Query 030674
Match_columns 173
No_of_seqs 114 out of 1292
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 03:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.1E-40 3.7E-45 270.8 18.2 164 2-165 230-393 (405)
2 4b4t_M 26S protease regulatory 100.0 2.1E-40 7.3E-45 272.1 18.5 172 2-173 263-434 (434)
3 4b4t_I 26S protease regulatory 100.0 1.1E-39 3.8E-44 265.9 18.2 169 2-170 264-433 (437)
4 4b4t_L 26S protease subunit RP 100.0 5.5E-39 1.9E-43 263.9 19.8 164 2-165 263-426 (437)
5 4b4t_K 26S protease regulatory 100.0 3.3E-39 1.1E-43 264.8 18.4 172 2-173 254-428 (428)
6 4b4t_H 26S protease regulatory 100.0 2.9E-38 9.9E-43 259.7 17.3 162 2-163 291-452 (467)
7 3cf2_A TER ATPase, transitiona 100.0 2.4E-37 8.2E-42 269.4 4.9 172 2-173 559-756 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.3E-32 7.9E-37 238.2 14.7 164 2-168 286-466 (806)
9 2x8a_A Nuclear valosin-contain 100.0 2.6E-29 8.7E-34 196.0 16.5 163 2-167 92-270 (274)
10 2ce7_A Cell division protein F 100.0 2.1E-28 7.2E-33 203.4 18.3 163 2-164 97-259 (476)
11 3cf0_A Transitional endoplasmi 100.0 2.3E-28 7.8E-33 192.8 15.6 165 2-166 97-286 (301)
12 1lv7_A FTSH; alpha/beta domain 100.0 4.9E-27 1.7E-31 180.8 20.7 163 2-164 93-255 (257)
13 3h4m_A Proteasome-activating n 99.9 1.6E-26 5.5E-31 180.0 17.3 171 2-172 99-276 (285)
14 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.3E-26 4.6E-31 184.4 16.2 160 2-166 94-304 (322)
15 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-26 6.1E-31 192.8 16.0 164 2-165 112-275 (499)
16 1ixz_A ATP-dependent metallopr 99.9 7.8E-26 2.7E-30 173.8 17.2 157 2-158 97-253 (254)
17 3eie_A Vacuolar protein sortin 99.9 1.4E-26 4.6E-31 184.1 12.1 166 2-172 99-310 (322)
18 2qp9_X Vacuolar protein sortin 99.9 8.1E-26 2.8E-30 182.0 13.9 160 2-166 132-336 (355)
19 3hu3_A Transitional endoplasmi 99.9 1.3E-25 4.4E-30 187.6 13.7 163 2-167 286-465 (489)
20 1iy2_A ATP-dependent metallopr 99.9 1E-24 3.5E-29 169.8 17.7 157 2-158 121-277 (278)
21 2zan_A Vacuolar protein sortin 99.9 3.9E-25 1.3E-29 182.8 13.9 160 2-166 216-426 (444)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3.1E-25 1.1E-29 170.4 11.5 164 2-165 87-253 (262)
23 1ypw_A Transitional endoplasmi 99.9 1.3E-27 4.5E-32 209.8 -2.1 171 2-172 559-755 (806)
24 2r62_A Cell division protease 99.9 3.3E-26 1.1E-30 176.9 3.9 168 3-170 93-262 (268)
25 3d8b_A Fidgetin-like protein 1 99.9 9.7E-23 3.3E-27 164.1 12.7 165 2-171 165-345 (357)
26 3b9p_A CG5977-PA, isoform A; A 99.9 2.2E-22 7.4E-27 157.6 12.0 159 2-165 102-276 (297)
27 3vfd_A Spastin; ATPase, microt 99.9 2.6E-21 8.9E-26 157.3 13.2 159 2-165 196-369 (389)
28 1ypw_A Transitional endoplasmi 99.8 1.2E-18 3.9E-23 153.2 18.5 162 2-166 286-464 (806)
29 3aji_B S6C, proteasome (prosom 99.7 8.4E-18 2.9E-22 108.3 8.3 83 91-173 1-83 (83)
30 3t15_A Ribulose bisphosphate c 99.7 6.7E-19 2.3E-23 138.2 3.0 124 2-132 84-222 (293)
31 3kw6_A 26S protease regulatory 99.7 1.9E-17 6.5E-22 105.4 9.0 76 89-164 1-76 (78)
32 2krk_A 26S protease regulatory 99.7 1.8E-17 6.2E-22 107.3 8.3 78 87-164 7-84 (86)
33 3vlf_B 26S protease regulatory 99.7 5E-16 1.7E-20 101.0 8.8 75 92-166 2-76 (88)
34 2dzn_B 26S protease regulatory 99.6 4.2E-16 1.4E-20 100.1 5.1 80 94-173 1-82 (82)
35 2c9o_A RUVB-like 1; hexameric 99.4 2.4E-16 8.3E-21 130.5 -10.7 126 2-136 112-262 (456)
36 3uk6_A RUVB-like 2; hexameric 99.4 1.6E-12 5.4E-17 104.1 9.8 130 14-162 190-331 (368)
37 1d2n_A N-ethylmaleimide-sensit 99.3 4.5E-12 1.5E-16 97.8 5.6 151 2-167 113-270 (272)
38 3syl_A Protein CBBX; photosynt 99.2 1E-11 3.5E-16 97.1 6.7 130 3-144 123-265 (309)
39 3pfi_A Holliday junction ATP-d 99.2 1.4E-10 4.7E-15 91.8 12.8 136 12-164 105-257 (338)
40 2v1u_A Cell division control p 99.2 1.1E-10 3.8E-15 93.2 12.3 146 4-162 120-277 (387)
41 3m6a_A ATP-dependent protease 99.2 7.5E-12 2.6E-16 105.7 3.5 147 3-163 166-343 (543)
42 1hqc_A RUVB; extended AAA-ATPa 99.2 2.5E-10 8.4E-15 89.7 11.0 134 12-162 89-239 (324)
43 1njg_A DNA polymerase III subu 99.1 2.4E-10 8.2E-15 85.0 9.6 122 13-158 126-248 (250)
44 2z4s_A Chromosomal replication 99.1 1.5E-10 5.1E-15 95.5 9.0 135 13-163 194-334 (440)
45 1ofh_A ATP-dependent HSL prote 99.1 2.1E-10 7.1E-15 89.3 8.3 146 13-162 116-300 (310)
46 2chg_A Replication factor C sm 99.1 5E-10 1.7E-14 82.4 8.5 123 12-159 101-224 (226)
47 1r6b_X CLPA protein; AAA+, N-t 99.1 5.9E-10 2E-14 97.3 10.2 150 2-163 267-435 (758)
48 3bos_A Putative DNA replicatio 99.0 2.4E-10 8.2E-15 85.5 6.2 131 13-159 104-241 (242)
49 2r44_A Uncharacterized protein 99.0 2.8E-09 9.5E-14 84.2 10.4 134 15-164 111-300 (331)
50 2qby_A CDC6 homolog 1, cell di 99.0 2.5E-09 8.7E-14 85.2 10.1 145 3-162 117-273 (386)
51 1g8p_A Magnesium-chelatase 38 98.9 7E-09 2.4E-13 82.1 10.9 133 14-163 145-324 (350)
52 1fnn_A CDC6P, cell division co 98.9 5.3E-09 1.8E-13 83.7 10.3 136 12-164 124-277 (389)
53 2qby_B CDC6 homolog 3, cell di 98.9 4.7E-09 1.6E-13 84.0 8.8 137 4-162 125-271 (384)
54 2c9o_A RUVB-like 1; hexameric 98.8 1E-08 3.4E-13 84.8 8.6 129 14-162 296-438 (456)
55 3pvs_A Replication-associated 98.8 4.6E-09 1.6E-13 86.7 6.6 141 2-164 91-247 (447)
56 1g41_A Heat shock protein HSLU 98.8 2.5E-10 8.4E-15 94.0 -1.4 87 2-100 100-188 (444)
57 1jr3_A DNA polymerase III subu 98.8 5.4E-08 1.8E-12 77.5 11.1 134 2-159 104-242 (373)
58 1in4_A RUVB, holliday junction 98.8 1.3E-07 4.3E-12 75.1 13.0 101 59-162 150-251 (334)
59 3hws_A ATP-dependent CLP prote 98.8 1.6E-08 5.5E-13 81.0 7.8 153 3-157 102-345 (363)
60 1l8q_A Chromosomal replication 98.8 6.6E-09 2.2E-13 81.9 5.1 132 13-161 98-240 (324)
61 3f9v_A Minichromosome maintena 98.8 3.5E-08 1.2E-12 84.2 9.8 133 14-163 392-589 (595)
62 1sxj_D Activator 1 41 kDa subu 98.7 6.9E-08 2.4E-12 76.3 10.4 127 13-159 133-261 (353)
63 2chq_A Replication factor C sm 98.7 1.3E-07 4.5E-12 73.5 10.5 122 13-159 102-224 (319)
64 4fcw_A Chaperone protein CLPB; 98.7 2.6E-08 8.9E-13 77.6 6.1 119 10-144 116-281 (311)
65 3pxi_A Negative regulator of g 98.7 1.6E-07 5.3E-12 82.1 11.5 118 2-144 256-388 (758)
66 1sxj_B Activator 1 37 kDa subu 98.6 1.9E-07 6.3E-12 72.8 9.7 123 13-160 107-230 (323)
67 3pxg_A Negative regulator of g 98.6 8.3E-08 2.9E-12 79.6 7.8 134 2-160 256-405 (468)
68 1qvr_A CLPB protein; coiled co 98.6 9.7E-08 3.3E-12 84.5 8.3 130 2-144 251-395 (854)
69 1jbk_A CLPB protein; beta barr 98.6 3.3E-08 1.1E-12 70.8 3.9 86 2-100 103-194 (195)
70 3u61_B DNA polymerase accessor 98.5 1.1E-07 3.8E-12 74.7 6.0 122 13-159 105-235 (324)
71 3nbx_X ATPase RAVA; AAA+ ATPas 98.5 1.4E-07 4.7E-12 78.9 6.7 132 13-162 109-286 (500)
72 1iqp_A RFCS; clamp loader, ext 98.5 2.6E-07 8.8E-12 72.1 7.6 122 13-159 110-232 (327)
73 3pxi_A Negative regulator of g 98.4 3.7E-07 1.3E-11 79.7 7.7 122 6-143 572-726 (758)
74 1w5s_A Origin recognition comp 98.4 4.7E-07 1.6E-11 72.9 7.5 140 12-162 137-294 (412)
75 3te6_A Regulatory protein SIR3 98.4 9.7E-07 3.3E-11 69.7 7.5 89 2-107 119-214 (318)
76 1r6b_X CLPA protein; AAA+, N-t 98.4 6.7E-07 2.3E-11 78.0 7.1 121 6-142 550-716 (758)
77 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-06 3.6E-11 69.7 7.7 107 13-139 134-242 (354)
78 1sxj_A Activator 1 95 kDa subu 98.3 3.5E-06 1.2E-10 70.6 10.6 126 12-161 147-274 (516)
79 1um8_A ATP-dependent CLP prote 98.3 5.3E-07 1.8E-11 72.4 5.1 146 12-160 136-364 (376)
80 1a5t_A Delta prime, HOLB; zinc 98.2 4.7E-06 1.6E-10 66.0 8.1 109 2-134 93-205 (334)
81 2p65_A Hypothetical protein PF 98.2 1E-06 3.4E-11 62.9 3.3 79 2-92 103-187 (187)
82 1qvr_A CLPB protein; coiled co 98.1 4.9E-06 1.7E-10 73.7 6.5 122 7-144 654-822 (854)
83 1sxj_C Activator 1 40 kDa subu 98.0 4.9E-06 1.7E-10 65.8 4.5 126 14-159 111-237 (340)
84 3k1j_A LON protease, ATP-depen 98.0 1.5E-05 5.2E-10 67.9 7.5 100 59-160 252-374 (604)
85 1g41_A Heat shock protein HSLU 97.9 7.4E-05 2.5E-09 61.5 10.5 142 15-160 252-432 (444)
86 2gno_A DNA polymerase III, gam 97.7 6.1E-05 2.1E-09 59.0 6.5 82 2-104 67-152 (305)
87 1ojl_A Transcriptional regulat 97.5 0.00014 4.9E-09 56.8 6.2 125 14-157 97-248 (304)
88 4akg_A Glutathione S-transfera 97.4 0.0002 6.7E-09 69.9 6.1 84 14-106 1337-1433(2695)
89 3f8t_A Predicted ATPase involv 97.3 0.0034 1.2E-07 52.1 11.7 134 14-163 301-485 (506)
90 2bjv_A PSP operon transcriptio 97.2 0.00065 2.2E-08 51.5 6.3 123 13-154 100-250 (265)
91 3cmw_A Protein RECA, recombina 97.2 0.00022 7.5E-09 67.0 4.0 67 2-69 1149-1218(1706)
92 1jr3_D DNA polymerase III, del 97.1 0.0038 1.3E-07 49.1 10.3 137 2-161 61-209 (343)
93 2r2a_A Uncharacterized protein 96.9 0.00074 2.5E-08 49.6 4.0 73 12-96 86-158 (199)
94 2qen_A Walker-type ATPase; unk 96.8 0.011 3.9E-07 45.8 10.5 109 13-134 128-246 (350)
95 2fna_A Conserved hypothetical 96.6 0.0066 2.2E-07 47.2 7.5 116 3-135 125-251 (357)
96 3n70_A Transport activator; si 94.7 0.019 6.4E-07 39.4 2.7 47 4-69 70-116 (145)
97 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.013 4.6E-07 46.2 2.1 69 3-76 174-242 (331)
98 3co5_A Putative two-component 93.7 0.034 1.2E-06 38.0 2.3 49 3-69 68-116 (143)
99 1ny5_A Transcriptional regulat 93.2 0.13 4.4E-06 41.2 5.4 126 14-159 232-385 (387)
100 3cmu_A Protein RECA, recombina 93.1 0.088 3E-06 50.6 4.8 67 2-68 1494-1563(2050)
101 4ag6_A VIRB4 ATPase, type IV s 92.0 0.66 2.2E-05 36.9 8.1 82 4-99 251-342 (392)
102 3dzd_A Transcriptional regulat 92.0 0.12 4E-06 41.2 3.6 110 14-140 223-360 (368)
103 1svm_A Large T antigen; AAA+ f 91.9 0.052 1.8E-06 43.6 1.4 69 12-90 215-284 (377)
104 4akg_A Glutathione S-transfera 88.8 8.3 0.00029 38.6 13.6 126 3-140 688-839 (2695)
105 3vkg_A Dynein heavy chain, cyt 88.6 1.3 4.6E-05 44.6 8.2 85 14-106 1375-1471(3245)
106 1taf_B TFIID TBP associated fa 87.5 0.91 3.1E-05 27.3 4.1 32 128-159 38-69 (70)
107 2kjq_A DNAA-related protein; s 87.2 0.21 7.3E-06 34.3 1.4 58 13-86 83-143 (149)
108 2iut_A DNA translocase FTSK; n 85.7 0.71 2.4E-05 39.1 4.0 74 15-101 345-420 (574)
109 1b67_A Protein (histone HMFA); 85.3 1.5 5.3E-05 25.8 4.4 36 127-162 33-68 (68)
110 1id3_B Histone H4; nucleosome 84.2 1.6 5.6E-05 28.2 4.4 37 126-162 58-94 (102)
111 3b0c_W CENP-W, centromere prot 83.2 2.5 8.5E-05 25.6 4.8 34 129-162 38-71 (76)
112 2hue_C Histone H4; mini beta s 83.1 1.4 5E-05 27.3 3.7 37 125-161 39-75 (84)
113 3sfz_A APAF-1, apoptotic pepti 82.1 7.4 0.00025 35.0 9.4 86 13-127 236-322 (1249)
114 1tzy_D Histone H4-VI; histone- 81.3 2.4 8.3E-05 27.3 4.4 35 127-161 60-94 (103)
115 2yfw_B Histone H4, H4; cell cy 81.2 2.4 8.4E-05 27.3 4.4 35 128-162 61-95 (103)
116 1f1e_A Histone fold protein; a 79.5 2.4 8.4E-05 29.5 4.2 37 128-164 114-150 (154)
117 1z6t_A APAF-1, apoptotic prote 79.4 5.4 0.00019 33.1 7.1 85 13-126 236-321 (591)
118 1ye8_A Protein THEP1, hypothet 77.9 5.8 0.0002 27.8 6.0 67 10-93 96-165 (178)
119 2ius_A DNA translocase FTSK; n 76.9 1.8 6E-05 36.1 3.3 77 13-102 296-375 (512)
120 1n0w_A DNA repair protein RAD5 75.5 2.9 0.0001 30.2 3.9 67 5-72 111-177 (243)
121 3ec2_A DNA replication protein 75.4 0.62 2.1E-05 32.5 0.2 46 12-70 99-144 (180)
122 1ku5_A HPHA, archaeal histon; 74.9 3.9 0.00013 24.2 3.7 35 125-159 35-69 (70)
123 1n1j_A NF-YB; histone-like PAI 74.7 5.9 0.0002 24.8 4.7 34 128-161 42-75 (93)
124 2ly8_A Budding yeast chaperone 74.4 5.7 0.0002 26.4 4.7 37 126-162 77-113 (121)
125 1g6h_A High-affinity branched- 74.2 9.5 0.00032 28.4 6.6 54 6-73 164-217 (257)
126 2ixe_A Antigen peptide transpo 73.6 7.3 0.00025 29.3 5.8 54 6-72 167-220 (271)
127 2yz2_A Putative ABC transporte 72.9 9.7 0.00033 28.5 6.4 54 6-73 149-202 (266)
128 3cmu_A Protein RECA, recombina 71.2 5.4 0.00018 38.8 5.4 72 2-73 795-873 (2050)
129 2ehv_A Hypothetical protein PH 71.2 4.7 0.00016 29.1 4.2 74 5-89 127-206 (251)
130 1e9r_A Conjugal transfer prote 71.0 6.6 0.00023 31.4 5.3 74 13-106 279-362 (437)
131 2ghi_A Transport protein; mult 70.9 14 0.00047 27.6 6.8 52 6-72 166-217 (260)
132 2zu0_C Probable ATP-dependent 70.6 11 0.00036 28.3 6.1 53 6-72 175-227 (267)
133 2pjz_A Hypothetical protein ST 70.2 15 0.00052 27.5 6.9 51 5-72 138-188 (263)
134 2cbz_A Multidrug resistance-as 69.8 14 0.00049 27.0 6.6 55 6-72 138-192 (237)
135 3b0c_T CENP-T, centromere prot 69.0 7.8 0.00027 25.3 4.4 59 98-162 15-73 (111)
136 2d2e_A SUFC protein; ABC-ATPas 67.1 15 0.00051 27.1 6.2 53 6-72 154-206 (250)
137 2w0m_A SSO2452; RECA, SSPF, un 67.0 2.6 9E-05 30.1 2.0 54 5-69 113-168 (235)
138 3gfo_A Cobalt import ATP-bindi 67.0 11 0.00036 28.6 5.4 55 6-73 154-208 (275)
139 2z43_A DNA repair and recombin 66.0 2.7 9.2E-05 32.5 1.9 64 3-67 192-256 (324)
140 2nq2_C Hypothetical ABC transp 65.9 8.4 0.00029 28.7 4.6 55 5-72 138-192 (253)
141 3lda_A DNA repair protein RAD5 65.6 4.6 0.00016 32.4 3.3 64 5-69 265-328 (400)
142 2zr9_A Protein RECA, recombina 65.5 2.4 8.3E-05 33.3 1.6 19 9-27 135-153 (349)
143 1xp8_A RECA protein, recombina 65.2 6.8 0.00023 31.0 4.2 59 10-68 149-210 (366)
144 2ff7_A Alpha-hemolysin translo 64.7 20 0.00069 26.4 6.6 52 6-72 156-207 (247)
145 3tif_A Uncharacterized ABC tra 62.6 7.7 0.00026 28.5 3.8 52 6-70 156-207 (235)
146 2olj_A Amino acid ABC transpor 61.9 8.6 0.0003 28.9 4.0 53 6-72 170-222 (263)
147 1n1j_B NF-YC; histone-like PAI 61.6 11 0.00039 23.8 4.0 32 130-161 54-85 (97)
148 4g1u_C Hemin import ATP-bindin 61.4 21 0.00073 26.7 6.2 47 13-72 165-211 (266)
149 2cvh_A DNA repair and recombin 61.1 4.6 0.00016 28.6 2.3 15 13-27 105-119 (220)
150 4a74_A DNA repair and recombin 60.5 3.8 0.00013 29.2 1.8 60 11-71 123-182 (231)
151 1b0u_A Histidine permease; ABC 59.4 8.7 0.0003 28.7 3.7 54 5-72 163-216 (262)
152 4g92_C HAPE; transcription fac 59.3 12 0.00042 24.6 4.0 31 130-160 76-106 (119)
153 2byk_B Chrac-14; nucleosome sl 59.3 17 0.00057 24.3 4.7 34 129-162 44-77 (128)
154 2pcj_A ABC transporter, lipopr 58.4 21 0.00072 25.8 5.6 51 6-70 151-201 (224)
155 1taf_A TFIID TBP associated fa 57.8 17 0.00058 21.5 4.0 37 125-161 30-66 (68)
156 2i1q_A DNA repair and recombin 57.5 3.7 0.00013 31.5 1.3 61 5-66 195-256 (322)
157 1vpl_A ABC transporter, ATP-bi 57.3 13 0.00044 27.7 4.3 53 6-72 157-209 (256)
158 1sgw_A Putative ABC transporte 56.2 13 0.00043 27.0 4.0 54 6-73 144-197 (214)
159 1v5w_A DMC1, meiotic recombina 55.5 5.7 0.00019 31.0 2.1 66 4-70 208-275 (343)
160 2nqb_D Histone H2B; nucleosome 54.2 24 0.00083 23.4 4.7 42 123-164 61-102 (123)
161 3auy_A DNA double-strand break 53.9 37 0.0013 26.4 6.7 45 11-70 302-347 (371)
162 1cr0_A DNA primase/helicase; R 53.2 5.2 0.00018 30.1 1.5 20 7-26 141-160 (296)
163 1ji0_A ABC transporter; ATP bi 52.9 17 0.00059 26.6 4.3 52 6-71 150-201 (240)
164 1tzy_B Histone H2B; histone-fo 52.8 26 0.00091 23.3 4.7 42 123-164 64-105 (126)
165 2a5y_B CED-4; apoptosis; HET: 52.7 23 0.00079 29.3 5.5 85 13-125 243-329 (549)
166 3hr8_A Protein RECA; alpha and 51.9 19 0.00064 28.4 4.6 57 10-66 136-195 (356)
167 1f1e_A Histone fold protein; a 49.5 22 0.00074 24.6 4.1 33 129-161 38-70 (154)
168 2l5a_A Histone H3-like centrom 48.7 27 0.00093 25.9 4.7 37 125-161 190-226 (235)
169 1pzn_A RAD51, DNA repair and r 48.4 11 0.00039 29.4 2.8 60 12-72 230-289 (349)
170 2ihy_A ABC transporter, ATP-bi 48.0 18 0.0006 27.4 3.8 54 5-72 171-226 (279)
171 3qkt_A DNA double-strand break 47.7 44 0.0015 25.6 6.1 60 9-89 268-327 (339)
