 (173)
. .||+..|.|.+|+.++=.+|.++++....+.
T Consensus 161 ~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 161 REDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred ccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 2 2799999999999999999999999876554
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.01 E-value=0.0077 Score=54.64 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=79.1
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--C-------CCCCeEEEEEeCCCCC--------
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D-------QTVNVKVIMATNRADT-------- 71 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~-------~~~~v~vi~ttn~~~~-------- 71 (173)
.+....+||+|||+|..- . .+.+.|+..++.= . .-.+.+||+|||....
T Consensus 663 v~~~p~~vlllDeieka~-----------~---~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~ 728 (852)
T TIGR03346 663 VRRKPYSVVLFDEVEKAH-----------P---DVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGG 728 (852)
T ss_pred HHcCCCcEEEEeccccCC-----------H---HHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhccc
Confidence 344444799999999542 1 4555666666421 1 1245889999997321
Q ss_pred -----------------CCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhcCC--
Q 030674 72 -----------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVSRP-- 122 (173)
Q Consensus 72 -----------------ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~t-- 122 (173)
+.|.+.. |+|.++.|.+++.+....|+...+... .+. ++-.++.++...
T Consensus 729 ~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~ 806 (852)
T TIGR03346 729 DDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYD 806 (852)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCC
Confidence 3355665 999999999999999999998776521 111 112245566653
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q 030674 123 DKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~ 144 (173)
..+..+.|.+++++.....+..
T Consensus 807 ~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 807 PVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CCCCchhHHHHHHHHHHHHHHH
Confidence 3678899999999887665544
No 161
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.0022 Score=51.58 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=58.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
--|++||++|.+.. ...+.||+.++ .+..++++|.+|++++.|.|.+++ |.. .+.|++|+.
T Consensus 109 ~kV~iI~~ae~m~~--------------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~ 169 (319)
T PRK06090 109 YRLFVIEPADAMNE--------------SASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPST 169 (319)
T ss_pred ceEEEecchhhhCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCH
Confidence 36999999998752 45678999999 566789999999999999999999 875 689999998
Q ss_pred HHHHHHHHH
Q 030674 94 RQKRLVFQV 102 (173)
Q Consensus 94 ~~R~~il~~ 102 (173)
++..+.+..
T Consensus 170 ~~~~~~L~~ 178 (319)
T PRK06090 170 AQAMQWLKG 178 (319)
T ss_pred HHHHHHHHH
Confidence 887776653
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0018 Score=57.48 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
|+.+.+..+...+.||||||++.+.+..+.... .-...+++.-.| ....+-+|++|..-+ .=|+||
T Consensus 251 lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaL-------ARGeL~~IGATT~~EYRk~iEKD~AL 321 (786)
T COG0542 251 LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPAL-------ARGELRCIGATTLDEYRKYIEKDAAL 321 (786)
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHH-------hcCCeEEEEeccHHHHHHHhhhchHH
Confidence 567888888877999999999999976643221 111223333322 233566777776543 358999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHcc
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
-| ||.. |.+..|+.++-..|++.+-.+
T Consensus 322 ~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 322 ER--RFQK-VLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred Hh--cCce-eeCCCCCHHHHHHHHHHHHHH
Confidence 99 9965 889999999999999876543
No 163
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.86 E-value=0.01 Score=53.88 Aligned_cols=120 Identities=18% Similarity=0.276 Sum_probs=78.1
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--CC-------CCCeEEEEEeCCCC-------
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQ-------TVNVKVIMATNRAD------- 70 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~-------~~~v~vi~ttn~~~------- 70 (173)
+..+.+.++||+|||+|..- . .+.+.|+..++.- .. -.+.++|+|||...
T Consensus 662 ~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred HHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 44456667999999998422 1 4455566666521 11 14689999998521
Q ss_pred ----------------------CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC--------CCC---CcCCHHH
Q 030674 71 ----------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM--------NLS---DEVDLED 117 (173)
Q Consensus 71 ----------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~--------~~~---~~~~~~~ 117 (173)
.+.|+++. |++ +|.|.+++.++-.+|+...+... .+. ++--++.
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~ 804 (852)
T TIGR03345 728 ADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEH 804 (852)
T ss_pred cCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHH
Confidence 14466666 887 88999999999999998776542 221 2222455
Q ss_pred HhcCCC--CCCHHHHHHHHHHHHHHHHH
Q 030674 118 YVSRPD--KISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 118 la~~t~--g~s~~di~~l~~~a~~~a~~ 143 (173)
++..+. .|-.+.|.++++.-...++.
T Consensus 805 La~~g~~~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 805 IVARCTEVESGARNIDAILNQTLLPELS 832 (852)
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence 777653 36788898888876555444
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.74 E-value=0.0061 Score=51.13 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=47.1
Q ss_pred HHHHHHHHc--CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhcc--------------------CCCCCCCeE
Q 030674 4 DVFRLAKEN--APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD--------------------GFDQTVNVK 61 (173)
Q Consensus 4 ~if~~A~~~--~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~--------------------~~~~~~~v~ 61 (173)
++...|+.. .|++|+|||++.--.. +++..++..|+ .+.-..++.
T Consensus 261 ~~~~~A~~~p~~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~ 327 (459)
T PRK11331 261 NFCQQAKEQPEKKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVY 327 (459)
T ss_pred HHHHHHHhcccCCcEEEEehhhccCHH-------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeE
Confidence 345666543 4899999999964432 22222222222 233445799
Q ss_pred EEEEeCCCC----CCCccccCCCCccceecCCC
Q 030674 62 VIMATNRAD----TLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 62 vi~ttn~~~----~ld~al~r~grf~~~i~~~~ 90 (173)
+|||.|..+ .+|.|++| ||.. |++.+
T Consensus 328 IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 328 IIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred EEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 999999988 89999999 9965 55554
No 165
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0058 Score=53.57 Aligned_cols=141 Identities=22% Similarity=0.293 Sum_probs=85.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC---------C----CCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG---------F----DQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~----~~~~~v~vi~ttn~~~~l 72 (173)
..+|+... -+++|||+|-+...- .+.. .+.+|+-||- + -.=++|++|+|+|+.+.|
T Consensus 411 mkka~~~N-Pv~LLDEIDKm~ss~----rGDP------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tI 479 (782)
T COG0466 411 MKKAGVKN-PVFLLDEIDKMGSSF----RGDP------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTI 479 (782)
T ss_pred HHHhCCcC-CeEEeechhhccCCC----CCCh------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccC
Confidence 34555554 467899999987432 1111 1345555542 1 112479999999999999
Q ss_pred CccccCCCCccceecCCCCCHHHHHHHHHHHHc-----cCCCC-CcCC-----HHHH-hcCC--CCC--CHHHHHHHHHH
Q 030674 73 DPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTA-----KMNLS-DEVD-----LEDY-VSRP--DKI--SAAEIAAICQE 136 (173)
Q Consensus 73 d~al~r~grf~~~i~~~~p~~~~R~~il~~~l~-----~~~~~-~~~~-----~~~l-a~~t--~g~--s~~di~~l~~~ 136 (173)
|..|+. |. .+|+++-=+.++..+|-+.||- ...+. ..+. +..+ -.+| .|. --++|..+|+.
T Consensus 480 P~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK 556 (782)
T COG0466 480 PAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRK 556 (782)
T ss_pred ChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Confidence 999999 98 5689988899999999988773 22333 1121 2222 2222 222 13566667777
Q ss_pred HHHHHHHhcCC---ccCHHHHHHHHHh
Q 030674 137 AGMHAVRKNRY---VILPKDFEKGYRT 160 (173)
Q Consensus 137 a~~~a~~~~~~---~i~~~d~~~al~~ 160 (173)
++..-...... .++..++..=+..
T Consensus 557 ~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 557 AAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 66554443322 4677677665543
No 166
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.70 E-value=0.017 Score=47.26 Aligned_cols=138 Identities=22% Similarity=0.339 Sum_probs=88.3
Q ss_pred HHHHHHHHHHc-----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEE-eCCCC-CCCc
Q 030674 2 VRDVFRLAKEN-----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA-TNRAD-TLDP 74 (173)
Q Consensus 2 l~~if~~A~~~-----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t-tn~~~-~ld~ 74 (173)
+|++|+.|+.. ..+||||||++.+.... ...||-.++ +..|.+|++ |.+|. .|..
T Consensus 206 vR~ife~aq~~~~l~krkTilFiDEiHRFNksQ--------------QD~fLP~VE----~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 206 VRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ--------------QDTFLPHVE----NGDITLIGATTENPSFQLNA 267 (554)
T ss_pred HHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh--------------hhcccceec----cCceEEEecccCCCccchhH
Confidence 58999999853 47999999999876322 123444443 345667764 44554 7888
Q ss_pred cccCCCCccceecCCCCCHHHHHHHHHHHHccC--------CCCC------cCCHHHHhcCCCCCCHHHHHHHHHHH-HH
Q 030674 75 ALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM--------NLSD------EVDLEDYVSRPDKISAAEIAAICQEA-GM 139 (173)
Q Consensus 75 al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~--------~~~~------~~~~~~la~~t~g~s~~di~~l~~~a-~~ 139 (173)
+|++ |+ +++.+.......-..||.+..... .+.+ +.-++.++..|.|=+-+-|-.+ +.+ .+
T Consensus 268 aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L-ems~~m 343 (554)
T KOG2028|consen 268 ALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL-EMSLSM 343 (554)
T ss_pred HHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH-HHHHHH
Confidence 9998 65 467778888899999998754411 1111 1225678888888665555443 333 22
Q ss_pred HHHHhc---CCccCHHHHHHHHHhh
Q 030674 140 HAVRKN---RYVILPKDFEKGYRTN 161 (173)
Q Consensus 140 ~a~~~~---~~~i~~~d~~~al~~~ 161 (173)
.+.+.+ +..++.+|+.++|.+-
T Consensus 344 ~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 344 FCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHhhcCCcccceecHHHHHHHHhhc
Confidence 333333 3579999999888653
No 167
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.013 Score=46.62 Aligned_cols=93 Identities=14% Similarity=0.308 Sum_probs=62.1
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++||++|.+.. ...+.||+.++ .+..+.++|.+|++++.|-|.+++ |+ ..+.|+. +.+
T Consensus 106 kV~II~~ad~m~~--------------~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~ 165 (290)
T PRK07276 106 QVFIIKDADKMHV--------------NAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEA 165 (290)
T ss_pred EEEEeehhhhcCH--------------HHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHH
Confidence 6999999998763 45678999998 466678999999999999999999 87 4577765 444
Q ss_pred HHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAIC 134 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 134 (173)
+-.+++. ...... +...++....| +++....+.
T Consensus 166 ~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 166 YLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred HHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 4333332 323322 12233333345 676666665
No 168
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.65 E-value=0.033 Score=44.57 Aligned_cols=133 Identities=16% Similarity=0.249 Sum_probs=85.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEE---------eC--CCCCCCccccCCCCc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA---------TN--RADTLDPALLRPGRL 82 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t---------tn--~~~~ld~al~r~grf 82 (173)
|.++||||++-|-. ..++-|-..++ ..-.++++++| || +|+.+|-.++. |.
T Consensus 289 pGVLFIDEvHMLDI--------------EcFsFlNrAlE--~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDI--------------ECFSFLNRALE--NDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred cceEEEeeehhhhh--------------HHHHHHHHHhh--hccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 99999999886531 12222222343 22334444443 22 36778877776 64
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
..|.-.+-+.++-++||+.-....... +.-.++.+......-|.+---.++..|...+.++....+..+|+..+.+-|
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLF 429 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHH
Confidence 234445556888889998776654443 222244444444555666667788888889999988899999999999887
Q ss_pred CCCC
Q 030674 162 VKKP 165 (173)
Q Consensus 162 ~p~~ 165 (173)
....
T Consensus 430 lD~~ 433 (454)
T KOG2680|consen 430 LDEK 433 (454)
T ss_pred hhhh
Confidence 7554
No 169
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.007 Score=48.44 Aligned_cols=89 Identities=9% Similarity=0.141 Sum_probs=62.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++||++|.+.. ...+.|+..+++ +..++++|.+|++++.+.+.+++ |. ..++|++|+.
T Consensus 94 ~kv~iI~~ad~m~~--------------~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~ 154 (313)
T PRK05564 94 KKVIIIYNSEKMTE--------------QAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSK 154 (313)
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCH
Confidence 35999999987642 345688888984 55567777777889999999998 77 4899999999
Q ss_pred HHHHHHHHHHHccCCCCCcCCHHHHhcCCCC
Q 030674 94 RQKRLVFQVCTAKMNLSDEVDLEDYVSRPDK 124 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g 124 (173)
++-...++..+.. .+ ...+..++..+.|
T Consensus 155 ~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 155 EEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred HHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 8887777654432 22 1224445555554
No 170
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.0052 Score=49.65 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=54.4
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|||+|.+.. ...+.|++.|+. +..++++|.+|++++.|.+.+++ |. ..++|++|+.
T Consensus 111 ~kvviI~~a~~~~~--------------~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~ 171 (329)
T PRK08058 111 KKVYIIEHADKMTA--------------SAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPP 171 (329)
T ss_pred ceEEEeehHhhhCH--------------HHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCH
Confidence 35999999987652 355789999984 55677788889899999999998 76 5689999998
Q ss_pred HHHHHHHH
Q 030674 94 RQKRLVFQ 101 (173)
Q Consensus 94 ~~R~~il~ 101 (173)
++-...++
T Consensus 172 ~~~~~~L~ 179 (329)
T PRK08058 172 ESLIQRLQ 179 (329)
T ss_pred HHHHHHHH
Confidence 87766664
No 171
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.0066 Score=46.93 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++|+++|.+.. ...+.+|..++ .+..++++|.+|++++.|.+.+++ |+ ..+.++.|+.
T Consensus 90 ~KViII~~ae~mt~--------------~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~ 150 (263)
T PRK06581 90 YKVAIIYSAELMNL--------------NAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSSIL 150 (263)
T ss_pred cEEEEEechHHhCH--------------HHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCH
Confidence 45999999998763 45678999998 466788888888999999999998 86 4588999998
Q ss_pred HHHHHHHHHHHccCC
Q 030674 94 RQKRLVFQVCTAKMN 108 (173)
Q Consensus 94 ~~R~~il~~~l~~~~ 108 (173)
..-.+.+..++....
T Consensus 151 ~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 151 HAYNELYSQFIQPIA 165 (263)
T ss_pred HHHHHHHHHhccccc
Confidence 777777777765543
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.54 E-value=0.0039 Score=45.21 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=43.4
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (173)
.=|++|||+|.+.. ...+.|+..|+ .+..++.+|.+|++++.|.+.+++ |.. .+.|++
T Consensus 103 ~KviiI~~ad~l~~--------------~a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 103 YKVIIIDEADKLTE--------------EAQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp SEEEEEETGGGS-H--------------HHHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred ceEEEeehHhhhhH--------------HHHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 46999999998763 56678999998 566789999999999999999998 863 355544
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.021 Score=45.91 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=68.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++||++|.+.. ...+.|+..|+... +.++|.+|++++.|-+.+++ |. ..+.|++|+.
T Consensus 125 ~kVvII~~ae~m~~--------------~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~ 184 (314)
T PRK07399 125 RKVVVIEDAETMNE--------------AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSD 184 (314)
T ss_pred ceEEEEEchhhcCH--------------HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCH
Confidence 46999999987642 45668888888643 34567777899999999998 86 6799999999
Q ss_pred HHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQ 135 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 135 (173)
++-.++++....... .+.+...++..+.| +++...++++
T Consensus 185 ~~~~~~L~~~~~~~~--~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 185 EQLEQVLKRLGDEEI--LNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHHHHHHhhcccc--chhHHHHHHHHcCC-CHHHHHHHHH
Confidence 999888886532211 11124566666655 4444444443
No 174
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.51 E-value=0.057 Score=42.01 Aligned_cols=128 Identities=17% Similarity=0.191 Sum_probs=86.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCC------CCccce
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP------GRLDRK 85 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~------grf~~~ 85 (173)
..|.++++||++.+.... ...+.-|.+.-++....-+|+.|+-.. |.+.++.| -|++..
T Consensus 130 ~r~v~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir 194 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIR 194 (269)
T ss_pred CCCeEEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEE
Confidence 347999999999887421 122222333322222222366666442 33322211 278888
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCC----CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHH
Q 030674 86 IEFPLPDRRQKRLVFQVCTAKMNLS----DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 155 (173)
Q Consensus 86 i~~~~p~~~~R~~il~~~l~~~~~~----~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~ 155 (173)
|++++.+.++-..++++.++..... ++-.+..+...+.| .|+-|-+++..|...+...+...++.....
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999999999999999876444 23346677788888 899999999999999999998888776543
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.49 E-value=0.026 Score=51.08 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=79.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCCCCC----
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRADT---- 71 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~~---- 71 (173)
+.+..+.+..+||+|||+|..-+ .+.+.|+..++.-. ..++.++|+|||....
T Consensus 603 l~~~~~~~p~~VvllDeieka~~--------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~ 668 (821)
T CHL00095 603 LTEAVRKKPYTVVLFDEIEKAHP--------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET 668 (821)
T ss_pred HHHHHHhCCCeEEEECChhhCCH--------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence 34455555448999999996431 45666777776311 1246899999986321
Q ss_pred ---------------------------------CCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC-
Q 030674 72 ---------------------------------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS- 110 (173)
Q Consensus 72 ---------------------------------ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~- 110 (173)
+.|.++. |+|.+|.|.+++.++-.+|++..+.+. .+.
T Consensus 669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l 746 (821)
T CHL00095 669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQL 746 (821)
T ss_pred hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 1234566 899999999999999999998777532 111
Q ss_pred --CcCCHHHHhcC--CCCCCHHHHHHHHHHHHHHHHH
Q 030674 111 --DEVDLEDYVSR--PDKISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 111 --~~~~~~~la~~--t~g~s~~di~~l~~~a~~~a~~ 143 (173)
++-.++.++.. ...|-.+.|..++++-....+.
T Consensus 747 ~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 747 EVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred EECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHH
Confidence 11124456664 2456678888887776544443
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.48 E-value=0.053 Score=46.38 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=83.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCCC------------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRAD------------ 70 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~~------------ 70 (173)
-.++|+||++.+-. .+...+++.|+.= ....++.+|+|+|-..
T Consensus 295 gGvLfLDEi~e~~~--------------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 295 NGVLFLDELPEFER--------------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred CCEEecCCchhCCH--------------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 47999999986431 3445555555321 1123689999998642
Q ss_pred ---------CCCccccCCCCccceecCCCCCHH----------HHHHHHHH------HH-cc-CCCCCcCC---H-----
Q 030674 71 ---------TLDPALLRPGRLDRKIEFPLPDRR----------QKRLVFQV------CT-AK-MNLSDEVD---L----- 115 (173)
Q Consensus 71 ---------~ld~al~r~grf~~~i~~~~p~~~----------~R~~il~~------~l-~~-~~~~~~~~---~----- 115 (173)
.++..++. |||..+.++.|+.+ .+..+-+. .. .+ ......+. +
T Consensus 361 ~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~ 438 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCK 438 (506)
T ss_pred HHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhC
Confidence 46778888 99999999988532 11112111 10 00 00010000 1
Q ss_pred --------HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 116 --------EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 116 --------~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
-+-+...-|+|++-...+++-|...|.-.++..++.+|+.+|+..
T Consensus 439 l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 439 LESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 111223358999999999999999999999999999999999964
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.47 E-value=0.0027 Score=43.16 Aligned_cols=80 Identities=30% Similarity=0.417 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~al~r~g 80 (173)
++.++..|+...|.+|++||++.+....... ..................+..+|+++|. ....+..+.+
T Consensus 67 ~~~~~~~~~~~~~~viiiDei~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-- 136 (148)
T smart00382 67 LRLALALARKLKPDVLILDEITSLLDAEQEA--------LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-- 136 (148)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHH--------HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--
Confidence 3567888888778999999999887533100 0000000001111133446778888886 4555555655
Q ss_pred CccceecCCCC
Q 030674 81 RLDRKIEFPLP 91 (173)
Q Consensus 81 rf~~~i~~~~p 91 (173)
|++..+.++.+
T Consensus 137 ~~~~~~~~~~~ 147 (148)
T smart00382 137 RFDRRIVLLLI 147 (148)
T ss_pred ccceEEEecCC
Confidence 88888887654
No 178
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.46 E-value=0.025 Score=49.24 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=88.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCC---CCCCccccCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRA---DTLDPALLRP 79 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (173)
..|||+||+..+-. ++++.|+..|+.= ....+.++|+|-|.. ..|++.++.
T Consensus 94 ~GvL~lDe~n~~~~--------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD- 158 (584)
T PRK13406 94 GGVLVLAMAERLEP--------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD- 158 (584)
T ss_pred CCEEEecCcccCCH--------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh-
Confidence 36999999987642 6777888877631 112357788863322 358999999
Q ss_pred CCccceecCCCCCHHHHH-------HHH--HHHHccCCCCCcCCHHHHhcCC--CCC-CHHHHHHHHHHHHHHHHHhcCC
Q 030674 80 GRLDRKIEFPLPDRRQKR-------LVF--QVCTAKMNLSDEVDLEDYVSRP--DKI-SAAEIAAICQEAGMHAVRKNRY 147 (173)
Q Consensus 80 grf~~~i~~~~p~~~~R~-------~il--~~~l~~~~~~~~~~~~~la~~t--~g~-s~~di~~l~~~a~~~a~~~~~~ 147 (173)
||+..+.++.|...+-. .+. +..+.+..++ +..+..++..+ -|. |.+---.+++-|...|.-.++.
T Consensus 159 -Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~ 236 (584)
T PRK13406 159 -RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRT 236 (584)
T ss_pred -heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCC
Confidence 99999999988854321 222 2222222222 11233333222 466 8888888889999999999999
Q ss_pred ccCHHHHHHHHHhhC
Q 030674 148 VILPKDFEKGYRTNV 162 (173)
Q Consensus 148 ~i~~~d~~~al~~~~ 162 (173)
.|+.+|+.+|+.-+.
T Consensus 237 ~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 237 AVEEEDLALAARLVL 251 (584)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999996654
No 179
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.37 E-value=0.051 Score=46.16 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=82.2
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--------CCCCeEEEEEeCCCCCCCc------cccCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMATNRADTLDP------ALLRPG 80 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~ttn~~~~ld~------al~r~g 80 (173)
.+||+||+.... ....+.|+..|+.=. .-...+++++|| .+|. ++..
T Consensus 109 ~lLfLDEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN---~LPE~g~~leAL~D-- 169 (498)
T PRK13531 109 EIVFLDEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN---ELPEADSSLEALYD-- 169 (498)
T ss_pred cEEeecccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC---CCcccCCchHHhHh--
Confidence 389999996432 255667777773211 111245555556 4554 8888
Q ss_pred CccceecCCCCC-HHHHHHHHHHHHcc--CCCC--CcCC-----------------------HHHHhc---CC---CCCC
Q 030674 81 RLDRKIEFPLPD-RRQKRLVFQVCTAK--MNLS--DEVD-----------------------LEDYVS---RP---DKIS 126 (173)
Q Consensus 81 rf~~~i~~~~p~-~~~R~~il~~~l~~--~~~~--~~~~-----------------------~~~la~---~t---~g~s 126 (173)
||-..+.+|+|+ .++-.+++...... .... +-+. +-.+.. .+ ...|
T Consensus 170 RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~S 249 (498)
T PRK13531 170 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVS 249 (498)
T ss_pred hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcC
Confidence 998899999997 56657777653221 1110 0011 123333 12 2379
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
++--..++.-+...|+-.++..++.+|+. .+.....
T Consensus 250 pR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 250 DRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 99999999999999999999999999998 5555443
No 180
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=96.34 E-value=0.08 Score=42.31 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=85.7
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC-------------CCCCCCccccC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-------------RADTLDPALLR 78 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-------------~~~~ld~al~r 78 (173)
.-|.++||||++-|- ...+..+-..++ ++-.+++++| || .|..+|+.++.
T Consensus 295 lvPGVLFIDEVhMLD--------------iEcFTyL~kalE--S~iaPivifA-sNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLD--------------IECFTYLHKALE--SPIAPIVIFA-SNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhh--------------hHHHHHHHHHhc--CCCCceEEEe-cCCcceeecCCcCCCCCCCCCHHHhh
Confidence 349999999988653 145556666666 2333454444 33 35677777776
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 157 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 157 (173)
|+-..=.++++ .++-++|++.-.+...+. .+-.+..++.....-|.+--..++.-|...|-..++..++.+|++++
T Consensus 358 --Rl~Iirt~~y~-~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLLIIRTLPYD-EEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --heeEEeeccCC-HHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 65443344454 455556666555544444 33456678877777777777778777878887778888999999888
Q ss_pred HHhhCC
Q 030674 158 YRTNVK 163 (173)
Q Consensus 158 l~~~~p 163 (173)
-+-|..
T Consensus 435 ~~Lf~D 440 (456)
T KOG1942|consen 435 TELFLD 440 (456)
T ss_pred HHHHHh
Confidence 766543
No 181
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.30 E-value=0.081 Score=45.25 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=81.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCCCeEEEEEeCCC-----C-------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTVNVKVIMATNRA-----D------- 70 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~v~vi~ttn~~-----~------- 70 (173)
..+|||||++.+-. .+...|+..|+.- ....++.+|+++|.- .
T Consensus 296 ~GvLfLDEi~e~~~--------------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 296 NGVLFLDELPEFKR--------------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCeEecCChhhCCH--------------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 47999999997542 3334444444321 112368899999852 1
Q ss_pred -----------CCCccccCCCCccceecCCCCCHHH-------------HHHHHHH--HH----ccC---CCCCcCC---
Q 030674 71 -----------TLDPALLRPGRLDRKIEFPLPDRRQ-------------KRLVFQV--CT----AKM---NLSDEVD--- 114 (173)
Q Consensus 71 -----------~ld~al~r~grf~~~i~~~~p~~~~-------------R~~il~~--~l----~~~---~~~~~~~--- 114 (173)
.+...|+. |||..+.++.++.++ |..+.+. .. ... .....+.
T Consensus 362 c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~ 439 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDE 439 (499)
T ss_pred CCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHH
Confidence 47778888 999999999775431 2222211 11 111 1111111
Q ss_pred -------------HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 115 -------------LEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 115 -------------~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
+-+-+....++|.+-...+++-|...|--.+...++.+|+.+|+.
T Consensus 440 l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 440 IEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 111122234689999999999999999999999999999999985
No 182
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.25 E-value=0.013 Score=46.75 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=62.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-|++|||+|++.. ..-+.|...|+. ....+.+|..||+++.|+.-+.+ |... +.|++...+
T Consensus 131 KiiIlDEcdsmts--------------daq~aLrr~mE~--~s~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~ 191 (346)
T KOG0989|consen 131 KIIILDECDSMTS--------------DAQAALRRTMED--FSRTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDE 191 (346)
T ss_pred eEEEEechhhhhH--------------HHHHHHHHHHhc--cccceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchH
Confidence 6999999998873 233456666774 34467788889999999999998 8754 677777776
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCC
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDK 124 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 124 (173)
....-|+.......++ ++-.++.++..++|
T Consensus 192 ~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 6666666665554444 22235556664443
No 183
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.18 E-value=0.0076 Score=50.21 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=60.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--------CCCCCeEEEEEe----CCCCCCCccccCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMAT----NRADTLDPALLRPG 80 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~tt----n~~~~ld~al~r~g 80 (173)
+-.||||||+|-++...++. +.+-...-+...||..+++- -.+++|++|++- ..|++|=|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG-- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 46899999999999765321 22222234666788888763 124578888754 346677778876
Q ss_pred CccceecCCCCCHHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVF 100 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il 100 (173)
||-..+++.+++.+.-..||
T Consensus 325 R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred ccceEEECCCCCHHHHHHHh
Confidence 99999999999999988887
No 184
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.02 E-value=0.079 Score=48.27 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=73.4
Q ss_pred cCC-eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC--CC-------CCCCeEEEEEeCCCC-----------
Q 030674 12 NAP-AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG--FD-------QTVNVKVIMATNRAD----------- 70 (173)
Q Consensus 12 ~~P-~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~--~~-------~~~~v~vi~ttn~~~----------- 70 (173)
..| ++|+|||+|.+-+ .+.+.|+..++. +. ...+.++|+|||...
T Consensus 668 ~~p~~vLllDEieka~~--------------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~ 733 (857)
T PRK10865 668 RRPYSVILLDEVEKAHP--------------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELD 733 (857)
T ss_pred hCCCCeEEEeehhhCCH--------------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccc
Confidence 345 8999999985431 344555555542 11 123467888998731
Q ss_pred --------------CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhcCC--CC
Q 030674 71 --------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVSRP--DK 124 (173)
Q Consensus 71 --------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~t--~g 124 (173)
.+.|+++. |+|.++.|.+++.+....|++.++... ... ++--++.++... ..