172 1jfi_B DR1 protein, transcript 47.0 32 0.0011 24.4 4.7 33 130-162 50-82 (179)
173 3cmw_A Protein RECA, recombina 46.9 14 0.00048 35.4 3.6 68 2-69 1498-1568(1706)
174 3tui_C Methionine import ATP-b 45.5 35 0.0012 27.0 5.2 54 6-72 174-227 (366)
175 1f2t_B RAD50 ABC-ATPase; DNA d 45.0 65 0.0022 21.6 6.0 59 9-88 77-135 (148)
176 3ado_A Lambda-crystallin; L-gu 43.9 70 0.0024 24.7 6.7 110 42-160 100-226 (319)
177 3vkg_A Dynein heavy chain, cyt 43.0 46 0.0016 34.1 6.5 42 58-102 706-751 (3245)
178 2onk_A Molybdate/tungstate ABC 42.8 19 0.00066 26.4 3.2 53 6-71 137-189 (240)
179 2zts_A Putative uncharacterize 42.6 54 0.0019 23.2 5.7 68 3-79 125-192 (251)
180 2jss_A Chimera of histone H2B. 42.1 39 0.0013 24.1 4.6 41 124-164 32-72 (192)
181 2dr3_A UPF0273 protein PH0284; 41.3 56 0.0019 23.1 5.5 54 5-69 120-173 (247)
182 1g29_1 MALK, maltose transport 40.9 46 0.0016 26.3 5.3 54 5-71 149-202 (372)
183 3b85_A Phosphate starvation-in 40.9 12 0.00041 26.9 1.7 43 11-73 120-162 (208)
184 4aby_A DNA repair protein RECN 40.8 43 0.0015 26.2 5.2 46 11-71 311-358 (415)
185 3d31_A Sulfate/molybdate ABC t 40.6 47 0.0016 26.0 5.3 53 6-71 138-190 (348)
186 1u94_A RECA protein, recombina 40.1 14 0.00049 29.0 2.2 59 10-68 138-199 (356)
187 3io5_A Recombination and repai 39.6 26 0.00088 27.5 3.5 57 10-66 108-169 (333)
188 1z47_A CYSA, putative ABC-tran 39.6 44 0.0015 26.2 5.0 54 6-72 156-209 (355)
189 2dod_A Transcription elongatio 38.8 47 0.0016 20.3 4.0 33 88-120 11-43 (82)
190 3b60_A Lipid A export ATP-bind 38.5 75 0.0026 26.4 6.5 52 6-72 491-542 (582)
191 2yyz_A Sugar ABC transporter, 38.5 49 0.0017 26.0 5.1 54 6-72 144-197 (359)
192 1v43_A Sugar-binding transport 37.7 51 0.0017 26.1 5.1 53 6-71 152-204 (372)
193 1e69_A Chromosome segregation 37.5 1E+02 0.0035 23.3 6.8 43 13-70 241-283 (322)
194 1uhe_A Aspartate 1-decarboxyla 37.4 24 0.00082 22.4 2.5 21 7-27 70-90 (97)
195 3v9r_A MHF1, uncharacterized p 37.2 32 0.0011 21.5 3.0 36 125-160 44-79 (90)
196 1oxx_K GLCV, glucose, ABC tran 36.6 44 0.0015 26.2 4.5 53 6-71 151-203 (353)
197 1jfi_A Transcription regulator 36.2 17 0.0006 22.9 1.8 30 131-160 47-76 (98)
198 2byk_A Chrac-16; nucleosome sl 36.1 32 0.0011 23.3 3.2 31 130-160 54-85 (140)
199 2qi9_C Vitamin B12 import ATP- 35.5 63 0.0021 23.8 5.0 51 8-72 139-196 (249)
200 2w58_A DNAI, primosome compone 34.9 18 0.0006 25.2 1.8 13 14-26 116-128 (202)
201 2r6a_A DNAB helicase, replicat 34.8 15 0.0005 29.8 1.5 17 11-27 311-327 (454)
202 3plx_B Aspartate 1-decarboxyla 34.7 28 0.00095 22.3 2.5 20 7-26 71-90 (102)
203 2it1_A 362AA long hypothetical 34.7 46 0.0016 26.2 4.3 54 5-71 143-196 (362)
204 3b0b_B CENP-S, centromere prot 34.5 36 0.0012 22.0 3.0 37 125-161 51-87 (107)
205 2xns_C RGS14, regulator of G-p 33.6 15 0.00051 18.9 0.9 33 130-162 5-37 (40)
206 3rlf_A Maltose/maltodextrin im 33.1 62 0.0021 25.7 4.9 53 6-71 144-196 (381)
207 3b5x_A Lipid A export ATP-bind 32.5 71 0.0024 26.6 5.4 52 6-72 491-542 (582)
208 3fvq_A Fe(3+) IONS import ATP- 32.4 80 0.0027 24.8 5.4 52 6-71 149-201 (359)
209 3ozx_A RNAse L inhibitor; ATP 31.8 83 0.0028 26.1 5.6 55 5-72 395-449 (538)
210 4gp7_A Metallophosphoesterase; 31.6 13 0.00045 25.4 0.7 65 7-73 93-163 (171)
211 1uzc_A Hypothetical protein FL 31.2 76 0.0026 18.7 3.9 32 89-120 10-41 (71)
212 1tue_A Replication protein E1; 30.8 24 0.00081 25.8 1.9 9 15-23 105-113 (212)
213 1o6d_A Hypothetical UPF0247 pr 30.5 99 0.0034 21.4 5.0 41 60-105 98-141 (163)
214 3eod_A Protein HNR; response r 30.1 37 0.0013 21.1 2.7 18 4-21 42-59 (130)
215 3n53_A Response regulator rece 30.1 1E+02 0.0035 19.2 8.0 85 3-106 36-122 (140)
216 4dra_A Centromere protein S; D 30.1 46 0.0016 21.7 3.0 36 125-160 59-94 (113)
217 1tf7_A KAIC; homohexamer, hexa 30.0 1E+02 0.0036 25.2 6.0 61 4-73 129-189 (525)
218 3hfh_A Transcription elongatio 30.0 33 0.0011 24.2 2.6 47 91-137 2-54 (190)
219 1t6n_A Probable ATP-dependent 30.0 37 0.0013 23.8 2.9 14 14-27 159-172 (220)
220 3qf4_A ABC transporter, ATP-bi 29.6 1E+02 0.0035 25.7 6.0 52 6-72 490-541 (587)
221 1w1w_A Structural maintenance 29.5 97 0.0033 24.5 5.6 44 12-69 354-397 (430)
222 1h3o_B Transcription initiatio 29.4 95 0.0033 18.6 4.4 63 92-161 7-71 (76)
223 1nlf_A Regulatory protein REPA 28.9 40 0.0014 24.9 3.0 15 13-27 133-147 (279)
224 4a82_A Cystic fibrosis transme 28.7 1.4E+02 0.0048 24.7 6.6 52 6-72 488-539 (578)
225 4eef_G F-HB80.4, designed hema 28.2 44 0.0015 20.0 2.5 36 97-132 28-63 (74)
226 3vh5_A CENP-S; histone fold, c 26.8 64 0.0022 21.9 3.4 36 125-160 51-86 (140)
227 3bh0_A DNAB-like replicative h 26.8 36 0.0012 25.9 2.5 51 11-67 177-229 (315)
228 1g6u_A Domain swapped dimer; d 26.4 38 0.0013 17.6 1.7 16 121-136 13-28 (48)
229 3qf7_A RAD50; ABC-ATPase, ATPa 26.1 2.2E+02 0.0076 22.0 7.0 45 12-70 302-346 (365)
230 1q57_A DNA primase/helicase; d 25.9 29 0.001 28.3 1.9 19 9-27 350-368 (503)
231 1g5t_A COB(I)alamin adenosyltr 25.5 87 0.003 22.4 4.1 68 4-89 107-178 (196)
232 3nh6_A ATP-binding cassette SU 25.2 1.9E+02 0.0065 21.9 6.3 52 6-72 201-252 (306)
233 4a8j_B Elongator complex prote 24.8 90 0.0031 23.6 4.2 61 2-77 12-74 (270)
234 3thx_B DNA mismatch repair pro 24.1 1E+02 0.0036 27.5 5.1 50 11-73 750-800 (918)
235 3fes_A ATP-dependent CLP endop 23.8 1.4E+02 0.0046 19.6 4.7 37 125-162 82-118 (145)
236 3bk7_A ABC transporter ATP-bin 23.8 1.2E+02 0.0043 25.5 5.4 55 5-72 481-535 (607)
237 2q6t_A DNAB replication FORK h 23.6 36 0.0012 27.3 2.0 18 10-27 307-324 (444)
238 2hg7_A Phage-like element PBSX 23.3 92 0.0032 19.6 3.4 52 84-135 34-87 (110)
239 1fc3_A SPO0A; response regulat 23.2 77 0.0026 20.8 3.2 41 116-157 52-92 (120)
240 1rfy_A TRAM protein;, transcri 23.0 64 0.0022 20.5 2.6 31 109-139 8-38 (102)
241 3qf4_B Uncharacterized ABC tra 22.9 2.4E+02 0.0081 23.5 6.9 52 6-72 502-553 (598)
242 1mv5_A LMRA, multidrug resista 22.6 64 0.0022 23.4 3.1 19 6-24 150-168 (243)
243 3gd7_A Fusion complex of cysti 22.6 96 0.0033 24.6 4.2 53 5-72 165-217 (390)
244 3j16_B RLI1P; ribosome recycli 22.4 1.3E+02 0.0045 25.4 5.3 54 6-73 232-285 (608)
245 1yqt_A RNAse L inhibitor; ATP- 22.3 1.9E+02 0.0064 23.9 6.1 54 5-72 168-221 (538)
246 2qr3_A Two-component system re 22.3 77 0.0026 19.8 3.2 18 4-21 38-55 (140)
247 3j16_B RLI1P; ribosome recycli 22.3 1.1E+02 0.0037 25.9 4.7 54 6-72 478-531 (608)
248 2pze_A Cystic fibrosis transme 22.2 2.2E+02 0.0074 20.3 7.0 53 5-72 140-193 (229)
249 2hjd_A Quorum-sensing antiacti 22.2 63 0.0021 20.6 2.4 31 109-139 8-38 (102)
250 2f8n_G Core histone macro-H2A. 22.1 1.4E+02 0.0046 19.6 4.3 23 137-159 64-86 (120)
251 1khy_A CLPB protein; alpha hel 22.1 1.4E+02 0.0049 19.3 4.6 38 123-161 4-41 (148)
252 3bk7_A ABC transporter ATP-bin 21.9 1.9E+02 0.0064 24.4 6.1 54 5-72 238-291 (607)
253 3fh2_A Probable ATP-dependent 21.8 1.6E+02 0.0054 19.3 4.7 37 125-162 82-118 (146)
254 1yqt_A RNAse L inhibitor; ATP- 21.7 1.3E+02 0.0043 24.9 5.0 55 5-72 411-465 (538)
255 3fmo_B ATP-dependent RNA helic 21.4 61 0.0021 24.3 2.8 14 14-27 236-249 (300)
256 2nqb_C Histone H2A; nucleosome 21.3 1.4E+02 0.0049 19.5 4.3 23 137-159 65-87 (123)
257 2ys9_A Homeobox and leucine zi 21.3 83 0.0028 18.6 2.7 35 98-133 19-53 (70)
258 2y1q_A CLPC N-domain, negative 20.8 1.4E+02 0.0047 19.5 4.3 38 123-161 4-41 (150)
259 2qgz_A Helicase loader, putati 20.6 54 0.0018 24.9 2.3 13 13-25 214-226 (308)
260 1k6k_A ATP-dependent CLP prote 20.5 1.3E+02 0.0045 19.4 4.1 30 129-158 5-34 (143)
261 4a1f_A DNAB helicase, replicat 20.2 79 0.0027 24.6 3.3 18 11-28 153-171 (338)
262 2c45_A Aspartate 1-decarboxyla 20.1 50 0.0017 22.3 1.8 20 7-26 96-115 (139)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=270.75 Aligned_cols=164 Identities=46% Similarity=0.802 Sum_probs=156.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
|+.+|..|+.++||||||||+|+++++|.....+.+....++++.||++||++....+|+||+|||+|+.||+|++||||
T Consensus 230 vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGR 309 (405)
T 4b4t_J 230 VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR 309 (405)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTS
T ss_pred HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCc
Confidence 78999999999999999999999999997777777777889999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+||.|+.++|.+||+.++++..+..++++..+|..|+||||+||+++|++|+..|+++++..|+.+||..|++++
T Consensus 310 fD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 310 IDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 030674 162 VKKP 165 (173)
Q Consensus 162 ~p~~ 165 (173)
.++.
T Consensus 390 ~~~~ 393 (405)
T 4b4t_J 390 MNKN 393 (405)
T ss_dssp HHHH
T ss_pred hCcc
Confidence 7653
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=272.06 Aligned_cols=172 Identities=48% Similarity=0.785 Sum_probs=164.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+.++||||||||+|+++++|.....+.+....+.++.||+.||++...++|+||+|||+|+.||+|++||||
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGR 342 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 342 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTS
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCc
Confidence 78999999999999999999999999997776666777789999999999999998999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+||.|+.++|.+||+.++++..+.+++++..+|..|+||||+||.++|++|+..|+++++..|+.+||..|++++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 343 LDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred eeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCC
Q 030674 162 VKKPDTDFEFYK 173 (173)
Q Consensus 162 ~p~~~~~~~~~~ 173 (173)
+|+..+.+++|-
T Consensus 423 ~~~~~~~i~~Ya 434 (434)
T 4b4t_M 423 QARKSKSVSFYA 434 (434)
T ss_dssp SSSCCCCCCCCC
T ss_pred hCCCCcCccccC
Confidence 999999999983
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=265.91 Aligned_cols=169 Identities=50% Similarity=0.862 Sum_probs=158.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+||||||||+|++++.|.....+.+.+..+.++.||+.+|++....+|+||+|||+|+.||+|++||||
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 343 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGR 343 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTT
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCc
Confidence 78999999999999999999999999997777777777889999999999999888999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+|+.|+.++|.+||+.++++..+..++++..+|..|+||||+||+++|++|+..|+++++..|+.+||..|++++
T Consensus 344 fD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 344 IDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999998
Q ss_pred CCCC-Ccccc
Q 030674 162 VKKP-DTDFE 170 (173)
Q Consensus 162 ~p~~-~~~~~ 170 (173)
.|+. .+.+|
T Consensus 424 ~~~~~~e~le 433 (437)
T 4b4t_I 424 MKNKVEENLE 433 (437)
T ss_dssp HHHHCCCSSS
T ss_pred hCCCChhhHH
Confidence 8763 44454
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-39 Score=263.90 Aligned_cols=164 Identities=51% Similarity=0.785 Sum_probs=156.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+.++||||||||+|+++++|.+...+.+....+.++.||++||++....+|+||+|||+|+.||+|++||||
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGR 342 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGR 342 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTS
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCc
Confidence 78999999999999999999999999997777777777889999999999999988899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+||.|+.++|.+||+.++++.....++|+..+|..|+||||+||.++|.+|+..|+++++..|+.+||..|++++
T Consensus 343 fD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 343 LDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp EEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred cceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 030674 162 VKKP 165 (173)
Q Consensus 162 ~p~~ 165 (173)
.|+.
T Consensus 423 ~~~~ 426 (437)
T 4b4t_L 423 AEVK 426 (437)
T ss_dssp HHTC
T ss_pred Hhcc
Confidence 8764
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-39 Score=264.78 Aligned_cols=172 Identities=72% Similarity=1.080 Sum_probs=161.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
|+.+|..|+.++||||||||+|++++.|.....+.+....+++++||++||++....+|+||+|||+|+.||+|++||||
T Consensus 254 ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGR 333 (428)
T 4b4t_K 254 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGR 333 (428)
T ss_dssp HHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSS
T ss_pred HHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCc
Confidence 78999999999999999999999999997777777777889999999999999988999999999999999999999999
Q ss_pred ccceecCC-CCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 82 LDRKIEFP-LPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 82 f~~~i~~~-~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
||+.|+|| +|+.++|..||+.++++..+.+++++..+|..|+||||+||.++|++|+..|+++++..|+++||..|+..
T Consensus 334 fd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 334 LDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 99999997 89999999999999999988888999999999999999999999999999999999999999999999987
Q ss_pred hCCC--CCcccccCC
Q 030674 161 NVKK--PDTDFEFYK 173 (173)
Q Consensus 161 ~~p~--~~~~~~~~~ 173 (173)
..+. ..+++++||
T Consensus 414 ~~~~~~~~~~~d~yk 428 (428)
T 4b4t_K 414 QVKTDNTVDKFDFYK 428 (428)
T ss_dssp HSCSCCCSSCCCSCC
T ss_pred hhCccCCccHhhhhC
Confidence 6543 467889987
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=259.65 Aligned_cols=162 Identities=44% Similarity=0.751 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+.++||||||||+|+++..|.+...+......+.++.+|++|++.....+|+||+|||+|+.||+|++||||
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGR 370 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGR 370 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTT
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcccc
Confidence 78999999999999999999999999997777777777889999999999999988999999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
||++|+|+.|+.++|.+||+.++++..+..++++..+|..|+||||+||+++|++|+..|+++++..++.+||..|++++
T Consensus 371 FD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 371 IDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp CCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 030674 162 VK 163 (173)
Q Consensus 162 ~p 163 (173)
.+
T Consensus 451 ~~ 452 (467)
T 4b4t_H 451 IS 452 (467)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-37 Score=269.44 Aligned_cols=172 Identities=36% Similarity=0.592 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+||||||||+|++++.|+......+....+++++||++||++....+|+||+|||+|+.||+|++||||
T Consensus 559 vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgR 638 (806)
T 3cf2_A 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 638 (806)
T ss_dssp HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTT
T ss_pred HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCc
Confidence 78999999999999999999999999986554445555679999999999999988899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
||+.|+++.|+.++|.+||+.++++..+..++++..+|+.|+||||+||+++|++|+..|+++.
T Consensus 639 fd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~ 718 (806)
T 3cf2_A 639 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 718 (806)
T ss_dssp SCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC--------------
T ss_pred ceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcc
Confidence 9999999999999999999999999888888999999999999999999999999999998763
Q ss_pred ---------CCccCHHHHHHHHHhhCCC-CCcccccCC
Q 030674 146 ---------RYVILPKDFEKGYRTNVKK-PDTDFEFYK 173 (173)
Q Consensus 146 ---------~~~i~~~d~~~al~~~~p~-~~~~~~~~~ 173 (173)
..+|+.+||..|++.++|| +.+++++|+
T Consensus 719 ~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~ 756 (806)
T 3cf2_A 719 AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYE 756 (806)
T ss_dssp ---------CCC----CCTTTC---------------C
T ss_pred ccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 1259999999999999999 466666663
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=2.3e-32 Score=238.17 Aligned_cols=164 Identities=38% Similarity=0.611 Sum_probs=149.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|++++||||||||+|+++++|++... ....+++++|+..|+++...++|+||++||+++.||++++||||
T Consensus 286 lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~---~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GR 362 (806)
T 3cf2_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG---EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC---TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHcCCeEEEEehhcccccccCCCCC---hHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcc
Confidence 689999999999999999999999998854433 23458999999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
||++|+++.|+.++|.+||+.++++..+..++++..+|..|+||+++||..+|++|+..|+++.
T Consensus 363 Fd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~ 442 (806)
T 3cf2_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (806)
T ss_dssp SCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHH
T ss_pred cceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhh
Confidence 9999999999999999999999999888889999999999999999999999999999988763
Q ss_pred -CCccCHHHHHHHHHhhCCCCCcc
Q 030674 146 -RYVILPKDFEKGYRTNVKKPDTD 168 (173)
Q Consensus 146 -~~~i~~~d~~~al~~~~p~~~~~ 168 (173)
...++.+||..|++.++|+....
T Consensus 443 ~~~~v~~~Df~~Al~~~~ps~~r~ 466 (806)
T 3cf2_A 443 NSLAVTMDDFRWALSQSNPSALRE 466 (806)
T ss_dssp HHCEECTTHHHHHHSSSSCCCCCC
T ss_pred ccceeeHHHHHHHHHhCCCccccc
Confidence 13588999999999999987543
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=2.6e-29 Score=196.04 Aligned_cols=163 Identities=34% Similarity=0.571 Sum_probs=136.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+...|+++++||+|.++..++.... ....+..+.++..|++...+..++++++||+|+.||++++||||
T Consensus 92 i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gR 168 (274)
T 2x8a_A 92 VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGR 168 (274)
T ss_dssp HHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTS
T ss_pred HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCccc
Confidence 578999999999999999999999876533211 12236778899999998888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHcc---CCCCCcCCHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHhc-----------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAK---MNLSDEVDLEDYVSRPD--KISAAEIAAICQEAGMHAVRKN----------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~---~~~~~~~~~~~la~~t~--g~s~~di~~l~~~a~~~a~~~~----------- 145 (173)
||+.|+++.|+.++|.+||+.+++. .....++++..+|..|. ||||+||.++|++|+..|+++.
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~ 248 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKG 248 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999864 23456789999999854 9999999999999999998752
Q ss_pred CCccCHHHHHHHHHhhCCCCCc
Q 030674 146 RYVILPKDFEKGYRTNVKKPDT 167 (173)
Q Consensus 146 ~~~i~~~d~~~al~~~~p~~~~ 167 (173)
...|+.+||+.|+++++|+...
T Consensus 249 ~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 249 ELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp -CCBCHHHHHHHHTTCCCCC--
T ss_pred CCeecHHHHHHHHHHhcCCCCh
Confidence 2469999999999999998654
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=2.1e-28 Score=203.41 Aligned_cols=163 Identities=39% Similarity=0.606 Sum_probs=142.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|+..+||||||||+|.+...++....+.+....+.++.++..++++....+++||++||.++.+|++++||||
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gR 176 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGR 176 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCc
Confidence 57899999999999999999999998875444444555568889999999988777899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|++.++++.|+.++|.+|++.+++...+.+++++..+|..|+||+++||.++|++|+..+.+++...|+.+||..|+.++
T Consensus 177 Fd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 177 FDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 99999999999999999999999988888888999999999999999999999999999998888899999999999998
Q ss_pred CCC
Q 030674 162 VKK 164 (173)
Q Consensus 162 ~p~ 164 (173)
.+.
T Consensus 257 ~~~ 259 (476)
T 2ce7_A 257 IAG 259 (476)
T ss_dssp C--
T ss_pred hcC
Confidence 764
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=2.3e-28 Score=192.78 Aligned_cols=165 Identities=36% Similarity=0.579 Sum_probs=143.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+..+|+||||||+|.+...++...........++++.++..++++....+++||+|||.++.+|++++||||
T Consensus 97 ~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gR 176 (301)
T 3cf0_A 97 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 176 (301)
T ss_dssp HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCc
Confidence 57899999999999999999999997764332222222346788899999988777889999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
|+..++++.|+.++|.+|++.+++......++++..++..|.||+++||.++|++|+..|.++.
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 256 (301)
T 3cf0_A 177 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 256 (301)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 9999999999999999999999998877778899999999999999999999999988877542
Q ss_pred ---------CCccCHHHHHHHHHhhCCCCC
Q 030674 146 ---------RYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 146 ---------~~~i~~~d~~~al~~~~p~~~ 166 (173)
...++.+||..|++..+|+..
T Consensus 257 ~~~~~~~~~~~~v~~~~~~~al~~~~~s~~ 286 (301)
T 3cf0_A 257 AMEVEEDDPVPEIRRDHFEEAMRFARRSVS 286 (301)
T ss_dssp ---------CCCBCHHHHHHHHTTCCCSSC
T ss_pred cccccccccCCccCHHHHHHHHHHcCCCCC
Confidence 136899999999999999854
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=4.9e-27 Score=180.80 Aligned_cols=163 Identities=39% Similarity=0.601 Sum_probs=146.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+...|++++|||+|.+...+.....+......+.++.++..++++....+++||++||.++.+|+++.||||
T Consensus 93 ~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~r 172 (257)
T 1lv7_A 93 VRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGR 172 (257)
T ss_dssp HHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTS
T ss_pred HHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCc
Confidence 57889999998999999999999998765433333444557888999999998888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|+..++++.|+.++|.+|++.++++..+.++.++..++..++||+++||.+++++|...|..++...|+.+||..|++.+
T Consensus 173 f~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 173 FDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 99999999999999999999999988887888899999999999999999999999999999988899999999999988
Q ss_pred CCC
Q 030674 162 VKK 164 (173)
Q Consensus 162 ~p~ 164 (173)
...
T Consensus 253 ~~~ 255 (257)
T 1lv7_A 253 MMG 255 (257)
T ss_dssp TTC
T ss_pred hcC
Confidence 644
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.6e-26 Score=180.00 Aligned_cols=171 Identities=52% Similarity=0.810 Sum_probs=148.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..++...|+||+|||+|.+++++.+...+......+.+..+++.++++....++++|+|||.++.+|++++++||
T Consensus 99 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~R 178 (285)
T 3h4m_A 99 VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 178 (285)
T ss_dssp HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTS
T ss_pred HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCc
Confidence 56889999999999999999999998876665556666778888999999988788899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..+++.|...|..++...|+.+||..|++++
T Consensus 179 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 179 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp EEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 99999999999999999999999988877788999999999999999999999999999999998899999999999877
Q ss_pred CCC-------CCcccccC
Q 030674 162 VKK-------PDTDFEFY 172 (173)
Q Consensus 162 ~p~-------~~~~~~~~ 172 (173)
.+. ..+...||
T Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (285)
T 3h4m_A 259 MEKKKVKVKEPAHLDVLY 276 (285)
T ss_dssp HHHHCCC-----------
T ss_pred HhccccccCCchHHHHHH
Confidence 532 35556665
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=184.39 Aligned_cols=160 Identities=32% Similarity=0.503 Sum_probs=140.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++.+|..|+..+|+||||||+|.+++.+... ......++++.++..++++. ...+++||++||.|+.+|++++|
T Consensus 94 ~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-- 168 (322)
T 1xwi_A 94 VKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-- 168 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--
T ss_pred HHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--
Confidence 6789999999999999999999999877443 23345688899999999885 45789999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--------------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 145 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 145 (173)
||+..++++.|+.++|.+||+.++...... .+.++..+|..|.|||++||..+|++|...++++.
T Consensus 169 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~ 248 (322)
T 1xwi_A 169 RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSR 248 (322)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECS
T ss_pred hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 999999999999999999999999877654 55789999999999999999999999998888652
Q ss_pred -----------------------------------CCccCHHHHHHHHHhhCCCCC
Q 030674 146 -----------------------------------RYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 146 -----------------------------------~~~i~~~d~~~al~~~~p~~~ 166 (173)
..+|+.+||..|++.++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~ 304 (322)
T 1xwi_A 249 ADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVN 304 (322)
T ss_dssp SCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCC
T ss_pred cccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCC
Confidence 136999999999999999964
No 15
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1.8e-26 Score=192.82 Aligned_cols=164 Identities=38% Similarity=0.613 Sum_probs=146.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+...|++++|||+|.+...+.....+...+..+.++.++..+++...+..++++++||.|+.||++++||||
T Consensus 112 v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gR 191 (499)
T 2dhr_A 112 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 191 (499)
T ss_dssp HHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTS
T ss_pred HHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccc
Confidence 46788888888899999999999987764332333445568889999999988877889999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|++.|+++.|+.++|.+||+.+++...+.+++++..+|..|+||+++||+++|++|+..|.+++...|+.+||..|++++
T Consensus 192 fdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 192 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp SCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred cceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 99999999999999999999999888888888999999999999999999999999999988887889999999999998
Q ss_pred CCCC
Q 030674 162 VKKP 165 (173)
Q Consensus 162 ~p~~ 165 (173)
.+..
T Consensus 272 ~~~~ 275 (499)
T 2dhr_A 272 MMLP 275 (499)
T ss_dssp TTCS
T ss_pred hccc
Confidence 8754
No 16
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=7.8e-26 Score=173.78 Aligned_cols=157 Identities=39% Similarity=0.634 Sum_probs=135.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.+....|+++++||+|.+...+............+.++.++..+++...+..++++++||.|+.+|++++|+||
T Consensus 97 i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~r 176 (254)
T 1ixz_A 97 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 176 (254)
T ss_dssp HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCc
Confidence 46789999878899999999999987664322223445567888999999988777789999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
|+..++++.|+.++|.+||+.+++...+.++.++..+|..|+||+++||.+++++|...|.+++...|+.+||.+|+
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 99999999999999999999999887777888999999999999999999999999999998887889999999886
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=1.4e-26 Score=184.14 Aligned_cols=166 Identities=32% Similarity=0.469 Sum_probs=139.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++.+|..|+..+|+||||||+|.+.+.+...... ...++.+.++..++++. ...+++||+|||.++.||+++++
T Consensus 99 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~-- 173 (322)
T 3eie_A 99 VKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 173 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGSCC------C---CTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHhcCCeEEEechhhhhhccCCCCcch---HHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--
Confidence 6789999999999999999999999877443322 23477888999998873 56689999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC-------------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR------------- 146 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~------------- 146 (173)
||+..++++.|+.++|.+||+.++...... ++.++..++..|.||+++||..+|++|...++++..
T Consensus 174 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~ 253 (322)
T 3eie_A 174 RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 253 (322)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----
T ss_pred ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccc
Confidence 999999999999999999999999887654 556899999999999999999999999888887631
Q ss_pred ------------------------------CccCHHHHHHHHHhhCCCC-CcccccC
Q 030674 147 ------------------------------YVILPKDFEKGYRTNVKKP-DTDFEFY 172 (173)
Q Consensus 147 ------------------------------~~i~~~d~~~al~~~~p~~-~~~~~~~ 172 (173)
.+|+.+||..|++.++|+. .++++.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~ 310 (322)
T 3eie_A 254 ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQ 310 (322)
T ss_dssp CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHH
T ss_pred cccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3599999999999999995 4454443
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.93 E-value=8.1e-26 Score=182.04 Aligned_cols=160 Identities=33% Similarity=0.481 Sum_probs=135.6
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC-CCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++.+|..|+..+|+||||||+|.+.+.+... ......++.+.|+..++++.. ..+++||++||.++.||++++|
T Consensus 132 ~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 206 (355)
T 2qp9_X 132 VKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-- 206 (355)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--
T ss_pred HHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--
Confidence 5789999999999999999999999876433 233456788899999988743 5689999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--------------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 145 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 145 (173)
||+..++++.|+.++|.+||+.++...... ++.++..+|..|.||+++||..+|++|...|+++.
T Consensus 207 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 286 (355)
T 2qp9_X 207 RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 286 (355)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC---
T ss_pred ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 999999999999999999999999877643 55689999999999999999999999999988762
Q ss_pred -----------------------------CCccCHHHHHHHHHhhCCCCC
Q 030674 146 -----------------------------RYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 146 -----------------------------~~~i~~~d~~~al~~~~p~~~ 166 (173)
..+|+.+||..|++.++|+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 287 ETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp --CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred cccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 135999999999999999964
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.3e-25 Score=187.57 Aligned_cols=163 Identities=39% Similarity=0.598 Sum_probs=145.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|..|...+|++|||||+|.+.+++... ......++.+.|+..++++....+++||+|||.++.||++++++||
T Consensus 286 ~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gR 362 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTS
T ss_pred HHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCc
Confidence 5789999999999999999999999876332 2334468888999999988888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC--------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY-------------- 147 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~-------------- 147 (173)
|+..++++.|+.++|.+||+.+++...+..+.++..++..|.||+++||..+|++|...+.++...
T Consensus 363 f~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~ 442 (489)
T 3hu3_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (489)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHH
T ss_pred CceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhc
Confidence 999999999999999999999999888888889999999999999999999999999999887532
Q ss_pred ---ccCHHHHHHHHHhhCCCCCc
Q 030674 148 ---VILPKDFEKGYRTNVKKPDT 167 (173)
Q Consensus 148 ---~i~~~d~~~al~~~~p~~~~ 167 (173)
.++.+||..|++.++|+...
T Consensus 443 ~~~~vt~edf~~Al~~~~ps~~r 465 (489)
T 3hu3_A 443 NSLAVTMDDFRWALSQSNPSALR 465 (489)
T ss_dssp HHCCBCHHHHHHHHTSHHHHHHH
T ss_pred ccCcCCHHHHHHHHHhCCchhhh
Confidence 58999999999999988643
No 20
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1e-24 Score=169.79 Aligned_cols=157 Identities=39% Similarity=0.634 Sum_probs=135.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.+....|+++++||+|.+...+............+.+..++..+++...+..++++++||.|+.||++++|+||
T Consensus 121 i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~r 200 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGR 200 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTS
T ss_pred HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCc
Confidence 46789999888899999999999986653322223344567788899999988777789999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
|+..++++.|+.++|.+||+.+++...+.++.++..+|..++||+++||++++++|...+..++...|+.+||.+|+
T Consensus 201 f~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 201 FDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp SCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 99999999999999999999999887777788999999999999999999999999999988887889999999886
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=3.9e-25 Score=182.83 Aligned_cols=160 Identities=32% Similarity=0.505 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++.+|..|+..+|+||||||+|.+++.+.... .....++.+.|+..++++. ...+++||+|||.|+.+|++++|
T Consensus 216 ~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-- 290 (444)
T 2zan_A 216 VKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-- 290 (444)
T ss_dssp HHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC---CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--
T ss_pred HHHHHHHHHHcCCeEEEEechHhhccCCCCcc---ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--
Confidence 68899999999999999999999998774432 2334588899999999875 35689999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc--------------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN-------------- 145 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~-------------- 145 (173)
||+..++++.|+.++|..||+.++...... ++.++..+|..|+|||++||..+|++|...++++.
T Consensus 291 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~ 370 (444)
T 2zan_A 291 RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSR 370 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCS
T ss_pred hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 999999999999999999999999876543 55789999999999999999999999998888652
Q ss_pred -----------------------------------CCccCHHHHHHHHHhhCCCCC
Q 030674 146 -----------------------------------RYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 146 -----------------------------------~~~i~~~d~~~al~~~~p~~~ 166 (173)
..+|+.+||..|++.++||..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~ 426 (444)
T 2zan_A 371 ADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVN 426 (444)
T ss_dssp SCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCC
T ss_pred cccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCC
Confidence 126899999999999999963
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=170.43 Aligned_cols=164 Identities=35% Similarity=0.577 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCC-CchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
++.+|..|+...|+||+|||+|.+...+.....+ ........+..+++.+++.....++++|+|||.++.+|+++++||
T Consensus 87 ~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~ 166 (262)
T 2qz4_A 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPG 166 (262)
T ss_dssp HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTT
T ss_pred HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCC
Confidence 5688999999999999999999998776432211 122334677889999988877779999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcC--CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEV--DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
||+..++++.|+.++|.++++.++......... .+..++..+.||+++||..++++|...|.+++...|+.+||..|+
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999999999999999999999887665432 347899999999999999999999999998888899999999999
Q ss_pred HhhCCCC
Q 030674 159 RTNVKKP 165 (173)
Q Consensus 159 ~~~~p~~ 165 (173)
+++.++.
T Consensus 247 ~~~~~~~ 253 (262)
T 2qz4_A 247 ERVLAGT 253 (262)
T ss_dssp HHHHHHH
T ss_pred HHhccCh
Confidence 9887653
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=1.3e-27 Score=209.79 Aligned_cols=171 Identities=36% Similarity=0.589 Sum_probs=135.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.|+...||||||||+|.++..++...........++++.|++.|+++....+++||+|||.++.||++++||||
T Consensus 559 i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgR 638 (806)
T 1ypw_A 559 VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGR 638 (806)
T ss_dssp HHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGG
T ss_pred HHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccc
Confidence 57899999999999999999999998885544444456679999999999999888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc----------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN---------------- 145 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~---------------- 145 (173)
|+..|+++.|+.++|.+||+.++++..+..++++..++..|.|||++||.++|+.|...|.++.
T Consensus 639 f~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 718 (806)
T 1ypw_A 639 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPS 718 (806)
T ss_dssp TTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----------------
T ss_pred cCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 9999999999999999999999998888788899999999999999999999999999998774
Q ss_pred ---------CCccCHHHHHHHHHhhCCCC-CcccccC
Q 030674 146 ---------RYVILPKDFEKGYRTNVKKP-DTDFEFY 172 (173)
Q Consensus 146 ---------~~~i~~~d~~~al~~~~p~~-~~~~~~~ 172 (173)
...|+.+||..|++..+|+. .++++.|
T Consensus 719 ~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~y 755 (806)
T 1ypw_A 719 AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 755 (806)
T ss_dssp --------CCTTTTTTSSCCCCCC-------------
T ss_pred ccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 12589999999999888874 3344444
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=3.3e-26 Score=176.93 Aligned_cols=168 Identities=34% Similarity=0.570 Sum_probs=136.2
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCC-CCCchHHHHHHHHHHHhccCCCC-CCCeEEEEEeCCCCCCCccccCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQ-TGADREVQRILMELLNQMDGFDQ-TVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~-~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
+.+|+.|+..+|+||+|||+|.+...+.... .+.+....+.++.++..+++... ..++++|+|||.++.+|+++.++|
T Consensus 93 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~ 172 (268)
T 2r62_A 93 RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPG 172 (268)
T ss_dssp STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSS
T ss_pred HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCC
Confidence 4678999999999999999999987652211 01111112345667778877643 345999999999999999999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
||+..++++.|+.++|.++|+.++....+..+.++..++..+.||+++||.+++++|...|..++...|+.++|..++++
T Consensus 173 Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 173 RFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp SSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred CCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 99999999999999999999999988877777889999999999999999999999999998877788999999999999
Q ss_pred hCCCCCcccc
Q 030674 161 NVKKPDTDFE 170 (173)
Q Consensus 161 ~~p~~~~~~~ 170 (173)
..|+.....+
T Consensus 253 ~~~~~~~~~~ 262 (268)
T 2r62_A 253 GIAGLEKKLE 262 (268)
T ss_dssp CCCCCC----
T ss_pred Hhhcchhhhh
Confidence 9999876654
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.89 E-value=9.7e-23 Score=164.12 Aligned_cols=165 Identities=32% Similarity=0.512 Sum_probs=135.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--CCCCeEEEEEeCCCCCCCccccCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
++.+|..|+...|+||||||+|.+...+... ......++.+.++..++++. ...+++||+|||.++.+|+++++
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~- 240 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR- 240 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT-
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh-
Confidence 5788999999999999999999999776332 23344578888999998764 34589999999999999999999
Q ss_pred CCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc------------C
Q 030674 80 GRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------R 146 (173)
Q Consensus 80 grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------~ 146 (173)
||+..++++.|+.++|.++++.++...... .+.++..++..|.||+++||..+|+.|...++++. .