T Consensus 734 ~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~ 811 (857)
T PRK10865 734 YAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPV 811 (857)
T ss_pred hHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCcc
Confidence 24467777 999999999999999999998877542 111 111244455532 23
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 030674 125 ISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~ 143 (173)
|-.+.|.+++++-....+.
T Consensus 812 ~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 812 YGARPLKRAIQQQIENPLA 830 (857)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 4567888888877655443
No 185
>PF05729 NACHT: NACHT domain
Probab=95.94 E-value=0.036 Score=39.25 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=48.0
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC--CCCCCccccCCCCcccee
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR--ADTLDPALLRPGRLDRKI 86 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~--~~~ld~al~r~grf~~~i 86 (173)
+....+.+|+||.+|.+...... .........+..++.. .+.+ ++-++.|++. ...+...+..+ ..+
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~--~~~~--~~~liit~r~~~~~~~~~~~~~~----~~~ 145 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ--ALPP--GVKLIITSRPRAFPDLRRRLKQA----QIL 145 (166)
T ss_pred HHcCCceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh--ccCC--CCeEEEEEcCChHHHHHHhcCCC----cEE
Confidence 34456789999999999853311 1111112223333322 1122 3334444432 22233333331 568
Q ss_pred cCCCCCHHHHHHHHHHHHcc
Q 030674 87 EFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~ 106 (173)
++++.+.+++.++++.+++.
T Consensus 146 ~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred EECCCCHHHHHHHHHHHhhc
Confidence 99999999999999998864
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.84 E-value=0.014 Score=48.66 Aligned_cols=84 Identities=27% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--------CCCCCeEEEEEeC----CCCCCCccccCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMATN----RADTLDPALLRPG 80 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~ttn----~~~~ld~al~r~g 80 (173)
+-.||||||+|-++.+..+. +.+-...-+...||..+++- -.+.+|++|++-. .|++|=|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~--~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G-- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESS--GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG-- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCC--CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--
Confidence 46899999999999655221 11111234666788888763 1245788888654 46666677765
Q ss_pred CccceecCCCCCHHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVF 100 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il 100 (173)
||-..+++.+++.+.-..||
T Consensus 323 R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred ccceEEECCCCCHHHHHHHh
Confidence 99999999999999988887
No 187
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.019 Score=46.39 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=58.4
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+-+.+... ..-|++||++|.+-. ...+.+++.++... .++.+|.+|++++.+.+.++
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL--------------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH--------------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 45555555432 235889999997753 34456777777543 35667779999999999998
Q ss_pred CCCCccceecCCCCCHHHHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQV 102 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~ 102 (173)
+ |+ ..+.|++|+.++-.+.+..
T Consensus 162 S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 8 76 5688999998887766643
No 188
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=95.75 E-value=0.078 Score=43.98 Aligned_cols=76 Identities=21% Similarity=0.372 Sum_probs=55.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhcc---------CCC--CCCCeEEEEEeCC-CCCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD---------GFD--QTVNVKVIMATNR-ADTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~---------~~~--~~~~v~vi~ttn~-~~~ld~al~r~gr 81 (173)
..|+|+||+-.|- .++...||+.+. ++. ...++++|+|.|- -..|=+-|+. |
T Consensus 145 RGIlYvDEvnlL~--------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--R 208 (423)
T COG1239 145 RGILYVDEVNLLD--------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--R 208 (423)
T ss_pred CCEEEEecccccc--------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--h
Confidence 4799999998664 256666666553 232 2336899999985 3467788888 9
Q ss_pred ccceecCCCCC-HHHHHHHHHHHHc
Q 030674 82 LDRKIEFPLPD-RRQKRLVFQVCTA 105 (173)
Q Consensus 82 f~~~i~~~~p~-~~~R~~il~~~l~ 105 (173)
|+..|.+..|. .++|.++.+.-+.
T Consensus 209 fg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 209 FGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred hcceeeccCCCCHHHHHHHHHHHHH
Confidence 99999998777 8999999876554
No 189
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.012 Score=51.57 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=63.5
Q ss_pred CCCccccCCCCccceecC--CCC-CHHHHHHHHHHHHccCCCC---CcCC---HHH----HhcCC-----CCCCHHHHHH
Q 030674 71 TLDPALLRPGRLDRKIEF--PLP-DRRQKRLVFQVCTAKMNLS---DEVD---LED----YVSRP-----DKISAAEIAA 132 (173)
Q Consensus 71 ~ld~al~r~grf~~~i~~--~~p-~~~~R~~il~~~l~~~~~~---~~~~---~~~----la~~t-----~g~s~~di~~ 132 (173)
.+++.+.. -|+...++ ++| +.+.|.++|+.+.+....+ +..+ +.. ..+.+ --.+++||.+
T Consensus 293 ~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 293 EPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred ccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 44444444 46655555 466 5899999999888754333 1122 222 22222 1268999999
Q ss_pred HHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 133 ICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 133 l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
+++.|...|...++..++.+|+++|++...+.
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKRELR 402 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhhhH
Confidence 99999999999999999999999999886554
No 190
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.71 E-value=0.052 Score=43.26 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=50.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCC---------C--
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP---------G-- 80 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~---------g-- 80 (173)
..|-||+|||+|.+-+. .+..++..+..+-...++.+|.+.+ ++.+-.++... |
T Consensus 171 ~~~iViiIDdLDR~~~~--------------~i~~~l~~ik~~~~~~~i~~Il~~D-~~~l~~ai~~~~~~~~~~~~~~~ 235 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPE--------------EIVELLEAIKLLLDFPNIIFILAFD-PEILEKAIEKNYGEGFDEIDGRE 235 (325)
T ss_pred CceEEEEEcchhcCCcH--------------HHHHHHHHHHHhcCCCCeEEEEEec-HHHHHHHHHhhcCcccccccHHH
Confidence 45889999999987432 1223344444333446777777664 33333333221 1
Q ss_pred ----CccceecCCCCCHHHHHHHHHHHHcc
Q 030674 81 ----RLDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 81 ----rf~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
.|+..+.+|+|+..+...++...+..
T Consensus 236 yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 236 YLEKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 37888999999999888888777544
No 191
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=95.66 E-value=0.044 Score=41.15 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcC-CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~-P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+|.+.+.+.-.+ ..-++|+++|.+.. ...+.+|..++ .+..++++|..|++++.+.|.+++
T Consensus 42 iReii~~~~~~~~~~k~iI~~a~~l~~--------------~A~NaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~S-- 103 (206)
T PRK08485 42 AKEVIAEAYIAESEEKIIVIAAPSYGI--------------EAQNALLKILE--EPPKNICFIIVAKSKNLLLPTIRS-- 103 (206)
T ss_pred HHHHHHHHhhCCCCcEEEEEchHhhCH--------------HHHHHHHHHhc--CCCCCeEEEEEeCChHhCchHHHh--
Confidence 355555554321 23345677776652 45678999998 466688888888899999999998
Q ss_pred Cccc------------eecCCCCCHHHHHHHHHH
Q 030674 81 RLDR------------KIEFPLPDRRQKRLVFQV 102 (173)
Q Consensus 81 rf~~------------~i~~~~p~~~~R~~il~~ 102 (173)
|+.. .+.+...+.++-...++.
T Consensus 104 Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 104 RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred hheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 7653 477888888888888887
No 192
>PHA02244 ATPase-like protein
Probab=95.63 E-value=0.098 Score=43.03 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=44.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHH-----hccCC-CCCCCeEEEEEeCCC-----------CCCCcc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLN-----QMDGF-DQTVNVKVIMATNRA-----------DTLDPA 75 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~-----~l~~~-~~~~~v~vi~ttn~~-----------~~ld~a 75 (173)
...+++|||++.+-+. ....+..++. ..++. ....++.+|+|+|.+ ..+++|
T Consensus 180 ~GgvLiLDEId~a~p~-----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred cCCEEEEeCcCcCCHH-----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 4689999999976421 1122222322 11111 234578999999973 688999
Q ss_pred ccCCCCccceecCCCCCH
Q 030674 76 LLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~ 93 (173)
++. ||- .|++..|+.
T Consensus 249 llD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 249 TLD--RFA-PIEFDYDEK 263 (383)
T ss_pred HHh--hcE-EeeCCCCcH
Confidence 999 995 699999984
No 193
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.038 Score=44.86 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=60.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--------CCCCeEEEEEe----CCCCCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMAT----NRADTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~tt----n~~~~ld~al~r~gr 81 (173)
-.||||||||-++.+.+.....-+. .-+...+|-.+++-. .++++++||+- ..|.+|=|.|.. |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSR--EGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSR--EGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcch--hhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 4899999999999766422211111 345567777777541 24468999864 457777778865 9
Q ss_pred ccceecCCCCCHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVF 100 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il 100 (173)
|=..+++.+.+.+.-.+||
T Consensus 327 fPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 327 FPIRVELDALTKEDFERIL 345 (444)
T ss_pred CceEEEcccCCHHHHHHHH
Confidence 9999999999999988887
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.38 E-value=0.28 Score=38.10 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=63.2
Q ss_pred HHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-C-CCCCCeEEEEEeCCCCCCCcccc-CC
Q 030674 4 DVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-F-DQTVNVKVIMATNRADTLDPALL-RP 79 (173)
Q Consensus 4 ~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-~~~~~v~vi~ttn~~~~ld~al~-r~ 79 (173)
.+++..+.. .+-|||.||+-- +.+. ..-+.++.+ |++ + ....+|++-||+|+-+.|+.... ++
T Consensus 129 ~l~~~Lr~~~~kFIlFcDDLSF--------e~gd--~~yK~LKs~---LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 129 DLVELLRARPEKFILFCDDLSF--------EEGD--DAYKALKSA---LEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred HHHHHHhcCCceEEEEecCCCC--------CCCc--hHHHHHHHH---hcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 455555543 357889888641 1222 122444433 343 3 33457999999999988884332 11
Q ss_pred -------------------CCccceecCCCCCHHHHHHHHHHHHccCCCC
Q 030674 80 -------------------GRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS 110 (173)
Q Consensus 80 -------------------grf~~~i~~~~p~~~~R~~il~~~l~~~~~~ 110 (173)
.||+.-+.|.+|+.++=..+..+|.+...++
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 2899999999999999999999999887665
No 195
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=95.36 E-value=0.47 Score=43.30 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.|++.|+.+++-|-..|..+-+..|+.+|+..|++-+.
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVK 805 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHH
Confidence 68999999999999999888888999999999998765
No 196
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.28 E-value=0.016 Score=40.39 Aligned_cols=54 Identities=30% Similarity=0.519 Sum_probs=35.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----------CCCC------CeEEEEEeCCCC----C
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----------DQTV------NVKVIMATNRAD----T 71 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~------~v~vi~ttn~~~----~ 71 (173)
.+++++|||++..- ..++..++..+++- .... +..+|+|+|..+ .
T Consensus 65 ~~~il~lDEin~a~--------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~ 130 (139)
T PF07728_consen 65 KGGILVLDEINRAP--------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKE 130 (139)
T ss_dssp EEEEEEESSCGG----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTT
T ss_pred ceeEEEECCcccCC--------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCc
Confidence 47999999999532 13444455544421 0111 389999999998 9
Q ss_pred CCccccCCCCc
Q 030674 72 LDPALLRPGRL 82 (173)
Q Consensus 72 ld~al~r~grf 82 (173)
+++++++ ||
T Consensus 131 l~~al~~--Rf 139 (139)
T PF07728_consen 131 LSPALLD--RF 139 (139)
T ss_dssp TCHHHHT--T-
T ss_pred CCHHHHh--hC
Confidence 9999999 87
No 197
>PF14516 AAA_35: AAA-like domain
Probab=94.96 E-value=0.25 Score=39.95 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=56.1
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC---CC----CCC-eEEEEEeCCCCCCCccc-cCCCCc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---DQ----TVN-VKVIMATNRADTLDPAL-LRPGRL 82 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~----~~~-v~vi~ttn~~~~ld~al-~r~grf 82 (173)
..|-||+|||+|.++... .+...|+..|... .. -.+ .++++.+..+ .+.... .+|=-+
T Consensus 126 ~~~lVL~iDEiD~l~~~~------------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~-~~~~~~~~SPFNI 192 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYP------------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED-YIILDINQSPFNI 192 (331)
T ss_pred CCCEEEEEechhhhccCc------------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccc-ccccCCCCCCccc
Confidence 469999999999998532 1112222222211 11 112 3333333222 233333 345567
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCC
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKI 125 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~ 125 (173)
...|+++.-+.++-..+++.+-.. .... .++.+-..|.|.
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~--~~~~-~~~~l~~~tgGh 232 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLE--FSQE-QLEQLMDWTGGH 232 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhcc--CCHH-HHHHHHHHHCCC
Confidence 788999999999999998877433 2222 277777777774
No 198
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.1 Score=41.73 Aligned_cols=70 Identities=14% Similarity=0.321 Sum_probs=51.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-|++||++|.+. ....+.|+..|+. +...+++|.+|+.++.+-+.+++ |. ..++|++|+.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCH
Confidence 3577788876553 2455678888984 55677777777789999999988 65 4589999998
Q ss_pred HHHHHHHHH
Q 030674 94 RQKRLVFQV 102 (173)
Q Consensus 94 ~~R~~il~~ 102 (173)
++-.+.+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 877666543
No 199
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.077 Score=42.12 Aligned_cols=69 Identities=23% Similarity=0.419 Sum_probs=52.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
.-||+|||+|.+.. ...+.++..++ .+..+..+|.+||+++.+-+-+++ |. ..+.|++|+.
T Consensus 110 ~kviiidead~mt~--------------~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~ 170 (325)
T COG0470 110 YKVVIIDEADKLTE--------------DAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSR 170 (325)
T ss_pred ceEEEeCcHHHHhH--------------HHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchH
Confidence 46999999998874 34566777777 456678889999999999999998 76 4577877666
Q ss_pred HHHHHHHH
Q 030674 94 RQKRLVFQ 101 (173)
Q Consensus 94 ~~R~~il~ 101 (173)
..+....+
T Consensus 171 ~~~i~~~e 178 (325)
T COG0470 171 LEAIAWLE 178 (325)
T ss_pred HHHHHHhh
Confidence 55554444
No 200
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=0.082 Score=41.85 Aligned_cols=91 Identities=18% Similarity=0.274 Sum_probs=67.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
-+|+|.|+|.|.... ...+-..|+. ..+.+-+|..+|+...+=+.+++ |. ..|.+|.|+.+
T Consensus 129 Kvvvi~ead~LT~dA--------------Q~aLRRTMEk--Ys~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~e 189 (351)
T KOG2035|consen 129 KVVVINEADELTRDA--------------QHALRRTMEK--YSSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDE 189 (351)
T ss_pred EEEEEechHhhhHHH--------------HHHHHHHHHH--HhcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHH
Confidence 488999999887321 1234444553 34456678888999999999998 64 45899999999
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCC
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDK 124 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g 124 (173)
+...++...+++..+. +.--+..+|+.++|
T Consensus 190 eI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 190 EITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 9999999999887766 54446677776654
No 201
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=94.68 E-value=0.14 Score=41.52 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=79.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC----CC-------CCCeEEEEEeCCCC------------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF----DQ-------TVNVKVIMATNRAD------------ 70 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~-------~~~v~vi~ttn~~~------------ 70 (173)
..|++|||+|.+-. .....+++.|+.= .. +.+.-|+|++|-..
T Consensus 122 ~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 122 GGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred Cceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 57999999997542 1234455555531 11 23577899988665
Q ss_pred -CCCccccCCCCccceecC-CCCCHHHHHHHHHHHHccCCCCC------------cCC---H------------------
Q 030674 71 -TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFQVCTAKMNLSD------------EVD---L------------------ 115 (173)
Q Consensus 71 -~ld~al~r~grf~~~i~~-~~p~~~~R~~il~~~l~~~~~~~------------~~~---~------------------ 115 (173)
.+++.|.. |||..+.+ ..|+.+.=..+.++.+....... .++ +
T Consensus 188 i~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~e 265 (331)
T PF00493_consen 188 INLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEE 265 (331)
T ss_dssp T-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HH
T ss_pred cccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHH
Confidence 58999999 99988765 57776666667666665432110 000 0
Q ss_pred ------------HHHh---cCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 116 ------------EDYV---SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 116 ------------~~la---~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.... ......|++.|+.+++-|...|.-+-+..++.+|+..|++-+.
T Consensus 266 a~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 266 AKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp CHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 0001 1223478899999999999999888889999999999997553
No 202
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.65 E-value=0.1 Score=45.96 Aligned_cols=100 Identities=14% Similarity=0.278 Sum_probs=65.4
Q ss_pred CeEEEEEeCCC--CCCCccccCCCCcc---ceecCC--CCC-HHHHHHHHHHHHccCCC---CCcCC---HHHHhc----
Q 030674 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFP--LPD-RRQKRLVFQVCTAKMNL---SDEVD---LEDYVS---- 120 (173)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~--~p~-~~~R~~il~~~l~~~~~---~~~~~---~~~la~---- 120 (173)
.+.+|+++|.. ..+|+++.. ||. ..++|. .++ .+.+..+++.+-+.... ...++ +..+..
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 46788888774 677899988 886 556655 233 56666666544432211 11222 122211
Q ss_pred CC---CC--CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 121 RP---DK--ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 121 ~t---~g--~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
.+ .. +..++|..+++.|...|...+...++.+|+.+|++.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 11 11 458999999999999999999888999999988854
No 203
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.50 E-value=0.11 Score=40.62 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=47.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
.-|++|+++|.+.. ...+.||..++ .+..+.++|.+|++++.+.+.+++ |... +.++.+
T Consensus 89 ~KV~II~~ae~m~~--------------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 89 KKIYIIYGIEKLNK--------------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred CEEEEeccHhhhCH--------------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 46889999997752 55678999998 577789999999999999999999 8654 556665
No 204
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.36 E-value=0.059 Score=40.07 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=40.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..++|+|||+..+++.+....... ...++.+.. ....+.-+|.+|.++..||+.+++ +.+.++++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~--------~~~~~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV--------PEIIEFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T------------HHHHGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccc--------hHHHHHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 469999999999998874321111 112233322 234468899999999999999987 88888877544
No 205
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.073 Score=42.33 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=46.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
-|++|+++|.+.. ...+.|++.++ .+..++++|..|++++.|.|.+++ |+. .+.|+++
T Consensus 97 kv~ii~~ad~mt~--------------~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMTL--------------DAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred eEEEEechhhcCH--------------HHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 5999999998763 45678999998 467788999999999999999998 764 3556654
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.13 Score=46.09 Aligned_cols=120 Identities=16% Similarity=0.267 Sum_probs=79.1
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--CC-------CCCeEEEEEeCCCC--------
Q 030674 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQ-------TVNVKVIMATNRAD-------- 70 (173)
Q Consensus 8 ~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~-------~~~v~vi~ttn~~~-------- 70 (173)
..+..-.|||+|||+|- .+ ..+++.|+.-+|.= .. -++.++|+|||-=.
T Consensus 588 aVRr~PySViLlDEIEK-----------AH---pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~ 653 (786)
T COG0542 588 AVRRKPYSVILLDEIEK-----------AH---PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD 653 (786)
T ss_pred hhhcCCCeEEEechhhh-----------cC---HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcc
Confidence 33444459999999993 12 26888888888732 11 13588999998531
Q ss_pred --------------------CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhc
Q 030674 71 --------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVS 120 (173)
Q Consensus 71 --------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~ 120 (173)
...|+++. |+|.+|.|.+.+.+.-.+|+..++.+. .+. ++--.+.++.
T Consensus 654 ~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~ 731 (786)
T COG0542 654 GDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAE 731 (786)
T ss_pred ccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 12345555 899999999999999999998877532 111 1112344555
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHH
Q 030674 121 RP--DKISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 121 ~t--~g~s~~di~~l~~~a~~~a~~ 143 (173)
.+ +.|-.+-|.+++++-......
T Consensus 732 ~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 732 KGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred hccCCCcCchHHHHHHHHHHHHHHH
Confidence 54 567788888888876544443
No 207
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.53 Score=39.85 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=88.2
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC----CCCccceecCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR----PGRLDRKIEFP 89 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r----~grf~~~i~~~ 89 (173)
|-++++||+|.|+..+ +.++-.+. ++.. ..++++++|+.+|..+.=|..|-| -+.--..+.|+
T Consensus 257 ~~llVlDEmD~L~tr~-----------~~vLy~lF-ewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~ 323 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS-----------QTVLYTLF-EWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFP 323 (529)
T ss_pred eEEEEechhhHHhhcc-----------cceeeeeh-hccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeec
Confidence 7899999999998432 11222221 2222 356689999999998876655542 12234578899
Q ss_pred CCCHHHHHHHHHHHHccCCCCCc--CCHHHHhcCCCCCCHHHHHH---HHHHHHHHHHHhcC----------------Cc
Q 030674 90 LPDRRQKRLVFQVCTAKMNLSDE--VDLEDYVSRPDKISAAEIAA---ICQEAGMHAVRKNR----------------YV 148 (173)
Q Consensus 90 ~p~~~~R~~il~~~l~~~~~~~~--~~~~~la~~t~g~s~~di~~---l~~~a~~~a~~~~~----------------~~ 148 (173)
+=+.++-.+|+..-+........ .-+.-.|....|.|| |+.. +|++|...+-...+ .+
T Consensus 324 PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~ 402 (529)
T KOG2227|consen 324 PYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKK 402 (529)
T ss_pred CCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccc
Confidence 99999999999988776544322 235567777787765 6665 45555544433321 24
Q ss_pred cCHHHHHHHHHhhCCCC
Q 030674 149 ILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 149 i~~~d~~~al~~~~p~~ 165 (173)
|..+++..++..+-.+.
T Consensus 403 v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 403 VGVEHVAAVISKVDGSP 419 (529)
T ss_pred cchHHHHHHhhhhccCh
Confidence 55777888877766443
No 208
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=93.97 E-value=1.4 Score=34.56 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=71.8
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC---ccccCCCCccceecCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD---PALLRPGRLDRKIEFPL 90 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld---~al~r~grf~~~i~~~~ 90 (173)
.-+|+|++++.+... .....|+..+... .+..++|.+++.++.-. ..+..- .-...+.+..
T Consensus 47 ~kliii~~~~~~~~~-------------~~~~~L~~~l~~~--~~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~ 110 (302)
T TIGR01128 47 RRLVELRNPEGKPGA-------------KGLKALEEYLANP--PPDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKT 110 (302)
T ss_pred CeEEEEECCCCCCCH-------------HHHHHHHHHHhcC--CCCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecC
Confidence 468888888865321 1245666666653 23444555555332211 111110 0235678899
Q ss_pred CCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 91 PDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 91 p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|+..+...+++..+...+.. +.-.+..++..+. +|+..+.++.-..+.-.+..+++.+++...+...
T Consensus 111 ~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~----~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~ 178 (302)
T TIGR01128 111 PKEQELPRWIQARLKKLGLRIDPDAVQLLAELVE----GNLLAIAQELEKLALYAPDGKITLEDVEEAVSDS 178 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----cHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhh
Confidence 99999999999988877654 3234555666554 3444444443333333233368888887776544
No 209
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.79 E-value=0.5 Score=42.12 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred eEEEEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 60 v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
..||+.+|+. --|||+.=--|-..|+|.+|....-.+=|+....+.... .+...|...|+ ++..||..-++.-.+
T Consensus 439 RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQf 513 (877)
T KOG1969|consen 439 RPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQF 513 (877)
T ss_pred CCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHH
Confidence 5688888854 457776311488899999999776665555544443332 23344444444 667899999998877
Q ss_pred HHHHhcC--CccCHHHHHHHHHhhCCCCCccccc
Q 030674 140 HAVRKNR--YVILPKDFEKGYRTNVKKPDTDFEF 171 (173)
Q Consensus 140 ~a~~~~~--~~i~~~d~~~al~~~~p~~~~~~~~ 171 (173)
.+.+..+ ..+...++-......+.....-|+|
T Consensus 514 La~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~ 547 (877)
T KOG1969|consen 514 LASNVDRRDSSISVKLICAKNVGAKSNSDSLFSW 547 (877)
T ss_pred HHHhcccccccchhhhhhhhhhcccccccchHHH
Confidence 7765433 2355555544444444444444443
No 210
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=93.75 E-value=2.7 Score=33.61 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=71.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC------ccccCCCCccceec
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD------PALLRPGRLDRKIE 87 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld------~al~r~grf~~~i~ 87 (173)
.-+|++++.+.+-... ....+..+...+ ...+...++++..++..+.-. ..+.. ....+.
T Consensus 77 ~klvii~~~~~l~~~~----------~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~---~~~~~~ 142 (340)
T PRK05574 77 RKLVELRLPEFLTGAK----------GEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKK---KAVVVE 142 (340)
T ss_pred CeEEEEECCCCCCchh----------HHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHh---CceEEE
Confidence 4577788777553211 123444555555 333343455555555433211 12222 246788
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
++.|+..+....++..+...+.. +.-.+..++..+. +|+..+.++.-..+.-.+...+|.+++...+....
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~----~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~ 214 (340)
T PRK05574 143 AQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVE----GNLLALAQELEKLALLYPDGKITLEDVEEAVPDSA 214 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----chHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhh
Confidence 89999999999999998877655 2223445555333 45555555544444333222378888777665533
No 211
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.60 E-value=0.76 Score=40.58 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=62.7
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHH-hccCCCCCCCeEEEEEeC-CCC--------C------CCccc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLN-QMDGFDQTVNVKVIMATN-RAD--------T------LDPAL 76 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~v~vi~ttn-~~~--------~------ld~al 76 (173)
...||+|||++.++... .+.+..++. ... ....+.+|++++ .+. . |.+++
T Consensus 195 ~~~IILIDEiPn~~~r~-----------~~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eL 260 (637)
T TIGR00602 195 DKKIILVEDLPNQFYRD-----------TRALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEI 260 (637)
T ss_pred ceeEEEeecchhhchhh-----------HHHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhH
Confidence 46799999999876311 122333443 211 123444444444 222 0 22566
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCC--CCc------CCHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNL--SDE------VDLEDYVSRPDKISAAEIAAICQEAGMHAV 142 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~--~~~------~~~~~la~~t~g~s~~di~~l~~~a~~~a~ 142 (173)
+...|. .+|.|++.+..+-.+.|+..+..... ..+ -.+..++. .+.||+...+..-.+.+.
T Consensus 261 ls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 261 LEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSS 329 (637)
T ss_pred hcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHh
Confidence 532233 37899999999988888877764321 111 13445555 577899998886655544
No 212
>PF12846 AAA_10: AAA-like domain
Probab=93.07 E-value=0.13 Score=40.07 Aligned_cols=71 Identities=31% Similarity=0.405 Sum_probs=51.7
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC-----ccccCCCCcccee
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD-----PALLRPGRLDRKI 86 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld-----~al~r~grf~~~i 86 (173)
..|.++++||+..+.... .....+..++... .+.++.++.+|.++..++ +++.. -+...+
T Consensus 219 ~~~~~i~iDEa~~~~~~~---------~~~~~~~~~~~~~----Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i 283 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNP---------SGAEFLDELLREG----RKYGVGLILATQSPSDLPKSPIEDAILA--NCNTKI 283 (304)
T ss_pred CceEEEEeCCcccccccc---------chhhhhhHHHHHH----HhcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEE
Confidence 568999999999888542 1123444444444 344788999999999999 78887 777888
Q ss_pred cCCCCCHHHHH
Q 030674 87 EFPLPDRRQKR 97 (173)
Q Consensus 87 ~~~~p~~~~R~ 97 (173)
-+...+.+.+.
T Consensus 284 ~~~~~~~~~~~ 294 (304)
T PF12846_consen 284 IFRLEDSDDAE 294 (304)
T ss_pred EecCChHHHHH
Confidence 88887766666
No 213
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=92.87 E-value=1.6 Score=34.94 Aligned_cols=128 Identities=12% Similarity=0.140 Sum_probs=67.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC---CCCccccCCCCccceecCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~~~i~~~~ 90 (173)
+-+|++++.+.+-. .. ......|...+++..+ +.++|+.+++.++ .+...+.. +..+..+..
T Consensus 62 ~rlVvv~~~~~~~~--------~~---~~~~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~k~l~k---~~~~~~~~~ 126 (326)
T PRK07452 62 GRLVWLKNSPLCQG--------CS---EELLAELERTLPLIPE-NTHLLLTNTKKPDGRLKSTKLLQK---LAEEKEFSL 126 (326)
T ss_pred ceEEEEeCchhhcc--------CC---HHHHHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHHHHHHH---ceeEEEecC
Confidence 45677777543221 11 1344567777776433 3455555544332 12223332 233555544
Q ss_pred C---CHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--hcCCccCHHHHHHHHHh
Q 030674 91 P---DRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR--KNRYVILPKDFEKGYRT 160 (173)
Q Consensus 91 p---~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~--~~~~~i~~~d~~~al~~ 160 (173)
| +.++....++..++..+.. +.-.+..++..+. .|+..+.++--..+.- .....|+.+|+...+..