T Consensus 241 -Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~ 319 (357)
T 3d8b_A 241 -RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQV 319 (357)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------C
T ss_pred -hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 999999999999999999999998775443 34568899999999999999999999988888753 2
Q ss_pred CccCHHHHHHHHHhhCCCC-Cccccc
Q 030674 147 YVILPKDFEKGYRTNVKKP-DTDFEF 171 (173)
Q Consensus 147 ~~i~~~d~~~al~~~~p~~-~~~~~~ 171 (173)
..|+.+||..|+..++|+. .++++.
T Consensus 320 ~~i~~~d~~~al~~~~ps~~~~~~~~ 345 (357)
T 3d8b_A 320 RPIAYIDFENAFRTVRPSVSPKDLEL 345 (357)
T ss_dssp CCBCHHHHHHHHHHHGGGCCCCCHHH
T ss_pred CCcCHHHHHHHHHhcCCCCCHHHHHH
Confidence 5799999999999999975 344443
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=2.2e-22 Score=157.57 Aligned_cols=159 Identities=29% Similarity=0.484 Sum_probs=131.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCC---CCeEEEEEeCCCCCCCccccC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQT---VNVKVIMATNRADTLDPALLR 78 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~v~vi~ttn~~~~ld~al~r 78 (173)
++.+|..|....|++|+|||+|.+...+....... ..+..+.++..+++.... .++++|++||.++.+|+++.+
T Consensus 102 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~ 178 (297)
T 3b9p_A 102 VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA---SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178 (297)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CC---SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH
T ss_pred HHHHHHHHHHcCCcEEEeccHHHhccccccCcchH---HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh
Confidence 57789999999999999999999997764332222 236667788888776443 579999999999999999999
Q ss_pred CCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc------------
Q 030674 79 PGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------ 145 (173)
Q Consensus 79 ~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------ 145 (173)
||+..++++.|+.++|..+++.++...... .+.++..++..|.||+++||..+++.|...+.++.
T Consensus 179 --R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~ 256 (297)
T 3b9p_A 179 --RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISA 256 (297)
T ss_dssp --HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCC
T ss_pred --hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 999999999999999999999998876543 34468889999999999999999999998888764
Q ss_pred CCccCHHHHHHHHHhhCCCC
Q 030674 146 RYVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 146 ~~~i~~~d~~~al~~~~p~~ 165 (173)
...|+.+||..|+...+|+.
T Consensus 257 ~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 257 MRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp CCCCCHHHHHHHTTSCCCSS
T ss_pred cCCcCHHHHHHHHHHcCCCC
Confidence 24799999999999999985
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=157.25 Aligned_cols=159 Identities=28% Similarity=0.450 Sum_probs=130.1
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC--CCCeEEEEEeCCCCCCCccccCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ--TVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
++.+|..|+...|+||||||+|.++..+.... .....++...|+..++++.. ..+++||+|||.++.+|+++++
T Consensus 196 ~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~- 271 (389)
T 3vfd_A 196 VRALFAVARELQPSIIFIDQVDSLLCERREGE---HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR- 271 (389)
T ss_dssp HHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT-
T ss_pred HHHHHHHHHhcCCeEEEEECchhhcccCCCcc---chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc-
Confidence 57899999999999999999999987663322 22345777788888886643 4579999999999999999999
Q ss_pred CCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc------------C
Q 030674 80 GRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKN------------R 146 (173)
Q Consensus 80 grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~------------~ 146 (173)
||+..++++.|+.++|..+|+.++...... .+.++..++..+.||++++|..+++.|...++++. .
T Consensus 272 -R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~ 350 (389)
T 3vfd_A 272 -RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEM 350 (389)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCC
T ss_pred -CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhc
Confidence 999999999999999999999999775543 34468899999999999999999999998888872 3
Q ss_pred CccCHHHHHHHHHhhCCCC
Q 030674 147 YVILPKDFEKGYRTNVKKP 165 (173)
Q Consensus 147 ~~i~~~d~~~al~~~~p~~ 165 (173)
..|+.+||..++....|+.
T Consensus 351 ~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 351 RNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp CCCCHHHHHHHHHHCCCSS
T ss_pred CCcCHHHHHHHHHHcCCCC
Confidence 4799999999999999875
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.81 E-value=1.2e-18 Score=153.20 Aligned_cols=162 Identities=39% Similarity=0.608 Sum_probs=142.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGR 81 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gr 81 (173)
++.+|+.+....|+++||||+|.++.+++.. ......++...+++.++++.....+++|++||.++.+|+++.++||
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccc
Confidence 5789999999999999999999999876332 2233457888999999998888899999999999999999999999
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC---------------
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR--------------- 146 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~--------------- 146 (173)
|+..++++.|+.++|.++++.++.+..+..+.++..++..+.||+++|+..++.+|...+.++..
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~ 442 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVM 442 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhh
Confidence 99999999999999999999999988888888999999999999999999999999888776532
Q ss_pred --CccCHHHHHHHHHhhCCCCC
Q 030674 147 --YVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 147 --~~i~~~d~~~al~~~~p~~~ 166 (173)
..++.+|+..++....|+..
T Consensus 443 ~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 443 NSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp TTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhhhhhhhhhhccccccCchhh
Confidence 34788899999999888754
No 29
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.74 E-value=8.4e-18 Score=108.28 Aligned_cols=83 Identities=67% Similarity=1.089 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCCCCcccc
Q 030674 91 PDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFE 170 (173)
Q Consensus 91 p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~~~~~~ 170 (173)
.|.++|.+||+.++++.++.+++++..+|..|+||||+||.++|++|+..|++++...|+.+||..|+++++|+..++++
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~ 80 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHE 80 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHH
Confidence 37899999999999999888889999999999999999999999999999999998899999999999999999888888
Q ss_pred cCC
Q 030674 171 FYK 173 (173)
Q Consensus 171 ~~~ 173 (173)
+|+
T Consensus 81 ~y~ 83 (83)
T 3aji_B 81 FYK 83 (83)
T ss_dssp ---
T ss_pred hcC
Confidence 885
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.73 E-value=6.7e-19 Score=138.19 Aligned_cols=124 Identities=24% Similarity=0.265 Sum_probs=90.6
Q ss_pred HHHHHHHH----HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-----------CCCCeEEEEEe
Q 030674 2 VRDVFRLA----KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMAT 66 (173)
Q Consensus 2 l~~if~~A----~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~tt 66 (173)
++.+|..| +..+||||+|||+|.+++.++.... .......+.+.|++.+|+.. ..++++||+||
T Consensus 84 i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~tt 162 (293)
T 3t15_A 84 IRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG 162 (293)
T ss_dssp HHHHHHHHHHHHTTSSCCCEEEECCC---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCcc-ccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEec
Confidence 56788888 5778999999999999975532111 11123456678888887443 45679999999
Q ss_pred CCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHH
Q 030674 67 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAA 132 (173)
Q Consensus 67 n~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~ 132 (173)
|+++.+|++++|||||+..+++ |+.++|.+|++.++... .+++..++..+.||++++|..
T Consensus 163 N~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 163 NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp SSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred CCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999999999999999984 69999999999888643 467889999999999999974
No 31
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=105.36 Aligned_cols=76 Identities=29% Similarity=0.495 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
|+|+.++|.+||+.++++..+.+++++..+|..|+||||+||.++|++|+..|++++...|+.+||..|++++..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 7899999999999999998888889999999999999999999999999999999999999999999999998754
No 32
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=107.34 Aligned_cols=78 Identities=27% Similarity=0.455 Sum_probs=73.9
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
+-.+|+.++|.+||+.++++..+.+++++..||..|+||||+||+++|++|+..|+++....|+.+||..|+++++|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 447999999999999999998888889999999999999999999999999999999998899999999999999885
No 33
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.66 E-value=5e-16 Score=101.01 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCCCC
Q 030674 92 DRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPD 166 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~~~ 166 (173)
|.++|.+||+.++++.++.+++|+..+|..|+||||+||.++|++|+..|++++...|+.+||..|++++.++..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcc
Confidence 568999999999999998889999999999999999999999999999999999999999999999999998753
No 34
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.62 E-value=4.2e-16 Score=100.05 Aligned_cols=80 Identities=50% Similarity=0.788 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC-CC-CCccccc
Q 030674 94 RQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV-KK-PDTDFEF 171 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~-p~-~~~~~~~ 171 (173)
++|.+||+.++++.++.+++++..+|..|+||||+||.++|++|+..|++++...|+.+||..|++++. |+ ..+++++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 479999999999888888899999999999999999999999999999999988999999999999996 43 4568888
Q ss_pred CC
Q 030674 172 YK 173 (173)
Q Consensus 172 ~~ 173 (173)
|+
T Consensus 81 y~ 82 (82)
T 2dzn_B 81 YK 82 (82)
T ss_dssp --
T ss_pred hC
Confidence 86
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.42 E-value=2.4e-16 Score=130.52 Aligned_cols=126 Identities=14% Similarity=0.225 Sum_probs=75.7
Q ss_pred HHHHHHHH---HHcCCeEEEEcccccccccccCCCCCCchH-HH---------------HHHHHHHHhcc--CCCCCCCe
Q 030674 2 VRDVFRLA---KENAPAIIFIDEVDAIATARFDAQTGADRE-VQ---------------RILMELLNQMD--GFDQTVNV 60 (173)
Q Consensus 2 l~~if~~A---~~~~P~il~ide~d~l~~~~~~~~~~~~~~-~~---------------~~~~~ll~~l~--~~~~~~~v 60 (173)
++.+|..| +..+||||||||+|.+++++.....+.... .. ++.+.++..++ ++...+.+
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 191 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVI 191 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEE
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEE
Confidence 56789999 788899999999999998885432221110 01 12233555554 33445567
Q ss_pred EEEEEeCCCCCCCccccCCCCccc--eecCCCCC--HHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHH
Q 030674 61 KVIMATNRADTLDPALLRPGRLDR--KIEFPLPD--RRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQE 136 (173)
Q Consensus 61 ~vi~ttn~~~~ld~al~r~grf~~--~i~~~~p~--~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~ 136 (173)
+|++|||.++.+|+++.||||||. .+++|.|+ .++|.++++.+.. .+++.++..|+| ++||.++|..
T Consensus 192 ~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 192 YIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp EEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----------------
T ss_pred EEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 778999999999999999999999 66777774 5778888765542 268899999999 9999999854
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.38 E-value=1.6e-12 Score=104.09 Aligned_cols=130 Identities=13% Similarity=0.185 Sum_probs=103.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEe-----------CCCCCCCccccCCCCc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT-----------NRADTLDPALLRPGRL 82 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt-----------n~~~~ld~al~r~grf 82 (173)
|+||+|||+|.+.. ...+.|+..++. ...+++++++. |.+..+++++++ ||
T Consensus 190 ~~vl~IDEi~~l~~--------------~~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI--------------ESFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp BCEEEEESGGGSBH--------------HHHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred CceEEEhhccccCh--------------HHHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 78999999998752 345566666764 33356555554 358899999999 99
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
.. ++|++|+.+++..+++..+...... ++-.+..++..+.|.+++++.+++..|...|...+...|+.+++.+++..+
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 77 8999999999999999888764443 223477788888878999999999999999988888899999999999875
Q ss_pred C
Q 030674 162 V 162 (173)
Q Consensus 162 ~ 162 (173)
.
T Consensus 331 ~ 331 (368)
T 3uk6_A 331 L 331 (368)
T ss_dssp B
T ss_pred c
Confidence 4
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.26 E-value=4.5e-12 Score=97.79 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CCCCeEEEEEeCCCCCCCc-cccCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QTVNVKVIMATNRADTLDP-ALLRP 79 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~v~vi~ttn~~~~ld~-al~r~ 79 (173)
++.+|..+....|++|+|||+|.+++.+..... .. ..++..|...+++.. ...++++|+|||.++.+++ .+.+
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-~~---~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~- 187 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR-FS---NLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN- 187 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB-CC---HHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT-
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChh-HH---HHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc-
Confidence 467888888788999999999999876532211 11 355666666777654 3457889999999999998 5666
Q ss_pred CCccceecCCCCCH-HHHHHHHHHHHccCCCCCcCCHHHHhcCCCCC----CHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 030674 80 GRLDRKIEFPLPDR-RQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKI----SAAEIAAICQEAGMHAVRKNRYVILPKDF 154 (173)
Q Consensus 80 grf~~~i~~~~p~~-~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~----s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 154 (173)
||+..+++|+++. ++...++.. ...+ ++.++..++..+.|| ..+++.++++.|...+ .....+++
T Consensus 188 -rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~~~ 257 (272)
T 1d2n_A 188 -AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVRKF 257 (272)
T ss_dssp -TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHHHH
T ss_pred -ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHHHHH
Confidence 9999999987764 444444443 2233 334578899999998 6788888877765322 33566788
Q ss_pred HHHHHhhCCCCCc
Q 030674 155 EKGYRTNVKKPDT 167 (173)
Q Consensus 155 ~~al~~~~p~~~~ 167 (173)
.+++.....++.+
T Consensus 258 ~~~l~~~~~~~~~ 270 (272)
T 1d2n_A 258 LALLREEGASPLD 270 (272)
T ss_dssp HHHHHHTSCCSCC
T ss_pred HHHHHHcCCcccC
Confidence 8888877766544
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.24 E-value=1e-11 Score=97.06 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPALL 77 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al~ 77 (173)
+.+|..+ .++||+|||+|.++..+.. ...+ ....+.|+..++. ...++.+|++||.+. .++++++
T Consensus 123 ~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~---~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 123 KEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYG---QEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp HHHHHHH---TTSEEEEETGGGSCCCC-----CCT---HHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred HHHHHhc---CCCEEEEEChhhhccCCCc--cccc---HHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHH
Confidence 4556665 5789999999999865522 1112 3566677777773 445788899987653 3579999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcC------CCCC-CHHHHHHHHHHHHHHHHHh
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSR------PDKI-SAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~------t~g~-s~~di~~l~~~a~~~a~~~ 144 (173)
+ ||+..++|++|+.+++..|++.++...... +.-.+..++.. ..++ .++++.+++..|...+..+
T Consensus 193 ~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 193 S--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp H--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred H--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999876543 22223444443 1333 4899999999998665544
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.23 E-value=1.4e-10 Score=91.84 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=105.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC----------------CCCCeEEEEEeCCCCCCCcc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~a 75 (173)
..+++|||||+|.+.. .....++..++.-. ...++.+|++||....++++
T Consensus 105 ~~~~vl~lDEi~~l~~--------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~ 170 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSP--------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNP 170 (338)
T ss_dssp CTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHH
T ss_pred cCCCEEEEechhhcCH--------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHH
Confidence 3589999999998752 23334444444321 01248999999999999999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 154 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 154 (173)
+++ ||+..+++++|+.+++..+++.++...... +...+..++..+.| .++++.+++..+...+...+...++.+++
T Consensus 171 L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 247 (338)
T 3pfi_A 171 LRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRA 247 (338)
T ss_dssp HHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHH
Confidence 999 999999999999999999999998776543 33346778886665 67999999999988887777778999999
Q ss_pred HHHHHhhCCC
Q 030674 155 EKGYRTNVKK 164 (173)
Q Consensus 155 ~~al~~~~p~ 164 (173)
..++......
T Consensus 248 ~~~~~~~~~~ 257 (338)
T 3pfi_A 248 NEALNSLGVN 257 (338)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhCCc
Confidence 9998875543
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=1.1e-10 Score=93.24 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=105.8
Q ss_pred HHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC---CCCCccccCC
Q 030674 4 DVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLRP 79 (173)
Q Consensus 4 ~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (173)
.++..+... .|++|+|||+|.+...+ .....+..++..++......++.+|++||.+ +.+++.+.+
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~- 189 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS- 189 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT-
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh-
Confidence 344444333 38999999999987432 1235666677766654325588999999988 788999998
Q ss_pred CCccc-eecCCCCCHHHHHHHHHHHHcc----CCCCCcCCHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHhcCCccCH
Q 030674 80 GRLDR-KIEFPLPDRRQKRLVFQVCTAK----MNLSDEVDLEDYVSRPD---KISAAEIAAICQEAGMHAVRKNRYVILP 151 (173)
Q Consensus 80 grf~~-~i~~~~p~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~---g~s~~di~~l~~~a~~~a~~~~~~~i~~ 151 (173)
||.. .++|++|+.+++.++++..+.. ...++ -.+..++..+. | .++.+.+++..|...+...+...++.
T Consensus 190 -r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~ 266 (387)
T 2v1u_A 190 -SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRR 266 (387)
T ss_dssp -TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred -cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 9886 8999999999999999988764 12222 23555666655 5 57888899999988887777788999
Q ss_pred HHHHHHHHhhC
Q 030674 152 KDFEKGYRTNV 162 (173)
Q Consensus 152 ~d~~~al~~~~ 162 (173)
+++..++....
T Consensus 267 ~~v~~a~~~~~ 277 (387)
T 2v1u_A 267 EHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.18 E-value=7.5e-12 Score=105.72 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC-------------CCCeEEEEEeCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ-------------TVNVKVIMATNRA 69 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------------~~~v~vi~ttn~~ 69 (173)
...|..|....| |+||||+|.+...+.. ...+.|+..++.... .+++++|+|||.+
T Consensus 166 ~~~~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 166 IQGMKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp HHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHHHHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 445666655655 9999999999865311 133456666664321 1578999999999
Q ss_pred CCCCccccCCCCccceecCCCCCHHHHHHHHHHHHc-----cCCCCC------cCCHHHHhcC-CCCCCHHHHHHHHHH-
Q 030674 70 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTA-----KMNLSD------EVDLEDYVSR-PDKISAAEIAAICQE- 136 (173)
Q Consensus 70 ~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~-----~~~~~~------~~~~~~la~~-t~g~s~~di~~l~~~- 136 (173)
+.+|++|++ ||+ +|+|+.|+.++|..|++.++. ...+.. +-.+..++.. +.....++|++.+..
T Consensus 235 ~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~ 311 (543)
T 3m6a_A 235 ATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAI 311 (543)
T ss_dssp TTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred ccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHH
Confidence 999999999 995 799999999999999998762 222221 1123444442 222345555555444
Q ss_pred ---HHHHHHHh--cCCccCHHHHHHHHHhhCC
Q 030674 137 ---AGMHAVRK--NRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 137 ---a~~~a~~~--~~~~i~~~d~~~al~~~~p 163 (173)
+...+.+. ....|+.+++.+++.....
T Consensus 312 ~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 312 CRKAAKAIVAEERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HHHHHHHHHTTCCSCCEECTTTTHHHHCSCCS
T ss_pred HHHHHHHHHhcCCcceecCHHHHHHHhCCccc
Confidence 44444333 2447999999999865543
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.16 E-value=2.5e-10 Score=89.67 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=100.4
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC----------------CCCCeEEEEEeCCCCCCCcc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----------------QTVNVKVIMATNRADTLDPA 75 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~v~vi~ttn~~~~ld~a 75 (173)
..+++|+|||+|.+... ....++..++... ...++.+|++||.+..++++
T Consensus 89 ~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~ 154 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAP 154 (324)
T ss_dssp CTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCS
T ss_pred cCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHH
Confidence 45899999999987521 1222333333210 11358899999999999999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDF 154 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~ 154 (173)
+.+ ||+.++.+++|+.+++..+++.++...... +.-.+..++..+.| .++++.+++..+...+...+...++.+++
T Consensus 155 l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~ 231 (324)
T 1hqc_A 155 LLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERA 231 (324)
T ss_dssp TTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHH
T ss_pred HHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 998 999999999999999999999998765443 22346778888866 57899999998877666566667999999
Q ss_pred HHHHHhhC
Q 030674 155 EKGYRTNV 162 (173)
Q Consensus 155 ~~al~~~~ 162 (173)
..++....
T Consensus 232 ~~~~~~~~ 239 (324)
T 1hqc_A 232 LEALAALG 239 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88887654
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=2.4e-10 Score=85.03 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=94.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.|.+|+|||+|.+.. .....++..++. ...++.+|++||.+..+++++.+ |+ ..+++++|+
T Consensus 126 ~~~vlviDe~~~l~~--------------~~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~ 186 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALD 186 (250)
T ss_dssp SSEEEEEETGGGSCH--------------HHHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCC
T ss_pred CceEEEEECcccccH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCC
Confidence 479999999998631 234556666653 34578899999999999999988 75 689999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
.++..++++.++...... +.-.+..++..+.| .++.+.++++.+... +...|+.+++.+++
T Consensus 187 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 999999999988754433 22346788888988 899999999887532 33479999998876
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.13 E-value=1.5e-10 Score=95.45 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=97.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC---CCccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT---LDPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~---ld~al~r~grf~--~~i~ 87 (173)
.|.+|+|||+|.+...+ .... .|+..++.+...+..++|+|.+.+.. +++.+++ ||. ..+.
T Consensus 194 ~~~vL~IDEi~~l~~~~---------~~q~---~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~ 259 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT---------GVQT---ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAK 259 (440)
T ss_dssp TCSEEEEECGGGGSSCH---------HHHH---HHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCB
T ss_pred CCCEEEEeCcccccCCh---------HHHH---HHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEE
Confidence 68999999999987432 1112 23333322223345555555554554 8899999 886 8899
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+++|+.++|..+++..+....+. ++-.+..++..+.| +++++..++..+...+...+. .|+.+++.++++...+
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFIK 334 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTTC
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhh
Confidence 99999999999999888644333 22236778888875 899999999999888766554 7999999999998774
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.11 E-value=2.1e-10 Score=89.31 Aligned_cols=146 Identities=19% Similarity=0.222 Sum_probs=100.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--------CCCCeEEEEE----eCCCCCCCccccCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMA----TNRADTLDPALLRPG 80 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~t----tn~~~~ld~al~r~g 80 (173)
.++||+|||+|.+...... .+.+.....+.+.|+..+++.. ...++++|++ ++.+..+++++.+
T Consensus 116 ~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~-- 191 (310)
T 1ofh_A 116 QNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG-- 191 (310)
T ss_dssp HHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--
T ss_pred CCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--
Confidence 4799999999999875532 1222222344667777777531 2346888888 5678899999998
Q ss_pred CccceecCCCCCHHHHHHHHHH----HH-------ccCCCC---CcCCHHHHhcCC-------CCCCHHHHHHHHHHHHH
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQV----CT-------AKMNLS---DEVDLEDYVSRP-------DKISAAEIAAICQEAGM 139 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~----~l-------~~~~~~---~~~~~~~la~~t-------~g~s~~di~~l~~~a~~ 139 (173)
||+..++|++|+.+++.++++. ++ ...... ++-.+..++..+ .+..++++.++++.+..
T Consensus 192 R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 192 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 9999999999999999999983 21 112211 122345566655 36789999999999865
Q ss_pred HHHHhc-----CC-ccCHHHHHHHHHhhC
Q 030674 140 HAVRKN-----RY-VILPKDFEKGYRTNV 162 (173)
Q Consensus 140 ~a~~~~-----~~-~i~~~d~~~al~~~~ 162 (173)
.+.... .. .|+.+++..++....
T Consensus 272 ~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 272 KISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred hhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 443222 11 499999999998654
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=5e-10 Score=82.38 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=90.9
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..|.+|+|||+|.+... ....++..++. ...++.+|++||.++.+++++.+ ||. .+++++|
T Consensus 101 ~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~ 161 (226)
T 2chg_A 101 APFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPV 161 (226)
T ss_dssp CSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCC
T ss_pred cCceEEEEeChhhcCHH--------------HHHHHHHHHHh--cCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCC
Confidence 45899999999987531 22334444442 24467889999999999999999 987 8999999
Q ss_pred CHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 92 DRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
+.++...+++..+...... +.-.+..++..+.| .++.+.+++..+...+ ..|+.+++.+++.
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999888654433 22345667776655 6777777777665443 5799999999875
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.06 E-value=5.9e-10 Score=97.30 Aligned_cols=150 Identities=19% Similarity=0.259 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
++.+|+.+....++||||||+|.+++.++... ... . ..+.+..+....++.+|++||.++ .+|+++
T Consensus 267 l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~--~~~---~----~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQV---D----AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS--CHH---H----HHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSS
T ss_pred HHHHHHHHHhcCCeEEEEechHHHhhcCCCCc--chH---H----HHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHH
Confidence 56788888877899999999999987653211 111 1 222333334456788999998643 688999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccC----CCC-CcCCHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHH---
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM----NLS-DEVDLEDYVSRP-----DKISAAEIAAICQEAGMHAVR--- 143 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~----~~~-~~~~~~~la~~t-----~g~s~~di~~l~~~a~~~a~~--- 143 (173)
.+ ||+ .+.++.|+.++|.++++.+...+ ... .+-.+..++..+ ..+.|..+..++++|...+..
T Consensus 338 ~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~ 414 (758)
T 1r6b_X 338 AR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV 414 (758)
T ss_dssp GG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS
T ss_pred Hh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc
Confidence 99 998 69999999999999999877542 221 112244444443 456788889999988765544
Q ss_pred -hcCCccCHHHHHHHHHhhCC
Q 030674 144 -KNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 144 -~~~~~i~~~d~~~al~~~~p 163 (173)
.....++.+|+..++.....
T Consensus 415 ~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 415 SKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp CCCCCSCCHHHHHHHHHHHSC
T ss_pred cccCCccCHHHHHHHHHHhcC
Confidence 23457999999999988763
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.05 E-value=2.4e-10 Score=85.53 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=90.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCe-EEEEEeCCCC---CCCccccCCCCcc--cee
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNV-KVIMATNRAD---TLDPALLRPGRLD--RKI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~vi~ttn~~~---~ld~al~r~grf~--~~i 86 (173)
.|.+|+|||+|.+.... .... .++..++.......+ +|++++..+. .+++++.+ ||. ..+
T Consensus 104 ~~~vliiDe~~~~~~~~---------~~~~---~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i 169 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP---------LWEE---AIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTY 169 (242)
T ss_dssp GSSEEEEETGGGGTTCH---------HHHH---HHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEE
T ss_pred CCCEEEEeccccccCCH---------HHHH---HHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceE
Confidence 47899999999875321 0112 233333222223344 5555554454 45577888 876 899
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 87 EFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 87 ~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
++++|+.+++.++++.++...... +.-.+..++..+.| .++++.+++..+...+...+ ..|+.+++.+++.
T Consensus 170 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 170 QLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999999999999999988755433 22346678887766 89999999999988775554 4699999998875
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.99 E-value=2.8e-09 Score=84.20 Aligned_cols=134 Identities=19% Similarity=0.142 Sum_probs=95.6
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC---------CCCCCeEEEEEeCCCC-----CCCccccCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRAD-----TLDPALLRPG 80 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~~-----~ld~al~r~g 80 (173)
+||+|||+|.+.+ ...+.++..++.- ....++++|+|+|..+ .+++++++
T Consensus 111 ~vl~iDEi~~~~~--------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 111 NFILADEVNRSPA--------------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred cEEEEEccccCCH--------------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 7999999997532 2333444444321 1234678888888443 38999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHccCCCC-----------------------CcCCHHHHhcC----------------
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-----------------------DEVDLEDYVSR---------------- 121 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~~~~~-----------------------~~~~~~~la~~---------------- 121 (173)
||+..++++.|+.++|.+|++..+...... ++-.+..++..
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~ 254 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEA 254 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHH
T ss_pred heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999887653211 11012222221
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 122 ---PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 122 ---t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
..|.|++.+..+++.|...|...++..++.+|+.+++..+..+
T Consensus 255 ~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 255 SYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred cccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 1367999999999999988888888889999999999877644
No 50
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.98 E-value=2.5e-09 Score=85.19 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=102.3
Q ss_pred HHHHHHHHHcC-CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC---CCCCccccC
Q 030674 3 RDVFRLAKENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLR 78 (173)
Q Consensus 3 ~~if~~A~~~~-P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r 78 (173)
+.+++...... |++|+|||+|.+....+ . ..+..++..++.+ ...++.+|++||.+ ..+++.+.+
T Consensus 117 ~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~---~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~ 185 (386)
T 2qby_A 117 RRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------D---DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS 185 (386)
T ss_dssp HHHHHHHHTCCSCEEEEEETHHHHHHSSC-------S---THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH
T ss_pred HHHHHHHhccCCeEEEEEcChhhhhccCc-------C---HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc
Confidence 34444444444 99999999999874321 0 3455666666554 44578999999987 567888888
Q ss_pred CCCcc-ceecCCCCCHHHHHHHHHHHHcc----CCCCCcCCHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHhcCCccC
Q 030674 79 PGRLD-RKIEFPLPDRRQKRLVFQVCTAK----MNLSDEVDLEDYVSRPD---KISAAEIAAICQEAGMHAVRKNRYVIL 150 (173)
Q Consensus 79 ~grf~-~~i~~~~p~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~---g~s~~di~~l~~~a~~~a~~~~~~~i~ 150 (173)
||. ..+++++++.++..++++..+.. ....+ -.+..++..+. | .++.+.+++..+...+...+...++
T Consensus 186 --r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~ 261 (386)
T 2qby_A 186 --SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD-NVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVK 261 (386)
T ss_dssp --TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH-HHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred --cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccC
Confidence 776 48999999999999999987653 12222 22445555554 4 5777778999998888777777899
Q ss_pred HHHHHHHHHhhC
Q 030674 151 PKDFEKGYRTNV 162 (173)
Q Consensus 151 ~~d~~~al~~~~ 162 (173)
.+++..++....
T Consensus 262 ~~~v~~a~~~~~ 273 (386)
T 2qby_A 262 EEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.94 E-value=7e-09 Score=82.08 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=92.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC----C---C----CCCCeEEEEEeCCCC-CCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG----F---D----QTVNVKVIMATNRAD-TLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~----~---~----~~~~v~vi~ttn~~~-~ld~al~r~gr 81 (173)
+++|+|||+|.+.. ...+.|+..++. + . ...++.+|+|||..+ .+++++++ |
T Consensus 145 ~~vl~iDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R 208 (350)
T 1g8p_A 145 RGYLYIDECNLLED--------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--R 208 (350)
T ss_dssp TEEEEETTGGGSCH--------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--T
T ss_pred CCEEEEeChhhCCH--------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--h
Confidence 78999999998753 122334443331 1 1 113689999999744 89999999 9
Q ss_pred ccceecCCCC-CHHHHHHHHHHHHc-------------------------------cCCCCCcCCHHHHhcCC---CCCC
Q 030674 82 LDRKIEFPLP-DRRQKRLVFQVCTA-------------------------------KMNLSDEVDLEDYVSRP---DKIS 126 (173)
Q Consensus 82 f~~~i~~~~p-~~~~R~~il~~~l~-------------------------------~~~~~~~~~~~~la~~t---~g~s 126 (173)
|+..+++++| +.++|..|++..+. ...++++ .+..++..+ .+-+
T Consensus 209 ~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~ 287 (350)
T 1g8p_A 209 FGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDG 287 (350)
T ss_dssp CSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCS
T ss_pred cceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCC
Confidence 9999999999 58888888866321 1122221 233333333 2237
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
++.+.++++.|...|...++..|+.+|+.+++..+..
T Consensus 288 ~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 288 LRGELTLLRSARALAALEGATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHh
Confidence 8999999999999998888878999999999976543
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=5.3e-09 Score=83.68 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=103.1
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCC--CCCeEEEEEeCCC---CCCCccccCCCCccc-e
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQ--TVNVKVIMATNRA---DTLDPALLRPGRLDR-K 85 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~vi~ttn~~---~~ld~al~r~grf~~-~ 85 (173)
..|.+|+|||+|.+- ...+..|+..++.+.. ..++.+|++||.+ +.+++.+.+ ||.. .
T Consensus 124 ~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~ 187 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLA--------------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYV 187 (389)
T ss_dssp TCCEEEEEETGGGSC--------------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCE
T ss_pred CCeEEEEEECccccc--------------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCce
Confidence 348999999999871 1455566666654432 2488999999988 778888887 8875 8
Q ss_pred ecCCCCCHHHHHHHHHHHHcc----CCCCCcCCHHHHhcCCC--------CCCHHHHHHHHHHHHHHHHHhcCCccCHHH
Q 030674 86 IEFPLPDRRQKRLVFQVCTAK----MNLSDEVDLEDYVSRPD--------KISAAEIAAICQEAGMHAVRKNRYVILPKD 153 (173)
Q Consensus 86 i~~~~p~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~--------g~s~~di~~l~~~a~~~a~~~~~~~i~~~d 153 (173)
+.|++++.++..++++..+.. ..+ ++-.+..++..+. +=.++.+.+++..|...+...+...++.++
T Consensus 188 i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 266 (389)
T 1fnn_A 188 IRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 266 (389)
T ss_dssp EECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 999999999999999988764 122 2234566777773 226788899999999888887878899999
Q ss_pred HHHHHHhhCCC
Q 030674 154 FEKGYRTNVKK 164 (173)
Q Consensus 154 ~~~al~~~~p~ 164 (173)
+..++......
T Consensus 267 v~~~~~~~~~~ 277 (389)
T 1fnn_A 267 VRKSSKEVLFG 277 (389)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHhhh
Confidence 99999887654
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=4.7e-09 Score=84.03 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHH-HHHHHHhccCCCCCCCeEEEEEeCCC---CCCCccccCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRI-LMELLNQMDGFDQTVNVKVIMATNRA---DTLDPALLRP 79 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~~v~vi~ttn~~---~~ld~al~r~ 79 (173)
.++..++.. +.+|+|||+|.+...+. . .. +..++... .++.+|++||.+ +.+++.+.+
T Consensus 125 ~l~~~l~~~-~~vlilDEi~~l~~~~~------~----~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s- 186 (384)
T 2qby_B 125 KIKNGTRNI-RAIIYLDEVDTLVKRRG------G----DIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS- 186 (384)
T ss_dssp HHHHHHSSS-CEEEEEETTHHHHHSTT------S----HHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH-
T ss_pred HHHHHhccC-CCEEEEECHHHhccCCC------C----ceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh-
Confidence 344444333 34999999999874320 0 22 33343322 689999999987 788999998
Q ss_pred CCccceecCCCCCHHHHHHHHHHHHcc----CCCCCcCCHHHHhcCCCC--CCHHHHHHHHHHHHHHHHHhcCCccCHHH
Q 030674 80 GRLDRKIEFPLPDRRQKRLVFQVCTAK----MNLSDEVDLEDYVSRPDK--ISAAEIAAICQEAGMHAVRKNRYVILPKD 153 (173)
Q Consensus 80 grf~~~i~~~~p~~~~R~~il~~~l~~----~~~~~~~~~~~la~~t~g--~s~~di~~l~~~a~~~a~~~~~~~i~~~d 153 (173)
||...++|++|+.++..++++..+.. ..+++ -.+..++..+.+ =.++.+.+++..|...+. +...++.++
T Consensus 187 -r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~ 262 (384)
T 2qby_B 187 -SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD-EILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEH 262 (384)
T ss_dssp -TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHH
T ss_pred -cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHH
Confidence 99889999999999999999988763 22222 235566666542 245666778888876665 556799999
Q ss_pred HHHHHHhhC
Q 030674 154 FEKGYRTNV 162 (173)
Q Consensus 154 ~~~al~~~~ 162 (173)
+..++....
T Consensus 263 v~~~~~~~~ 271 (384)
T 2qby_B 263 VDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987764
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.83 E-value=1e-08 Score=84.77 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=99.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEE---------eC---CCCCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA---------TN---RADTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t---------tn---~~~~ld~al~r~gr 81 (173)
|.|++|||+|.+.. ...+.|+..++. +..++++++| |+ .++.|++.+++ |
T Consensus 296 ~~VliIDEa~~l~~--------------~a~~aLlk~lEe--~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI--------------ECFTYLHRALES--SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCBH--------------HHHHHHHHHTTS--TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhhc--cCCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 46999999998842 567788888884 3334655565 33 28899999999 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRP-DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t-~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
|.. +.|++++.++..++++..+...... ++-.+..++..+ .| +++..-.+++.|...|...+...|+.+|+..++.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 988 5999999999999999876533332 222355666666 45 8999999999999899888888999999999987
Q ss_pred hhC
Q 030674 160 TNV 162 (173)
Q Consensus 160 ~~~ 162 (173)
.+.
T Consensus 436 ~~~ 438 (456)
T 2c9o_A 436 LFY 438 (456)
T ss_dssp HSC
T ss_pred Hhc
Confidence 754
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.83 E-value=4.6e-09 Score=86.71 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=96.7
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEe--CCCCCCCcc
Q 030674 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT--NRADTLDPA 75 (173)
Q Consensus 2 l~~if~~A~~----~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt--n~~~~ld~a 75 (173)
++.+|..|.. ..++||||||+|.+... ....|+..++. ..+.+|++| |....++++
T Consensus 91 ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCCCcccccCHH
Confidence 4566666653 35899999999988532 12235555653 346666655 334589999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC--------CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh--c
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS--------DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK--N 145 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~--------~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~--~ 145 (173)
+.+ |+. ++.|++|+.+++..+++..+...... ++-.+..++..+.| ..+++.++++.+...+... +
T Consensus 153 L~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~ 228 (447)
T 3pvs_A 153 LLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSG 228 (447)
T ss_dssp HHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTS
T ss_pred HhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCC
Confidence 999 886 67899999999999999998763211 11235667777555 7788888888887666423 3
Q ss_pred CCccCHHHHHHHHHhhCCC
Q 030674 146 RYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 146 ~~~i~~~d~~~al~~~~p~ 164 (173)
...|+.+++.+++......
T Consensus 229 ~~~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 229 KRVLKPELLTEIAGERSAR 247 (447)
T ss_dssp CEECCHHHHHHHHTCCCCC
T ss_pred CCccCHHHHHHHHhhhhhc
Confidence 4579999999998766543
No 56
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.82 E-value=2.5e-10 Score=94.01 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEE-eCCCCCCCccccCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA-TNRADTLDPALLRPG 80 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~t-tn~~~~ld~al~r~g 80 (173)
++.+|+.|....| +||+|.+.... ......++++.|++.+|++.+...+ +++ ||+++.||++|+|||
T Consensus 100 lr~lf~~a~~~~~----~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rgg 167 (444)
T 1g41_A 100 IRDLTDSAMKLVR----QQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQ 167 (444)
T ss_dssp HHHHHHHHHHHHH----HHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHhcch----hhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCC
Confidence 6778888877644 78887765322 1223358999999999998766554 455 999999999999999
Q ss_pred CccceecCCCCCHH-HHHHHH
Q 030674 81 RLDRKIEFPLPDRR-QKRLVF 100 (173)
Q Consensus 81 rf~~~i~~~~p~~~-~R~~il 100 (173)
|||+.|+++.|+.. .|.+|+
T Consensus 168 r~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 168 LDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------
T ss_pred CcceEEEEcCCCCccchhhhh
Confidence 99999999999987 788776
No 57
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.78 E-value=5.4e-08 Score=77.50 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=97.0
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKE----NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~----~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++. ...++.+|++|+.+..+++.+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 104 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp HHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------------HHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCeEEEEEECcchhcH--------------HHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHH
Confidence 4556666542 2368999999998742 234556666663 3457888899999999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 156 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~ 156 (173)
+ |+ ..+.+++|+.++...+++..+...+.. +.-.+..++..+.| .++++.++++.+...+ ...++.+++.+
T Consensus 168 s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~ 239 (373)
T 1jr3_A 168 S--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DGQVSTQAVSA 239 (373)
T ss_dssp T--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TTCBCHHHHHH
T ss_pred h--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CCcccHHHHHH
Confidence 8 76 689999999999999999888755443 22236678888877 7888888888775322 24578777766
Q ss_pred HHH
Q 030674 157 GYR 159 (173)
Q Consensus 157 al~ 159 (173)
++.
T Consensus 240 ~~~ 242 (373)
T 1jr3_A 240 MLG 242 (373)
T ss_dssp HTT
T ss_pred HhC
Confidence 553
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.78 E-value=1.3e-07 Score=75.08 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=85.1
Q ss_pred CeEEEEEeCCCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHH
Q 030674 59 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEA 137 (173)
Q Consensus 59 ~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a 137 (173)
++.++++|+.+..|++.+++ ||...+.+++|+.++..++++......... ++-.+..+|..+.| +++++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 999999999999999999999887654433 22346788998887 678999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 138 GMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 138 ~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
...|...+...|+.+++.+++....