T Consensus 127 ~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g----~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~ 198 (326)
T PRK07452 127 IPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVG----NDSRRLYNELEKLALYAENSTKPISAEEVKALVSN 198 (326)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----ccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc
Confidence 3 4556677777777766555 2223555666443 4555555554444433 23457999999887754
No 214
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.58 E-value=0.21 Score=40.65 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=50.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-CCCCCeEEEEEeCCCCCCC---ccccCCCCccce-ecC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-DQTVNVKVIMATNRADTLD---PALLRPGRLDRK-IEF 88 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~vi~ttn~~~~ld---~al~r~grf~~~-i~~ 88 (173)
|.|.++||+|.+++-. . +.. +.+.+|-. ..+.++++|+.|.+.+-++ ..+++ ||.+. |++
T Consensus 138 ~ViFIldEfDlf~~h~--------r--Qtl---lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m 202 (408)
T KOG2228|consen 138 KVIFILDEFDLFAPHS--------R--QTL---LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFM 202 (408)
T ss_pred eEEEEeehhhccccch--------h--hHH---HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeec
Confidence 5677789999888532 0 011 22223321 3466899999999877554 66777 99976 666
Q ss_pred CCCC-HHHHHHHHHHHH
Q 030674 89 PLPD-RRQKRLVFQVCT 104 (173)
Q Consensus 89 ~~p~-~~~R~~il~~~l 104 (173)
+++- .++=..+++..+
T Consensus 203 ~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 203 LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 5444 888888888887
No 215
>PRK15115 response regulator GlrR; Provisional
Probab=92.56 E-value=0.25 Score=41.28 Aligned_cols=125 Identities=14% Similarity=0.260 Sum_probs=63.1
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
...|||||+|.+-.. ....++..++. +.. ...+-+|+||+. .++..+. .|+|..
T Consensus 229 ~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~-~~~f~~ 291 (444)
T PRK15115 229 GGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMA-RGEFRE 291 (444)
T ss_pred CCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHH-cCCccH
Confidence 478999999987632 22233333331 111 125778888874 3544443 356622
Q ss_pred -------eecCCCCCHHHHH----HHHHHHHccCCC----C-CcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 030674 85 -------KIEFPLPDRRQKR----LVFQVCTAKMNL----S-DEV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKN 145 (173)
Q Consensus 85 -------~i~~~~p~~~~R~----~il~~~l~~~~~----~-~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~ 145 (173)
.+.+..|...+|. .++++++..... . ..+ -+..+....=.=..++|++++.++... ..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~ 368 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TS 368 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CC
Confidence 2233445555553 355666654211 1 111 234444433223566777777766543 23
Q ss_pred CCccCHHHHHHHH
Q 030674 146 RYVILPKDFEKGY 158 (173)
Q Consensus 146 ~~~i~~~d~~~al 158 (173)
...|+.+++...+
T Consensus 369 ~~~i~~~~l~~~~ 381 (444)
T PRK15115 369 SPVISDALVEQAL 381 (444)
T ss_pred CCccChhhhhhhh
Confidence 3457777775444
No 216
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.24 E-value=0.26 Score=36.01 Aligned_cols=56 Identities=25% Similarity=0.343 Sum_probs=36.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----C----CCCCeEEEEEeCCCCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----D----QTVNVKVIMATNRADTLD 73 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~----~~~~v~vi~ttn~~~~ld 73 (173)
.||+|||+|-..+. ...+.+..-..+.+.|+..+++= . ..+++++|+|+|--....
T Consensus 70 gVVllDEidKa~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~ 134 (171)
T PF07724_consen 70 GVVLLDEIDKAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEI 134 (171)
T ss_dssp TEEEEETGGGCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHH
T ss_pred hhhhhHHHhhcccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchh
Confidence 49999999998864 22333333346777788777532 1 134799999999655433
No 217
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.96 E-value=0.4 Score=37.38 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=53.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..+++|+||+++... .+..+...+. ....+.-+|.||.+.. +..... .-...++++..
T Consensus 100 ~~~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~~~kilvTTR~~~-v~~~~~---~~~~~~~l~~L 157 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE----------------DLEELREPLP--SFSSGSKILVTTRDRS-VAGSLG---GTDKVIELEPL 157 (287)
T ss_dssp CTSEEEEEEEE-SHH----------------HH-------H--CHHSS-EEEEEESCGG-GGTTHH---SCEEEEECSS-
T ss_pred cccceeeeeeecccc----------------cccccccccc--cccccccccccccccc-cccccc---ccccccccccc
Confidence 349999999988532 1112222221 1223556777887643 222221 12578999999
Q ss_pred CHHHHHHHHHHHHccCCC-C---CcCCHHHHhcCCCCCCHHHHHHH
Q 030674 92 DRRQKRLVFQVCTAKMNL-S---DEVDLEDYVSRPDKISAAEIAAI 133 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~-~---~~~~~~~la~~t~g~s~~di~~l 133 (173)
+.++-.++|......... . ..-....++..|.|+ |--|..+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999988765441 1 112356788888764 4444444
No 218
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.95 E-value=0.62 Score=39.37 Aligned_cols=72 Identities=18% Similarity=0.387 Sum_probs=46.1
Q ss_pred HHHHHHHHHH----cCCe-EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 2 VRDVFRLAKE----NAPA-IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~----~~P~-il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
|.++|+..=+ -.|- |+||||++.||.. .++.....+.++...+ .+++|-|+..|.+|.++|..+
T Consensus 239 LsELfe~LPEvGD~dkPklVfFfDEAHLLF~d-------a~kall~~ieqvvrLI----RSKGVGv~fvTQ~P~DiP~~V 307 (502)
T PF05872_consen 239 LSELFEQLPEVGDLDKPKLVFFFDEAHLLFND-------APKALLDKIEQVVRLI----RSKGVGVYFVTQNPTDIPDDV 307 (502)
T ss_pred HHHHHHhCccCCCCCCceEEEEEechhhhhcC-------CCHHHHHHHHHHHHHh----hccCceEEEEeCCCCCCCHHH
Confidence 4455555432 2365 5669999999942 2232223333444444 466899999999999999999
Q ss_pred cCCCCcccee
Q 030674 77 LRPGRLDRKI 86 (173)
Q Consensus 77 ~r~grf~~~i 86 (173)
+. -+...|
T Consensus 308 L~--QLGnrI 315 (502)
T PF05872_consen 308 LG--QLGNRI 315 (502)
T ss_pred HH--hhhhHH
Confidence 97 444444
No 219
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.95 E-value=0.21 Score=41.08 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=44.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC------------CCCCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN------------RADTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn------------~~~~ld~al~r~gr 81 (173)
|.|+||||++-|-. ..++.|-..++ ..-.++ +|.+|| +|+.+|..++. |
T Consensus 279 pGVLFIDEvHmLDi--------------EcFsfLnralE--s~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI--------------ECFSFLNRALE--SELSPI-IILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSBH--------------HHHHHHHHHHT--STT--E-EEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhccH--------------HHHHHHHHHhc--CCCCcE-EEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 99999999986642 34444444555 233344 555566 57778888887 7
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLS 110 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~ 110 (173)
+ ..|...+.+.++-.+|++.-.+...+.
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 5 456667778999999998877665443
No 220
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.84 E-value=0.72 Score=37.34 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=58.2
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCCC-------CCCCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRA-------DTLDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~-------~~ld~al~ 77 (173)
...|||||+|.+-. .....++..++.-. ....+-+|++|+.. ..+.+.|.
T Consensus 94 gGtL~Ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 94 GGTLFLDELATASL--------------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CCEEEeCChHhCCH--------------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 57899999998753 22223333333210 12347788888642 12334444
Q ss_pred CCCCcc-ceecCCCCC--HHHHHHHHHHHHccCC----CC--CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 78 RPGRLD-RKIEFPLPD--RRQKRLVFQVCTAKMN----LS--DEVD---LEDYVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 78 r~grf~-~~i~~~~p~--~~~R~~il~~~l~~~~----~~--~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a 141 (173)
. |+. ..|++|+.. .++...++++++.... .. ..++ +..+....=-=..++|++++.+++..+
T Consensus 160 ~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 160 D--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred H--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 4 553 456666665 4556667777765421 11 1122 233333321225677777777766544
No 221
>PRK14700 recombination factor protein RarA; Provisional
Probab=91.17 E-value=1.8 Score=34.61 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCCeEEEEEe-CCCC-CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCC-CC------CcCCHHHHhcCCCCCCH
Q 030674 57 TVNVKVIMAT-NRAD-TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN-LS------DEVDLEDYVSRPDKISA 127 (173)
Q Consensus 57 ~~~v~vi~tt-n~~~-~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~-~~------~~~~~~~la~~t~g~s~ 127 (173)
++.+.+|++| .+|. .+.++|++ |. +++.|.+++.++-..+++..+.... +. ++--+..++. ++.
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a~ 78 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YNE 78 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hcC
Confidence 3456666654 4454 89999999 87 7899999999999999999886421 11 1112444555 455
Q ss_pred HHHHHHHHHH---HHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 128 AEIAAICQEA---GMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 128 ~di~~l~~~a---~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+|....++.- ...+...+...++.+++.+.+.+...
T Consensus 79 GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~ 117 (300)
T PRK14700 79 GDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSR 117 (300)
T ss_pred CHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHh
Confidence 6766655532 21111111224899999888865543
No 222
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=90.82 E-value=1.8 Score=36.01 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----CC----CCCeEEEEEeCCCCCCCccccCCCCcc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ----TVNVKVIMATNRADTLDPALLRPGRLD 83 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grf~ 83 (173)
.+..|||||+|.+-.. ....++..++.- .. ...+-+|++|+..- .....+|+|.
T Consensus 233 ~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~ 295 (441)
T PRK10365 233 DGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFR 295 (441)
T ss_pred CCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCch
Confidence 3678999999988632 122334444321 11 11356777775422 2333556764
Q ss_pred c-------eecCCCCCHHHH----HHHHHHHHccCCC----C-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 84 R-------KIEFPLPDRRQK----RLVFQVCTAKMNL----S-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 84 ~-------~i~~~~p~~~~R----~~il~~~l~~~~~----~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
. .+.+..|..-+| ..+.++++..... . ..+. +..+....=.=..++|.+++++++.. .
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~ 372 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---L 372 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---C
Confidence 3 233444444344 4566666654211 1 1122 23333322112456666666666543 2
Q ss_pred cCCccCHHHHHHHH
Q 030674 145 NRYVILPKDFEKGY 158 (173)
Q Consensus 145 ~~~~i~~~d~~~al 158 (173)
....++.+++...+
T Consensus 373 ~~~~i~~~~l~~~~ 386 (441)
T PRK10365 373 TGEYISERELPLAI 386 (441)
T ss_pred CCCccchHhCchhh
Confidence 33457777765544
No 223
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=90.03 E-value=1.2 Score=37.30 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=66.2
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----CC----CCCeEEEEEeCCCCCCCccccCCCCcc-
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ----TVNVKVIMATNRADTLDPALLRPGRLD- 83 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grf~- 83 (173)
...|||||+|.+-.. ....++..++.- .+ ...+-+|++|+.. ++ .+...|+|.
T Consensus 229 ~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~ 291 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN--LE-ALVRQGKFRE 291 (463)
T ss_pred CCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC--HH-HHHHcCCcHH
Confidence 578999999987531 122333333311 11 1245677777643 11 222233443
Q ss_pred --------ceecCCCCC--HHHHHHHHHHHHccCCCC-----CcCC---HHHHhcCCCCC--CHHHHHHHHHHHHHHHHH
Q 030674 84 --------RKIEFPLPD--RRQKRLVFQVCTAKMNLS-----DEVD---LEDYVSRPDKI--SAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 84 --------~~i~~~~p~--~~~R~~il~~~l~~~~~~-----~~~~---~~~la~~t~g~--s~~di~~l~~~a~~~a~~ 143 (173)
..|++|+.. .++...++++++...... ..++ +..+... +| ..++|++++.+++..+
T Consensus 292 ~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpgNvreL~~~~~~~~~~~-- 367 (463)
T TIGR01818 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--RWPGNVRQLENLCRWLTVMA-- 367 (463)
T ss_pred HHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--CCCChHHHHHHHHHHHHHhC--
Confidence 467777776 566777777777543211 1122 3334333 33 4578888887776544
Q ss_pred hcCCccCHHHHHHHH
Q 030674 144 KNRYVILPKDFEKGY 158 (173)
Q Consensus 144 ~~~~~i~~~d~~~al 158 (173)
....++.+|+...+
T Consensus 368 -~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 368 -SGDEVLVSDLPAEL 381 (463)
T ss_pred -CCCcccHHhchHHH
Confidence 23467778876555
No 224
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=88.67 E-value=1.2 Score=33.12 Aligned_cols=45 Identities=36% Similarity=0.533 Sum_probs=26.2
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
++++|||.|.-+ +....+.+..++..+. . .++=+|+||++|.-||
T Consensus 259 ~illiDEpE~~L----------Hp~~q~~l~~~l~~~~---~-~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHL----------HPSWQRKLIELLKELS---K-KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTS----------SHHHHHHHHHHHHHTG---G-GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCC----------CHHHHHHHHHHHHhhC---c-cCCEEEEeCccchhcC
Confidence 899999999655 2322333334444332 2 3555899999987654
No 225
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=88.08 E-value=1.2 Score=30.18 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCeEEEEccccccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIA 26 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~ 26 (173)
+.+.+..+.....+|+|||+|.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHHHHhcCCeEEEEeChHhcC
Confidence 345555666655799999999975
No 226
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=87.99 E-value=1.3 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
--|..++++|...+....+..++.+|+..||+
T Consensus 35 yrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 35 YRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 35777888888888888888999999999985
No 227
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=87.87 E-value=0.12 Score=31.32 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.3
Q ss_pred ccCHHHHHHHHHhhCCCC-CcccccC
Q 030674 148 VILPKDFEKGYRTNVKKP-DTDFEFY 172 (173)
Q Consensus 148 ~i~~~d~~~al~~~~p~~-~~~~~~~ 172 (173)
+|+.+||..||++++||. .++++.|
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 699999999999999996 4555544
No 228
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=87.64 E-value=3.8 Score=35.20 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=58.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCCCCCCccccCCCCcc-
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLD- 83 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~- 83 (173)
...|||||+|.+-. .....++..++. +.+ ...+-+|++||.. +. .+...|+|.
T Consensus 282 gGtL~ldeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~--l~-~~~~~~~f~~ 344 (509)
T PRK05022 282 GGTLFLDEIGELPL--------------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD--LR-EEVRAGRFRA 344 (509)
T ss_pred CCEEEecChhhCCH--------------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC--HH-HHHHcCCccH
Confidence 56799999998753 122233333332 111 1246788888753 11 122223433
Q ss_pred --------ceecCCCCC--HHHHHHHHHHHHccCCC----C-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 030674 84 --------RKIEFPLPD--RRQKRLVFQVCTAKMNL----S-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVR 143 (173)
Q Consensus 84 --------~~i~~~~p~--~~~R~~il~~~l~~~~~----~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~ 143 (173)
..|++|+.. .++...++++++.+... . ..++ +..|....=--..++|++++.+|+..+..
T Consensus 345 dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 345 DLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 335555554 24445666666654321 1 1122 33344433223788999999998876643
No 229
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=87.62 E-value=13 Score=29.87 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=70.0
Q ss_pred HHHHHHHHHc---CCeEEEEcccccccccccC---CCCCCchHHHHHHHHHHHhccCCCC-CCCeEE--EEEeCC---CC
Q 030674 3 RDVFRLAKEN---APAIIFIDEVDAIATARFD---AQTGADREVQRILMELLNQMDGFDQ-TVNVKV--IMATNR---AD 70 (173)
Q Consensus 3 ~~if~~A~~~---~P~il~ide~d~l~~~~~~---~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~v--i~ttn~---~~ 70 (173)
..++++.+.. -|.++-+|++..++....- ....-+...-.+...|+..+.+-.. .++.+| +++|.. +.
T Consensus 143 ~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~ 222 (309)
T PF10236_consen 143 QALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPK 222 (309)
T ss_pred HHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccC
Confidence 3455555433 3788889999999976321 1122233334666667766443222 334443 454433 22
Q ss_pred --CCCccccCCCC------cc-------------ceecCCCCCHHHHHHHHHHHHccCCCCC----cCCHHHHhcCCCCC
Q 030674 71 --TLDPALLRPGR------LD-------------RKIEFPLPDRRQKRLVFQVCTAKMNLSD----EVDLEDYVSRPDKI 125 (173)
Q Consensus 71 --~ld~al~r~gr------f~-------------~~i~~~~p~~~~R~~il~~~l~~~~~~~----~~~~~~la~~t~g~ 125 (173)
.++.++..... |. ..++++..+.+|-..+++.|....-+.. ..-..++. .+.|-
T Consensus 223 ~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~-~~s~G 301 (309)
T PF10236_consen 223 SPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLF-LSSNG 301 (309)
T ss_pred CccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHH-HhcCC
Confidence 45555554111 11 2678888899999999998887654432 11122222 23455
Q ss_pred CHHHHHH
Q 030674 126 SAAEIAA 132 (173)
Q Consensus 126 s~~di~~ 132 (173)
.|+++.+
T Consensus 302 Np~el~k 308 (309)
T PF10236_consen 302 NPRELEK 308 (309)
T ss_pred CHHHhcc
Confidence 6666653
No 230
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=87.46 E-value=3.5 Score=36.39 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=64.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCCC----CCeEEEEEeCCCCCCCccccCCCCc--
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQT----VNVKVIMATNRADTLDPALLRPGRL-- 82 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grf-- 82 (173)
...|||||+|.+-. .....++..++. +... -.+-+|+||+.. + ..+...|+|
T Consensus 417 ~GtL~ldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~--l-~~~~~~~~f~~ 479 (638)
T PRK11388 417 GGTLFLEKVEYLSP--------------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD--L-AMLVEQNRFSR 479 (638)
T ss_pred CCEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC--H-HHHHhcCCChH
Confidence 56789999987642 122233333331 1111 146688887743 2 223334565
Q ss_pred -------cceecCCCCC--HHHHHHHHHHHHccCC----CCCcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 83 -------DRKIEFPLPD--RRQKRLVFQVCTAKMN----LSDEV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 83 -------~~~i~~~~p~--~~~R~~il~~~l~~~~----~~~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
...|.+|+.. .++...++++++.... ....+ .+..|....=.=..++|++++.++...+ ..
T Consensus 480 dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~ 556 (638)
T PRK11388 480 QLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DN 556 (638)
T ss_pred HHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CC
Confidence 3445555554 2445566666665431 11112 2334444332235677777777766542 33
Q ss_pred CccCHHHHHHHHH
Q 030674 147 YVILPKDFEKGYR 159 (173)
Q Consensus 147 ~~i~~~d~~~al~ 159 (173)
..|+.+|+...+.
T Consensus 557 ~~i~~~~lp~~~~ 569 (638)
T PRK11388 557 GRIRLSDLPEHLF 569 (638)
T ss_pred CeecHHHCchhhh
Confidence 4677788766653
No 231
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=87.39 E-value=1.9 Score=30.01 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=36.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
++..+....|.+|+|||+..+.........+......+.+..+..... ..++.+|++++.+...
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCcc
Confidence 455666778999999999998754311011222223344444444443 2366677777765544
No 232
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=87.33 E-value=2.1 Score=34.53 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=59.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--C---C----CCCeEEEEEeCCC-------CCCCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--D---Q----TVNVKVIMATNRA-------DTLDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~---~----~~~v~vi~ttn~~-------~~ld~al~ 77 (173)
...|||||+|.+-. .....++..++.- . . ...+-+|+||+.. ..+.+.|.
T Consensus 101 gGtL~l~~i~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 101 GGTLFLDELATAPM--------------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CCeEEeCChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 46899999998753 1222333333321 1 1 1247778877652 23445555
Q ss_pred CCCCc-cceecCCCCC--HHHHHHHHHHHHccCC----CC--CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHH
Q 030674 78 RPGRL-DRKIEFPLPD--RRQKRLVFQVCTAKMN----LS--DEVD---LEDYVSRPDKISAAEIAAICQEAGMH 140 (173)
Q Consensus 78 r~grf-~~~i~~~~p~--~~~R~~il~~~l~~~~----~~--~~~~---~~~la~~t~g~s~~di~~l~~~a~~~ 140 (173)
. || ...|++|+.. .++...++++|+.... .. ..++ +..+....=-=..++|++++.+++..
T Consensus 167 ~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 167 D--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred H--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 5 66 3566776665 3455667777764321 11 1122 23333332222677888888887654
No 233
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=86.73 E-value=8.8 Score=31.20 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=47.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+-.|++||+|+....- -+++-..++.+ +.+..+...+|++..+.|++.. ||.+ ..+.+.+
T Consensus 131 ~fKlvILDEADaMT~~A--------------QnALRRviek~--t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~ 191 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA--------------QNALRRVIEKY--TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLT 191 (360)
T ss_pred ceeEEEecchhHhhHHH--------------HHHHHHHHHHh--ccceEEEEeccChhhcCchhhc--cccc-CCCCCCC
Confidence 57899999999876321 22233344433 3344455778999999999997 7754 5556666
Q ss_pred HHHHHHHHHHHHc
Q 030674 93 RRQKRLVFQVCTA 105 (173)
Q Consensus 93 ~~~R~~il~~~l~ 105 (173)
.+.-...+.+...
T Consensus 192 ~~~~~~r~shi~e 204 (360)
T KOG0990|consen 192 MAQQTERQSHIRE 204 (360)
T ss_pred hhhhhhHHHHHHh
Confidence 6555555555554
No 234
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=86.42 E-value=4 Score=35.17 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=65.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----CC----CCCeEEEEEeCCCCCCCccccCCCCc--
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ----TVNVKVIMATNRADTLDPALLRPGRL-- 82 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vi~ttn~~~~ld~al~r~grf-- 82 (173)
...|||||+|.+-. .....|+..++.- .+ ...+-+|++|+.. +.. +...|+|
T Consensus 291 ~GtL~ldei~~L~~--------------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~--l~~-~~~~~~f~~ 353 (534)
T TIGR01817 291 GGTLFLDEIGEISP--------------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEE-AVAKGEFRA 353 (534)
T ss_pred CCeEEEechhhCCH--------------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC--HHH-HHHcCCCCH
Confidence 57899999998753 2223344444321 11 1136777877642 222 2234455
Q ss_pred -------cceecCCCCC--HHHHHHHHHHHHccCC----CCCcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 83 -------DRKIEFPLPD--RRQKRLVFQVCTAKMN----LSDEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 83 -------~~~i~~~~p~--~~~R~~il~~~l~~~~----~~~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
...|.+|+.. .+....++++++.... ....++ +..+....=-=..++|++++.+++..+ ..
T Consensus 354 ~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~---~~ 430 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS---RS 430 (534)
T ss_pred HHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CC
Confidence 3456676665 4556677777776432 111122 333444332236677777777776443 33
Q ss_pred CccCHHHHH
Q 030674 147 YVILPKDFE 155 (173)
Q Consensus 147 ~~i~~~d~~ 155 (173)
..|+.+|+.
T Consensus 431 ~~I~~~~l~ 439 (534)
T TIGR01817 431 GTITRSDFS 439 (534)
T ss_pred CcccHHHCc
Confidence 467777774
No 235
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.90 E-value=1.1 Score=33.30 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..+.+.+.+..|.+|+||-+..++........ ....+.+..++..|..+....++.+|+|.......+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~---~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~ 154 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDR---ISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCcc---HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecC
Confidence 34445556668999999999998743211111 111223333444444444566788888765444443
No 236
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=85.63 E-value=3.2 Score=38.06 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=67.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCHH
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~ 94 (173)
.||++||.|.++. . +...-..+..++. ...+-+|+++|..+.-+..-.. +-+..++|+.|+.+
T Consensus 430 ~vil~devD~~~~-~-------dRg~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~ 492 (871)
T KOG1968|consen 430 FLILMDEVDGMFG-E-------DRGGVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSE 492 (871)
T ss_pred eEEEEeccccccc-h-------hhhhHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHH
Confidence 3999999998874 1 1111122233333 2355589999988877764544 55578999999998
Q ss_pred HHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHH
Q 030674 95 QKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMH 140 (173)
Q Consensus 95 ~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~ 140 (173)
++..-+-.++...... ..-.++++.+.+ ++||.+.+..-.+.
T Consensus 493 ~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 493 LIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred HHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 8887666655433222 233567777754 88998877765544
No 237
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=85.52 E-value=0.78 Score=32.10 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=29.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC---------CCCCCeEEEEEeCCCC-----CCCccccCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRAD-----TLDPALLRPG 80 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 80 (173)
.|+++||+..--+ +..+.+++.|.+- .-..+.+||||-|..+ .||.++..
T Consensus 64 ~ill~DEiNrapp--------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D-- 127 (131)
T PF07726_consen 64 NILLADEINRAPP--------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD-- 127 (131)
T ss_dssp SEEEEETGGGS-H--------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--
T ss_pred ceeeecccccCCH--------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--
Confidence 5899999875332 5566677766532 1123588899988766 67777777
Q ss_pred Cc
Q 030674 81 RL 82 (173)
Q Consensus 81 rf 82 (173)
||
T Consensus 128 RF 129 (131)
T PF07726_consen 128 RF 129 (131)
T ss_dssp TS
T ss_pred cc
Confidence 76
No 238
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=85.51 E-value=2 Score=35.93 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=63.8
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
..+|||||+|.+-.. ....++..++. +.. ...+-+|+||+.. +. .+.+.|+|..
T Consensus 238 ~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~~ 300 (457)
T PRK11361 238 EGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFRE 300 (457)
T ss_pred CCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchH
Confidence 468999999987531 22334444332 111 1247788888742 11 3334455543
Q ss_pred -------eecCCCCCHHHHH----HHHHHHHccCCC----C-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 030674 85 -------KIEFPLPDRRQKR----LVFQVCTAKMNL----S-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKN 145 (173)
Q Consensus 85 -------~i~~~~p~~~~R~----~il~~~l~~~~~----~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~ 145 (173)
.+.+..|...+|. .+..+++..... . ..++ +..+....=--..++|++++.+|...+ .
T Consensus 301 ~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~ 377 (457)
T PRK11361 301 DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---S 377 (457)
T ss_pred HHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---C
Confidence 3445555555553 355555554311 1 1122 233433332236778888887776432 3
Q ss_pred CCccCHHHHHHHH
Q 030674 146 RYVILPKDFEKGY 158 (173)
Q Consensus 146 ~~~i~~~d~~~al 158 (173)
...++.+|+...+
T Consensus 378 ~~~i~~~~l~~~~ 390 (457)
T PRK11361 378 GPIIFSEDLPPQI 390 (457)
T ss_pred CCcccHHHChHhh
Confidence 3457777775444
No 239
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=84.95 E-value=1.9 Score=26.26 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 126 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 126 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.---+.+++++|...+...+++.++.+|+..|++
T Consensus 32 ~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 32 VEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 3355677888888888888889999999999874
No 240
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=84.57 E-value=2.5 Score=36.55 Aligned_cols=126 Identities=15% Similarity=0.181 Sum_probs=63.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCCC----CCeEEEEEeCCCCCCCccccCCCCcc-
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQT----VNVKVIMATNRADTLDPALLRPGRLD- 83 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grf~- 83 (173)
...|||||+|.+-. .....|+..++. +... ..+-+|++||..- . .+...|+|.
T Consensus 308 gGTLfLdeI~~Lp~--------------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l--~-~~v~~g~fr~ 370 (526)
T TIGR02329 308 RGTLFLDEIGEMPL--------------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCAL--T-TAVQQGRFRR 370 (526)
T ss_pred CceEEecChHhCCH--------------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCH--H-HHhhhcchhH
Confidence 46899999998753 222233333332 1111 1346777776431 1 111223333
Q ss_pred --------ceecCCCCC--HHHHHHHHHHHHccCCCCC--cCC---HHH-------HhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 84 --------RKIEFPLPD--RRQKRLVFQVCTAKMNLSD--EVD---LED-------YVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 84 --------~~i~~~~p~--~~~R~~il~~~l~~~~~~~--~~~---~~~-------la~~t~g~s~~di~~l~~~a~~~a 141 (173)
..|++|+.. .++...++++|+....... .+. +.. +....=--..++|++++.+++..+
T Consensus 371 dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 371 DLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 355565555 3455566777776542110 111 111 323222236788888888887665
Q ss_pred HHhcCCccCHHHHHH
Q 030674 142 VRKNRYVILPKDFEK 156 (173)
Q Consensus 142 ~~~~~~~i~~~d~~~ 156 (173)
.......++.+++..