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 8888777777899999999998764
No 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.77 E-value=1.6e-08 Score=80.98 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=99.5
Q ss_pred HHHHHHH----HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC-------------------CCCCC
Q 030674 3 RDVFRLA----KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF-------------------DQTVN 59 (173)
Q Consensus 3 ~~if~~A----~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------------------~~~~~ 59 (173)
+.+|..+ ....|+||||||+|.+...+.+...+.......+.+.|+..|++. -..++
T Consensus 102 ~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn 181 (363)
T 3hws_A 102 QKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 181 (363)
T ss_dssp HHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTS
T ss_pred HHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCC
Confidence 4555555 344689999999999998775554444444456788888888842 12345
Q ss_pred eEEEEEeCCC----------CC-----------------------------------CCccccCCCCccceecCCCCCHH
Q 030674 60 VKVIMATNRA----------DT-----------------------------------LDPALLRPGRLDRKIEFPLPDRR 94 (173)
Q Consensus 60 v~vi~ttn~~----------~~-----------------------------------ld~al~r~grf~~~i~~~~p~~~ 94 (173)
+++|+++|.. .. +.++|.. ||+..+.+++|+.+
T Consensus 182 ~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~ 259 (363)
T 3hws_A 182 ILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEE 259 (363)
T ss_dssp SEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHH
T ss_pred ceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHH
Confidence 6666666642 11 6778887 99999999999999
Q ss_pred HHHHHHHH----HHc-------cCCCC---CcCCHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHhcC-------CccCH
Q 030674 95 QKRLVFQV----CTA-------KMNLS---DEVDLEDYVS--RPDKISAAEIAAICQEAGMHAVRKNR-------YVILP 151 (173)
Q Consensus 95 ~R~~il~~----~l~-------~~~~~---~~~~~~~la~--~t~g~s~~di~~l~~~a~~~a~~~~~-------~~i~~ 151 (173)
++..|+.. ++. ..... ++-.+..++. ....+..++|.++++++...+..+.. ..|+.
T Consensus 260 ~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~ 339 (363)
T 3hws_A 260 ALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDE 339 (363)
T ss_dssp HHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCceeEEcH
Confidence 99999886 322 11211 1122455664 33556789999999999888776642 13666
Q ss_pred HHHHHH
Q 030674 152 KDFEKG 157 (173)
Q Consensus 152 ~d~~~a 157 (173)
+++.+.
T Consensus 340 ~~v~~~ 345 (363)
T 3hws_A 340 SVIDGQ 345 (363)
T ss_dssp HHTTCC
T ss_pred HHHhCc
Confidence 665443
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.76 E-value=6.6e-09 Score=81.86 Aligned_cols=132 Identities=11% Similarity=0.171 Sum_probs=90.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC---CCCccccCCCCcc--ceec
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD---TLDPALLRPGRLD--RKIE 87 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~---~ld~al~r~grf~--~~i~ 87 (173)
.|.+|+|||+|.+..++ .....+..+++.+ ...+..+++++++.+. .+++++.+ ||. ..++
T Consensus 98 ~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~---~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTL---YLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHH---HHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred CCCEEEEcCcccccCCh---------HHHHHHHHHHHHH---HHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 48999999999986432 1112222233322 2334567777777766 68999998 986 7799
Q ss_pred CCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHH---HHH-hcCCcc-CHHHHHHHHHhh
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMH---AVR-KNRYVI-LPKDFEKGYRTN 161 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~---a~~-~~~~~i-~~~d~~~al~~~ 161 (173)
+++ +.++|..+++..+...... ++-.+..++..+ -..+++.+++..+... +.+ .....+ +.+++.+++...
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHH
Confidence 999 9999999999998755443 223467788888 4778888888887654 111 222357 888888887653
No 61
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.76 E-value=3.5e-08 Score=84.16 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=95.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-----------CCCCeEEEEEeCCCC------------
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-----------QTVNVKVIMATNRAD------------ 70 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~v~vi~ttn~~~------------ 70 (173)
.+|++|||+|.+-. ...+.++..|+.-. -..++.+|+|||.+.
T Consensus 392 ~gil~IDEid~l~~--------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 392 GGIAVIDEIDKMRD--------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSEECCTTTTCCCS--------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCcEEeehhhhCCH--------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 58999999998642 23344555554211 124688999999887
Q ss_pred -CCCccccCCCCcc-ceecCCCCCHHHHHHHHHHHHccCCC-------CC-------------------cCCHHHHhcC-
Q 030674 71 -TLDPALLRPGRLD-RKIEFPLPDRRQKRLVFQVCTAKMNL-------SD-------------------EVDLEDYVSR- 121 (173)
Q Consensus 71 -~ld~al~r~grf~-~~i~~~~p~~~~R~~il~~~l~~~~~-------~~-------------------~~~~~~la~~- 121 (173)
.|++++++ ||| ..+..+.|+.+ ...|.++.+..... +. +...+.+...
T Consensus 458 i~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y 534 (595)
T 3f9v_A 458 INLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFF 534 (595)
T ss_dssp TCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHH
T ss_pred cCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 89999999 998 45666778878 88888887764321 00 0011112221
Q ss_pred -------------CCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 122 -------------PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 122 -------------t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
+.+.|++.+.++++.|...|..+++..++.+|+.+|++-+..
T Consensus 535 ~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 535 VEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp TTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999986654
No 62
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=6.9e-08 Score=76.31 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=91.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.||+|||+|.+... ..+.|+..++.. ..+..+|++||.++.+++++++ |+. .+.+++|+
T Consensus 133 ~~~vliiDE~~~l~~~--------------~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~ 193 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD--------------AQSALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALD 193 (353)
T ss_dssp SCEEEEETTGGGSCHH--------------HHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCC
T ss_pred CceEEEEECCCccCHH--------------HHHHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCC
Confidence 3569999999988531 224455555532 3356677788999999999999 886 79999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-ccCHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY-VILPKDFEKGYR 159 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~-~i~~~d~~~al~ 159 (173)
.++...+++..+...... ++-.+..++..+.| .++.+.++++.+...+.+.+.. .|+.+++..++.
T Consensus 194 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999887654433 22346778888877 4677777777766555443322 689999887765
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.69 E-value=1.3e-07 Score=73.54 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=87.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.+..+++++.+ |+. .+.+++|+
T Consensus 102 ~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~ 162 (319)
T 2chq_A 102 PFKIIFLDEADALTA--------------DAQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVP 162 (319)
T ss_dssp CCEEEEEETGGGSCH--------------HHHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCC
T ss_pred CceEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCC
Confidence 478999999998752 223446666653 34578899999999999999999 886 89999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.+++..+++..+...... +.-.+..++..+.| .++.+.++++.+... ...++.+++...+.
T Consensus 163 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 163 KEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp HHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 999999999988765543 22346677876655 555555655554321 23577777766554
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.68 E-value=2.6e-08 Score=77.59 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=83.8
Q ss_pred HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCC------------
Q 030674 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNR------------ 68 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~------------ 68 (173)
+...+++|+|||+|.+.. ...+.|+..++.-. .-.++++|+|||.
T Consensus 116 ~~~~~~vl~lDEi~~l~~--------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~ 181 (311)
T 4fcw_A 116 RRRPYSVILFDAIEKAHP--------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKG 181 (311)
T ss_dssp HHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSC
T ss_pred HhCCCeEEEEeChhhcCH--------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhccc
Confidence 344459999999998742 33445555554221 1136789999998
Q ss_pred --------------CCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCC-------CC---CcCCHHHHhcCCC-
Q 030674 69 --------------ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN-------LS---DEVDLEDYVSRPD- 123 (173)
Q Consensus 69 --------------~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~-------~~---~~~~~~~la~~t~- 123 (173)
...+++++.. ||+..+.+++|+.+++..|++.++.... .. ++-.+..++..+-
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (311)
T 4fcw_A 182 WPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYD 259 (311)
T ss_dssp CCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCB
T ss_pred ccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCC
Confidence 5578889998 9999999999999999999999886531 11 1123555666544
Q ss_pred -CCCHHHHHHHHHHHHHHHHHh
Q 030674 124 -KISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 124 -g~s~~di~~l~~~a~~~a~~~ 144 (173)
....++|.+++.++...+..+
T Consensus 260 ~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 260 PVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTTBTTTHHHHHHHHTHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHHHHH
Confidence 678899999999887665543
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.67 E-value=1.6e-07 Score=82.13 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
++.+|..+....|+||||| . . . ...+.++..+ ....+.+|++||..+ .+|+++
T Consensus 256 l~~~~~~~~~~~~~iLfiD-----~-~---~---------~~~~~L~~~l----~~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 256 LKKVMDEIRQAGNIILFID-----A-A---I---------DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp HHHHHHHHHTCCCCEEEEC-----C---------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred HHHHHHHHHhcCCEEEEEc-----C-c---h---------hHHHHHHHHH----hcCCEEEEeCCChHHHHHHhhccHHH
Confidence 5789999999899999999 1 0 0 1112232223 355799999999988 799999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCC-----HHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVD-----LEDYVS-----RPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~-----~~~la~-----~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
.+ || ..|.|+.|+.+++..||+.+...+.....+. +..++. .+.++.|.....++..|+..+...
T Consensus 314 ~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 314 ER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred Hh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 99 99 5699999999999999998876643222222 333333 346788899888998887665544
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.9e-07 Score=72.80 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=85.7
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.+..+++.+.+ |+. .+.+++|+
T Consensus 107 ~~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~ 167 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--------------GAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLS 167 (323)
T ss_dssp CCEEEEEESGGGSCH--------------HHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCC
T ss_pred CceEEEEECcccCCH--------------HHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCC
Confidence 378999999998753 123344555542 34567888889999999999998 775 89999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
.++..++++..+...... +.-.+..++..+.| .++.+.++++.+... . ..++.+++.+++..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~---~--~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG---H--GLVNADNVFKIVDS 230 (323)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---H--SSBCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc---C--CCcCHHHHHHHHCC
Confidence 999999999887654333 22345667777755 555555665555422 1 35788888776643
No 67
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.62 E-value=8.3e-08 Score=79.56 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~al 76 (173)
++.+|..++...|+||||| + .. ...+.|+..+ ....+.+|++||.++ .+|+++
T Consensus 256 ~~~~~~~~~~~~~~iLfiD-----~-~~------------~a~~~L~~~L----~~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 256 LKKVMDEIRQAGNIILFID-----A-AI------------DASNILKPSL----ARGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp HHHHHHHHHTCCCCEEEEC-----C---------------------CCCT----TSSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred HHHHHHHHHhcCCeEEEEe-----C-ch------------hHHHHHHHhh----cCCCEEEEecCCHHHHHHHhhcCHHH
Confidence 5788999988889999999 1 00 1112232223 345799999999988 699999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccCC----CC-CcCCHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHhc-
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LS-DEVDLEDYVSRP-----DKISAAEIAAICQEAGMHAVRKN- 145 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~----~~-~~~~~~~la~~t-----~g~s~~di~~l~~~a~~~a~~~~- 145 (173)
.+ ||. .|.|+.|+.+++..|++.++..+. .. ++-.+..++..+ ..+.|.....+++.|...+....
T Consensus 314 ~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~ 390 (468)
T 3pxg_A 314 ER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390 (468)
T ss_dssp HH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccC
Confidence 99 998 499999999999999999876632 21 112244444443 44567788888888775554443
Q ss_pred CCccCHHHHHHHHHh
Q 030674 146 RYVILPKDFEKGYRT 160 (173)
Q Consensus 146 ~~~i~~~d~~~al~~ 160 (173)
..+-.-.++.+.+..
T Consensus 391 ~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 391 TTPPNLKELEQKLDE 405 (468)
T ss_dssp SCCSSTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH
Confidence 223334444444443
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.60 E-value=9.7e-08 Score=84.50 Aligned_cols=130 Identities=16% Similarity=0.224 Sum_probs=80.8
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC----CCCccc
Q 030674 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD----TLDPAL 76 (173)
Q Consensus 2 l~~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~----~ld~al 76 (173)
++.+|..++.. .|+||||||+|.+.+.+.... .......+..+ ++ ..++.+|++||.++ .+|+++
T Consensus 251 l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~---l~----~~~i~~I~at~~~~~~~~~~d~aL 320 (854)
T 1qvr_A 251 LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPA---LA----RGELRLIGATTLDEYREIEKDPAL 320 (854)
T ss_dssp HHHHHHHHHTTCSSEEEEECCC----------------------HHH---HH----TTCCCEEEEECHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHH---Hh----CCCeEEEEecCchHHhhhccCHHH
Confidence 56788888765 689999999999986542211 11112222323 32 34677899998775 489999
Q ss_pred cCCCCccceecCCCCCHHHHHHHHHHHHccC----CCC-CcCCHHHHhc-----CCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 77 LRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM----NLS-DEVDLEDYVS-----RPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 77 ~r~grf~~~i~~~~p~~~~R~~il~~~l~~~----~~~-~~~~~~~la~-----~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
.+ ||+. +.++.|+.+++.++++.++..+ ... .+-.+..++. .+.+|.+.....++.+|...+...
T Consensus 321 ~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 321 ER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMA 395 (854)
T ss_dssp CS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred Hh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhh
Confidence 99 9986 9999999999999999877643 111 1112333444 346788999999998887666543
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=3.3e-08 Score=70.82 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=57.4
Q ss_pred HHHHHHHHH-HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAK-ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~-~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
++.++..+. ...|+||+|||+|.+...+...... .....+..++ + ..++.+|++||.++ .++++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~---~----~~~~~~i~~~~~~~~~~~~~~~~~ 172 (195)
T 1jbk_A 103 LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL---A----RGELHCVGATTLDEYRQYIEKDAA 172 (195)
T ss_dssp HHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH---H----TTSCCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh---c----cCCeEEEEeCCHHHHHHHHhcCHH
Confidence 345565443 3558999999999998654221111 1122333232 2 34677899998876 78999
Q ss_pred ccCCCCccceecCCCCCHHHHHHHH
Q 030674 76 LLRPGRLDRKIEFPLPDRRQKRLVF 100 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~~~~R~~il 100 (173)
+.+ ||+ .+++++|+.++|.+++
T Consensus 173 l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 173 LER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHH--Hhc-eeecCCCCHHHHHHHh
Confidence 999 998 6999999999998875
No 70
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.53 E-value=1.1e-07 Score=74.65 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=73.8
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|+|||+|.+.+ . ...+.|+..++. ...++.+|++||.+..+++++++ ||. +++|++|+
T Consensus 105 ~~~vliiDEi~~l~~----------~---~~~~~L~~~le~--~~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~ 166 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL----------A---ESQRHLRSFMEA--YSSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPT 166 (324)
T ss_dssp CEEEEEEESCCCGGG----------H---HHHHHHHHHHHH--HGGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCC
T ss_pred CCeEEEEECCcccCc----------H---HHHHHHHHHHHh--CCCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCC
Confidence 578999999998852 1 123345555542 23467889999999999999999 995 69999999
Q ss_pred HHHHHHHHHHHHcc-------CCCC-Cc-CCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAK-------MNLS-DE-VDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 93 ~~~R~~il~~~l~~-------~~~~-~~-~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.++|.++++.++.. .... ++ -.+..++..+.| ..+++.+.++.++ . ...++.+++...+.
T Consensus 167 ~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~----~--~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 167 DEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS----S--KGVLDAGILSLVTN 235 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG----G--GTCBCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh----c--cCCCCHHHHHHHhC
Confidence 99988776655432 1222 22 235667776554 3333444444443 2 23467776665543
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.52 E-value=1.4e-07 Score=78.90 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=87.1
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC--------CCCCCeEEEEEeCCCCC---CCccccCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF--------DQTVNVKVIMATNRADT---LDPALLRPGR 81 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~ttn~~~~---ld~al~r~gr 81 (173)
.|+||||||++.+-+ ...+.|+..|+.- ...+..++|++||.+.. ..+++.+ |
T Consensus 109 ~~~IL~IDEI~r~~~--------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--R 172 (500)
T 3nbx_X 109 EAEIVFLDEIWKAGP--------------AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--R 172 (500)
T ss_dssp GCSEEEEESGGGCCH--------------HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--T
T ss_pred cceeeeHHhHhhhcH--------------HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--H
Confidence 367999999975321 3445566666421 11122356778875322 3348999 9
Q ss_pred ccceecCCCCCH-HHHHHHHHHHHccC-------------------------CCCCcCCHH---HHh------cCCCCCC
Q 030674 82 LDRKIEFPLPDR-RQKRLVFQVCTAKM-------------------------NLSDEVDLE---DYV------SRPDKIS 126 (173)
Q Consensus 82 f~~~i~~~~p~~-~~R~~il~~~l~~~-------------------------~~~~~~~~~---~la------~~t~g~s 126 (173)
|...+++++|+. ++|..|++...... .++++ .++ .+. ....|.|
T Consensus 173 F~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 173 MLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp CCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccc
Confidence 999999999996 88899987654211 11111 012 222 1236899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
++.+..++..|...|...++..++.+|+. .+....
T Consensus 252 ~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred hhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 99999999999999999999899999998 544443
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=2.6e-07 Score=72.09 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=84.5
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|+|||+|.+.. ...+.|+..++. ...++.+|++||.++.+++++.+ |+. .+.+++|+
T Consensus 110 ~~~vliiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~ 170 (327)
T 1iqp_A 110 SFKIIFLDEADALTQ--------------DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLR 170 (327)
T ss_dssp SCEEEEEETGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCC
T ss_pred CCeEEEEeCCCcCCH--------------HHHHHHHHHHHh--cCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCC
Confidence 478999999998742 223445555553 34467888899999999999998 886 79999999
Q ss_pred HHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
.++...+++..+...... ++-.+..++..+.| .++.+.++++.+.. ....++.+++...+.
T Consensus 171 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~~~~i~~~~v~~~~~ 232 (327)
T 1iqp_A 171 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDKKITDENVFMVAS 232 (327)
T ss_dssp HHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----TCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----cCCCCCHHHHHHHHC
Confidence 999999999888765443 22345667776655 66666666665442 122466666655443
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.45 E-value=3.7e-07 Score=79.74 Aligned_cols=122 Identities=13% Similarity=0.233 Sum_probs=83.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCCCCC-----
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRADT----- 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~~~----- 71 (173)
+...+...++||||||+|.+-+ .+.+.|+..++.-. ...++.+|+|||.+..
T Consensus 572 ~~~~~~~~~~vl~lDEi~~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~ 637 (758)
T 3pxi_A 572 TEKVRRKPYSVVLLDAIEKAHP--------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKV 637 (758)
T ss_dssp HHHHHHCSSSEEEEECGGGSCH--------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHH
T ss_pred hHHHHhCCCeEEEEeCccccCH--------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHH
Confidence 3445556679999999996631 44555666555311 2246899999997654
Q ss_pred -------CCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhc--CCCCCCHHHHHH
Q 030674 72 -------LDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVS--RPDKISAAEIAA 132 (173)
Q Consensus 72 -------ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~--~t~g~s~~di~~ 132 (173)
+++++.. ||+..|.|++|+.+++..|++.++... ... ++-.+..++. ....+..++|++
T Consensus 638 ~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~ 715 (758)
T 3pxi_A 638 MGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRR 715 (758)
T ss_dssp HHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHH
T ss_pred HHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHH
Confidence 7888888 999999999999999999999887542 111 1123455655 445678899999
Q ss_pred HHHHHHHHHHH
Q 030674 133 ICQEAGMHAVR 143 (173)
Q Consensus 133 l~~~a~~~a~~ 143 (173)
+++++...+..
T Consensus 716 ~i~~~v~~~l~ 726 (758)
T 3pxi_A 716 AIQKHVEDRLS 726 (758)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987655544
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.43 E-value=4.7e-07 Score=72.87 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=95.4
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-CC--CCeEEEEEeCCCC---CCC---ccccCCCCc
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-QT--VNVKVIMATNRAD---TLD---PALLRPGRL 82 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~--~~v~vi~ttn~~~---~ld---~al~r~grf 82 (173)
..|.+|+|||+|.+...+. ... ..+..++..+.... .. .++.+|++|+.++ .++ +.+.+ +|
T Consensus 137 ~~~~llvlDe~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~ 206 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QI 206 (412)
T ss_dssp TCEEEEEEESTHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TC
T ss_pred CCeEEEEEeCHHHHhhccC-----cch---HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hc
Confidence 4589999999999864310 111 33444444444332 13 6888999988765 344 55666 66
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCC---CCcCCHHHHhcCCC------CCCHHHHHHHHHHHHHHHHHhcCCccCHHH
Q 030674 83 DRKIEFPLPDRRQKRLVFQVCTAKMNL---SDEVDLEDYVSRPD------KISAAEIAAICQEAGMHAVRKNRYVILPKD 153 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~~~l~~~~~---~~~~~~~~la~~t~------g~s~~di~~l~~~a~~~a~~~~~~~i~~~d 153 (173)
...+.+++++.++..++++..+..... -+.-.+..++..|. | .|+.+..++..|...+...+...++.++
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 666999999999999999876642111 12223566777777 6 5778888998888888777777899999
Q ss_pred HHHHHHhhC
Q 030674 154 FEKGYRTNV 162 (173)
Q Consensus 154 ~~~al~~~~ 162 (173)
+..++....