T Consensus 451 ~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 451 SAMPAGALTPDVLRA 465 (526)
T ss_pred ccCCCCccCHHHhhh
Confidence 322234577777643
No 241
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=84.43 E-value=5.3 Score=33.62 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=66.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-----CC----CCCeEEEEEeCCC-------CCCCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-----DQ----TVNVKVIMATNRA-------DTLDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~----~~~v~vi~ttn~~-------~~ld~al~ 77 (173)
...|||||+|.+-. .....|+..++.- .+ ...+-+|+||+.. ..+.+.|.
T Consensus 233 ~Gtl~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 233 GGTLFLDEIGDMPL--------------DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCEEEEeccccCCH--------------HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 46789999998753 1222344444321 11 1246777777642 12334444
Q ss_pred CCCCc-cceecCCCCC--HHHHHHHHHHHHccCCC----C-CcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 78 RPGRL-DRKIEFPLPD--RRQKRLVFQVCTAKMNL----S-DEV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 78 r~grf-~~~i~~~~p~--~~~R~~il~~~l~~~~~----~-~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
. || ...|.+|+.. .++...++++++..... . ..+ -+..+....=--..++|++++.++...+ ..
T Consensus 299 ~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~ 373 (469)
T PRK10923 299 H--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AG 373 (469)
T ss_pred H--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CC
Confidence 4 44 4566666665 35556677777754311 1 011 2334444333336788888888876543 22
Q ss_pred CccCHHHHHHHH
Q 030674 147 YVILPKDFEKGY 158 (173)
Q Consensus 147 ~~i~~~d~~~al 158 (173)
..|+.+|+...+
T Consensus 374 ~~i~~~~l~~~~ 385 (469)
T PRK10923 374 QEVLIQDLPGEL 385 (469)
T ss_pred CcccHHHCcHhh
Confidence 356666664333
No 242
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=83.84 E-value=7.5 Score=36.88 Aligned_cols=94 Identities=22% Similarity=0.295 Sum_probs=55.4
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..+.+|++||+|.. ..+..+....+.. ..+.-||.||.+.+.+ +....++.++++.|
T Consensus 295 ~krvLLVLDdv~~~----------------~~l~~L~~~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l 351 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ----------------DVLDALAGQTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCLP 351 (1153)
T ss_pred CCeEEEEEeCCCCH----------------HHHHHHHhhCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecCC
Confidence 45789999998732 2233333322211 2345567788755433 22356789999999
Q ss_pred CHHHHHHHHHHHHccCCCCCc--C-CHHHHhcCCCCCCHH
Q 030674 92 DRRQKRLVFQVCTAKMNLSDE--V-DLEDYVSRPDKISAA 128 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~--~-~~~~la~~t~g~s~~ 128 (173)
+.++..++|..+..+....++ . -..+++..+.|...+
T Consensus 352 ~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 352 SNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred CHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 999999999876644322221 0 123466777776543
No 243
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=83.49 E-value=5 Score=29.85 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccce
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRK 85 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~ 85 (173)
+..|-...|-++++||-- .+-+......+..++..+. .. +..+|.+|++.+.++. +++
T Consensus 138 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~--------~~~ 195 (207)
T PRK13539 138 LARLLVSNRPIWILDEPT----------AALDAAAVALFAELIRAHL---AQ-GGIVIAATHIPLGLPG--------ARE 195 (207)
T ss_pred HHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCchhhcc--------CcE
Confidence 344445679999999954 3333433444445554442 22 4568889998887774 345
Q ss_pred ecCCCCC
Q 030674 86 IEFPLPD 92 (173)
Q Consensus 86 i~~~~p~ 92 (173)
+.+..|.
T Consensus 196 ~~~~~~~ 202 (207)
T PRK13539 196 LDLGPFA 202 (207)
T ss_pred EeecCcc
Confidence 6655554
No 244
>PHA00012 I assembly protein
Probab=83.46 E-value=1.3 Score=36.05 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=39.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
-+++++||+...++.|......... + .+++.. ....++-+|.+|.+|+.+|+.++.
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk~p~~----v-ie~l~~----hRh~G~DvilITQ~ps~VDs~IR~ 137 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDKERQP----V-IDWFLH----ARKLGWDIIFIIQDISIMDKQARE 137 (361)
T ss_pred CcEEEEECcccccCCCCcCcCCcHH----H-HHHHHH----hccCCceEEEEcCCHHHHhHHHHH
Confidence 4799999999999988544332211 2 222222 234477799999999999999974
No 245
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=1.3 Score=35.89 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=29.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF 54 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 54 (173)
...||||||+|-+..++.+.+-..+-...-+...||..+++-
T Consensus 162 erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 162 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 468999999999998775554444333345666788888753
No 246
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=82.20 E-value=5.4 Score=33.33 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CC----CCCCeEEEEEeCCCCCCCccccC-----C
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD----QTVNVKVIMATNRADTLDPALLR-----P 79 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~~~~v~vi~ttn~~~~ld~al~r-----~ 79 (173)
-..||+||+..+=+. ....++..|+. +. ....|.+|++|+ ..++.++.. .
T Consensus 174 GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~ 237 (403)
T COG1221 174 GGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTR 237 (403)
T ss_pred CCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhh
Confidence 368999998876431 12234444442 21 123477777776 344444433 0
Q ss_pred CCccceecCCCCC--HHHHHHHHHHHHccC----CCCCcC-C---HHHHhc-CCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 80 GRLDRKIEFPLPD--RRQKRLVFQVCTAKM----NLSDEV-D---LEDYVS-RPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 80 grf~~~i~~~~p~--~~~R~~il~~~l~~~----~~~~~~-~---~~~la~-~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
-|+...|++|+.. .+++..+.++++... ...... . +..+-. ..+| ..++|++++.+++..+...
T Consensus 238 rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 238 RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQASGE 312 (403)
T ss_pred hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhccc
Confidence 1566677777665 566666777777543 222111 1 222222 2233 6789999999988777533
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=81.78 E-value=4.9 Score=33.08 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCC--CCC-------CCeEEEEEeCCC-------CCCCccccCCCCccceecCCCCC-HHHHHHHHHHHH
Q 030674 42 RILMELLNQMDGF--DQT-------VNVKVIMATNRA-------DTLDPALLRPGRLDRKIEFPLPD-RRQKRLVFQVCT 104 (173)
Q Consensus 42 ~~~~~ll~~l~~~--~~~-------~~v~vi~ttn~~-------~~ld~al~r~grf~~~i~~~~p~-~~~R~~il~~~l 104 (173)
.++..|++.++.- +.. -..++|++||.. +....++++ |+. .+.+|.|. ..+-.+|++..+
T Consensus 251 ~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~ 327 (361)
T smart00763 251 KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLL 327 (361)
T ss_pred HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHh
Confidence 5777788877642 111 126889999987 377899999 998 78999877 788889999888
Q ss_pred ccC
Q 030674 105 AKM 107 (173)
Q Consensus 105 ~~~ 107 (173)
...
T Consensus 328 ~~s 330 (361)
T smart00763 328 RNS 330 (361)
T ss_pred ccC
Confidence 753
No 248
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=81.60 E-value=1.7 Score=30.18 Aligned_cols=14 Identities=7% Similarity=0.503 Sum_probs=11.6
Q ss_pred CCeEEEEccccccc
Q 030674 13 APAIIFIDEVDAIA 26 (173)
Q Consensus 13 ~P~il~ide~d~l~ 26 (173)
.+..|+|+|+|.+-
T Consensus 69 ~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 69 KGGTLYLKNIDRLS 82 (138)
T ss_dssp TTSEEEEECGCCS-
T ss_pred CCCEEEECChHHCC
Confidence 67899999999875
No 249
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=81.44 E-value=7.5 Score=33.78 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=60.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCCC----CCeEEEEEeCCCCCCCccccCCCCcc-
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQT----VNVKVIMATNRADTLDPALLRPGRLD- 83 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~~----~~v~vi~ttn~~~~ld~al~r~grf~- 83 (173)
...|||||++.+-. .....|+..++. +.+. ..+-+|++||.. +. .+...|+|.
T Consensus 323 gGTLfLdeI~~Lp~--------------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~ 385 (538)
T PRK15424 323 GGTLFLDEIGEMPL--------------PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRR 385 (538)
T ss_pred CCEEEEcChHhCCH--------------HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchH
Confidence 46899999998753 222334444432 1111 135678877643 22 222334444
Q ss_pred --------ceecCCCCC--HHHHHHHHHHHHccCC--CCCcCCH----------HHHhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 84 --------RKIEFPLPD--RRQKRLVFQVCTAKMN--LSDEVDL----------EDYVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 84 --------~~i~~~~p~--~~~R~~il~~~l~~~~--~~~~~~~----------~~la~~t~g~s~~di~~l~~~a~~~a 141 (173)
..|++|+.. .++...++++++.... ....+.- ..+....=--..++|++++.+++..+
T Consensus 386 dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 386 DLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred HHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 234444444 2444566677776521 1111111 12222221236789999999887654
Q ss_pred HHhcCCccCHHHH
Q 030674 142 VRKNRYVILPKDF 154 (173)
Q Consensus 142 ~~~~~~~i~~~d~ 154 (173)
.......++.+++
T Consensus 466 ~~~~~~~i~~~~l 478 (538)
T PRK15424 466 SVEPTPDLTPQFL 478 (538)
T ss_pred CCCCcCccCHHHh
Confidence 3222234555554
No 250
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=81.04 E-value=3.6 Score=24.73 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
--+..++.+|...+...+++.|+.+|+..|+
T Consensus 35 ~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 35 EFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 3456677888888888889999999999885
No 251
>PRK04841 transcriptional regulator MalT; Provisional
Probab=80.86 E-value=12 Score=34.08 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=52.4
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCC--
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFP-- 89 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~-- 89 (173)
..|.+|+|||++.+-. ......+..++... +. ++.+|.+|.....++-.-.+ .-+..+++.
T Consensus 120 ~~~~~lvlDD~h~~~~----------~~~~~~l~~l~~~~----~~-~~~lv~~sR~~~~~~~~~l~--~~~~~~~l~~~ 182 (903)
T PRK04841 120 HQPLYLVIDDYHLITN----------PEIHEAMRFFLRHQ----PE-NLTLVVLSRNLPPLGIANLR--VRDQLLEIGSQ 182 (903)
T ss_pred CCCEEEEEeCcCcCCC----------hHHHHHHHHHHHhC----CC-CeEEEEEeCCCCCCchHhHH--hcCcceecCHH
Confidence 5699999999997631 12223444555443 22 33344455442223211111 112244555
Q ss_pred --CCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHH
Q 030674 90 --LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAA 128 (173)
Q Consensus 90 --~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~ 128 (173)
..+.++-.+++...+.. .++ .-++..+...|+|+..+
T Consensus 183 ~l~f~~~e~~~ll~~~~~~-~~~-~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 183 QLAFDHQEAQQFFDQRLSS-PIE-AAESSRLCDDVEGWATA 221 (903)
T ss_pred hCCCCHHHHHHHHHhccCC-CCC-HHHHHHHHHHhCChHHH
Confidence 67888888888766543 222 23466777778877543
No 252
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=79.97 E-value=9.9 Score=31.72 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=59.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCC-------CCCCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRA-------DTLDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~-------~~ld~al~ 77 (173)
...|||||+|.+-. .....++..++. +.. ...+-+|+||+.. ..+.+.|.
T Consensus 234 ~gtl~l~~i~~l~~--------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 234 GGTLFLDEIGDLPL--------------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CCEEEEechhhCCH--------------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 57899999998753 222233333321 111 1246777777643 12223332
Q ss_pred CCCCcc-ceecCCCCC--HHHHHHHHHHHHccCCC----C-CcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 78 RPGRLD-RKIEFPLPD--RRQKRLVFQVCTAKMNL----S-DEV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 78 r~grf~-~~i~~~~p~--~~~R~~il~~~l~~~~~----~-~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
. |+. ..|++|+.. .+....+.++++..... . ..+ -+..+....=--..++|++++.+|+..+ ..
T Consensus 300 ~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~ 374 (445)
T TIGR02915 300 Y--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EG 374 (445)
T ss_pred H--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CC
Confidence 2 322 344555443 23333456666654311 1 112 2344444432236788888888877533 22
Q ss_pred CccCHHHH
Q 030674 147 YVILPKDF 154 (173)
Q Consensus 147 ~~i~~~d~ 154 (173)
..++.+++
T Consensus 375 ~~i~~~~l 382 (445)
T TIGR02915 375 NQITAEDL 382 (445)
T ss_pred CcccHHHc
Confidence 34555554
No 253
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=79.81 E-value=4.6 Score=31.00 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=35.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
....|-.+.|.||+.|| +..+-+......+-.++..+ ....+..+|+.|+++.-.. ++|+
T Consensus 152 AIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~---~~~~g~tii~VTHd~~lA~-------~~dr 211 (226)
T COG1136 152 AIARALINNPKIILADE----------PTGNLDSKTAKEVLELLREL---NKERGKTIIMVTHDPELAK-------YADR 211 (226)
T ss_pred HHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHH---HHhcCCEEEEEcCCHHHHH-------hCCE
Confidence 34455567899999998 22222232223333344444 3444556777887655333 5666
Q ss_pred eecC
Q 030674 85 KIEF 88 (173)
Q Consensus 85 ~i~~ 88 (173)
+|++
T Consensus 212 ~i~l 215 (226)
T COG1136 212 VIEL 215 (226)
T ss_pred EEEE
Confidence 6654
No 254
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=79.52 E-value=16 Score=31.46 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=58.6
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCC-CC------CCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRA-DT------LDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~-~~------ld~al~ 77 (173)
...|||||+|.+-.. ....++..++. ... ...+-+|++|+.+ .. +.+.|.
T Consensus 299 ~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 299 GGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 578999999987531 12233333322 111 1246677777653 21 223343
Q ss_pred CCCCcc-ceecCCCCC--HHHHHHHHHHHHccC----CCC-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 78 RPGRLD-RKIEFPLPD--RRQKRLVFQVCTAKM----NLS-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 78 r~grf~-~~i~~~~p~--~~~R~~il~~~l~~~----~~~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
. |+. ..|++|+.. .+....++++++... ... ..+. +..|....=-=..++|++++.+|...+ ..
T Consensus 365 ~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~ 439 (520)
T PRK10820 365 Y--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQL---EG 439 (520)
T ss_pred h--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CC
Confidence 3 433 455566555 234555666666532 111 1222 222322221125677777777766433 22
Q ss_pred CccCHHHH
Q 030674 147 YVILPKDF 154 (173)
Q Consensus 147 ~~i~~~d~ 154 (173)
..++.+|+
T Consensus 440 ~~i~~~~~ 447 (520)
T PRK10820 440 YELRPQDI 447 (520)
T ss_pred CcccHHHc
Confidence 34565654
No 255
>PF13173 AAA_14: AAA domain
Probab=78.17 E-value=2.8 Score=28.65 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc--ccCCCCccceecCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA--LLRPGRLDRKIEFPL 90 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a--l~r~grf~~~i~~~~ 90 (173)
.+.+|+|||+..+- . ....+..+.. . ..++-+|.|++....+... -.-+||.. .+++.+
T Consensus 61 ~~~~i~iDEiq~~~---------~---~~~~lk~l~d---~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~P 121 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---------D---WEDALKFLVD---N---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYP 121 (128)
T ss_pred CCcEEEEehhhhhc---------c---HHHHHHHHHH---h---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECC
Confidence 57999999998651 1 1133333332 1 1244566666555444222 22346865 677888
Q ss_pred CCHHH
Q 030674 91 PDRRQ 95 (173)
Q Consensus 91 p~~~~ 95 (173)
++..|
T Consensus 122 lsf~E 126 (128)
T PF13173_consen 122 LSFRE 126 (128)
T ss_pred CCHHH
Confidence 77665
No 256
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=78.16 E-value=8.2 Score=32.38 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=57.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC-CCCCCccccCCCCccceecCCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR-ADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~-~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
-++|.+||+-.- +-...-+++.|.+.|- +++|++|||+|+ |++|=..= +++...+|.
T Consensus 194 a~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~F~Pf-- 251 (467)
T KOG2383|consen 194 AILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQRENFIPF-- 251 (467)
T ss_pred ceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhhhhhH--
Confidence 478888887531 1111244445554442 349999999996 44443322 233333332
Q ss_pred HHHHHHHHHHHHccCCCCCcCCHHHHhcCC-CC--CCH-HHHHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLSDEVDLEDYVSRP-DK--ISA-AEIAAICQEAGM 139 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~~~~~~~~la~~t-~g--~s~-~di~~l~~~a~~ 139 (173)
..+|+....-..++..+|....+... ++ |.+ .|....+++.-.
T Consensus 252 ----I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 252 ----IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ----HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 46677777777888878887332222 22 333 388888887653
No 257
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=77.26 E-value=11 Score=33.73 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=37.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 120 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 120 ~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
..+-..|.+.|+.+++-|-.+|..+-...++.+|..+|++-+.
T Consensus 551 ~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 551 KRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred cCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 3445589999999999999999999999999999999998665
No 258
>COG1485 Predicted ATPase [General function prediction only]
Probab=77.19 E-value=3.2 Score=34.02 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=26.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (173)
-+|+|||++.- +- ...-+++.|++.|- .++|++|+|||.
T Consensus 132 ~vLCfDEF~Vt--------DI---~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 132 RVLCFDEFEVT--------DI---ADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred CEEEeeeeeec--------Ch---HHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 69999998841 11 11356666666653 338999999996
No 259
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.06 E-value=4.9 Score=31.62 Aligned_cols=86 Identities=17% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-------CCCCeEEEEEeCCCC---CCCccccCCCCc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-------QTVNVKVIMATNRAD---TLDPALLRPGRL 82 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~v~vi~ttn~~~---~ld~al~r~grf 82 (173)
..+|+||||+..-.+.. .+.. ....++.++++.=.-+. .-..+.+|++.+.+. .+++.+.| .|
T Consensus 100 k~lv~fiDDlN~p~~d~----ygtq-~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f 172 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDK----YGTQ-PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF 172 (272)
T ss_dssp SEEEEEEETTT-S---T----TS---HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE
T ss_pred cEEEEEecccCCCCCCC----CCCc-CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he
Confidence 35799999998654332 1111 11234444443321111 112578888877432 36777776 55
Q ss_pred cceecCCCCCHHHHHHHHHHHHcc
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
.++.++.|+.++-..|+..++..
T Consensus 173 -~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 173 -NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp -EEEE----TCCHHHHHHHHHHHH
T ss_pred -EEEEecCCChHHHHHHHHHHHhh
Confidence 47899999999888888777653
No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.04 E-value=15 Score=30.43 Aligned_cols=27 Identities=19% Similarity=0.508 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATA 28 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~ 28 (173)
+..+++.+....|.+|+||++..+...
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhhcc
Confidence 456777778889999999999998744
No 261
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=76.02 E-value=6.8 Score=31.13 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=37.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
+..|-...|.++++|| +..+-+......+..++..+ ....+..|+.||+.++.+..
T Consensus 147 ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l---~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 147 IALALLHDPELLILDE----------PTSGLDPESRREIWELLREL---AKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHH---HhCCCcEEEEeCCcHHHHHH
Confidence 3445566799999999 34555665556666666555 44445789999998876654
No 262
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=75.94 E-value=9 Score=34.19 Aligned_cols=111 Identities=21% Similarity=0.321 Sum_probs=55.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CC----CCCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FD----QTVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~----~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
...|||||+|.+-. .....++..++. .. ....+-+|++|+.. +. .+...|+|..
T Consensus 471 ~GtL~Ldei~~L~~--------------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~--l~-~~~~~~~f~~ 533 (686)
T PRK15429 471 KSSLFLDEVGDMPL--------------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD--LK-KMVADREFRS 533 (686)
T ss_pred CCeEEEechhhCCH--------------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC--HH-HHHHcCcccH
Confidence 57899999998742 122233333321 11 12356788888653 11 1122234433
Q ss_pred -------eecCCCCCHHHH----HHHHHHHHccCC----CC-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 85 -------KIEFPLPDRRQK----RLVFQVCTAKMN----LS-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 85 -------~i~~~~p~~~~R----~~il~~~l~~~~----~~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a 141 (173)
.+.+..|...+| -.++++++.+.. .. ..+. +..+....=--..++|++++.+|+..+
T Consensus 534 ~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 534 DLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 233444444444 446666665431 11 1111 333444332237788888888887643
No 263
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=75.08 E-value=7.6 Score=25.03 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
..-.-+++++.+|...+-..+++.|+.+|+.-|+++.-
T Consensus 42 ~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g 79 (85)
T cd00076 42 VLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 79 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC
Confidence 44455677778888888778889999999999998764
No 264
>PLN00035 histone H4; Provisional
Probab=74.64 E-value=7.5 Score=26.02 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 126 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 126 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
.-.-++.++.+|...+-..++++|+.+|+.-|++++-.
T Consensus 59 le~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 59 LKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 33456667777887777778899999999999988754
No 265
>PTZ00015 histone H4; Provisional
Probab=74.52 E-value=7.6 Score=25.97 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+.-.-+++++.+|...+-..++++|+.+|+..|++++-.
T Consensus 59 vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 59 VLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 444556778888888887888899999999999987653
No 266
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=74.42 E-value=7.2 Score=27.89 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+....+.+..++..+. .+ +..+|.+|++++.++
T Consensus 92 ~laral~~~p~illlDEP~~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 92 EIARALARNARLLILDEPTA----------ALTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHhcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 34555567899999999543 334444455555555552 22 456777787766544
No 267
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.63 E-value=19 Score=26.33 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (173)
+..|-...|.++++||--+ +-+......+..++.... . .+..+|.+|++++.++.+
T Consensus 134 la~al~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~---~-~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 134 IARLIACQSDLWLLDEVET----------NLSKENRDLLNNLIVMKA---N-SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCccccchh
Confidence 3344456799999999653 233333444445554332 1 245688888888877653
No 268
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=73.27 E-value=18 Score=26.37 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
.+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.
T Consensus 137 ~laral~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~---~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 137 AIAGAVAMRPDVLLLDEPT----------AGLDPAGREQMLAILRRLR---AE-GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeecccc
Confidence 3444556679999999944 3334444455555555542 22 4567777776653
No 269
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=73.23 E-value=8.5 Score=28.69 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 151 la~al~~~p~lllLDEP~----------~~LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~ 204 (218)
T cd03255 151 IARALANDPKIILADEPT----------GNLDSETGKEVMELLREL---NKEAGTTIVVVTHDPELA 204 (218)
T ss_pred HHHHHccCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCeEEEEECCHHHH
Confidence 344445679999999944 333444445555555554 222356688888877654
No 270
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=73.14 E-value=5.4 Score=32.84 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=27.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (173)
-.+|+|||+..-= - ....++..|+..+- ..++++|+|||.
T Consensus 128 ~~lLcfDEF~V~D--------i---aDAmil~rLf~~l~----~~gvvlVaTSN~ 167 (362)
T PF03969_consen 128 SRLLCFDEFQVTD--------I---ADAMILKRLFEALF----KRGVVLVATSNR 167 (362)
T ss_pred CCEEEEeeeeccc--------h---hHHHHHHHHHHHHH----HCCCEEEecCCC
Confidence 3599999998521 1 11356666666652 358999999996
No 271
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=72.64 E-value=13 Score=29.17 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
-.+..|-...|-++++|| +-.+-+...+..+-.++..+ +.. +..|++.|.+++.+.
T Consensus 148 V~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l---~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 148 VLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKEL---RQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHH---HHC-CCEEEEEeCCcHHhH
Confidence 345666677899999999 22344444445555555555 555 788999998877654
No 272
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=71.36 E-value=13 Score=28.15 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 142 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTV----------GLDPASRAAIVAHVRAL---CRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------CCCHHHHHHHHHHHHHH---HHhCCCEEEEEecChhhHh
Confidence 34555567799999999553 33343344444454444 2222456788888777664
No 273
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=71.21 E-value=12 Score=28.52 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 163 ~la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 163 EIAAALLHEPEILFLDEPT----------IGLDVVAQENIRNFLKEY---NRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred HHHHHHhcCCCEEEEcCCC----------CCCCHHHHHHHHHHHHHH---HhcCCCEEEEEecCHHHHH
Confidence 3445556679999999954 344444445555555544 2232456888888776543
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=71.20 E-value=13 Score=26.65 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
..+...+....|.+|+||++-.+... ........+..++..+. .. ++.+|.+++...
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~---~~-g~tvi~v~~~~~ 141 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALK---RF-GVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHH---HC-CCEEEEEecccc
Confidence 44555666778999999999987642 11122233344554443 22 555666666544
No 275
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=71.19 E-value=7.4 Score=33.72 Aligned_cols=92 Identities=18% Similarity=0.090 Sum_probs=59.3
Q ss_pred CCCccccCCCCccceecC-CCCCHHHHHHHHHHHHccCCC--CCc-----CCHHH------HhcC---------------
Q 030674 71 TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFQVCTAKMNL--SDE-----VDLED------YVSR--------------- 121 (173)
Q Consensus 71 ~ld~al~r~grf~~~i~~-~~p~~~~R~~il~~~l~~~~~--~~~-----~~~~~------la~~--------------- 121 (173)
.||.||++ |||...-+ ..|+.+.=..+-++.+--+.. .+. ++.+. +++.
T Consensus 507 ~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~ 584 (721)
T KOG0482|consen 507 NLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITG 584 (721)
T ss_pred CCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 68999999 99976654 478877777777765432111 111 12110 1111
Q ss_pred -------------CCC-CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 122 -------------PDK-ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 122 -------------t~g-~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
-.+ -||+-|-.+++.+...|.-+-...+..+|+.+||+-+..+
T Consensus 585 AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 585 AYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred HHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhh
Confidence 112 3677777777777777777767789999999999877644
No 276
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=71.10 E-value=9.4 Score=27.24 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.|.++++||...-+. ......+...+...... +..+|.+|++++...
T Consensus 99 ~~~llllDEp~~gld---------~~~~~~l~~~l~~~~~~-----~~~vii~TH~~~~~~ 145 (162)
T cd03227 99 PRPLYILDEIDRGLD---------PRDGQALAEAILEHLVK-----GAQVIVITHLPELAE 145 (162)
T ss_pred CCCEEEEeCCCCCCC---------HHHHHHHHHHHHHHHhc-----CCEEEEEcCCHHHHH
Confidence 789999999875331 11122344444444431 456788888776544
No 277
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=70.80 E-value=8.7 Score=28.53 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+....+.+..++..+ ..+.+..+|.+|++++.+
T Consensus 141 laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 141 LGRAIVREPKVFLMDEPL----------SNLDAKLRVQMRAELKRL---QQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 445556679999999944 334444445555555544 222245677888876544
No 278
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=70.74 E-value=10 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 156 IARALVNNPRLVLADEPTG----------NLDARNADSIFQLLGEL---NRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHHHH
Confidence 4445566799999999543 33343344444455444 2223556888888776544
No 279
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=70.72 E-value=54 Score=26.35 Aligned_cols=74 Identities=15% Similarity=-0.032 Sum_probs=46.9
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-hcCCccCHHHHHHHHHhh
Q 030674 84 RKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR-KNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 84 ~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~-~~~~~i~~~d~~~al~~~ 161 (173)
..+.+..|+..+....++..++..+.. +.-.+..++..+.| |+..+.++--..+.- .+...||.+|+...+...
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~----dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~ 210 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGG----DRLASRNEIEKLALYAHGKGEITLDDVRAVVGDA 210 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCC----CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCc
Confidence 456777889999999999888877665 32345667776553 444444443333332 233468989887776544
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.60 E-value=21 Score=26.27 Aligned_cols=55 Identities=9% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
+..|-...|.++++||--. +-+......+..++..+ ... +..+|.+|++++.++.
T Consensus 138 laral~~~p~~lilDEP~~----------~LD~~~~~~l~~~l~~~---~~~-~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLV----------ALDELSLLTIITKIQEH---RAK-GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCc----------ccCHHHHHHHHHHHHHH---HHc-CCEEEEEeCCchhccc
Confidence 4445566799999999543 33444444555555544 222 4567888888777663
No 281
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=70.41 E-value=13 Score=28.58 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
..+++.+. ..++|+|||+-. .....+...+...+++.+.. ..+..+|.+|+..+-
T Consensus 114 ~~il~~~~--~~sLvliDE~g~---------gT~~~eg~ai~~aile~l~~---~~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 114 SSILRNAT--EKSLVLIDELGR---------GTNPEEGIAIAIAILEYLLE---KSGCFVIIATHFHEL 168 (235)
T ss_dssp HHHHHH----TTEEEEEESTTT---------TSSHHHHHHHHHHHHHHHHH---TTT-EEEEEES-GGG
T ss_pred Hhhhhhcc--cceeeecccccC---------CCChhHHHHHHHHHHHHHHH---hccccEEEEeccchh
Confidence 45555553 468999999763 22223334555566666642 235678889987753
No 282
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.33 E-value=8.4 Score=28.60 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 139 ia~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 139 LARVLVRDKPVLLLDEPFA----------ALDPALRAEMLDLVLDL---HAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 3444456799999999553 33333334444444444 2233566777888776554
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=70.19 E-value=20 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a 75 (173)
+..|-...|.++++||--+ +-+....+.+..++..+ ... +..+|.+|+++..++..
T Consensus 136 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~-g~tiii~sH~~~~~~~~ 191 (201)
T cd03231 136 LARLLLSGRPLWILDEPTT----------ALDKAGVARFAEAMAGH---CAR-GGMVVLTTHQDLGLSEA 191 (201)
T ss_pred HHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHH---HhC-CCEEEEEecCchhhhhc
Confidence 4445556799999999543 33343344444455443 222 44678888887777653
No 284
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.18 E-value=16 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=34.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
+..|-...|.++++||-- .+-+....+.+..++..+. .. +..+|.+|++.+.++.
T Consensus 148 laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPY----------ANLDLEGITLVNRMISAHL---RG-GGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---hC-CCEEEEEecChhhhhh
Confidence 444555679999999955 3334444455555665542 22 3457788888877664
No 285
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=70.11 E-value=10 Score=29.00 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++.+.+.
T Consensus 164 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~L~~~---~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 164 IARCMVTQPEILMLDEPA----------AGLNPKETKELDELIAEL---RNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred HHHHHhcCCCEEEEcCCc----------cCCCHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHHHH
Confidence 344455679999999954 334444445555555554 2333567888888877654
No 286
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.02 E-value=10 Score=28.68 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 155 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 155 IARALMQQPKLILADEPVA----------SLDPASSRQVMDLLKRI---NREEGITVIVSLHQVDLAR 209 (241)
T ss_pred HHHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3444456799999999543 33343344444455444 2222456888888776554
No 287
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=69.89 E-value=4.9 Score=30.10 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=36.0
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
...+.+|+||.+-.++....... .......+.+..++..|..+....++.||.++.-....
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~ 172 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIGR-GMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV 172 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcCC-chHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence 45688999999999875421111 11122234556666666665556677788776544333
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=69.55 E-value=19 Score=26.60 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=33.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
+..|-...|.++++||-.+ +-+......+..++..+. .. +..+|.+|++++.++.
T Consensus 140 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFT----------AIDKQGVARLEALLAQHA---EQ-GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEecChhhhcc
Confidence 3444456799999999543 333333444445555442 22 3468888998888774
No 289
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=69.17 E-value=6.7 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=30.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (173)
+-..++.+.|.+|+||.+-.+...... ..+. ...+..++..|..+....++.+++++
T Consensus 132 i~~~~~~~~~~~vvID~l~~l~~~~~~---~~~~--~~~~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 132 VRYMAVSHGIQHIIIDNLSIMVSDERA---SGDE--RKALDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHhcCCceEEEECCHHHHhccCCC---chhH--HHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 334445667999999999988643210 1111 22334455555444344455555555
No 290
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=69.09 E-value=14 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.-+..++..|...|..+++.++..+|+.-++++.-
T Consensus 34 ~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~~ 68 (72)
T cd07981 34 DFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERNW 68 (72)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 44677888889999999999999999999998753
No 291
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=69.02 E-value=13 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.387 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 152 laral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 152 IARALVNQPSLVLADEPT----------GNLDNNNAKIIFDLMLEL---NRELNTSFLVVTHDLELA 205 (221)
T ss_pred HHHHHhCCCCEEEEeCCC----------CcCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 444455679999999944 333444444555555544 222245678888876644
No 292
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.88 E-value=11 Score=28.10 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 142 la~al~~~p~lllLDEPt----------~~LD~~~~~~~~~~l~~~---~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 142 LARALAVDPDVLLLDEPF----------SALDALTREQLQEELLDI---WRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHHcCCCEEEECCCC----------CCCCHHHHHHHHHHHHHH---HHHcCCEEEEEecCHHHH
Confidence 344445679999999944 334444445555555444 222245677888877644
No 293
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=68.83 E-value=13 Score=28.35 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.|+++++||+..=. +..+. ..+...+++.+.. ..+..+|++|++.+-..
T Consensus 110 ~~sLvllDE~~~gT-------~~~d~--~~i~~~il~~l~~---~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 110 SRSLVILDELGRGT-------STHDG--IAIAYATLHYLLE---EKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CCeEEEEccCCCCC-------ChhhH--HHHHHHHHHHHHh---ccCCeEEEEcccHHHHH
Confidence 58999999976422 11111 2333345555432 23566888888877543
No 294
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=68.60 E-value=14 Score=33.32 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=39.6
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-----cccCCCCcccee
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (173)
..|.+++|||+..++... .....+..++.... +.+..++.+|.+++++.. +++. -.+..|
T Consensus 628 ~~~~~i~iDEa~~ll~~~---------~~~~~i~~~~r~~R----K~~~~~~~~TQ~~~d~~~~~~~~~il~--n~~~ki 692 (785)
T TIGR00929 628 GRPFLIIIDEAWQYLGNP---------VFAAKIRDWLKTLR----KANGIVVLATQSINDALGSRIADSILE--QCATKI 692 (785)
T ss_pred CCCeEEEEechhhhcCCH---------HHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHhcCchHHHHHH--hCCEEE
Confidence 469999999999988422 22345555555553 235667788888876542 2223 345555
Q ss_pred cCCCC
Q 030674 87 EFPLP 91 (173)
Q Consensus 87 ~~~~p 91 (173)
.++.+
T Consensus 693 ~l~~~ 697 (785)
T TIGR00929 693 FLPNP 697 (785)
T ss_pred EcCCC
Confidence 55554
No 295
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=68.34 E-value=11 Score=34.74 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--CC-------CCCeEEEEEeCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--DQ-------TVNVKVIMATNR 68 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~~-------~~~v~vi~ttn~ 68 (173)
.+.+..+...-+||+|||+|. .+ ..+++.|+..+|.- .. -++++||+|+|.
T Consensus 651 ~LteavrrrP~sVVLfdeIEk-----------Ah---~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 651 QLTEAVKRRPYSVVLFEEIEK-----------AH---PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHHHHHhcCCceEEEEechhh-----------cC---HHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 345555555559999999993 11 24666666666632 11 235999999875
No 296
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=67.89 E-value=16 Score=27.17 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHH-HHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceec
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQR-ILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIE 87 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~ 87 (173)
|-...|.++++||-..-+ +..... .+..++..+ ....+..+|.+|++++.+ . .+|+++.
T Consensus 135 al~~~p~illlDEP~~~L----------D~~~~~~~l~~~l~~~---~~~~~~~iiiitH~~~~~-----~--~~d~i~~ 194 (204)
T cd03240 135 TFGSNCGILALDEPTTNL----------DEENIEESLAEIIEER---KSQKNFQLIVITHDEELV-----D--AADHIYR 194 (204)
T ss_pred HhccCCCEEEEcCCcccc----------CHHHHHHHHHHHHHHH---HhccCCEEEEEEecHHHH-----h--hCCEEEE
Confidence 334579999999976433 222223 334444443 232234467777765533 2 4566655
Q ss_pred C
Q 030674 88 F 88 (173)
Q Consensus 88 ~ 88 (173)
+
T Consensus 195 l 195 (204)
T cd03240 195 V 195 (204)
T ss_pred E
Confidence 4
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=67.70 E-value=14 Score=26.72 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--. +-+......+..++..+. .+.+..+|.+|++++.+.
T Consensus 108 laral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 108 LARALAQEPPILLLDEPTS----------HLDIAHQIELLELLRRLA---RERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3445566799999999543 333333444445555442 222456777888777543
No 298
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.67 E-value=10 Score=28.19 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..||.+|++++.+.
T Consensus 141 la~al~~~p~~lllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 141 LARALAREPSLLLLDEPL----------SALDAKLREELREELKEL---QRELGITTIYVTHDQEEAL 195 (213)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHH---HHHcCCEEEEEecCHHHHH
Confidence 344445679999999944 333444444444555444 2222455777888766443
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=67.59 E-value=42 Score=30.90 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=61.1
Q ss_pred HHHHHHH-HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRL-AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~-A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+..+|.. +....|..++|||.+.+-. ......+..|++.. .+++.+|++|...-.+.-+=.|
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~~----------~~l~~~l~fLl~~~-----P~~l~lvv~SR~rP~l~la~lR-- 179 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLISD----------PALHEALRFLLKHA-----PENLTLVVTSRSRPQLGLARLR-- 179 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccCc----------ccHHHHHHHHHHhC-----CCCeEEEEEeccCCCCccccee--
Confidence 4455554 4455799999999987642 22223344444333 4467777777764444444333
Q ss_pred CccceecCC----CCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCH
Q 030674 81 RLDRKIEFP----LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISA 127 (173)
Q Consensus 81 rf~~~i~~~----~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~ 127 (173)
-=|..++++ ..+.+|-.+++..... ..+ +..+++.+-..|+|+..
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~ 228 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAA 228 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHH
Confidence 224555555 4566777777665531 222 33467778888888743
No 300
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=67.47 E-value=18 Score=28.18 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=38.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC---CCcccc----
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALL---- 77 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~---- 77 (173)
.+..|-...|-|+++||=-.= -+.-.+. .+.+++-.++...+.-|+..|+++++ |-+.+.
T Consensus 140 aiARAL~~~P~lLLlDEPFgA----------LDalTR~---~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 140 AIARALATRPKLLLLDEPFGA----------LDALTRE---ELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHHhcCCCEEEEcCCcch----------hhHHHHH---HHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 455566778999999993211 1111112 23333333445555667777765431 122221
Q ss_pred CCCCccceecCCCC
Q 030674 78 RPGRLDRKIEFPLP 91 (173)
Q Consensus 78 r~grf~~~i~~~~p 91 (173)
+||+....+.++.|
T Consensus 207 ~P~~i~~~~~i~l~ 220 (248)
T COG1116 207 RPGRIGEELEIDLP 220 (248)
T ss_pred CCcceeeEEecCCC
Confidence 56677555555554
No 301
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=67.45 E-value=13 Score=28.79 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+....+.+..++..+ ....+..+|.+|++++.+
T Consensus 157 ~laral~~~p~lllLDEPt~----------~LD~~~~~~~~~~l~~l---~~~~~~tiii~sH~~~~i 211 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTS----------ALDIAHQVDVLALVHRL---SQERGLTVIAVLHDINMA 211 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 34555667899999999543 33444445555555554 222245578888877654
No 302
>PRK10869 recombination and repair protein; Provisional
Probab=67.35 E-value=27 Score=30.50 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceec-----
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIE----- 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~----- 87 (173)
.|.++++||+|+-. +......+..++..+. . +.-||++|+.|.-. + ..|.++.
T Consensus 452 ~~~~li~DEpd~gl----------d~~~~~~v~~~l~~l~---~--~~qvi~iTH~~~~~-----~--~ad~~~~v~k~~ 509 (553)
T PRK10869 452 ETPALIFDEVDVGI----------SGPTAAVVGKLLRQLG---E--STQVMCVTHLPQVA-----G--CGHQHFFVSKET 509 (553)
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh---c--CCEEEEEecCHHHH-----H--hCCEEEEEeccc
Confidence 57899999999644 2333344455555553 2 23477788776532 2 3333333
Q ss_pred --------CCCCCHHHHHHHHHHHHcc
Q 030674 88 --------FPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 88 --------~~~p~~~~R~~il~~~l~~ 106 (173)
+...+.++|.+-+..++.+
T Consensus 510 ~~~~t~s~i~~L~~~~R~~EiARMl~G 536 (553)
T PRK10869 510 DGGMTETHMQPLDKKARLQELARLLGG 536 (553)
T ss_pred cCCeeeEEEEECChhHHHHHHHHHhCC
Confidence 3345666666666666544
No 303
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.25 E-value=12 Score=28.47 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..||.+|++++.+
T Consensus 147 la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tvii~sH~~~~~ 200 (239)
T cd03296 147 LARALAVEPKVLLLDEPFG----------ALDAKVRKELRRWLRRL---HDELHVTTVFVTHDQEEA 200 (239)
T ss_pred HHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 3444456799999999543 33444445555555554 222245688888876643
No 304
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.18 E-value=13 Score=29.00 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=34.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||-- .+-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 147 ~laraL~~~p~llilDEPt----------~gLD~~~~~~l~~~l~~l---~~~~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPT----------AGLDPQGVKELIDFLNDL---PETYGMTVIFSTHQLDLVP 202 (277)
T ss_pred HHHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 4455556789999999944 333443344455555544 2333466888888877654
No 305
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.81 E-value=12 Score=27.86 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+....+.+..++..+ ....+..+|.+|++++.+.
T Consensus 142 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 142 LARALAAQPELLLLDEPF----------SALDRALRLQLLPELKQI---KKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHH---HHHcCcEEEEEecCHHHHH
Confidence 444556679999999944 334444444444555444 2222456788888776553
No 306
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=66.73 E-value=13 Score=28.12 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|-++++||-- .+-+....+.+..++..+ ....+..+|.+|++++.+
T Consensus 125 la~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~ 178 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPF----------GALDALTRGNLQEELMQI---WEEHRVTVLMVTHDVDEA 178 (230)
T ss_pred HHHHHHcCCCEEEEcCCC----------cCCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 444556679999999944 333444444544555444 222245688888877643
No 307
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.64 E-value=14 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.383 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ..+.+..+|.+|++++.+.
T Consensus 141 ~la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPT----------IGLDPQTRAHVWEYIEKL---KEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred HHHHHHhcCCCEEEEcCCc----------cCCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3445556779999999954 333343344444555444 2232456777888776544
No 308
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=66.45 E-value=6.2 Score=29.67 Aligned_cols=85 Identities=12% Similarity=0.218 Sum_probs=43.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-cccCCC------Cccc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-ALLRPG------RLDR 84 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-al~r~g------rf~~ 84 (173)
..|.+|+||.+.+++...... ........+.+..++..|..+....++.+|+|+......+. .....| -.|.
T Consensus 106 ~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~~~~d~ 184 (225)
T PRK09361 106 ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLEHWSKT 184 (225)
T ss_pred hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhhhhccE
Confidence 578999999999987532111 11111222344444444444444557777776554443332 111111 2344
Q ss_pred eecCCCCCHHHHH
Q 030674 85 KIEFPLPDRRQKR 97 (173)
Q Consensus 85 ~i~~~~p~~~~R~ 97 (173)
+|.+..+....|.
T Consensus 185 ii~l~~~~~~~r~ 197 (225)
T PRK09361 185 ILRLEKFRNGKRR 197 (225)
T ss_pred EEEEEEccCCeEE
Confidence 6666665444443
No 309
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=66.10 E-value=13 Score=27.78 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 156 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 156 IARALALNPKLLIADEPTS----------ALDVSVQAQILDLLKKL---QEELGLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHHhcCCCEEEecCCCC----------CCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHHH
Confidence 3444456799999999543 33343344555555544 2222456888888766443
No 310
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=7.1 Score=33.15 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=47.1
Q ss_pred HHHHHHHHH----HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC------CC-------------CC
Q 030674 2 VRDVFRLAK----ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF------DQ-------------TV 58 (173)
Q Consensus 2 l~~if~~A~----~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~------~~-------------~~ 58 (173)
|.+++..|. +.+..||||||+|-+.....+-....+-.-.-+...||..+++- ++ +.
T Consensus 276 i~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTt 355 (564)
T KOG0745|consen 276 IQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTT 355 (564)
T ss_pred HHHHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEecc
Confidence 344444442 33568999999999985432211111111124455667766642 11 12
Q ss_pred CeEEEEEeCCCCCCCccccCCCCcc-ceecCCCCC
Q 030674 59 NVKVIMATNRADTLDPALLRPGRLD-RKIEFPLPD 92 (173)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~-~~i~~~~p~ 92 (173)
+|++|+. -.-..||.-+-| |.+ ..+-|+.|+
T Consensus 356 nILFias-GAF~~Ldk~I~r--R~~d~slGFg~~s 387 (564)
T KOG0745|consen 356 NILFIAS-GAFVGLDKIISR--RLDDKSLGFGAPS 387 (564)
T ss_pred ceEEEec-ccccchHHHHHH--hhcchhcccCCCC
Confidence 2444443 334457777766 644 667788883
No 311
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.94 E-value=13 Score=26.91 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+. ...+..+|.+|++++.++
T Consensus 110 ~la~al~~~p~llilDEP~----------~~LD~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 110 ALARALAMDPDVLLLDEPT----------SALDPITRREVRALLKSLQ---AQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 3455556779999999944 3344444455555555542 222355777777766554
No 312
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.94 E-value=12 Score=28.18 Aligned_cols=54 Identities=19% Similarity=0.454 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 151 la~al~~~p~lllLDEP~----------~~LD~~~~~~l~~~l~~~---~~~~~~tvii~sH~~~~~ 204 (233)
T cd03258 151 IARALANNPKVLLCDEAT----------SALDPETTQSILALLRDI---NRELGLTIVLITHEMEVV 204 (233)
T ss_pred HHHHHhcCCCEEEecCCC----------CcCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 344445679999999944 334444445555555444 223345688888877654
No 313
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=65.89 E-value=8.4 Score=28.77 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCC-------CCccce
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP-------GRLDRK 85 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~-------grf~~~ 85 (173)
.+.+|+||-+-.++....... .......+.+..++..|..+....++.||.|+.-.......-.+| ...|-+
T Consensus 103 ~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~ 181 (218)
T cd01394 103 KVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVI 181 (218)
T ss_pred CCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEE
Confidence 389999999999864221111 111222233444444454444556788888766543333221122 135666
Q ss_pred ecCCCCC
Q 030674 86 IEFPLPD 92 (173)
Q Consensus 86 i~~~~p~ 92 (173)
|.+....
T Consensus 182 i~l~~~~ 188 (218)
T cd01394 182 LRLEKLR 188 (218)
T ss_pred EEEEEcC
Confidence 7776554
No 314
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=65.86 E-value=8.9 Score=35.93 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.4
Q ss_pred cCCeEEEEccccccccc
Q 030674 12 NAPAIIFIDEVDAIATA 28 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~ 28 (173)
..||+|+|||+=..+.+
T Consensus 98 ~~P~LILiDEl~~Y~~~ 114 (1035)
T PF04465_consen 98 GRPVLILIDELVAYARQ 114 (1035)
T ss_pred CCCEEEEeecHHHHHHH
Confidence 46999999999988863
No 315
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=65.82 E-value=15 Score=27.84 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 156 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 156 IARALAQQPDLILADEPIA----------SLDPKTSKQVMDYLKRI---NKEDGITVIINLHQVDLA 209 (243)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 4444556799999999543 33343344555555544 222245677888877654
No 316
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=65.82 E-value=13 Score=28.12 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.|+++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 136 laral~~~p~vllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 136 IALALLLEPPFLIADEPTT----------DLDVVNQARVLKLLREL---RQLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHHHhcCCCEEEEcCCcc----------ccCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3444456799999999553 33333334444444444 2223456777887766543
No 317
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=65.77 E-value=18 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=34.5
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..|--+.|+++++|| +..+-+-...+.+..|+.++. ..+..||.+|+..+++.
T Consensus 145 ARAlvh~P~i~vlDE----------P~sGLDi~~~r~~~dfi~q~k----~egr~viFSSH~m~Eve 197 (245)
T COG4555 145 ARALVHDPSILVLDE----------PTSGLDIRTRRKFHDFIKQLK----NEGRAVIFSSHIMQEVE 197 (245)
T ss_pred HHHHhcCCCeEEEcC----------CCCCccHHHHHHHHHHHHHhh----cCCcEEEEecccHHHHH
Confidence 344457899999999 334455555677777777663 33566777777655443
No 318
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=65.74 E-value=15 Score=27.60 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. ...+..+|.+|++++.+.
T Consensus 142 la~al~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~---~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPT----------EGIQPSIIKDIGRVIRRLR---AEGGMAILLVEQYLDFAR 196 (230)
T ss_pred HHHHHhcCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHH---HcCCcEEEEEeCCHHHHH
Confidence 444556679999999954 3344444455555555542 223456888888776543
No 319
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=65.68 E-value=15 Score=23.95 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
.-+..+...|...|...++++|+.+|+..|++..-+
T Consensus 51 ~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~ 86 (91)
T COG2036 51 EYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGR 86 (91)
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhcc
Confidence 445667777888888889999999999999987654
No 320
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=65.63 E-value=11 Score=29.78 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.1
Q ss_pred cCCeEEEEcccccccccc
Q 030674 12 NAPAIIFIDEVDAIATAR 29 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~ 29 (173)
..|.||+|||-|..+...
T Consensus 142 ~~kvvlLIDEYD~p~~~~ 159 (284)
T PF09820_consen 142 GKKVVLLIDEYDKPINDA 159 (284)
T ss_pred CCceEEEecCccHHHHHH
Confidence 458999999999988654
No 321
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.55 E-value=12 Score=29.42 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 161 laral~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTG----------GLDPKGEEDFINLFERL---NKEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHHHhCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 4445556799999999553 33333344444455444 222345688888887654
No 322
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=65.48 E-value=15 Score=27.04 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 137 laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~~ 190 (205)
T cd03226 137 IAAALLSGKDLLIFDEPT----------SGLDYKNMERVGELIRELA---AQ-GKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHhCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 444455679999999944 3344444455555555542 22 456788888766543
No 323
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.31 E-value=14 Score=28.53 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 162 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~g~tvii~tH~~~~~~ 217 (262)
T PRK09984 162 AIARALMQQAKVILADEPIA----------SLDPESARIVMDTLRDI---NQNDGITVVVTLHQVDYAL 217 (262)
T ss_pred HHHHHHhcCCCEEEecCccc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34455567899999999553 33343344555555544 2222466888888877543
No 324
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=65.26 E-value=15 Score=27.87 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
.+++.| ..|++|+|||+-.=. ...+...+...+++.+.. ..+..+|.+|++.+-.....
T Consensus 102 ~il~~~--~~~sLvLlDE~~~Gt---------~~~dg~~la~ail~~L~~---~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 102 NILRHA--TPDSLVILDELGRGT---------STHDGYAIAHAVLEYLVK---KVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHhC--CCCeEEEEecccCCC---------CchHHHHHHHHHHHHHHH---hcCCcEEEEeccHHHHHHhh
Confidence 444444 468999999965321 111122344444555532 13566888888766554433
No 325
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.25 E-value=16 Score=28.54 Aligned_cols=57 Identities=28% Similarity=0.489 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
|-.+..|-...|.+||+||=- .+-++-....+..++..+. ..-...+|..|++.+.+
T Consensus 153 RvaLARAialdPell~~DEPt----------sGLDPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 153 RVALARAIALDPELLFLDEPT----------SGLDPISAGVIDELIRELN---DALGLTVIMVTHDLDSL 209 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCC----------CCCCcchHHHHHHHHHHHH---HhhCCEEEEEECChHHH
Confidence 345667777889999999932 3333333455666665553 23355577788765543
No 326
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.92 E-value=14 Score=27.98 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..||.+|++++.+
T Consensus 147 ia~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 147 LARALALDPELLLYDEPT----------AGLDPIASGVIDDLIRSL---KKELGLTSIMVTHDLDTA 200 (235)
T ss_pred HHHHHhcCCCEEEecCCc----------ccCCHHHHHHHHHHHHHH---HHhcCcEEEEEecCHHHH
Confidence 344555679999999944 333443444444555444 222245677888876644
No 327
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=64.65 E-value=17 Score=28.05 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=34.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+.-+-...|-++++||- ..+-+....+.+..++..+ ....+..+|..|++.+.+.
T Consensus 149 IA~vLa~~P~iliLDEP----------ta~LD~~~~~~l~~~l~~L---~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 149 IAGVLAMGPEILLLDEP----------TAGLDPKGRRELLELLKKL---KEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred hhHHHHcCCCEEEEcCC----------CCCCCHHHHHHHHHHHHHH---HhcCCCeEEEEeCcHHHHH
Confidence 44455678999999993 3344444445555555555 4555566777787666554
No 328
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=64.50 E-value=12 Score=30.31 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=46.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCC-eEEEEEeCCCCC----CCccccCCCCccceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVN-VKVIMATNRADT----LDPALLRPGRLDRKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~vi~ttn~~~~----ld~al~r~grf~~~i~ 87 (173)
.|.||+|+|+|++-+ .++++|+..+..+...=+ ++|++.+..++. ||.+..+ ++... .
T Consensus 199 ~~lVIi~eD~EsF~~--------------~VL~dlI~ils~~~~~lP~vli~GiaTs~~~~~~~Lp~~~~~--~L~~~-~ 261 (330)
T PF07034_consen 199 PPLVIIFEDFESFDS--------------QVLQDLILILSSYLDRLPFVLIFGIATSVEAFHSRLPRSTLS--LLRIK-K 261 (330)
T ss_pred CCEEEEEcccccCCH--------------HHHHHHHHHHHhccCCcCEEEEEecCCChHHHHhhCCHHHHh--hcCce-E
Confidence 389999999998753 788888888876655445 566665555554 4444444 44332 2
Q ss_pred CCCCC-HHHHHHHHHHHHc
Q 030674 88 FPLPD-RRQKRLVFQVCTA 105 (173)
Q Consensus 88 ~~~p~-~~~R~~il~~~l~ 105 (173)
|..++ ..--..+++..+-
T Consensus 262 F~~~~~~~~l~~v~~~~l~ 280 (330)
T PF07034_consen 262 FQLQSSSEILERVLEKVLL 280 (330)
T ss_pred EEeCChHHHHHHHHHHHhc
Confidence 34444 3444456665553
No 329
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=64.39 E-value=15 Score=28.43 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 138 ~laral~~~p~lllLDEPt----------~~LD~~~~~~l~~~L~~~---~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 138 GIARALAANPQLLLLDEPF----------GALDAFTREQMQTLLLKL---WQETGKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3444556679999999944 334444445555555544 1222455778888776553
No 330
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=64.34 E-value=16 Score=28.21 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 130 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~---~~~~g~tiiivsH~~~~i~ 185 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQ----------GVDVNGQVALYDLIDQL---RRELDCAVLMVSHDLHLVM 185 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 34555567899999999553 33333344444444443 2222456778888777554
No 331
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=64.24 E-value=21 Score=32.38 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=42.8
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-----cccCCCCcccee
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (173)
..|.+++|||+..++.. ..+.....+..+.... .+.+..++.+|.+++++.. ++.. -.+..+
T Consensus 636 ~~~~~~viDEaw~ll~~-------~~~~~~~~i~~~~r~~----RK~g~~~~~~TQ~~~D~~~~~~~~~il~--n~~~~i 702 (797)
T TIGR02746 636 KRRKICIIDEAWSLLDG-------ANPQAADFIETGYRRA----RKYGGAFITITQGIEDFYSSPEARAAYA--NSDWKI 702 (797)
T ss_pred CCceEEEEecHHHHhhc-------ccHHHHHHHHHHHHHH----hhcCceEEEEEecHHHhccCHHHHHHHh--ccccee
Confidence 45999999999999851 1222334444444444 3446678889999988864 3444 456667
Q ss_pred cCCCC
Q 030674 87 EFPLP 91 (173)
Q Consensus 87 ~~~~p 91 (173)
.++.+
T Consensus 703 ~L~~~ 707 (797)
T TIGR02746 703 ILRQS 707 (797)
T ss_pred eecCC
Confidence 77765
No 332
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.18 E-value=13 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||-- .+-+......+..++..+. ...+..+|.+|++++.+
T Consensus 145 ~laral~~~p~llllDEPt----------~~LD~~~~~~l~~~L~~~~---~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 145 GVARALAADPPLLLMDEPF----------GALDPITRDQLQEEFKRLQ---QELGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHHHhcCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHH---HHcCCEEEEEecCHHHH
Confidence 3444556679999999954 3333433445555555442 22245688888877654
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=64.02 E-value=39 Score=26.43 Aligned_cols=61 Identities=20% Similarity=0.382 Sum_probs=36.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCCCccccC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r 78 (173)
+|..|--..|-++++||-=. +-+...+ ..|++.++++. ..+.--+|..|.+++++++.+..
T Consensus 181 LiaRALv~~P~LLiLDEP~~----------GLDl~~r---e~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 181 LIARALVKDPELLILDEPAQ----------GLDLIAR---EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHhcCCCEEEecCccc----------cCChHHH---HHHHHHHHHHhcCCCCceEEEEEcchhhcccccce
Confidence 56667677899999999332 2222112 23344444332 22234467778999999987764
No 334
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=63.78 E-value=16 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=32.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+ ..+.+..+|.+|++++.+.
T Consensus 140 laral~~~p~lllLDEP~----------~gLD~~~~~~~~~~l~~~---~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 140 LARCLVREQPILLLDEPF----------SALDPALRQEMLTLVSQV---CQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEECCHHHHH
Confidence 344455679999999954 333444444444455444 2222456777888877654
No 335
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=63.72 E-value=15 Score=28.50 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ....+..+|.+|++.+.+.