T Consensus 286 v~~~~~~~~ 294 (412)
T 1w5s_A 286 VRKAVSENE 294 (412)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 998887654
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.36 E-value=9.7e-07 Score=69.74 Aligned_cols=89 Identities=9% Similarity=0.149 Sum_probs=67.4
Q ss_pred HHHHHHHH--HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC----CCcc
Q 030674 2 VRDVFRLA--KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT----LDPA 75 (173)
Q Consensus 2 l~~if~~A--~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~----ld~a 75 (173)
|+.+|... ....|+||+|||+|.+. . +.++..++++.. ...+++++|+++|..+. |+++
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~ 183 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLL-S------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIM 183 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhh-c------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchh
Confidence 56677764 34568999999999997 1 145566666543 34568999999999864 4556
Q ss_pred ccCCCCcc-ceecCCCCCHHHHHHHHHHHHccC
Q 030674 76 LLRPGRLD-RKIEFPLPDRRQKRLVFQVCTAKM 107 (173)
Q Consensus 76 l~r~grf~-~~i~~~~p~~~~R~~il~~~l~~~ 107 (173)
+.+ ||+ .+|.|++++.++-..|++..+...
T Consensus 184 v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 184 PSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 677 887 689999999999999999887653
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.36 E-value=6.7e-07 Score=78.04 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=84.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC----C-----CCCeEEEEEeCCCC------
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD----Q-----TVNVKVIMATNRAD------ 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~-----~~~v~vi~ttn~~~------ 70 (173)
....+...++||+|||+|.+-+ .+.+.|+..++.-. . -.++++|+|||...
T Consensus 550 ~~~~~~~~~~vl~lDEi~~~~~--------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~ 615 (758)
T 1r6b_X 550 TDAVIKHPHAVLLLDEIEKAHP--------------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK 615 (758)
T ss_dssp HHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----
T ss_pred HHHHHhCCCcEEEEeCccccCH--------------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhc
Confidence 4445555679999999996531 35666666665311 0 14688999999754
Q ss_pred -------------------CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------C--CC-CcCCHHHHhcC
Q 030674 71 -------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------N--LS-DEVDLEDYVSR 121 (173)
Q Consensus 71 -------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~--~~-~~~~~~~la~~ 121 (173)
.++++++. ||+..|.|++|+.+++..|++.++... . +. ++-.+..++..
T Consensus 616 ~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~ 693 (758)
T 1r6b_X 616 SIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEK 693 (758)
T ss_dssp ------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHh
Confidence 67888888 999999999999999999999988632 1 11 11124445543
Q ss_pred --CCCCCHHHHHHHHHHHHHHHH
Q 030674 122 --PDKISAAEIAAICQEAGMHAV 142 (173)
Q Consensus 122 --t~g~s~~di~~l~~~a~~~a~ 142 (173)
..++..++|.++++++...+.
T Consensus 694 ~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 694 GYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HCBTTTBTTTHHHHHHHHHTHHH
T ss_pred CCCcCCCchHHHHHHHHHHHHHH
Confidence 356778999999998876544
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.1e-06 Score=69.66 Aligned_cols=107 Identities=10% Similarity=0.201 Sum_probs=77.4
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.|.||+|||++.+-. ...+.++..++.. ..+..+|.+||.++.+++.+++ |+ ..+.|++|+
T Consensus 134 ~~~vlilDE~~~L~~--------------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~ 194 (354)
T 1sxj_E 134 RYKCVIINEANSLTK--------------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPS 194 (354)
T ss_dssp CCEEEEEECTTSSCH--------------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCC
T ss_pred CCeEEEEeCccccCH--------------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcC
Confidence 577999999998431 2234455555533 3357888899999999999998 88 789999999
Q ss_pred HHHHHHHHHHHHccCCCC-C-cCCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 93 RRQKRLVFQVCTAKMNLS-D-EVDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~-~-~~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
.++...+++..+...... + +-.+..++..+.| +.+++.++++.+..
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 195 DSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999999887654433 2 3346677776655 66667677666554
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=3.5e-06 Score=70.59 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=76.5
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..|+||+|||+|.+.... . ..+..++..++. ...++++++++.....+++ +. |+...+.|++|
T Consensus 147 ~~~~vliIDEid~l~~~~----~-------~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~ 209 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGD----R-------GGVGQLAQFCRK--TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRP 209 (516)
T ss_dssp TTSEEEEECSGGGCCTTS----T-------THHHHHHHHHHH--CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCC
T ss_pred CCCeEEEEECCCccchhh----H-------HHHHHHHHHHHh--cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCC
Confidence 468999999999987532 0 113334444432 2234444444443444543 43 55668999999
Q ss_pred CHHHHHHHHHHHHccCC--CCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 92 DRRQKRLVFQVCTAKMN--LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~--~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+.+++.+++...+.... ++++ .+..++..+.| |+..+++.....+. ....++.+++..++...
T Consensus 210 ~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----diR~~i~~L~~~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 210 DANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----DIRQVINLLSTIST--TTKTINHENINEISKAW 274 (516)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHHHHHHHHh--cCCCCchHHHHHHHHhh
Confidence 99999999988765433 3333 47778887654 45444444333232 34468888887777643
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.31 E-value=5.3e-07 Score=72.40 Aligned_cols=146 Identities=19% Similarity=0.167 Sum_probs=86.2
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-------------------CCCCeEEEEEeCCCC--
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-------------------QTVNVKVIMATNRAD-- 70 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~v~vi~ttn~~~-- 70 (173)
..++||+|||+|.+...+.......+.....+.+.|+..+++-. ..+++++|++|| .+
T Consensus 136 ~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l 214 (376)
T 1um8_A 136 AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGL 214 (376)
T ss_dssp HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTH
T ss_pred cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHH
Confidence 35899999999999876533222222211235667777776421 124567888877 22
Q ss_pred ----------------------------------------CCCccccCCCCccceecCCCCCHHHHHHHHHH----HHc-
Q 030674 71 ----------------------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV----CTA- 105 (173)
Q Consensus 71 ----------------------------------------~ld~al~r~grf~~~i~~~~p~~~~R~~il~~----~l~- 105 (173)
.+.+.+.. ||+..+.|++++.++...++.. ++.
T Consensus 215 ~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~ 292 (376)
T 1um8_A 215 AEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQ 292 (376)
T ss_dssp HHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHH
T ss_pred HHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHH
Confidence 24566666 8888999999999999998862 221
Q ss_pred ------cCCCC---CcCCHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHhcC------CccCHHHHHHHHHh
Q 030674 106 ------KMNLS---DEVDLEDYVSRP--DKISAAEIAAICQEAGMHAVRKNR------YVILPKDFEKGYRT 160 (173)
Q Consensus 106 ------~~~~~---~~~~~~~la~~t--~g~s~~di~~l~~~a~~~a~~~~~------~~i~~~d~~~al~~ 160 (173)
..... ++-.+..++..+ .+...++|.+++.++...+..+.. ..|+.+++..+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 293 YQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 11111 111244555553 246789999999998877665432 25888888765543
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.20 E-value=4.7e-06 Score=65.97 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHHHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
++.+.+.+... .+.|++|||+|.+.. ...+.|+..++ .+..++++|.+||+++.+++.++
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~~--------------~a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLTD--------------AAANALLKTLE--EPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------------HHHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcCH--------------HHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHh
Confidence 45666665432 368999999998752 23567888887 35567888999999999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAIC 134 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~ 134 (173)
+ |+. .+.|++|+.++...+++... ..++ -.+..++..+.| +++...+++
T Consensus 157 S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~~-~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 157 S--RCR-LHYLAPPPEQYAVTWLSREV---TMSQ-DALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp T--TSE-EEECCCCCHHHHHHHHHHHC---CCCH-HHHHHHHHHTTT-CHHHHHHTT
T ss_pred h--cce-eeeCCCCCHHHHHHHHHHhc---CCCH-HHHHHHHHHcCC-CHHHHHHHh
Confidence 9 874 69999999999999888764 2222 234556665554 444444433
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=1e-06 Score=62.88 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=53.0
Q ss_pred HHHHHHHHHHc-CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC-----CCCcc
Q 030674 2 VRDVFRLAKEN-APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD-----TLDPA 75 (173)
Q Consensus 2 l~~if~~A~~~-~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~-----~ld~a 75 (173)
++.++..+... .|.+|+|||+|.+.+.+...... . .+.+.+...++ ..++.+|++||.++ .++++
T Consensus 103 ~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~---~~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~ 173 (187)
T 2p65_A 103 LKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--L---DAGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKA 173 (187)
T ss_dssp HHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--C---CTHHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--h---HHHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHH
Confidence 35566666555 68999999999998654311111 1 12222223332 34678999999875 68999
Q ss_pred ccCCCCccceecCCCCC
Q 030674 76 LLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 76 l~r~grf~~~i~~~~p~ 92 (173)
+.+ ||+. ++++.|+
T Consensus 174 l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 174 LER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHH--HEEE-EECCSCC
T ss_pred HHH--hcCc-ccCCCCC
Confidence 999 9995 9999986
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.08 E-value=4.9e-06 Score=73.67 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=84.7
Q ss_pred HHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCCC--------
Q 030674 7 RLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRA-------- 69 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~-------- 69 (173)
...+...+++|||||+|.+- ..+.+.|+..++.-. .-.++++|+|||..
T Consensus 654 ~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~ 719 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEIEKAH--------------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGL 719 (854)
T ss_dssp HHHHHCSSEEEEESSGGGSC--------------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHH
T ss_pred HHHHhCCCeEEEEecccccC--------------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhc
Confidence 34445556999999999653 146667777776321 11368899999962
Q ss_pred ------------------CCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccC-------CCC---CcCCHHHHhcC
Q 030674 70 ------------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM-------NLS---DEVDLEDYVSR 121 (173)
Q Consensus 70 ------------------~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~-------~~~---~~~~~~~la~~ 121 (173)
..+.++|.. ||+..+.+++|+.++...|++.++... ... ++-.+..++..
T Consensus 720 ~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~ 797 (854)
T 1qvr_A 720 QKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER 797 (854)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHc
Confidence 245667776 999999999999999999999888632 111 11224556665
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHh
Q 030674 122 PD--KISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 122 t~--g~s~~di~~l~~~a~~~a~~~ 144 (173)
+- .+..++|.++++++...+...
T Consensus 798 ~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 798 GYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHH
Confidence 44 678899999999987666544
No 83
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=4.9e-06 Score=65.82 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=77.2
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCCH
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 93 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~~ 93 (173)
+.|++|||+|.+.. ...+.|+..++. ......+|++||.+..+.+.+++ |+. .+.+++++.
T Consensus 111 ~~viiiDe~~~l~~--------------~~~~~L~~~le~--~~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~ 171 (340)
T 1sxj_C 111 FKLIILDEADAMTN--------------AAQNALRRVIER--YTKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQ 171 (340)
T ss_dssp CEEEEETTGGGSCH--------------HHHHHHHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCH
T ss_pred ceEEEEeCCCCCCH--------------HHHHHHHHHHhc--CCCCeEEEEEecCccccchhHHh--hce-eEeccCCCH
Confidence 68999999998752 123445555553 23456677888999999999999 886 789999999
Q ss_pred HHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 94 RQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 94 ~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
++....+...+...... ++..+..++..+.| ..+.+.++++.+...+...+...++.+++..++.
T Consensus 172 ~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHHhC
Confidence 99999998887543332 22234455554433 3333333333322111111122577777665544
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.98 E-value=1.5e-05 Score=67.93 Aligned_cols=100 Identities=19% Similarity=0.310 Sum_probs=69.5
Q ss_pred CeEEEEEeCCC--CCCCccccCCCCcc---ceecCCC--C-CHHHHHHHHHHHHccCC-----CC-CcCCHHHHhcC---
Q 030674 59 NVKVIMATNRA--DTLDPALLRPGRLD---RKIEFPL--P-DRRQKRLVFQVCTAKMN-----LS-DEVDLEDYVSR--- 121 (173)
Q Consensus 59 ~v~vi~ttn~~--~~ld~al~r~grf~---~~i~~~~--p-~~~~R~~il~~~l~~~~-----~~-~~~~~~~la~~--- 121 (173)
++.+|++||.. +.++++|++ ||+ ..+.|+. + +.+....+++.+..... .. .+-.+..+...
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r 329 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQK 329 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhh
Confidence 57899999976 689999999 997 4666653 2 25556666654443211 11 11123334332
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 122 PDK------ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 122 t~g------~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
..| .+++++.++++.|...|...++..|+.+|+.+|+..
T Consensus 330 ~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 330 RAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp TTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 255 379999999999998998888889999999999965
No 85
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.93 E-value=7.4e-05 Score=61.49 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=91.3
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--------CCCCeEEEEEe----CCCCCCCccccCCCCc
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--------QTVNVKVIMAT----NRADTLDPALLRPGRL 82 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~v~vi~tt----n~~~~ld~al~r~grf 82 (173)
.|+++||+|.+.....+ .+.+.....+...||..+++-. ..++|++|+|. +.|.++-|.|.. ||
T Consensus 252 ~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~ 327 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RL 327 (444)
T ss_dssp CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TC
T ss_pred CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--cc
Confidence 69999999999865421 2333333456678888888631 34579999987 345556678887 99
Q ss_pred cceecCCCCCHHHHHHHHH---H-----HHc---cCCCC---CcCCHHHHhc-------CCCCCCHHHHHHHHHHHHHHH
Q 030674 83 DRKIEFPLPDRRQKRLVFQ---V-----CTA---KMNLS---DEVDLEDYVS-------RPDKISAAEIAAICQEAGMHA 141 (173)
Q Consensus 83 ~~~i~~~~p~~~~R~~il~---~-----~l~---~~~~~---~~~~~~~la~-------~t~g~s~~di~~l~~~a~~~a 141 (173)
..+|+|+..+.++..+|+. . |.. ..... .+--+..+++ .|.+.-.+-|.+++...+...
T Consensus 328 ~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~ 407 (444)
T 1g41_A 328 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 407 (444)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHH
Confidence 9999999999999999983 1 111 11111 1112444444 456677777777666655443
Q ss_pred HHhc------CCccCHHHHHHHHHh
Q 030674 142 VRKN------RYVILPKDFEKGYRT 160 (173)
Q Consensus 142 ~~~~------~~~i~~~d~~~al~~ 160 (173)
...- ...|+.+.+...+..
T Consensus 408 ~~~~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 408 SFSASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp HHHGGGCTTCEEEECHHHHHHHHTT
T ss_pred HhhccccCCCeEEEeHHHHHHhcCc
Confidence 3331 235888888776654
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=6.1e-05 Score=59.03 Aligned_cols=82 Identities=10% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcC----CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCcccc
Q 030674 2 VRDVFRLAKENA----PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~~----P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~ 77 (173)
+|.+.+.|.... .-|++|||+|.+.. ...+.|+..|+ .+..++++|.+|++++.+.+.++
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~lt~--------------~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERMTQ--------------QAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGBCH--------------HHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHhCH--------------HHHHHHHHHHh--CCCCCeEEEEEECChHhChHHHH
Confidence 567777775331 36999999998852 23567888888 45567888888899999999999
Q ss_pred CCCCccceecCCCCCHHHHHHHHHHHH
Q 030674 78 RPGRLDRKIEFPLPDRRQKRLVFQVCT 104 (173)
Q Consensus 78 r~grf~~~i~~~~p~~~~R~~il~~~l 104 (173)
+ | .+.|++|+.++....++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9 8 89999999999999888776
No 87
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.54 E-value=0.00014 Score=56.76 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=70.7
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---------CCCCeEEEEEeCCC-------CCCCcccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---------QTVNVKVIMATNRA-------DTLDPALL 77 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~vi~ttn~~-------~~ld~al~ 77 (173)
+++|||||+|.+.. .....|+..++.-. ....+.+|++||.+ ..+++.|.
T Consensus 97 ~g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 97 GGTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp TSEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred CCEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 57999999998753 12233444444321 12358899999975 23444555
Q ss_pred CCCCcc-ceecCCCCC--HHHHHHHHHHHHccC----CCC-CcC---CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 030674 78 RPGRLD-RKIEFPLPD--RRQKRLVFQVCTAKM----NLS-DEV---DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 146 (173)
Q Consensus 78 r~grf~-~~i~~~~p~--~~~R~~il~~~l~~~----~~~-~~~---~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~ 146 (173)
. ||. ..|++|++. .++...++++++... ... ..+ .+..+....-.-..++|.+++.++...+ ..
T Consensus 163 ~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~---~~ 237 (304)
T 1ojl_A 163 Y--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL---TG 237 (304)
T ss_dssp H--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC---CS
T ss_pred h--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC---CC
Confidence 5 553 335566655 455566777766532 111 112 2455666552236678888888877544 23
Q ss_pred CccCHHHHHHH
Q 030674 147 YVILPKDFEKG 157 (173)
Q Consensus 147 ~~i~~~d~~~a 157 (173)
..++.+|+...
T Consensus 238 ~~i~~~~l~~~ 248 (304)
T 1ojl_A 238 EYISERELPLA 248 (304)
T ss_dssp SSBCGGGSCGG
T ss_pred CcccHHhhhhh
Confidence 45666666433
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.38 E-value=0.0002 Score=69.91 Aligned_cols=84 Identities=14% Similarity=0.334 Sum_probs=60.2
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC---C-----CCCeEEEEEeCCCC-----CCCccccCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD---Q-----TVNVKVIMATNRAD-----TLDPALLRPG 80 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~-----~~~v~vi~ttn~~~-----~ld~al~r~g 80 (173)
++||||||++.....+. ........+.++++. +++. . -.++.+|||+|.|. .|++++.|
T Consensus 1337 ~~VlFiDEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp CEEEEEETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred eEEEEeccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 47999999996443331 112233555555532 1211 1 13589999999994 89999999
Q ss_pred CccceecCCCCCHHHHHHHHHHHHcc
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
|| .+++++.|+.+++..|+..++..
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99 88999999999999999988754
No 89
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.30 E-value=0.0034 Score=52.09 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=83.9
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-------CCCCCCeEEEEEeCCCC-----------CCCcc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-------FDQTVNVKVIMATNRAD-----------TLDPA 75 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~~~v~vi~ttn~~~-----------~ld~a 75 (173)
-.++|+||++.+-. ...+.|+..|+. ..-..++.||||+|-.. .|+++
T Consensus 301 gGvl~lDEIn~~~~--------------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~a 366 (506)
T 3f8t_A 301 GGILAVDHLEGAPE--------------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQD 366 (506)
T ss_dssp TSEEEEECCTTCCH--------------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHH
T ss_pred CCeeehHhhhhCCH--------------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChH
Confidence 36899999997532 344555555542 11134688999999765 88999
Q ss_pred ccCCCCccc-eecCCCCCHHHH---------HHHHHHH---HccCCCCCcCC------HHH----H----------hcCC
Q 030674 76 LLRPGRLDR-KIEFPLPDRRQK---------RLVFQVC---TAKMNLSDEVD------LED----Y----------VSRP 122 (173)
Q Consensus 76 l~r~grf~~-~i~~~~p~~~~R---------~~il~~~---l~~~~~~~~~~------~~~----l----------a~~t 122 (173)
++. |||. .+.++.|+.+.- .+.++.| .+.....+.+. +.+ . ....
T Consensus 367 lLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~ 444 (506)
T 3f8t_A 367 FLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPT 444 (506)
T ss_dssp HHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred Hhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccccc
Confidence 999 9986 445667764431 1222222 22011111110 000 0 0145
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCC
Q 030674 123 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVK 163 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p 163 (173)
-|.|++.+..+++-|...|..+++..++.+|+..|++-+..