T Consensus 154 laral~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~---~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 154 LARAIALEPDLIMFDEPF----------VGQDPITMGVLVKLISEL---NSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHHHhcCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHH---HHhcCcEEEEEecCHHHHH
Confidence 444555679999999943 334444445555555554 2233456788888766543
No 336
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=63.70 E-value=14 Score=28.33 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 151 laral~~~p~lLlLDEPt~----------~LD~~~~~~l~~~L~~~---~~~~g~til~~sH~~~~~ 204 (254)
T PRK10418 151 IALALLCEAPFIIADEPTT----------DLDVVAQARILDLLESI---VQKRALGMLLVTHDMGVV 204 (254)
T ss_pred HHHHHhcCCCEEEEeCCCc----------ccCHHHHHHHHHHHHHH---HHhcCcEEEEEecCHHHH
Confidence 4455567799999999553 33333344444444443 222345688888877654
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=63.60 E-value=24 Score=29.93 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
.+..|-...|-++++||-- .+-+......+..++..+. ...+..||.+|++++.+..
T Consensus 411 ~la~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~L~~l~---~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPL----------QGLDPLNRQLVRRFVDVLI---SEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHhcCCCEEEEcCcc----------ccCCHHHHHHHHHHHHHHH---hcCCcEEEEEecchhhhhh
Confidence 3445556789999999943 3444444455555555552 2334557888888877753
No 338
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=63.57 E-value=17 Score=26.88 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 145 laral~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~---~~-~~tvi~~sH~~~~~~ 198 (211)
T cd03225 145 IAGVLAMDPDILLLDEPT----------AGLDPAGRRELLELLKKLK---AE-GKTIIIVTHDLDLLL 198 (211)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 444555679999999954 3334444445555555442 22 456888888766543
No 339
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.40 E-value=25 Score=25.15 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . +..+|.+|++++.+.
T Consensus 107 la~al~~~p~llllDEP~----------~gLD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 159 (171)
T cd03228 107 IARALLRDPPILILDEAT----------SALDPETEALILEALRALA---K--GKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHhcCCCEEEEECCC----------cCCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHH
Confidence 344445679999999944 3333333444445555442 2 256778888877664
No 340
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.25 E-value=18 Score=28.40 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 150 ~laral~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~l---~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATS----------MLDPRGRREVLETVRQL---KEQKGITVLSITHDLDEAA 205 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHcCCCEEEEEecCHHHHH
Confidence 34455567899999999543 33443344444455444 3333566778888776553
No 341
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=63.13 E-value=33 Score=29.29 Aligned_cols=115 Identities=19% Similarity=0.331 Sum_probs=58.1
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHh-ccCCCCC----CCeEEEEEeCCCCCCCccccCCCCccc----
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ-MDGFDQT----VNVKVIMATNRADTLDPALLRPGRLDR---- 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~----~~v~vi~ttn~~~~ld~al~r~grf~~---- 84 (173)
-..||+|||..+-.. -..+++..+.+. +..+-++ -.|-||++||. +|...+ ..|+|-.
T Consensus 236 GGTLfLDEI~~mpl~----------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~--dL~~~v-~~G~FReDLyy 302 (464)
T COG2204 236 GGTLFLDEIGEMPLE----------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNR--DLEEEV-AAGRFREDLYY 302 (464)
T ss_pred CceEEeeccccCCHH----------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCc--CHHHHH-HcCCcHHHHHh
Confidence 368999999876421 112333333322 2222221 24789999984 344333 3366653
Q ss_pred ---eecCCCCCHHHH----HHHHHHHHccCCC----C-CcCCHHHHhcCC-CCC--CHHHHHHHHHHHHHHH
Q 030674 85 ---KIEFPLPDRRQK----RLVFQVCTAKMNL----S-DEVDLEDYVSRP-DKI--SAAEIAAICQEAGMHA 141 (173)
Q Consensus 85 ---~i~~~~p~~~~R----~~il~~~l~~~~~----~-~~~~~~~la~~t-~g~--s~~di~~l~~~a~~~a 141 (173)
++.+..|..-+| -.++++++++... . ..+.-+.++..+ ..| ..++|++++.+++..+
T Consensus 303 RLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 303 RLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred hhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 234455554444 4566666654321 1 223333343333 222 5577777777776554
No 342
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=63.13 E-value=21 Score=26.79 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 147 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tvii~sh~~~~~ 201 (225)
T PRK10247 147 SLIRNLQFMPKVLLLDEITS----------ALDESNKHNVNEIIHRY---VREQNIAVLWVTHDKDEI 201 (225)
T ss_pred HHHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEECChHHH
Confidence 34455567799999999542 33333344444454444 222244577777776654
No 343
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=63.12 E-value=19 Score=28.69 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=36.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||- ..+-+....+.+..++..+. .. +..+|.+|++.+.+.
T Consensus 149 la~aL~~~P~lllLDEP----------t~gLD~~~~~~l~~~l~~l~---~~-g~till~sH~l~e~~ 202 (306)
T PRK13537 149 LARALVNDPDVLVLDEP----------TTGLDPQARHLMWERLRSLL---AR-GKTILLTTHFMEEAE 202 (306)
T ss_pred HHHHHhCCCCEEEEeCC----------CcCCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 45555678999999993 34555555566666666652 22 567888888877654
No 344
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=63.06 E-value=17 Score=27.06 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 139 laral~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~---~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPFS----------ALDPLLREEMLALVKQL---CSERQRTLLMVTHHLSDA 192 (213)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 3344456799999999654 33333334444444443 223345677788776654
No 345
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=62.90 E-value=19 Score=26.57 Aligned_cols=54 Identities=13% Similarity=0.305 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 146 la~al~~~p~llllDEP~----------~~LD~~~~~~l~~~l~~~~---~~-~~tvi~~sh~~~~~~ 199 (213)
T cd03262 146 IARALAMNPKVMLFDEPT----------SALDPELVGEVLDVMKDLA---EE-GMTMVVVTHEMGFAR 199 (213)
T ss_pred HHHHHhcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 344445679999999944 3344444455555555553 22 345777888776553
No 346
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=62.84 E-value=16 Score=28.07 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=34.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.++
T Consensus 162 ~laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~l~---~~-g~tiiivsH~~~~~~ 216 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPT----------SALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 3445556679999999954 3344444455555655552 22 566788888777654
No 347
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=62.70 E-value=16 Score=28.35 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-|+++||--+ +-+......+..++..+ ....+..||.+|++++.+.
T Consensus 160 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 160 LARALILRPKVIIADEALA----------SLDMSMRSQLINLMLEL---QEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHHHHhCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHHcCcEEEEEeCCHHHHH
Confidence 4445566799999999553 33333344444444444 2232456777888776543
No 348
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=62.68 E-value=18 Score=26.79 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 147 laral~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~---~~-~~tiiivtH~~~~~~ 200 (214)
T cd03292 147 IARAIVNSPTILIADEPTG----------NLDPDTTWEIMNLLKKIN---KA-GTTVVVATHAKELVD 200 (214)
T ss_pred HHHHHHcCCCEEEEeCCCC----------cCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 4445566799999999543 333434455555555542 22 456778887766543
No 349
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.61 E-value=17 Score=28.30 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.||++||-- .+-+......+..++..+. ...+..+|.+|++++.+
T Consensus 171 lAral~~~p~illLDEPt----------~~LD~~~~~~l~~~l~~~~---~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 171 LARALAVDPDILLMDEAF----------SALDPLIRREMQDELLRLQ---AELQKTIVFITHDLDEA 224 (269)
T ss_pred HHHHHhcCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHH
Confidence 444556779999999944 3444444455555554442 22245677888776644
No 350
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=62.60 E-value=21 Score=26.45 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-++++||-- .+-+......+..++..+. . .+..+|.+|++++.+.
T Consensus 143 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~-~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 143 LARALVQDPDLLLLDEPF----------AGVDPKTQEDIYELLRELR---R-EGMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHHHH
Confidence 344445679999999944 3334444455555555542 2 2456788888766543
No 351
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=62.51 E-value=24 Score=27.38 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 153 laral~~~p~lllLDEP~~----------gLD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~ 206 (271)
T PRK13632 153 IASVLALNPEIIIFDESTS----------MLDPKGKREIKKIMVDL---RKTRKKTLISITHDMDEA 206 (271)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEEechhHH
Confidence 4445566799999999543 33333334444444444 222335677777777655
No 352
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.46 E-value=21 Score=25.62 Aligned_cols=54 Identities=20% Similarity=0.428 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ ... +..+|.+|++++.+.
T Consensus 106 laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~---~~~-g~tiii~th~~~~~~ 159 (173)
T cd03230 106 LAQALLHDPELLILDEPTS----------GLDPESRREFWELLREL---KKE-GKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHH---HHC-CCEEEEECCCHHHHH
Confidence 4455567899999999553 33333344444455444 222 345777777766443
No 353
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=62.45 E-value=26 Score=22.97 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=35.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 120 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 120 ~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
....++|++-...++.-|...|--.+...|+.+|+.+|+.
T Consensus 55 ~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 55 AEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred HHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 3357899999999999999999999999999999999985
No 354
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=62.32 E-value=19 Score=27.72 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 161 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTG----------GLDVSVQARLLDLLRGL---VRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 34455566799999999553 33333334444444443 2233567888888877654
No 355
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=62.29 E-value=18 Score=27.97 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-.. +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 153 ~laral~~~p~llllDEPt~----------gLD~~~~~~l~~~L~~l---~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTT----------WLDISHQIDLLELLSEL---NREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HHHHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34455567799999999653 33333344444454444 2222456788888877543
No 356
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=62.12 E-value=51 Score=27.91 Aligned_cols=66 Identities=12% Similarity=0.367 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
+..|.+.+....|.+++||-|-.++...-++..+.-...+.....+...-. ..+-.+++++....-
T Consensus 157 ~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKe 222 (456)
T COG1066 157 LEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKE 222 (456)
T ss_pred HHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEccc
Confidence 567888899999999999999999976544444443434444444444432 222235555544433
No 357
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=61.93 E-value=20 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . .+..+|.+|++++.+.
T Consensus 137 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~-~~~tii~~tH~~~~~~ 190 (208)
T cd03268 137 IALALLGNPDLLILDEPT----------NGLDPDGIKELRELILSLR---D-QGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHhcCCCEEEECCCc----------ccCCHHHHHHHHHHHHHHH---H-CCCEEEEEcCCHHHHH
Confidence 344445679999999954 3334444444455555543 2 2445777888776543
No 358
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=61.87 E-value=26 Score=25.23 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. + +..+|.+|++++.++
T Consensus 109 laral~~~p~~lllDEP~~----------~LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~~ 161 (178)
T cd03247 109 LARILLQDAPIVLLDEPTV----------GLDPITERQLLSLIFEVL----K-DKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHHH
Confidence 4455567799999999553 333333444445555442 2 346777888776553
No 359
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=61.85 E-value=22 Score=26.44 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 149 laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPT----------GNLDPELSRDIMRLFEEFN---RR-GTTVLVATHDINLVE 202 (216)
T ss_pred HHHHHhcCCCEEEEeCCC----------CcCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 444556679999999944 3334444444445555542 22 455788888776543
No 360
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.77 E-value=25 Score=25.99 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||-- .+-+....+.+..++..+. ......++|.+++..+.
T Consensus 129 laral~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~--~~~~~t~ii~~~h~~~~ 182 (202)
T cd03233 129 IAEALVSRASVLCWDNST----------RGLDSSTALEILKCIRTMA--DVLKTTTFVSLYQASDE 182 (202)
T ss_pred HHHHHhhCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHHH--HhCCCEEEEEEcCCHHH
Confidence 444555679999999944 3334444455555555542 11223445555554433
No 361
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=61.68 E-value=18 Score=27.14 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=33.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.++
T Consensus 135 laral~~~p~llllDEP~----------~~LD~~~~~~l~~~L~~~~---~~-~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPT----------NGLDPIGIQELRELIRSFP---EQ-GITVILSSHILSEVQ 188 (223)
T ss_pred HHHHHhcCCCEEEECCCc----------cCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHHHHH
Confidence 445556679999999954 3344444455555555542 22 456888888877654
No 362
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=61.63 E-value=21 Score=26.94 Aligned_cols=54 Identities=20% Similarity=0.404 Sum_probs=32.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 154 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tii~vsH~~~~~~ 207 (236)
T cd03219 154 IARALATDPKLLLLDEPA----------AGLNPEETEELAELIRELR---ER-GITVLLVEHDMDVVM 207 (236)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 444555679999999954 3334444455555555542 22 445788888776553
No 363
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=61.42 E-value=16 Score=28.36 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 161 ~laral~~~p~lllLDEPt~----------~LD~~~~~~~~~~l~~~---~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVS----------NLDLVLQAGVIRLLKKL---QQQFGTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------ccCHHHHHHHHHHHHHH---HHHcCcEEEEEECCHHHHH
Confidence 34455567899999999553 33333334444444444 2233456788888776554
No 364
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.34 E-value=29 Score=26.93 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+....+.+..++..+ ....+..+|.+|++++.+.
T Consensus 153 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~---~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 153 IAGVLALNPSVIILDEATS----------MLDPDARQNLLDLVRKV---KSEHNITIISITHDLSEAM 207 (269)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCchHHh
Confidence 4445566799999999653 33333344444455444 2233456777888777654
No 365
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=61.17 E-value=59 Score=24.90 Aligned_cols=65 Identities=29% Similarity=0.391 Sum_probs=44.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
+-...+..+|-+|++|. .++.. ++ -.|+..+.+-.....|++|-++|+.+-+-.+++- |-||+
T Consensus 38 a~~~i~~~~pDLILLDi---YmPd~----~G---------i~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~-Gv~DY 100 (224)
T COG4565 38 AKMIIEEFKPDLILLDI---YMPDG----NG---------IELLPELRSQHYPVDVIVITAASDMETIKEALRY-GVVDY 100 (224)
T ss_pred HHHHHHhhCCCEEEEee---ccCCC----cc---------HHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhc-Cchhh
Confidence 34445567898888864 44322 11 1466666544555679999999999999988854 78887
Q ss_pred ee
Q 030674 85 KI 86 (173)
Q Consensus 85 ~i 86 (173)
.|
T Consensus 101 Li 102 (224)
T COG4565 101 LI 102 (224)
T ss_pred ee
Confidence 65
No 366
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=61.07 E-value=20 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-.+ +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 157 laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTS----------ALDPELVGEVLNVIRRL---ASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHH
Confidence 3444456799999999653 23333334444444443 223356688888877654
No 367
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=61.04 E-value=18 Score=29.41 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=33.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 151 lAraL~~~p~iLlLDEPt----------s~LD~~~~~~l~~~L~~l---~~~~g~tiilvtH~~~~i~ 205 (343)
T PRK11153 151 IARALASNPKVLLCDEAT----------SALDPATTRSILELLKDI---NRELGLTIVLITHEMDVVK 205 (343)
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 444556679999999944 333444444444555444 2233566888888876543
No 368
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=60.94 E-value=17 Score=22.23 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.=+..++..|...+...++..|+.+|+..|++
T Consensus 42 ~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r 73 (75)
T PF00125_consen 42 YLLVEILEEAGNLARHAKRKTITPRDIQLAVR 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence 34556777788888888888999999999876
No 369
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=60.93 E-value=18 Score=27.76 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 149 laral~~~p~llllDEP~----------~~LD~~~~~~l~~~l~~l~---~~-~~tiii~tH~~~~~~ 202 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPT----------TYLDINHQVELMRLMRELN---TQ-GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEECCHHHHH
Confidence 444556679999999954 3344444455555555542 22 456888888877654
No 370
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.67 E-value=20 Score=28.24 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=33.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||--+ +-+....+.+..++..+. .. +..||.+|++++.+.
T Consensus 155 iA~aL~~~p~illLDEPt~----------gLD~~~~~~l~~~l~~l~---~~-g~til~vtHd~~~~~ 208 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTA----------GLDPKARIEMMQLFESIH---QS-GQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHHhCCCEEEEECCcc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 4444566799999999543 333444455555555553 22 556888888876553
No 371
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=60.66 E-value=22 Score=26.76 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 143 ~la~al~~~p~llllDEPt----------~~LD~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~~ 197 (232)
T cd03218 143 EIARALATNPKFLLLDEPF----------AGVDPIAVQDIQKIIKILK---DR-GIGVLITDHNVRETL 197 (232)
T ss_pred HHHHHHhcCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 3445556679999999944 3344444455555665553 22 456888888776443
No 372
>PRK11823 DNA repair protein RadA; Provisional
Probab=60.65 E-value=40 Score=28.55 Aligned_cols=27 Identities=15% Similarity=0.476 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATA 28 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~ 28 (173)
+..+++..+...|.+|+||.+-.+...
T Consensus 145 l~~i~~~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 145 LEAILATIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHHHHHHHHhhCCCEEEEechhhhccc
Confidence 356677777888999999999998754
No 373
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.65 E-value=18 Score=28.46 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=34.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.||++||--+ +-+......+..++..+ ....+..||.+|++.+.+.
T Consensus 156 laraL~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~l---~~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTA----------GLDPQSKRQVMRLLKSL---QTDENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHHHhCCCEEEEECCcc----------cCCHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHHHH
Confidence 4445567899999999553 33444445555555555 2233566888888776553
No 374
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=60.47 E-value=18 Score=27.94 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 161 laral~~~p~illLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVS----------NLDMVLQAVILELLRKL---QQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 4445566799999999543 33333334444444443 2222456888888776553
No 375
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=60.41 E-value=19 Score=27.54 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ..+.+..+|++|++++.+.
T Consensus 158 ~laral~~~p~vlllDEP~----------~~LD~~~~~~l~~~l~~~---~~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPT----------GGLDVSVQARLLDLLRGL---VRDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHHHhcCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 3444556679999999954 333343344444444443 2233556788888776544
No 376
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=60.34 E-value=48 Score=24.23 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=30.5
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..|-...|-++++||--+ +-+......+..++..+. .. +..+|.+|+++..+.
T Consensus 139 a~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTT----------ALDKAGVALLAGLLRAHL---AR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred HHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hC-CCEEEEEEccccccc
Confidence 344456799999999553 333333444455554442 22 345778888775443
No 377
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=60.27 E-value=46 Score=24.39 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=30.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
.+..|-...|.++++||--+ +-+....+.+..++..+ ... +..+|.+|++++
T Consensus 121 ~laral~~~p~illlDEP~~----------~LD~~~~~~l~~~l~~~---~~~-~~tiii~sh~~~ 172 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTS----------GLDSSSALQVMSLLRRL---ADT-GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHH---HhC-CCEEEEEecCch
Confidence 34445566799999999553 33333344444555544 223 455777777664
No 378
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.16 E-value=16 Score=27.75 Aligned_cols=55 Identities=22% Similarity=0.397 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. ...+..+|.+|++++.+.
T Consensus 142 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTS----------ALDPTSTEIIEELIVKLK---NKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HhCCCEEEEEeccHHHHH
Confidence 3444456799999999553 333333444445554442 222445777888776544
No 379
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.16 E-value=42 Score=24.51 Aligned_cols=51 Identities=16% Similarity=0.418 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++
T Consensus 119 la~al~~~p~vlllDEP~~----------~LD~~~~~~l~~~l~~~~---~~-~~tiiivtH~~~ 169 (192)
T cd03232 119 IGVELAAKPSILFLDEPTS----------GLDSQAAYNIVRFLKKLA---DS-GQAILCTIHQPS 169 (192)
T ss_pred HHHHHhcCCcEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---Hc-CCEEEEEEcCCh
Confidence 4555567799999999553 333333444455555442 22 456777887765
No 380
>COG3899 Predicted ATPase [General function prediction only]
Probab=60.10 E-value=56 Score=30.19 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=67.7
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC-CCCeEEEEEeCCCCCCCccccCCCCcccee
Q 030674 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDPALLRPGRLDRKI 86 (173)
Q Consensus 8 ~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~al~r~grf~~~i 86 (173)
.+....|-|+++||++=. +..+...+..++..+.-... .+.|.. ..+.. ..+....++.+.+ ..|
T Consensus 149 ~~~~~~plVi~leDlhWa-----------D~~SL~lL~~lm~~~~~~~~~~n~v~~-~h~~~-~~~~~~~~~~~~i-~~I 214 (849)
T COG3899 149 FTAEEHPLVIVLEDLHWA-----------DSASLKLLQLLMDRIAIGAYRDNEVLL-LHPLR-PTLGEILKSATNI-TTI 214 (849)
T ss_pred HHhccCCeEEEEeccccc-----------ChhHHHHHHHHHHhcchhhhhcccccc-CCCcc-chhhHHhhcCCce-eEE
Confidence 344555999999998832 11223444445544430011 112222 22222 2233333332222 579
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHH
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAG 138 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~ 138 (173)
.+.+.+..+-..++...+......+.-....+.++|.| .|-=+.+++.-..
T Consensus 215 ~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~G-nPfFi~e~lk~l~ 265 (849)
T COG3899 215 TLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKG-NPFFIEEFLKALY 265 (849)
T ss_pred ecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcC-CCccHHHHHHHHH
Confidence 99999999999999999887444433457788899998 7777777766443
No 381
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=59.54 E-value=28 Score=26.08 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=31.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..||.+|++++.+
T Consensus 157 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~---~~~~~~tii~~sH~~~~~ 210 (228)
T PRK10584 157 LARAFNGRPDVLFADEPT----------GNLDRQTGDKIADLLFSL---NREHGTTLILVTHDLQLA 210 (228)
T ss_pred HHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 344445679999999944 333444445555555544 222245677788876643
No 382
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=59.47 E-value=27 Score=30.55 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcc---cc-CCCCccc--ee
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPA---LL-RPGRLDR--KI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~a---l~-r~grf~~--~i 86 (173)
.| .|+|||+|. +-++.....+...+..+.. ... |++.|+.|.-.--+ +. ...--|. ..
T Consensus 454 ~p-tlIFDEVD~----------GIsG~~A~aVg~~L~~Ls~---~~Q--Vl~VTHlPQVAa~ad~H~~V~K~~~~~~T~s 517 (557)
T COG0497 454 TP-TLIFDEVDT----------GISGRVAQAVGKKLRRLSE---HHQ--VLCVTHLPQVAAMADTHFLVEKESEDGRTES 517 (557)
T ss_pred CC-eEEEecccC----------CCChHHHHHHHHHHHHHhc---Cce--EEEEecHHHHHhhhcceEEEEEecCCCceEE
Confidence 35 889999995 3344445566666666643 333 56667666532211 00 0000111 34
Q ss_pred cCCCCCHHHHHHHHHHHHccCC
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMN 108 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~ 108 (173)
.+...+.++|.+-+..++.+..
T Consensus 518 ~V~~L~~eeRveEiARMl~G~~ 539 (557)
T COG0497 518 RVRPLDKEERVEEIARMLGGSE 539 (557)
T ss_pred eeeeCCHhHHHHHHHHHhcCch
Confidence 5667777888877777776643
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=59.29 E-value=19 Score=26.05 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+....+.+..++..+. .. +..+|.+|++++.+.
T Consensus 115 la~al~~~p~llllDEP~----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~~ 168 (182)
T cd03215 115 LARWLARDPRVLILDEPT----------RGVDVGAKAEIYRLIRELA---DA-GKAVLLISSELDELL 168 (182)
T ss_pred HHHHHccCCCEEEECCCC----------cCCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 444445679999999954 3334444455555555552 22 456777787765443
No 384
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=59.16 E-value=24 Score=27.95 Aligned_cols=55 Identities=20% Similarity=0.446 Sum_probs=35.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||-- .+-+....+.+..++..+. .. +..||.+|++++.+.
T Consensus 134 ~la~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~~---~~-g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPT----------TGLDPRTRRAIWDYIRALK---EE-GVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHhcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHH---hC-CCEEEEECCCHHHHH
Confidence 3455556789999999933 4445544555555665552 22 456888888876554
No 385
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=59.09 E-value=25 Score=26.16 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchH-HHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADRE-VQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+.+++.+....|.++++||.-.-+ +.. ...+...++..+. . .+..+|.+|++++.+.
T Consensus 95 ~~iL~~~~~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~---~-~~~tiiivTH~~~~~~ 152 (199)
T cd03283 95 KEIVEKAKKGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLK---N-KNTIGIISTHDLELAD 152 (199)
T ss_pred HHHHHhccCCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHH---H-CCCEEEEEcCcHHHHH
Confidence 445555544579999999964211 111 1233344555553 1 2566888888876554
No 386
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=59.06 E-value=26 Score=27.40 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 155 laral~~~p~llllDEPt----------~gLD~~~~~~l~~~l~~l---~~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 155 IAGILAMRPECIIFDEPT----------AMLDPSGRREVVNTIKEL---NKKYGITIILITHYMEEAV 209 (280)
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEecChHHHh
Confidence 344446679999999954 333444444444555544 2233566888888877664
No 387
>PRK09183 transposase/IS protein; Provisional
Probab=58.99 E-value=19 Score=28.07 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=11.2
Q ss_pred cCCeEEEEcccccc
Q 030674 12 NAPAIIFIDEVDAI 25 (173)
Q Consensus 12 ~~P~il~ide~d~l 25 (173)
..|.+++|||++..
T Consensus 163 ~~~dlLiiDdlg~~ 176 (259)
T PRK09183 163 MAPRLLIIDEIGYL 176 (259)
T ss_pred cCCCEEEEcccccC
Confidence 45789999999764
No 388
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.88 E-value=21 Score=28.13 Aligned_cols=54 Identities=15% Similarity=0.358 Sum_probs=32.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ....+..||.+|++.+.+
T Consensus 155 iAraL~~~P~llllDEPt----------~gLD~~~~~~l~~~l~~l---~~~~g~tvi~vtHd~~~~ 208 (287)
T PRK13637 155 IAGVVAMEPKILILDEPT----------AGLDPKGRDEILNKIKEL---HKEYNMTIILVSHSMEDV 208 (287)
T ss_pred HHHHHHcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 445556789999999944 333343344445555544 223356688888876644
No 389
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=58.81 E-value=22 Score=26.97 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+. . +..+|.+|++++.+.
T Consensus 153 ~laral~~~p~~lllDEPt----------~~LD~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPV----------AGMTDEETEKTAELLKSLA---G--KHSVVVVEHDMEFVR 206 (242)
T ss_pred HHHHHHhcCCCEEEecCCc----------cCCCHHHHHHHHHHHHHHh---c--CCEEEEEECCHHHHH
Confidence 3444555679999999955 3344444455555555553 2 246888888877554
No 390
>PRK08116 hypothetical protein; Validated
Probab=58.78 E-value=7.2 Score=30.58 Aligned_cols=66 Identities=11% Similarity=0.182 Sum_probs=32.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC-CC----CCccccCCCCc---cc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA-DT----LDPALLRPGRL---DR 84 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~-~~----ld~al~r~grf---~~ 84 (173)
...+|+|||+...- .. ......+-.+++..- .++..+|.|||.+ +. ++..+.. |+ ..
T Consensus 178 ~~dlLviDDlg~e~--------~t-~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 178 NADLLILDDLGAER--------DT-EWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred CCCEEEEecccCCC--------CC-HHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 35699999985311 11 122222333433321 1233477788764 34 3455555 53 33
Q ss_pred eecCCCCCH
Q 030674 85 KIEFPLPDR 93 (173)
Q Consensus 85 ~i~~~~p~~ 93 (173)
.|.++-|+.
T Consensus 243 ~v~~~g~d~ 251 (268)
T PRK08116 243 PVENEGKSY 251 (268)
T ss_pred EEEeeCcCh
Confidence 456666663
No 391
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=58.77 E-value=23 Score=28.74 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=39.7
Q ss_pred HHHHHcCCeEEEEccccccccccc-C--CCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARF-D--AQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~-~--~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
...+...+.+|+||-+-++.+... . ..+.......+.++.++..|..+-...++.+|+|..-.+.
T Consensus 127 ~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~ 194 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREK 194 (321)
T ss_pred HHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceec
Confidence 344566799999999999986421 1 1111112233555666666666656668888888654443
No 392
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.55 E-value=23 Score=27.59 Aligned_cols=54 Identities=24% Similarity=0.420 Sum_probs=32.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..||.+|++++.+
T Consensus 155 ~la~al~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiiivsH~~~~~ 208 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTA----------GLDPKGRKELMTLFKKLH---QS-GMTIVLVTHLMDDV 208 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeccHHHH
Confidence 34455567799999999553 333444455555555542 22 45678888877644
No 393
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.16 E-value=24 Score=26.05 Aligned_cols=53 Identities=21% Similarity=0.403 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+
T Consensus 139 la~al~~~p~~lllDEP~----------~~LD~~~~~~~~~~l~~~~---~~-~~tii~~sH~~~~~ 191 (210)
T cd03269 139 FIAAVIHDPELLILDEPF----------SGLDPVNVELLKDVIRELA---RA-GKTVILSTHQMELV 191 (210)
T ss_pred HHHHHhcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHH
Confidence 445556679999999954 3333444445445555442 22 45678888876644
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=58.05 E-value=22 Score=27.56 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 144 laraL~~~p~lllLDEPt----------~~LD~~~~~~l~~~L~~~---~~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 144 LARALIHRPGLLLLDEPL----------GALDALTRIEMQDLIESL---WQQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 444555679999999954 333444444555555444 222245678888877654
No 395
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=58.05 E-value=24 Score=26.25 Aligned_cols=52 Identities=15% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
..|-...|.++++||-- .+-+......+..++..+. . .+..+|.+|++++.+
T Consensus 144 aral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~-~~~tiii~sH~~~~~ 195 (222)
T cd03224 144 ARALMSRPKLLLLDEPS----------EGLAPKIVEEIFEAIRELR---D-EGVTILLVEQNARFA 195 (222)
T ss_pred HHHHhcCCCEEEECCCc----------ccCCHHHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHH
Confidence 33445579999999954 3334444455555555542 2 245678888876643
No 396
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=57.95 E-value=42 Score=24.61 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=30.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++
T Consensus 145 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~ 195 (206)
T TIGR03608 145 LARAILKDPPLILADEPTG----------SLDPKNRDEVLDLLLELN---DE-GKTIIIVTHDPE 195 (206)
T ss_pred HHHHHHcCCCEEEEeCCcC----------CCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHH
Confidence 4445566799999999654 333334445555555542 22 445677777765
No 397
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=57.93 E-value=27 Score=26.54 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.|+++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 156 laral~~~p~illLDEPt~----------~LD~~~~~~l~~~l~~l~---~~-~~tiii~sH~~~~~~ 209 (248)
T PRK09580 156 ILQMAVLEPELCILDESDS----------GLDIDALKIVADGVNSLR---DG-KRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHHHcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 4445566799999999543 333433444455555542 22 456778888766443
No 398
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=57.80 E-value=26 Score=25.91 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 la~al~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPT----------GNLDPDLSERILDLLKRLN---KR-GTTVIVATHDLSLVD 201 (214)
T ss_pred HHHHHhCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 344445679999999954 3334444455555555542 22 446777787766544
No 399
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=57.56 E-value=25 Score=26.55 Aligned_cols=54 Identities=13% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.|+++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 la~al~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPS----------LGLAPIIIQQIFDTIEQLR---EQ-GMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHHhCCCEEEEcCcc----------ccCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCcHHHHH
Confidence 334445679999999954 3334444455555555542 22 445677787766443
No 400
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=57.47 E-value=18 Score=26.89 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=9.9
Q ss_pred CeEEEEccccccc
Q 030674 14 PAIIFIDEVDAIA 26 (173)
Q Consensus 14 P~il~ide~d~l~ 26 (173)
..+++|||+|+-+
T Consensus 159 ~p~~ilDEvd~~L 171 (220)
T PF02463_consen 159 SPFLILDEVDAAL 171 (220)
T ss_dssp -SEEEEESTTTTS
T ss_pred ccccccccccccc
Confidence 4588999999654
No 401
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.47 E-value=21 Score=28.02 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--. +-+......+..++..+ ..+.+..||.+|++++.+.
T Consensus 151 ~laraL~~~p~lLilDEPt~----------gLD~~~~~~l~~~l~~l---~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTA----------GLDPMGVSEIMKLLVEM---QKELGLTIIIATHDIDIVP 206 (283)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHHHH
Confidence 34455567899999999553 33343344444454444 2233456778888776554
No 402
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.34 E-value=22 Score=27.98 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||--+ +-+......+..++..+ ....+..||.+|++.+.+.
T Consensus 156 lAraL~~~P~llllDEPt~----------~LD~~~~~~l~~~L~~l---~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTA----------GLDPKGRKEMMEMFYKL---HKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 4445567899999999553 33333334444444444 3333566888888776543
No 403
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=57.24 E-value=21 Score=27.11 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 8 LAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 8 ~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.|-...|.++++||-.. +-+......+..++..+ ....+..+|.+|++++.+.
T Consensus 143 ral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~---~~~~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFG----------ALDAKVRKELRSWLRKL---HDEVHVTTVFVTHDQEEAM 195 (237)
T ss_pred HHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34455799999999553 33444445555555554 2232456777777776543
No 404
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=57.20 E-value=34 Score=25.43 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-.+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 150 laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 202 (221)
T cd03244 150 LARALLRKSKILVLDEATA----------SVDPETDALIQKTIREAF---K--DCTVLTIAHRLDTII 202 (221)
T ss_pred HHHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHhc---C--CCEEEEEeCCHHHHh
Confidence 3444456799999999653 333333455555555442 2 245777888776554
No 405
>PRK10908 cell division protein FtsE; Provisional
Probab=57.10 E-value=28 Score=25.97 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-++++||-- .+-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 laral~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (222)
T PRK10908 148 IARAVVNKPAVLLADEPT----------GNLDDALSEGILRLFEEFN---RV-GVTVLMATHDIGLIS 201 (222)
T ss_pred HHHHHHcCCCEEEEeCCC----------CcCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 444555679999999944 3333433444444555442 22 456788888776554
No 406
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=56.85 E-value=16 Score=33.34 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=43.9
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-----cccCCCCcccee
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP-----ALLRPGRLDRKI 86 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~-----al~r~grf~~~i 86 (173)
..|.+++|||+..++.. +.....+..++..+ .+.+..++.+|.+++++-. +++. -....|
T Consensus 626 gr~~ii~iDEaw~~l~~---------~~~~~~i~~~~kt~----RK~ng~~~~~TQs~~D~~~s~~~~~i~~--n~~t~I 690 (789)
T PRK13853 626 GRRFVMSCDEFRAYLLN---------PKFAAVVDKFLLTV----RKNNGMLILATQQPEHVLESPLGASLVA--QCMTKI 690 (789)
T ss_pred CCcEEEEEechhHHhCC---------HHHHHHHHHHHHHH----HHcCeEEEEecCCHHHHHcCchHHHHHH--hCCeEE
Confidence 46999999999888742 12234455555554 2345667788888776653 3444 467788
Q ss_pred cCCCCCH
Q 030674 87 EFPLPDR 93 (173)
Q Consensus 87 ~~~~p~~ 93 (173)
.+|.|..
T Consensus 691 ~Lpn~~a 697 (789)
T PRK13853 691 FYPSPTA 697 (789)
T ss_pred EcCCccc
Confidence 8888863
No 407
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=56.78 E-value=28 Score=26.48 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 155 IARALAMRPEVILFDEPTS----------ALDPELVGEVLNTIRQLA---QE-KRTMVIVTHEMSFAR 208 (250)
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 3444456799999999553 333333444555555442 22 445777788766543
No 408
>PRK10263 DNA translocase FtsK; Provisional
Probab=56.71 E-value=12 Score=35.90 Aligned_cols=74 Identities=14% Similarity=0.390 Sum_probs=49.9
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC--CCCccccCCCCccceecCCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~~p~ 92 (173)
.||+|||+..|+... .++ +..++..|-..-..-+|-+|.+|.+|+ .|+..++. -|...|-|..-+
T Consensus 1142 IVVIIDE~AdLm~~~-------~ke----vE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS 1208 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 1208 (1355)
T ss_pred EEEEEcChHHHHhhh-------hHH----HHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHh--hccceEEEEcCC
Confidence 589999998887421 111 223333333333455899999999986 57766766 677788888888
Q ss_pred HHHHHHHHH
Q 030674 93 RRQKRLVFQ 101 (173)
Q Consensus 93 ~~~R~~il~ 101 (173)
..+-..||.
T Consensus 1209 ~~DSrtILd 1217 (1355)
T PRK10263 1209 KIDSRTILD 1217 (1355)
T ss_pred HHHHHHhcC
Confidence 777777774
No 409
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=56.49 E-value=33 Score=25.65 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. ..+|.+|++++.+
T Consensus 152 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~--~tii~~sH~~~~~ 203 (227)
T cd03260 152 LARALANEPEVLLLDEPT----------SALDPISTAKIEELIAELK---KE--YTIVIVTHNMQQA 203 (227)
T ss_pred HHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHh---hC--cEEEEEeccHHHH
Confidence 334445679999999954 3334444455555555542 22 5578888877654
No 410
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.44 E-value=22 Score=27.48 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. ...+..+|.+|++++.++
T Consensus 161 laral~~~p~vllLDEP~~----------~LD~~~~~~l~~~l~~l~---~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCF----------GLDPIASMKVESLIQSLR---LRSELTMVIVSHNLHQVS 215 (261)
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHH---HhCCCEEEEEECCHHHHH
Confidence 3344456799999999543 333333444444444442 122456777888777654
No 411
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=56.43 E-value=25 Score=27.48 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+....+.+..++..+ ....+..+|.+|++.+.+
T Consensus 150 ~lAral~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~~l---~~~~g~tilivtH~~~~~ 204 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATS----------MLDPEGRLELIKTIKGI---RDDYQMTVISITHDLDEV 204 (279)
T ss_pred HHHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 34555567899999999543 33333334444444444 233356688888877655
No 412
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.29 E-value=42 Score=29.29 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=40.5
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCcccee-------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKI------- 86 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i------- 86 (173)
|.++++||.++-+ +......+..++..+. . +.-||++|+++..+. ..|+++
T Consensus 463 ~~~lilDEp~~gl----------d~~~~~~~~~~l~~l~---~--~~~vi~iTH~~~~~~-------~ad~~~~l~k~~~ 520 (563)
T TIGR00634 463 VTTLIFDEVDVGV----------SGETAQAIAKKLAQLS---E--RHQVLCVTHLPQVAA-------HADAHFKVEKEGL 520 (563)
T ss_pred CCEEEEECCCCCC----------CHHHHHHHHHHHHHHh---c--CCEEEEEEChHHHHH-------hcCeEEEEEEccC
Confidence 5899999988644 2233344455555553 1 355788888776442 222223
Q ss_pred ------cCCCCCHHHHHHHHHHHHcc
Q 030674 87 ------EFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 87 ------~~~~p~~~~R~~il~~~l~~ 106 (173)
.+...+.++|.+-+..++.+
T Consensus 521 ~~~t~s~i~~L~~~~r~~EiArml~G 546 (563)
T TIGR00634 521 DGRTATRVRPLSGEERVAELARMLAG 546 (563)
T ss_pred CCcEEEEEEECCccHHHHHHHHHhCC
Confidence 33345666666666666544
No 413
>PF13175 AAA_15: AAA ATPase domain
Probab=56.29 E-value=42 Score=27.34 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=27.2
Q ss_pred EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 16 IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 16 il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
|++|||=|..+ +...++.+...+..+ ....++=||.||++|.
T Consensus 372 illidEPE~~L----------Hp~~q~~~~~~L~~~---~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 372 ILLIDEPELHL----------HPQAQRKFIDFLKKL---SKNNNIQIIITTHSPF 413 (415)
T ss_pred EEEEeCccccC----------CHHHHHHHHHHHHHH---hccCCCEEEEECCChh
Confidence 99999977654 343344444444443 3345667999999885
No 414
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=56.28 E-value=62 Score=23.02 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=28.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
.+..|-...|.++++||--+ +-+....+.+..++..+ +..+|.+|++++
T Consensus 101 ~laral~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATS----------ALDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 34445566799999999553 23333334444444433 245777887764
No 415
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=56.22 E-value=12 Score=28.16 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=37.3
Q ss_pred HHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 9 AKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 9 A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.... .|.+|+||-+-.++...... ........+.+..++..|..+....++.||.|.......
T Consensus 110 l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~~ 173 (235)
T cd01123 110 LIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARP 173 (235)
T ss_pred HhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeecC
Confidence 3445 78999999999986421111 111122235566677777666566678888776544433
No 416
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=56.19 E-value=30 Score=26.88 Aligned_cols=53 Identities=19% Similarity=0.346 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+ ... +..||.+|++++.+
T Consensus 153 laraL~~~p~llllDEPt----------~~LD~~~~~~l~~~L~~~---~~~-g~tviivsH~~~~~ 205 (272)
T PRK15056 153 LARAIAQQGQVILLDEPF----------TGVDVKTEARIISLLREL---RDE-GKTMLVSTHNLGSV 205 (272)
T ss_pred HHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHH---HhC-CCEEEEEeCCHHHH
Confidence 444555679999999954 333444445555555554 222 45577888877654
No 417
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=55.92 E-value=71 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=29.7
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC-CCCeEEEEEeCCCCCCCc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDP 74 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~ 74 (173)
..|.++++||-..-+ +......+..++..+- .. .....||.+|++++.+..
T Consensus 130 ~~p~illlDEP~~gl----------D~~~~~~~~~~l~~~~--~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 130 MESPFRCLDEFDVFM----------DMVNRKISTDLLVKEA--KKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred cCCCEEEecCccccc----------CHHHHHHHHHHHHHHH--hcCCCcEEEEEECCccccccc
Confidence 579999999977544 2222233333333331 22 234568888888887763
No 418
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=55.87 E-value=29 Score=26.47 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=32.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 156 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~~ 209 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTS----------ALDPISTLKIEELIQELK---K--DYTIVIVTHNMQQAS 209 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEEeCHHHHH
Confidence 34445566799999999553 333444455555655552 2 245777888776544
No 419
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=55.83 E-value=30 Score=25.69 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 147 laral~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~~tH~~~~~~ 200 (218)
T cd03266 147 IARALVHDPPVLLLDEPTT----------GLDVMATRALREFIRQLR---AL-GKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHhcCCCEEEEcCCCc----------CCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 4445566799999999553 334444455555555542 22 446778887766443
No 420
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=55.80 E-value=30 Score=26.02 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+....+.+..++..+. .. +..+|.+|++++.+.
T Consensus 153 laral~~~p~llllDEP~~----------gLD~~~~~~~~~~l~~~~---~~-~~tiii~sH~~~~~~ 206 (224)
T cd03220 153 FAIATALEPDILLIDEVLA----------VGDAAFQEKCQRRLRELL---KQ-GKTVILVSHDPSSIK 206 (224)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 4444456799999999553 333333444444444442 22 446788888766554
No 421
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.78 E-value=28 Score=27.01 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 147 laraL~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~~-g~tii~vtH~~~~~~ 200 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTA----------GLDPAGRTQMIAIIRRIV---AQ-GNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHHH
Confidence 4445567799999999543 334444445555555542 22 345777888776553
No 422
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.75 E-value=15 Score=27.76 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=30.4
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (173)
++.+.|-+|+||.+..+.... ..... ...+..++..|..+....++.+|+++.
T Consensus 119 ~~~~~~~~vvID~l~~l~~~~----~~~~~--~~~~~~~~~~L~~la~~~~~~ii~~~q 171 (242)
T cd00984 119 KKEHGLGLIVIDYLQLMSGSK----KKGNR--QQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHhcCCCEEEEcCchhcCCCC----CCCCH--HHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 345578999999999876322 11111 123444555555444455666777664
No 423
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=55.73 E-value=37 Score=25.89 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=31.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+. .+ +..+|.+|++++.+
T Consensus 162 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~~-g~tii~~tH~~~~~ 214 (252)
T CHL00131 162 ILQMALLDSELAILDETD----------SGLDIDALKIIAEGINKLM---TS-ENSIILITHYQRLL 214 (252)
T ss_pred HHHHHHcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---hC-CCEEEEEecCHHHH
Confidence 344455679999999954 3344444455555555542 22 45677888877643
No 424
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=55.73 E-value=38 Score=25.55 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ . . +..+|.+|++++.+.
T Consensus 150 la~al~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~---~-~-g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATS----------ALDAESEKLVQEALDRA---M-K-GRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHh---c-C-CCEEEEEeCCHHHHh
Confidence 3444456799999999553 33333334444455444 3 2 455777787776553
No 425
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.65 E-value=29 Score=27.20 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ....+..||.+|++.+.+
T Consensus 154 laral~~~P~llllDEPt----------~gLD~~~~~~l~~~l~~l---~~~~g~tvli~tH~~~~~ 207 (282)
T PRK13640 154 IAGILAVEPKIIILDEST----------SMLDPAGKEQILKLIRKL---KKKNNLTVISITHDIDEA 207 (282)
T ss_pred HHHHHHcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 445556789999999944 333444444555555544 222245677777776654
No 426
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.65 E-value=30 Score=26.93 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ... +..+|.+|++++.+.
T Consensus 147 ~laral~~~p~llllDEPt~----------gLD~~~~~~l~~~l~~l---~~~-~~til~vtH~~~~~~ 201 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTS----------GLDPMGASQIMKLLYDL---NKE-GITIIISTHDVDLVP 201 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHH---HHC-CCEEEEEecCHHHHH
Confidence 34455567799999999543 33343445555555554 222 566888888777554
No 427
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=55.60 E-value=34 Score=27.13 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=35.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+....+.+..++..+. . +..+|.+|++++.+.
T Consensus 143 ~la~al~~~p~lliLDEPt----------~gLD~~~~~~l~~~l~~~~---~--~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPT----------TGLDPNQLVEIRNVIKNIG---K--DKTIILSTHIMQEVE 196 (301)
T ss_pred HHHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHHH
Confidence 3556667789999999944 4444544555555555552 2 256888888877554
No 428
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=55.55 E-value=18 Score=33.51 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=56.6
Q ss_pred HHHHHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
++.+...+.. ....||+|||++-+.+..++ .+ ..... .+|..+ ...+++-+|+||..-+ .=||+
T Consensus 268 lk~l~k~v~~~~~gvILfigelh~lvg~g~~--~~----~~d~~-nlLkp~---L~rg~l~~IGatT~e~Y~k~iekdPa 337 (898)
T KOG1051|consen 268 LKELLKEVESGGGGVILFLGELHWLVGSGSN--YG----AIDAA-NLLKPL---LARGGLWCIGATTLETYRKCIEKDPA 337 (898)
T ss_pred HHHHHHHHhcCCCcEEEEecceeeeecCCCc--ch----HHHHH-HhhHHH---HhcCCeEEEecccHHHHHHHHhhCcc
Confidence 4555666653 34679999999999976533 11 11111 122221 2333477888887433 35899
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHcc
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
+-+ ||+. +.++.|+.+.-..+|+..-.+
T Consensus 338 lEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 338 LER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred hhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 999 9986 567888877656666655444
No 429
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=55.54 E-value=27 Score=26.48 Aligned_cols=54 Identities=13% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-.+ +-+......+..++..+. .. +..+|.+|++++.++
T Consensus 147 la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 200 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTS----------ALDPELRHEVLKVMQDLA---EE-GMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 4445556799999999653 333333444445555542 22 455778888776554
No 430
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.49 E-value=31 Score=26.87 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+......+..++..+ .. .+..+|.+|++++.+
T Consensus 146 ~laral~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~l---~~-~g~til~~tH~~~~~ 199 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTS----------MLDPDSGIAVLERIKKL---HE-KGKTIVYITHNLEEL 199 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---Hh-CCCEEEEEecCHHHH
Confidence 34555567899999999543 33333344444455444 22 256688888887765
No 431
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=55.46 E-value=35 Score=25.71 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ .. +..+|.+|++++.+
T Consensus 149 laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~--~~tiii~sH~~~~~ 200 (237)
T cd03252 149 IARALIHNPRILIFDEATS----------ALDYESEHAIMRNMHDI---CA--GRTVIIIAHRLSTV 200 (237)
T ss_pred HHHHHhhCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHh---cC--CCEEEEEeCCHHHH
Confidence 4445566799999999553 33333344444455444 22 45688888887765
No 432
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=55.44 E-value=25 Score=28.65 Aligned_cols=55 Identities=11% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 141 alAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~L~~l---~~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPL----------AALDDPRKYEILPYLERL---HAEFGIPILYVSHSLQEV 195 (354)
T ss_pred HHHHHHHcCCCEEEEcCCC----------cCCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHH
Confidence 3445556679999999954 333443444444454444 223245678888877654
No 433
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.37 E-value=20 Score=27.03 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-.. +-+......+..++..+ ....+..+|.+|++++.+
T Consensus 141 laral~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~---~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 141 IARALVNEPKVLLLDEPLG----------ALDLKLRKDMQLELKRL---QKELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHHHH
Confidence 4445556799999999553 34444445555555444 233245677777777654
No 434
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.34 E-value=38 Score=25.47 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+ .. +..+|.+|++++.+.
T Consensus 148 la~aL~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~---~~--~~tiii~sh~~~~~~ 200 (236)
T cd03253 148 IARAILKNPPILLLDEATS----------ALDTHTEREIQAALRDV---SK--GRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHh---cC--CCEEEEEcCCHHHHH
Confidence 3444456799999999553 33333334444444444 22 456777888776653
No 435
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=55.21 E-value=35 Score=25.62 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=31.6
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
...|++++|||+-.-. ...+....+..++..+-. .+..+..+|++|++.+.+....
T Consensus 106 ~~~~slvllDE~~~gt---------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEFGKGT---------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccccCCC---------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHhhh
Confidence 3569999999976422 111122444445555421 1123457888888877665544
No 436
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=55.16 E-value=30 Score=28.07 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHcCCeEEEEccccccccccc-CC--CCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 8 LAKENAPAIIFIDEVDAIATARF-DA--QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 8 ~A~~~~P~il~ide~d~l~~~~~-~~--~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.++...+.+|+||-+-++.+... .. .+.......+.++.++..|..+-...++.+|.|..-.+.+
T Consensus 128 li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 128 LVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 34566799999999999986421 11 1111122235556666666655556678888876544443
No 437
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=55.13 E-value=35 Score=24.47 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=31.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+
T Consensus 106 ~la~al~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 159 (173)
T cd03246 106 GLARALYGNPRILVLDEPNS----------HLDVEGERALNQAIAALK---AA-GATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHhcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 34455567799999999543 333433444445555442 22 45577777766543
No 438
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=55.03 E-value=28 Score=25.12 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHHHH-cCCeEEEEccccccccc
Q 030674 2 VRDVFRLAKE-NAPAIIFIDEVDAIATA 28 (173)
Q Consensus 2 l~~if~~A~~-~~P~il~ide~d~l~~~ 28 (173)
++.+.+.++. +.|.+|+||.+..+...
T Consensus 129 ~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 129 LEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 3566777777 67999999999999864
No 439
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.00 E-value=30 Score=27.17 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=33.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||-- .+-+......+..++..+ ... +..||.+|++.+.+.
T Consensus 155 ~laral~~~p~lLlLDEPt----------~gLD~~~~~~l~~~l~~l---~~~-g~tvlivsH~~~~~~ 209 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPA----------AGLDPEGRKEMMQLFKDY---QKA-GHTVILVTHNMDDVA 209 (287)
T ss_pred HHHHHHHcCCCEEEEECCC----------CCCCHHHHHHHHHHHHHH---HhC-CCEEEEEeCCHHHHH
Confidence 3455556789999999943 334444445555555554 222 556777887766543
No 440
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=54.93 E-value=48 Score=22.62 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
|..+-...++.+|...+-..++..|+.+|+.-|++....
T Consensus 30 ~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 30 FAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 566777888899988888888999999999999987665
No 441
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=54.75 E-value=69 Score=24.85 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=47.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+++|++||+-. . ... .+.+..+.+.- ..-++-+|..+...-.+|+.++. -.+..+-++ -+
T Consensus 98 ~~~LiIlDD~~~----~----~~k----~~~l~~~~~~g----RH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s 158 (241)
T PF04665_consen 98 PRFLIILDDLGD----K----KLK----SKILRQFFNNG----RHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NS 158 (241)
T ss_pred CCeEEEEeCCCC----c----hhh----hHHHHHHHhcc----cccceEEEEEeeecccCCHHHhh--cceEEEEec-Cc
Confidence 378999999631 0 001 13344444322 23368899999999999999987 788877665 45
Q ss_pred HHHHHHHHHHHH
Q 030674 93 RRQKRLVFQVCT 104 (173)
Q Consensus 93 ~~~R~~il~~~l 104 (173)
......+++.+.
T Consensus 159 ~~dl~~i~~~~~ 170 (241)
T PF04665_consen 159 KRDLENIYRNMN 170 (241)
T ss_pred HHHHHHHHHhcc
Confidence 666666666553
No 442
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=54.67 E-value=37 Score=25.21 Aligned_cols=53 Identities=21% Similarity=0.466 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . ...+|.+|++++.+.
T Consensus 144 la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~~ 196 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTS----------GLDPASRRAIWDLILEVR---K--GRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHhcCCCEEEECCCCC----------CCCHHHHHHHHHHHHHHh---c--CCEEEEEcCCHHHHH
Confidence 3444456799999999553 333433445555555542 2 256888888877554
No 443
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=54.27 E-value=37 Score=21.13 Aligned_cols=35 Identities=14% Similarity=-0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.-+..+...+...+-..++..++..|+..|++..-
T Consensus 38 ~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~g 72 (77)
T smart00576 38 SYIQELGRTAHSYAELAGRTEPNLGDVVLALENLG 72 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 44677777777777777778899999999998754
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=54.21 E-value=25 Score=27.64 Aligned_cols=64 Identities=17% Similarity=0.366 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC-----
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR----- 78 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r----- 78 (173)
.++..++.+.|-+|++||.- . ...+..++..+. .+..+|+||+.+ .+.....|
T Consensus 185 ~~~~~i~~~~P~villDE~~------------~----~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~ 242 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIG------------R----EEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKE 242 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCC------------c----HHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHH
Confidence 35667777899999999942 0 122344444442 256688888754 34334333
Q ss_pred ---CCCccceecCC
Q 030674 79 ---PGRLDRKIEFP 89 (173)
Q Consensus 79 ---~grf~~~i~~~ 89 (173)
.+-|++.+-+.
T Consensus 243 l~~~~~~~r~i~L~ 256 (270)
T TIGR02858 243 LIENEAFERYVVLS 256 (270)
T ss_pred HHhcCceEEEEEEe
Confidence 34566666553
No 445
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=54.16 E-value=38 Score=25.24 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=29.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
+..|-...|.++++||--. +-+......+..++..+ ..+.+..+|.+|++.+
T Consensus 152 laral~~~p~illlDEP~~----------~LD~~~~~~l~~~l~~~---~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTA----------ALDSKSGRDVVELMQKL---AREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHhcCCCEEEEeCCCC----------cCCHHHHHHHHHHHHHH---HHHcCCEEEEEeCCHH
Confidence 4444456799999999654 33333334444444443 2222456777777654
No 446
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.14 E-value=25 Score=26.66 Aligned_cols=56 Identities=21% Similarity=0.228 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ..+.+..+|.+|++++.++
T Consensus 139 ~laral~~~p~llllDEPt----------~gLD~~~~~~l~~~l~~~---~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 139 AIARALVVNPKILLLDEPF----------SALDVRTKEKLREELKKI---RKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHHHcCCCEEEECCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEecCHHHHH
Confidence 3445556679999999954 333444445555555554 2232456777787766543
No 447
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=54.02 E-value=45 Score=23.20 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
..|-...|.++++||-..- -+......+..++..+ . ..++.+|++++.+
T Consensus 82 aral~~~p~illlDEP~~~----------LD~~~~~~l~~~l~~~---~----~til~~th~~~~~ 130 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNH----------LDLESIEALEEALKEY---P----GTVILVSHDRYFL 130 (144)
T ss_pred HHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHc---C----CEEEEEECCHHHH
Confidence 4444567999999996532 3333334444444444 1 2577788776654
No 448
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=54.01 E-value=28 Score=28.11 Aligned_cols=55 Identities=20% Similarity=0.415 Sum_probs=33.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.+|++||-- .+-+......+..++..+ ....+..+|.+|++.+.+
T Consensus 168 ~iArAL~~~P~llilDEPt----------s~LD~~~~~~i~~lL~~l---~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 168 MIAIALANQPRLLIADEPT----------NAMEPTTQAQIFRLLTRL---NQNNNTTILLISHDLQML 222 (330)
T ss_pred HHHHHHHCCCCEEEEeCCC----------CcCCHHHHHHHHHHHHHH---HHhcCCEEEEEECCHHHH
Confidence 4455666789999999944 233333334444444444 333456788888876644
No 449
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=53.94 E-value=27 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+- -+......+..++..+ ....+..+|.+|++.+.+.
T Consensus 126 iaraL~~~p~llllDEPt~~----------LD~~~~~~l~~~l~~~---~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 126 IAACLSKDADIYLLDEPSAY----------LDVEQRLMASKVIRRF---AENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHHHHhcCCCEEEEeCCccc----------CCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 44455667999999995533 3333334444444444 2223456888888766443
No 450
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.87 E-value=36 Score=25.92 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=32.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|-++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 152 ~laral~~~p~lllLDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~tH~~~~~~ 205 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTS----------ALDPISSGVIEELLKELS---H--NLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHh---C--CCEEEEEecCHHHHH
Confidence 34555567899999999653 333333444445555442 2 346778888776554
No 451
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=53.76 E-value=35 Score=26.14 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=33.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 148 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTN----------HLDVRAQLETLALVRELA---AT-GVTVVAALHDLNLAA 201 (256)
T ss_pred HHHHHhcCCCEEEEcCccc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHHH
Confidence 4445566799999999553 333434455555555552 22 456888888877653
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.72 E-value=36 Score=25.11 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=32.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|-++++||-- .+-+......+..++..+. . +..+|.+|++++.+.
T Consensus 140 ~la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~--~~tii~vsH~~~~~~ 193 (211)
T cd03264 140 GIAQALVGDPSILIVDEPT----------AGLDPEERIRFRNLLSELG---E--DRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHh---C--CCEEEEEcCCHHHHH
Confidence 3445556679999999944 3344444455555555553 2 246788888776543
No 453
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=53.72 E-value=36 Score=24.90 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++.+.+.
T Consensus 83 aral~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~~---~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 83 AAALLRNATFYLFDEPSA----------YLDIEQRLNAARAIRRL---SEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHHhcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHH---HHcCCCEEEEEECCHHHHH
Confidence 344456799999999543 33333334444444443 2222245777787766443
No 454
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=53.70 E-value=47 Score=24.22 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHcC--CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCcc
Q 030674 6 FRLAKENA--PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLD 83 (173)
Q Consensus 6 f~~A~~~~--P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~ 83 (173)
+..|-... |.++++||--+ +-+....+.+..++..+ .. .+..||.+|++++.+ + .+|
T Consensus 98 laral~~~~~p~llLlDEPt~----------~LD~~~~~~l~~~l~~~---~~-~g~tvIivSH~~~~~-----~--~~d 156 (176)
T cd03238 98 LASELFSEPPGTLFILDEPST----------GLHQQDINQLLEVIKGL---ID-LGNTVILIEHNLDVL-----S--SAD 156 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---Hh-CCCEEEEEeCCHHHH-----H--hCC
Confidence 44455667 99999999543 33333334444444443 22 245677788876543 2 355
Q ss_pred ceecC
Q 030674 84 RKIEF 88 (173)
Q Consensus 84 ~~i~~ 88 (173)
+.+.+
T Consensus 157 ~i~~l 161 (176)
T cd03238 157 WIIDF 161 (176)
T ss_pred EEEEE
Confidence 55555
No 455
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=53.48 E-value=31 Score=26.67 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=32.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+. .. ..||.+|++++.++
T Consensus 161 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~~---~~--~tvi~vtH~~~~~~ 214 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCS----------ALDPISTLRIEELMHELK---EQ--YTIIIVTHNMQQAA 214 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---cC--CEEEEEecCHHHHH
Confidence 34455556799999999542 333333444555555543 22 35777888777654
No 456
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.38 E-value=44 Score=25.09 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=30.7
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..|-...|.++++||--. +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 150 a~al~~~p~lllLDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 201 (234)
T cd03251 150 ARALLKDPPILILDEATS----------ALDTESERLVQAALERLM---K--NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHhc---C--CCEEEEEecCHHHHh
Confidence 344456799999999543 333333444455554442 2 345777888776654
No 457
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=53.22 E-value=33 Score=25.95 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=32.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+. .. +..+|.+|++++.+.
T Consensus 147 ~laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~-g~tiii~sH~~~~~~ 201 (241)
T PRK10895 147 EIARALAANPKFILLDEPFA----------GVDPISVIDIKRIIEHLR---DS-GLGVLITDHNVRETL 201 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHH---hc-CCEEEEEEcCHHHHH
Confidence 34455566799999999543 333333444445555442 22 446777777776443
No 458
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.18 E-value=37 Score=25.86 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 156 laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sh~~~~~~ 208 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTS----------ALDPIATHKIEELMEELK---K--NYTIVIVTHSMQQAR 208 (249)
T ss_pred HHHHHHcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEecCHHHHH
Confidence 3444556799999999553 333444455555666553 2 246788888766544
No 459
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.13 E-value=34 Score=26.18 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--. +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 160 laral~~~p~lllLDEP~~----------gLD~~~~~~l~~~l~~~~---~--~~tvii~sh~~~~~~ 212 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCS----------ALDPIATAKIEDLIEDLK---K--EYTVIIVTHNMQQAA 212 (253)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHh---h--CceEEEEEcCHHHHH
Confidence 3444456799999999543 333433444455555542 2 246788888776554
No 460
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=53.11 E-value=33 Score=25.92 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . .+..||.+|++++.+.
T Consensus 155 la~al~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~~~---~-~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 155 ILQMALLEPKLAILDEID----------SGLDIDALKIVAEGINRLR---E-PDRSFLIITHYQRLLN 208 (243)
T ss_pred HHHHHhcCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHH---H-CCcEEEEEEecHHHHH
Confidence 444555679999999954 3333433444455555542 2 2456778888777553
No 461
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.02 E-value=37 Score=25.87 Aligned_cols=53 Identities=15% Similarity=0.327 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 157 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~~ 209 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPAS----------ALDPISTAKVEELIHELK---K--DYTIVIVTHNMQQAA 209 (250)
T ss_pred HHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 4445566799999999543 334444455555555552 1 245777888776554
No 462
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.96 E-value=34 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ....+..+|.+|++.+.+.
T Consensus 150 ~lAraL~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~l---~~~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTS----------MLDPTGRQEIMRVIHEI---KEKYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHHH
Confidence 34445566799999999542 33343344444454444 2333456777888777653
No 463
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.95 E-value=23 Score=27.22 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r 78 (173)
|+.+.+.-+.+.-.+|+||-+..+.... + ...+..|++.+..+...++ +|..|-+|+.++.+...
T Consensus 112 L~~l~~~~k~~~~dViIIDSls~~~~~~-------~---~~~vl~fm~~~r~l~d~gK--vIilTvhp~~l~e~~~~ 176 (235)
T COG2874 112 LDLLLEFIKRWEKDVIIIDSLSAFATYD-------S---EDAVLNFMTFLRKLSDLGK--VIILTVHPSALDEDVLT 176 (235)
T ss_pred HHHHHhhHHhhcCCEEEEecccHHhhcc-------c---HHHHHHHHHHHHHHHhCCC--EEEEEeChhhcCHHHHH
Confidence 5556666677777899999999887432 1 1334445555555544434 44456679999988876
No 464
>PRK07914 hypothetical protein; Reviewed
Probab=52.89 E-value=1.2e+02 Score=24.27 Aligned_cols=108 Identities=6% Similarity=0.033 Sum_probs=59.0
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc----cccCCCCccceecCCCC-CHHHHHHHHHHHHccCCCC-CcCCHH
Q 030674 43 ILMELLNQMDGFDQTVNVKVIMATNRADTLDP----ALLRPGRLDRKIEFPLP-DRRQKRLVFQVCTAKMNLS-DEVDLE 116 (173)
Q Consensus 43 ~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~----al~r~grf~~~i~~~~p-~~~~R~~il~~~l~~~~~~-~~~~~~ 116 (173)
....+...+++..+. .++|+.+++.. -.. ++..-|- .++++.+| +..+....++..++..++. +.--+.
T Consensus 80 ~~~~l~~~l~~~~~~-t~lil~~~~~~--~~kk~~K~L~k~g~--~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~ 154 (320)
T PRK07914 80 AAALILSAAADLPPG-TVLVVVHSGGG--RAKALANQLRKLGA--EVHPCARITKAAERADFVRKEFRSLRVKVDDDTVT 154 (320)
T ss_pred HHHHHHHHHhCCCCC-eEEEEEecCCc--chhHHHHHHHHCCC--EEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 344566666654332 45555554432 222 2332221 26788778 8999999999888877655 222344
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 117 DYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 117 ~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
.++..+. .|+..+.++.-..+.-.+ ..||.+++.+.+..
T Consensus 155 ~L~~~~g----~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~~ 193 (320)
T PRK07914 155 ALLDAVG----SDLRELASACSQLVADTG-GAVDAAAVRRYHSG 193 (320)
T ss_pred HHHHHHC----ccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcCC
Confidence 4555443 355555444433332222 46888888776653
No 465
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.76 E-value=35 Score=25.97 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP 74 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~ 74 (173)
.+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+..
T Consensus 156 ~laral~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~~---~--~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCS----------ALDPISTTKIEDLIHKLK---E--DYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEECCHHHHHh
Confidence 34445566799999999553 333333455555555552 2 3467788887766553
No 466
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=52.57 E-value=35 Score=26.59 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=33.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ... +..+|.+|++++.+.
T Consensus 148 ~laraL~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~-g~tili~tH~~~~~~ 202 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMA----------YLDPRGQETLMEILDRL---HNQ-GKTVIVATHDVDLAA 202 (274)
T ss_pred HHHHHHHcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHH---HHC-CCEEEEEeCCHHHHH
Confidence 34555567899999999543 33343344444455444 223 456888888776553
No 467
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=52.57 E-value=31 Score=29.58 Aligned_cols=56 Identities=11% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+ ..+.+..||.+|++++.+.
T Consensus 178 ~iA~al~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~l---~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 178 VLARQLAKEPFLFLADEPTG----------TLDPQTAKLVHNALEEA---VKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHHHHHhcCCCEEEeeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCcEEEEEeCCHHHHH
Confidence 34555567899999999443 33333334444444443 2223456888888877554
No 468
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=52.37 E-value=61 Score=24.02 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||--+ +-+......+..++..+ ... ..+|.+|++++.
T Consensus 151 la~al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~---~~~--~tii~~sH~~~~ 201 (220)
T cd03245 151 LARALLNDPPILLLDEPTS----------AMDMNSEERLKERLRQL---LGD--KTLIIITHRPSL 201 (220)
T ss_pred HHHHHhcCCCEEEEeCccc----------cCCHHHHHHHHHHHHHh---cCC--CEEEEEeCCHHH
Confidence 3444456799999999543 33343344445555544 222 567778877653
No 469
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.35 E-value=41 Score=26.09 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . +..+|.+|++++.+.
T Consensus 165 laral~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~~ 217 (269)
T PRK14259 165 IARTIAIEPEVILMDEPC----------SALDPISTLKIEETMHELK---K--NFTIVIVTHNMQQAV 217 (269)
T ss_pred HHHHHhcCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHHH
Confidence 344445679999999954 3334444455555555553 2 245777887766543
No 470
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=52.15 E-value=39 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 160 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~--~~tvii~tH~~~~~~ 212 (253)
T PRK14242 160 IARALAVEPEVLLMDEPAS----------ALDPIATQKIEELIHELK---A--RYTIIIVTHNMQQAA 212 (253)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEEecHHHHH
Confidence 3444456799999999553 333434445555555552 2 246778888776553
No 471
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=51.97 E-value=7.6 Score=25.39 Aligned_cols=49 Identities=29% Similarity=0.232 Sum_probs=16.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCCC
Q 030674 117 DYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 117 ~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~ 165 (173)
+-+...+.+....|..++..|...|..++...++.+||.-++++-....
T Consensus 23 eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 23 ETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHH
Confidence 3334445567788999999999999999888899999999998765543
No 472
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=51.52 E-value=34 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.|.++++||--+ +-+......+..++..+ ....+..||.+|++++.+.
T Consensus 158 ~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~---~~~~~~tiii~sH~~~~~~ 205 (258)
T PRK13548 158 PPRWLLLDEPTS----------ALDLAHQHHVLRLARQL---AHERGLAVIVVLHDLNLAA 205 (258)
T ss_pred CCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEECCHHHHH
Confidence 689999999543 33343344445555544 2122456888888776543
No 473
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=51.48 E-value=68 Score=27.86 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=57.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHh-ccCCCCCC----CeEEEEEeCCCCCCCccccCCCCcccee---
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ-MDGFDQTV----NVKVIMATNRADTLDPALLRPGRLDRKI--- 86 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~----~v~vi~ttn~~~~ld~al~r~grf~~~i--- 86 (173)
.-+|+|||-.+-.. -..+++..+.+. ++.+-++. .|-||++||. +|-.++. -|+|-.-+
T Consensus 319 GTLFLDEIGelPL~----------lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNR--DL~~~V~-~G~FRaDLYyR 385 (550)
T COG3604 319 GTLFLDEIGELPLA----------LQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNR--DLEEMVR-DGEFRADLYYR 385 (550)
T ss_pred CeEechhhccCCHH----------HHHHHHHHHhhcceeecCCCceeEEEEEEEeccch--hHHHHHH-cCcchhhhhhc
Confidence 56888888654311 112344444332 44443322 3889999995 4444444 36664322
Q ss_pred ----cCCCCCHHHH----HHHHHHHHccC----CCC-CcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 030674 87 ----EFPLPDRRQK----RLVFQVCTAKM----NLS-DEV---DLEDYVSRPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 87 ----~~~~p~~~~R----~~il~~~l~~~----~~~-~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a 141 (173)
-+..|-.-+| --+.++|+++. ... ..+ -++.+.+..=-=..++|++++.+|+..|
T Consensus 386 LsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 386 LSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 2223333333 23334454432 221 111 1233333221127899999999999887
No 474
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.44 E-value=39 Score=25.96 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 165 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~l~---~--~~tiiivsH~~~~~~ 217 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTS----------ALDPISTARIEDLIMNLK---K--DYTIVIVTHNMQQAA 217 (258)
T ss_pred HHHHHHcCCCEEEEeCCCc----------ccCHHHHHHHHHHHHHHh---h--CCEEEEEECCHHHHH
Confidence 4444456799999999543 334444455555555552 2 356778888776553
No 475
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.43 E-value=35 Score=26.26 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . ...+|.+|++++.++
T Consensus 161 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~tH~~~~i~ 213 (259)
T PRK14260 161 IARALAIKPKVLLMDEPCS----------ALDPIATMKVEELIHSLR---S--ELTIAIVTHNMQQAT 213 (259)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHHH
Confidence 4444456799999999543 333333444444554442 2 256888888877665
No 476
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=51.39 E-value=38 Score=26.84 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . .+..+|.+|++++.+.
T Consensus 146 la~al~~~p~lllLDEPt----------~gLD~~~~~~l~~~l~~~~---~-~g~til~~sH~~~~~~ 199 (303)
T TIGR01288 146 LARALINDPQLLILDEPT----------TGLDPHARHLIWERLRSLL---A-RGKTILLTTHFMEEAE 199 (303)
T ss_pred HHHHHhcCCCEEEEeCCC----------cCCCHHHHHHHHHHHHHHH---h-CCCEEEEECCCHHHHH
Confidence 444556679999999943 3444544555555555552 2 2556888888877553
No 477
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=51.26 E-value=37 Score=25.49 Aligned_cols=53 Identities=23% Similarity=0.371 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|-++++||--+ +-+......+..++..+ ... +..+|.+|++++.+
T Consensus 124 laral~~~p~llilDEP~~----------~LD~~~~~~l~~~l~~~---~~~-~~tvii~sH~~~~~ 176 (223)
T TIGR03771 124 VARALATRPSVLLLDEPFT----------GLDMPTQELLTELFIEL---AGA-GTAILMTTHDLAQA 176 (223)
T ss_pred HHHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHc-CCEEEEEeCCHHHH
Confidence 4445566799999999553 33333344555555544 222 55678888876644
No 478
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=50.98 E-value=36 Score=26.39 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 174 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~l~---~--~~tiiivtH~~~~~~ 226 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCS----------ALDPIATAKVEELIDELR---Q--NYTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHh---c--CCeEEEEEcCHHHHH
Confidence 4445566799999999553 333444455555555552 2 245777888766553
No 479
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.98 E-value=41 Score=25.67 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. .. ..+|.+|++++.+.
T Consensus 159 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~~--~tii~vsH~~~~~~ 211 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTS----------ALDPISSTQIENMLLELR---DQ--YTIILVTHSMHQAS 211 (252)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHH---hC--CEEEEEECCHHHHH
Confidence 3444456799999999543 333444455555555552 21 45777888776554
No 480
>PRK13695 putative NTPase; Provisional
Probab=50.87 E-value=21 Score=25.57 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=37.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC--CCCCccccCCCCccc-eecCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA--DTLDPALLRPGRLDR-KIEFP 89 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~--~~ld~al~r~grf~~-~i~~~ 89 (173)
.|-+|++||+..+- ..+. .....+...++ .+..+|+++|.. ....+.+.+ +.|- .+++
T Consensus 96 ~~~~lllDE~~~~e--------~~~~---~~~~~l~~~~~-----~~~~~i~v~h~~~~~~~~~~i~~--~~~~~i~~~- 156 (174)
T PRK13695 96 EADVIIIDEIGKME--------LKSP---KFVKAVEEVLD-----SEKPVIATLHRRSVHPFVQEIKS--RPGGRVYEL- 156 (174)
T ss_pred CCCEEEEECCCcch--------hhhH---HHHHHHHHHHh-----CCCeEEEEECchhhHHHHHHHhc--cCCcEEEEE-
Confidence 58899999964321 1111 22223333332 134577777753 233445665 5553 3444
Q ss_pred CCCHHHHHHHHHHHHc
Q 030674 90 LPDRRQKRLVFQVCTA 105 (173)
Q Consensus 90 ~p~~~~R~~il~~~l~ 105 (173)
+.+.|.++....+.
T Consensus 157 --~~~~r~~~~~~~~~ 170 (174)
T PRK13695 157 --TPENRDSLPFEILN 170 (174)
T ss_pred --cchhhhhHHHHHHH
Confidence 56666677666554
No 481
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.85 E-value=47 Score=25.27 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+
T Consensus 157 laral~~~p~lllLDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~ 208 (250)
T PRK14247 157 IARALAFQPEVLLADEPTA----------NLDPENTAKIESLFLELK---K--DMTIVLVTHFPQQA 208 (250)
T ss_pred HHHHHhcCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHh---c--CCEEEEEeCCHHHH
Confidence 3444456799999999543 333333444445555542 2 35677888877654
No 482
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=50.78 E-value=30 Score=29.73 Aligned_cols=56 Identities=23% Similarity=0.416 Sum_probs=33.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||-- .+-+......+..++..+. ...+..||.+|++++.+.
T Consensus 166 ~iAraL~~~p~llllDEPt----------~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 166 MIAMALLTRPELLIADEPT----------TALDVSVQAQILQLLRELQ---QELNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHHHHhcCCCEEEEcCCC----------CccCHHHHHHHHHHHHHHH---HhcCCeEEEEcCcHHHHH
Confidence 3455556779999999944 3334444444444555442 222456778888776543
No 483
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.61 E-value=44 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 166 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~--~~tiiivtH~~~~~~ 218 (259)
T PRK14274 166 IARALATNPDVLLMDEPTS----------ALDPVSTRKIEELILKLK---E--KYTIVIVTHNMQQAA 218 (259)
T ss_pred HHHHHhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHh---c--CCEEEEEEcCHHHHH
Confidence 3444456799999999553 333333445555555552 2 246778888776544
No 484
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=50.34 E-value=34 Score=27.88 Aligned_cols=54 Identities=19% Similarity=0.452 Sum_probs=32.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+ ....++.+|.+|++.+.+
T Consensus 151 IARAL~~~P~iLLlDEPts----------~LD~~t~~~i~~lL~~l---~~~~g~tiiliTH~~~~v 204 (343)
T TIGR02314 151 IARALASNPKVLLCDEATS----------ALDPATTQSILELLKEI---NRRLGLTILLITHEMDVV 204 (343)
T ss_pred HHHHHHhCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHHH
Confidence 3445566799999999553 33333334444444444 333356788888877654
No 485
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=50.30 E-value=1.2e+02 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCeEEEEccccccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIA 26 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~ 26 (173)
+.|-..++.++.+|.++||+|.+=
T Consensus 168 ~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 168 NRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHhcCCceEEechhhhcC
Confidence 345566778899999999999753
No 486
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.20 E-value=40 Score=25.64 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 158 ~laral~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~---~--~~tiii~sH~~~~~~ 211 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTS----------ALDPASTARIEDLMTDLK---K--VTTIIIVTHNMHQAA 211 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 34455566799999999543 333334455555555552 2 256778888777555
No 487
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.15 E-value=36 Score=27.40 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||-- .+-+....+.+..++..+. .. +..+|.+|++++.+.
T Consensus 186 aiAraL~~~p~iLLLDEPt----------sgLD~~~~~~l~~~L~~l~---~~-g~TiiivtHd~~~~~ 240 (320)
T PRK13631 186 AIAGILAIQPEILIFDEPT----------AGLDPKGEHEMMQLILDAK---AN-NKTVFVITHTMEHVL 240 (320)
T ss_pred HHHHHHHcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 3445556789999999944 3334444455555555542 22 456888888776543
No 488
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=50.09 E-value=32 Score=28.00 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=32.1
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||-- .+-+......+..++..+ ....+..+|.+|++++.+
T Consensus 138 alaraL~~~p~llLLDEPt----------s~LD~~~~~~l~~~L~~l---~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPL----------ASLDLPRKRELLPYLERL---AREINIPILYVSHSLDEI 192 (352)
T ss_pred HHHHHHHcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCeEEEEecCHHHH
Confidence 3445556679999999944 333343344444444444 223345678888877644
No 489
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=50.03 E-value=45 Score=25.38 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+
T Consensus 159 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~---~--~~tii~~sH~~~~~ 210 (252)
T PRK14239 159 IARVLATSPKIILLDEPTS----------ALDPISAGKIEETLLGLK---D--DYTMLLVTRSMQQA 210 (252)
T ss_pred HHHHHhcCCCEEEEcCCcc----------ccCHHHHHHHHHHHHHHh---h--CCeEEEEECCHHHH
Confidence 3444456799999999543 333444455555555552 2 24577788776544
No 490
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.01 E-value=37 Score=23.80 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-..=+ +......+..++..+ ... +..+|.+|++++.++
T Consensus 91 l~~~l~~~~~i~ilDEp~~~l----------D~~~~~~l~~~l~~~---~~~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 91 LARALLLNPDLLLLDEPTSGL----------DPASRERLLELLREL---AEE-GRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHhcCCCEEEEeCCCcCC----------CHHHHHHHHHHHHHH---HHC-CCEEEEEeCCHHHHH
Confidence 344445679999999966433 333334444444444 222 345788888776655
No 491
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=50.00 E-value=56 Score=24.44 Aligned_cols=60 Identities=25% Similarity=0.411 Sum_probs=35.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (173)
..|.|+++||+-+-+- .. ..+.++.++-.+- ...++.|++.|++++. ++ | .++++|.+.+
T Consensus 150 ~~P~ILLLDE~TsALD-------~~---nkr~ie~mi~~~v---~~q~vAv~WiTHd~dq---a~-r--ha~k~itl~~ 209 (223)
T COG4619 150 FMPKILLLDEITSALD-------ES---NKRNIEEMIHRYV---REQNVAVLWITHDKDQ---AI-R--HADKVITLQP 209 (223)
T ss_pred cCCceEEecCchhhcC-------hh---hHHHHHHHHHHHh---hhhceEEEEEecChHH---Hh-h--hhheEEEecc
Confidence 4599999999875441 11 1244444443332 1347889999987764 22 3 5666666544
No 492
>PRK06526 transposase; Provisional
Probab=49.99 E-value=19 Score=28.05 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
.+.+|+|||++.+-.. ......+..+++...+ + + .+|.|||.+
T Consensus 159 ~~dlLIIDD~g~~~~~---------~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFE---------PEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCC---------HHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 4679999999865421 1222344445443321 1 2 277788865
No 493
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=49.95 E-value=43 Score=25.98 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+.
T Consensus 179 laral~~~p~lllLDEPt~----------gLD~~~~~~l~~~L~~~~---~--~~tiiivtH~~~~~~ 231 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTS----------ALDPISTLKIEELITELK---S--KYTIVIVTHNMQQAA 231 (272)
T ss_pred HHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHH---h--CCeEEEEeCCHHHHH
Confidence 4445556799999999543 333444455555555552 2 245777888776543
No 494
>PRK05629 hypothetical protein; Validated
Probab=49.93 E-value=1.1e+02 Score=24.46 Aligned_cols=107 Identities=7% Similarity=-0.054 Sum_probs=57.9
Q ss_pred HHHHHHhccCCCCCCCeEEEEEeCCCCCCCc---cccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCC-cCCHHHHh
Q 030674 44 LMELLNQMDGFDQTVNVKVIMATNRADTLDP---ALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSD-EVDLEDYV 119 (173)
Q Consensus 44 ~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~---al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~-~~~~~~la 119 (173)
...++..+....+ ..++||.+.+ .+.-.. .+. .....+++.+|...+....+...++..+..- .-.++.++
T Consensus 81 ~~~l~~~l~~~~~-~~~Lil~~~~-~~~~kk~~K~l~---k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~ 155 (318)
T PRK05629 81 TDLALSAAVDPSP-GIYLIIMHSG-GGRTKSMVPKLE---KIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALL 155 (318)
T ss_pred HHHHHHHHhCCCC-CeEEEEEcCC-cchhhHHHHHHH---hcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456666665433 2455555543 211111 232 2346678888888888888888888776652 22344555
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 120 SRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 120 ~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
..+. .|+..+.++--..+.- ....||.+|+...+..
T Consensus 156 ~~~g----~dl~~l~~EleKL~~~-~~~~It~e~V~~~v~~ 191 (318)
T PRK05629 156 EGVG----SDLRELASAISQLVED-TQGNVTVEKVRAYYVG 191 (318)
T ss_pred HHHC----ccHHHHHHHHHHHHhc-CCCCcCHHHHHHHhCC
Confidence 5443 3444443333323322 2346999998776544
No 495
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.67 E-value=44 Score=26.23 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=32.5
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+..|-...|.+|++||-- .+-+......+..++..+. . ...||.+|++++.+.
T Consensus 192 ~LAraL~~~p~lllLDEPt----------~gLD~~~~~~l~~~L~~~~---~--~~tvIivsH~~~~~~ 245 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPT----------SALDPKATAKIEDLIQELR---G--SYTIMIVTHNMQQAS 245 (286)
T ss_pred HHHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHHH
Confidence 3444556679999999954 3334444455555555553 2 245778888776653
No 496
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.64 E-value=38 Score=25.59 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (173)
.....|-...|.+++|||=- ..-++ .++...+.-|..+....+-+|+.|-
T Consensus 161 ~aIARaLameP~vmLFDEPT----------SALDP---ElVgEVLkv~~~LAeEgrTMv~VTH 210 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPT----------SALDP---ELVGEVLKVMQDLAEEGRTMVVVTH 210 (256)
T ss_pred HHHHHHHhcCCceEeecCCc----------ccCCH---HHHHHHHHHHHHHHHhCCeEEEEee
Confidence 34556667889999999933 22333 4555566666666555566666663
No 497
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.62 E-value=39 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. . ...+|.+|++++.++
T Consensus 159 laral~~~p~llllDEP~----------~gLD~~~~~~l~~~l~~~~---~--~~tiiivsH~~~~~~ 211 (252)
T PRK14256 159 IARTIAVKPEVILMDEPA----------SALDPISTLKIEELIEELK---E--KYTIIIVTHNMQQAA 211 (252)
T ss_pred HHHHHhcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---h--CCcEEEEECCHHHHH
Confidence 444555679999999954 3333444445555555552 2 135778888776554
No 498
>PHA00350 putative assembly protein
Probab=49.43 E-value=15 Score=30.64 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=40.1
Q ss_pred CeEEEEcccccccccccCCCC-------CCch--HHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 14 PAIIFIDEVDAIATARFDAQT-------GADR--EVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~-------~~~~--~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
-++|+|||+..+++.+..... ..+. ........+++.+.. ....+.=+|.+|.++..||..++. +.+.
T Consensus 82 gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~-HRH~G~DIiliTQ~~~~Id~~iR~--lvE~ 158 (399)
T PHA00350 82 GALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMR-HRHYNWDIILLTPNIRKIHSDIRA--MIEM 158 (399)
T ss_pred CCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHH-hcccCceEEEEeCCHHHhhHHHHH--hhhh
Confidence 379999999999987733100 0000 000001122222221 123356699999999999999986 6665
Q ss_pred ee
Q 030674 85 KI 86 (173)
Q Consensus 85 ~i 86 (173)
.+
T Consensus 159 ~~ 160 (399)
T PHA00350 159 TY 160 (399)
T ss_pred eE
Confidence 33
No 499
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=49.43 E-value=46 Score=25.58 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||--+ +-+......+..++..+. . +..+|.+|++++.+
T Consensus 167 laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~~---~--~~tiii~sH~~~~~ 218 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCS----------ALDPISTGRIEELITELK---Q--DYTVVIVTHNMQQA 218 (260)
T ss_pred HHHHHHCCCCEEEEcCCCc----------cCCHHHHHHHHHHHHHHh---c--CCeEEEEeCCHHHH
Confidence 4445556799999999543 334444455555555552 2 24577778776654
No 500
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=49.25 E-value=41 Score=25.47 Aligned_cols=54 Identities=17% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-.+ +-+......+..++..+ ..+ +..+|.+|++++.+.
T Consensus 152 laral~~~p~llilDEPt~----------~LD~~~~~~l~~~l~~~---~~~-~~tii~~sh~~~~~~ 205 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTA----------ALDPEITAQIVSIIREL---AET-GITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHHhcCCCEEEEcCCCC----------cCCHHHHHHHHHHHHHH---HHc-CCEEEEEeCCHHHHH
Confidence 3444456799999999553 33444445555555555 222 455777787776553
Done!