T Consensus 445 ~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 445 LPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999976653
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.22 E-value=0.00065 Score=51.45 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=71.2
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCC---------CCCCCeEEEEEeCCC-------CCCCccc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGF---------DQTVNVKVIMATNRA-------DTLDPAL 76 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~v~vi~ttn~~-------~~ld~al 76 (173)
.+.+|+|||+|.+.. .....|+..++.- ....++.+|+|||.+ ..+++.+
T Consensus 100 ~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 368999999998753 1222333333311 112357889999874 2467888
Q ss_pred cCCCCcc-ceecCCCCCH--HHHHHHHHHHHcc----CCCCC--cCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHh
Q 030674 77 LRPGRLD-RKIEFPLPDR--RQKRLVFQVCTAK----MNLSD--EVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRK 144 (173)
Q Consensus 77 ~r~grf~-~~i~~~~p~~--~~R~~il~~~l~~----~~~~~--~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~ 144 (173)
.. ||. ..+.+|+... ++...++++++.. ..... .++ +..+....-.-..++|.++++.+...+
T Consensus 166 ~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~--- 240 (265)
T 2bjv_A 166 LD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH--- 240 (265)
T ss_dssp HH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH---
T ss_pred HH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---
Confidence 88 885 4567776653 5666666666543 22211 122 344544443346778888888877544
Q ss_pred cCCccCHHHH
Q 030674 145 NRYVILPKDF 154 (173)
Q Consensus 145 ~~~~i~~~d~ 154 (173)
....++.+|+
T Consensus 241 ~~~~i~~~~l 250 (265)
T 2bjv_A 241 GTSDYPLDDI 250 (265)
T ss_dssp CCSSSCBCCC
T ss_pred CCCcCcHHHc
Confidence 2335666655
No 91
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.19 E-value=0.00022 Score=67.01 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccccc---CCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARF---DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~---~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
|+.+|..|+..+||+|++|++|+|++.+. ...+....-..|++++++..++++....+|+|| +||+.
T Consensus 1149 l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1149 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred HHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 57889999999999999999999999843 222222355678999999999988777788888 56654
No 92
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.15 E-value=0.0038 Score=49.08 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHHHHHHc----CCeEEEEccccc-ccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC------C
Q 030674 2 VRDVFRLAKEN----APAIIFIDEVDA-IATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA------D 70 (173)
Q Consensus 2 l~~if~~A~~~----~P~il~ide~d~-l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~------~ 70 (173)
++.+.+.+... ..-||+|||+|. +.. ...+.|+..++. +...+++|.+|+.+ .
T Consensus 61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--------------~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~ 124 (343)
T 1jr3_D 61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNA--------------AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENA 124 (343)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCSSCCCT--------------THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTS
T ss_pred HHHHHHHhcCcCCccCCeEEEEECCCCCCCh--------------HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhh
Confidence 45666666542 257999999987 431 234557777774 33344555545543 3
Q ss_pred CCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCcc
Q 030674 71 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVI 149 (173)
Q Consensus 71 ~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i 149 (173)
.+.+++.+ |. .++.+.+|+..+....++..+...++. +.-.+..++..+.| ..+++.+.++.....+ +...|
T Consensus 125 k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~I 197 (343)
T 1jr3_D 125 AWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKL 197 (343)
T ss_dssp HHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEE
T ss_pred HHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCC
Confidence 56677776 54 578999999999998888888766544 22235667776655 6666666666554332 23468
Q ss_pred CHHHHHHHHHhh
Q 030674 150 LPKDFEKGYRTN 161 (173)
Q Consensus 150 ~~~d~~~al~~~ 161 (173)
+.+++...+...
T Consensus 198 t~e~V~~~~~~~ 209 (343)
T 1jr3_D 198 TLPRVEQAVNDA 209 (343)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHhhh
Confidence 888887766544
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.93 E-value=0.00074 Score=49.61 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=52.1
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 91 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p 91 (173)
..++||+|||++.+++.+....+ .. + ++..+.. ....++-+|.+|+.++.|+.+++. |++..++++.|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~~---r----ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--IP---E----NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--CC---H----HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccch--hH---H----HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 34899999999999876522111 11 2 4445543 334467788899999999999998 99999999887
Q ss_pred CHHHH
Q 030674 92 DRRQK 96 (173)
Q Consensus 92 ~~~~R 96 (173)
....|
T Consensus 154 ~~~~~ 158 (199)
T 2r2a_A 154 KMGMR 158 (199)
T ss_dssp SSCCE
T ss_pred ccCcc
Confidence 65444
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.84 E-value=0.011 Score=45.78 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=63.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC---------CccccCCCCcc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL---------DPALLRPGRLD 83 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l---------d~al~r~grf~ 83 (173)
.|.+|+|||++.+.... ...+......+..+.... .++.+|.|++....+ ...+. ||+.
T Consensus 128 ~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~ 195 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIA 195 (350)
T ss_dssp SCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCC
T ss_pred CCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCcc
Confidence 49999999999886411 011222223333333221 366666666543211 11222 4777
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCC-CcCCHHHHhcCCCCCCHHHHHHHH
Q 030674 84 RKIEFPLPDRRQKRLVFQVCTAKMNLS-DEVDLEDYVSRPDKISAAEIAAIC 134 (173)
Q Consensus 84 ~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~l~ 134 (173)
..+++++.+.++-.++++..+...... +...+..+...|.|+. .-+..++
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 789999999999999998877644332 2234566777787764 3344443
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.59 E-value=0.0066 Score=47.20 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=68.4
Q ss_pred HHHHHHHHHc--CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC-------
Q 030674 3 RDVFRLAKEN--APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD------- 73 (173)
Q Consensus 3 ~~if~~A~~~--~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld------- 73 (173)
..+++..... .|.+|+|||++.+.... ... ....+..+.... .++.+|+|++....+.
T Consensus 125 ~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~~~---~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~ 191 (357)
T 2fna_A 125 ANLLESFEQASKDNVIIVLDEAQELVKLR----GVN---LLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVED 191 (357)
T ss_dssp HHHHHHHHHTCSSCEEEEEETGGGGGGCT----TCC---CHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTC
T ss_pred HHHHHHHHhcCCCCeEEEEECHHHhhccC----chh---HHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccC
Confidence 4455555443 39999999999886421 111 112333333221 3566777776532111
Q ss_pred --ccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHH
Q 030674 74 --PALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQ 135 (173)
Q Consensus 74 --~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~ 135 (173)
..+ .||+...+.+++.+.++-.++++..+.......+ +...+...|.|+.. -+..++.
T Consensus 192 ~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 192 PESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp TTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred CCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 112 2477788999999999999999987754333322 23778888888643 3444443
No 96
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.68 E-value=0.019 Score=39.39 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
..|..| .+++|||||+|.+-. .....++..+.. ...++.+|+|||.+
T Consensus 70 ~~~~~a---~~g~l~ldei~~l~~--------------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 70 DFIALA---QGGTLVLSHPEHLTR--------------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHH---TTSCEEEECGGGSCH--------------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred cHHHHc---CCcEEEEcChHHCCH--------------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 445555 458999999998753 122334444432 23356688888863
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.64 E-value=0.013 Score=46.15 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccc
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPAL 76 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al 76 (173)
+.+++...... +|+||+++.+....... +......+.+..++..|.++....++.+|+++| +...|+++
T Consensus 174 ~~i~~~l~~~~--LLVIDsI~aL~~~~~~~--s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 174 DDIARAMLQHR--VIVIDSLKNVIGAAGGN--TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHCS--EEEEECCTTTC-------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHhhCC--EEEEecccccccccccc--cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44556665554 99999999997544221 111111234455555555443445777888888 67777765
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.66 E-value=0.034 Score=37.98 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
+.+|+.| .+.+|||||+|.+... ....++..++.- ...++.+|+|||.+
T Consensus 68 ~~~~~~a---~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 68 MELLQKA---EGGVLYVGDIAQYSRN--------------IQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHT---TTSEEEEEECTTCCHH--------------HHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhHHHhC---CCCeEEEeChHHCCHH--------------HHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 3455555 3689999999987531 122233333321 13457788888854
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.19 E-value=0.13 Score=41.20 Aligned_cols=126 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----CCC----CCCeEEEEEeCCCCCCCccccCCCCcc-
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----FDQ----TVNVKVIMATNRADTLDPALLRPGRLD- 83 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----~~~----~~~v~vi~ttn~~~~ld~al~r~grf~- 83 (173)
..+|||||++.+-. .....++..++. +.+ ...+-+|++||.. +. .+...|+|.
T Consensus 232 ~gtlfldei~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~~~~g~fr~ 294 (387)
T 1ny5_A 232 GGTLFLDEIGELSL--------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IK-ELVKEGKFRE 294 (387)
T ss_dssp TSEEEEESGGGCCH--------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HH-HHHHTTSSCH
T ss_pred CcEEEEcChhhCCH--------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HH-HHHHcCCccH
Confidence 47999999998742 122233333321 111 1257789999852 22 223345553
Q ss_pred --------ceecCCCCC--HHHHHHHHHHHHccC----CCC-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHHHHHhc
Q 030674 84 --------RKIEFPLPD--RRQKRLVFQVCTAKM----NLS-DEVD---LEDYVSRPDKISAAEIAAICQEAGMHAVRKN 145 (173)
Q Consensus 84 --------~~i~~~~p~--~~~R~~il~~~l~~~----~~~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~a~~~~ 145 (173)
..|++|+.. .++...+.++++... ... ..++ +..+....=--..++|++++.+|+..+ .
T Consensus 295 dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~ 371 (387)
T 1ny5_A 295 DLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---E 371 (387)
T ss_dssp HHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---C
T ss_pred HHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---C
Confidence 335555554 356666777776532 211 1122 333443321124568888888887654 2
Q ss_pred CCccCHHHHHHHHH
Q 030674 146 RYVILPKDFEKGYR 159 (173)
Q Consensus 146 ~~~i~~~d~~~al~ 159 (173)
...|+.+|+...++
T Consensus 372 ~~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 372 GKFIDRGELSCLVN 385 (387)
T ss_dssp SSEECHHHHHHHC-
T ss_pred CCcCcHHHCcHhhh
Confidence 34788888865543
No 100
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.10 E-value=0.088 Score=50.63 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccc---cCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATAR---FDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (173)
++.++..++..+|++|+||+++.+.+.+ +...++......+++++++..|.++....++++|.|-..
T Consensus 1494 l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1494 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred HHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 5677888888999999999999999753 222222222235788888888887766667777666443
No 101
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.03 E-value=0.66 Score=36.88 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=52.8
Q ss_pred HHHHHHHH--cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCc-------
Q 030674 4 DVFRLAKE--NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDP------- 74 (173)
Q Consensus 4 ~if~~A~~--~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~------- 74 (173)
.+|..+.. ..|.++++||+..++... .......+..++.... +.++.++.+|.++.++..
T Consensus 251 ~i~~~~~~~~~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~~R----k~g~~~~~~tQ~~~d~~~~~~~~~~ 319 (392)
T 4ag6_A 251 FAWNILERDRRERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKRIR----KYNGSLIVISQNVIDFLAPEVQRYG 319 (392)
T ss_dssp HHHHHHHHSCCTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHHGG----GGTCEEEEEESCGGGGGSTTTHHHH
T ss_pred HHHHHHHhCCCccEEEEEecHHHHhCcC-------chHHHHHHHHHHHHhh----hhCeEEEEEcCCHHHhhChhhHHHH
Confidence 34555543 358999999999998521 1223355555665553 446778999999998875
Q ss_pred -cccCCCCccceecCCCCCHHHHHHH
Q 030674 75 -ALLRPGRLDRKIEFPLPDRRQKRLV 99 (173)
Q Consensus 75 -al~r~grf~~~i~~~~p~~~~R~~i 99 (173)
+++. ..+..|.++.+. .++..+
T Consensus 320 ~~il~--n~~~~i~l~~~~-~~~~~~ 342 (392)
T 4ag6_A 320 QALLD--NPTYKLLLAQGE-KDLEAI 342 (392)
T ss_dssp HHHHH--SCSEEEECSCCH-HHHHHH
T ss_pred HHHHH--hhhhhheeCCCh-hhHHHH
Confidence 4445 567778877664 344443
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.96 E-value=0.12 Score=41.22 Aligned_cols=110 Identities=22% Similarity=0.339 Sum_probs=58.3
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhcc-----CCCCC----CCeEEEEEeCCCCCCCccccCCCCccc
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMD-----GFDQT----VNVKVIMATNRADTLDPALLRPGRLDR 84 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~----~~v~vi~ttn~~~~ld~al~r~grf~~ 84 (173)
...|||||++.+-. .....|+..++ .+.++ ..+-+|++||. .+. .....|+|..
T Consensus 223 ~gtlfldei~~l~~--------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~-~~v~~g~fr~ 285 (368)
T 3dzd_A 223 QGTLFLDEVGELDQ--------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLE-EEIKKGNFRE 285 (368)
T ss_dssp TSEEEEETGGGSCH--------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHH-HHHHTTSSCH
T ss_pred CCeEEecChhhCCH--------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHH-HHHHcCCccH
Confidence 36899999998742 22223333332 11111 14668888883 232 2334456644
Q ss_pred ---------eecCCCCCH--HHHHHHHHHHHccCC----CC-CcCC---HHHHhcCCCCCCHHHHHHHHHHHHHH
Q 030674 85 ---------KIEFPLPDR--RQKRLVFQVCTAKMN----LS-DEVD---LEDYVSRPDKISAAEIAAICQEAGMH 140 (173)
Q Consensus 85 ---------~i~~~~p~~--~~R~~il~~~l~~~~----~~-~~~~---~~~la~~t~g~s~~di~~l~~~a~~~ 140 (173)
.|++|+... ++...+.++++.+.. .. ..++ +..+....=-=..++|.+++.+|+..
T Consensus 286 dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 286 DLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 567777765 677777777775431 11 1122 33344433111346677777766543
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.88 E-value=0.052 Score=43.61 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.9
Q ss_pred cCCeEEEEcccccccc-cccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCC
Q 030674 12 NAPAIIFIDEVDAIAT-ARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 90 (173)
Q Consensus 12 ~~P~il~ide~d~l~~-~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~ 90 (173)
.+..++++||++.+.. .+.... + .. .. ....+.+.+++ .+.|+++||+++.+ +++.+|||++..++..+
T Consensus 215 ~q~~~~l~dd~~~~~~~~r~l~~-~-~~-~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 215 IDQFLVVFEDVKGTGGESRDLPS-G-QG-IN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCSCEEETTCCCSTTTTTTCCC-C-SH-HH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cchhHHHHHHHHHHHHHHhhccc-c-Cc-ch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4557789999999875 231111 1 11 10 22344445553 35578899999999 79999999999888766
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.75 E-value=8.3 Score=38.56 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccC-----------CCCCCCeEEEEEeC----
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDG-----------FDQTVNVKVIMATN---- 67 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-----------~~~~~~v~vi~ttn---- 67 (173)
..+|.-|... .+.+++||++.+-.. --......+..+...+.. +.-..+..+++|.|
T Consensus 688 g~~~~g~~~~-Gaw~~~DE~nr~~~e-------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~ 759 (2695)
T 4akg_A 688 SRLLVGITQI-GAWGCFDEFNRLDEK-------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN 759 (2695)
T ss_dssp HHHHHHHHHH-TCEEEEETTTSSCHH-------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS
T ss_pred hHHHHHHHhc-CCEeeehhhhhcChH-------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc
Confidence 4566666444 699999999975421 001111122222332211 11234577888888
Q ss_pred CCCCCCccccCCCCccceecCCCCCHHHHHHHHHHHHccCCCCCc-----CC-HHHHhcCC-----CCCCHHHHHHHHHH
Q 030674 68 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDE-----VD-LEDYVSRP-----DKISAAEIAAICQE 136 (173)
Q Consensus 68 ~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~-----~~-~~~la~~t-----~g~s~~di~~l~~~ 136 (173)
....||+++++ || +.+.+..|+.+...+++-.... ...... +. +..+.+.. -.|..+.|..++..
T Consensus 760 g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ 835 (2695)
T 4akg_A 760 GRSELPENLKK--SF-REFSMKSPQSGTIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRN 835 (2695)
T ss_dssp SSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHH
T ss_pred CcccccHHHHh--he-EEEEeeCCCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHH
Confidence 56689999999 98 6799999999988888643322 111110 00 11111111 23788999998887
Q ss_pred HHHH
Q 030674 137 AGMH 140 (173)
Q Consensus 137 a~~~ 140 (173)
|...
T Consensus 836 ag~l 839 (2695)
T 4akg_A 836 CSPL 839 (2695)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.63 E-value=1.3 Score=44.59 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=56.0
Q ss_pred CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC-------CCCCeEEEEEeCCC-----CCCCccccCCCC
Q 030674 14 PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD-------QTVNVKVIMATNRA-----DTLDPALLRPGR 81 (173)
Q Consensus 14 P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~v~vi~ttn~~-----~~ld~al~r~gr 81 (173)
..|+||||++---... . .......++.+++..-.-+. .-.++.+|||.|.| ..|++++.| |
T Consensus 1375 ~~VlFiDDiNmp~~D~----y-GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDK----Y-GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--H 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCT----T-SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred eEEEEecccCCCCccc----c-ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--h
Confidence 3699999998532211 1 11222344555554311111 12358899999987 469999999 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHcc
Q 030674 82 LDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 82 f~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
|.. ++++.|+.++-..|+..++..
T Consensus 1448 F~v-i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHHHHHHH
Confidence 865 899999999999998876643
No 106
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=87.50 E-value=0.91 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
--+..++++|...+...+++.++.+|+..|++
T Consensus 38 yr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 38 IKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 34667888888888888899999999999985
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.22 E-value=0.21 Score=34.34 Aligned_cols=58 Identities=14% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC-CCCCCC--ccccCCCCcccee
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN-RADTLD--PALLRPGRLDRKI 86 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn-~~~~ld--~al~r~grf~~~i 86 (173)
.|.+|+|||++.+.... ...+-.+++.+. .+.+..+|.||| .|..+. +.+.+ |+..-.
T Consensus 83 ~~~lLilDE~~~~~~~~-----------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-----------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp GCSEEEEESTTCCCSHH-----------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred CCCEEEEeCccccChHH-----------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 57899999998753211 233334444432 222332444555 566554 56666 665433
No 108
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.66 E-value=0.71 Score=39.06 Aligned_cols=74 Identities=14% Similarity=0.399 Sum_probs=52.8
Q ss_pred eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC--CCCccccCCCCccceecCCCCC
Q 030674 15 AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 15 ~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+|+|||+..++... .......+..+... -..-+|-+|++|.+|. .|+..++. -|...|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 689999999987532 11222333333222 2455899999999998 89988887 788889999999
Q ss_pred HHHHHHHHH
Q 030674 93 RRQKRLVFQ 101 (173)
Q Consensus 93 ~~~R~~il~ 101 (173)
..+-..++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777773
No 109
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=85.26 E-value=1.5 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
-.-|..+..+|...|...++.+|+.+|+..|++..+
T Consensus 33 e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 33 EEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMFK 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 345667788888888888899999999999998753
No 110
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=84.21 E-value=1.6 Score=28.16 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 126 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 126 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.-.-++.++.+|...+...+++.|+.+|+..|+++.-
T Consensus 58 le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g 94 (102)
T 1id3_B 58 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 3455778888899888888999999999999999763
No 111
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=83.18 E-value=2.5 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 129 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 129 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
-+..+..+|...|...++++|+.+|+..|++...
T Consensus 38 Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 38 FLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3556777888888888999999999999998754
No 112
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=83.15 E-value=1.4 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
..-.-++.++.+|...+...+++.|+.+|+..|+++.
T Consensus 39 ~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 39 VLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3445677888889989988899999999999999875
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=82.09 E-value=7.4 Score=35.02 Aligned_cols=86 Identities=7% Similarity=0.110 Sum_probs=53.9
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCC-C
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPL-P 91 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~-p 91 (173)
.+.+|+|||++... .+..+ ..+.-||+||....-..... .-...+.++. +
T Consensus 236 ~~~LlvlDd~~~~~-----------------------~~~~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l 286 (1249)
T 3sfz_A 236 PRSLLILDDVWDPW-----------------------VLKAF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGL 286 (1249)
T ss_dssp CSCEEEEESCCCHH-----------------------HHTTT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSC
T ss_pred CCEEEEEecCCCHH-----------------------HHHhh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCC
Confidence 38999999998431 12222 23456888888665432211 2345678875 8
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCCH
Q 030674 92 DRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISA 127 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s~ 127 (173)
+.++-.++|................++++.+.|+..
T Consensus 287 ~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 287 GREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp CHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 899999999877644322222246778898988743
No 114
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=81.31 E-value=2.4 Score=27.31 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 127 AAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 127 ~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
-.-+++++.+|...+....+..|+.+|+..|++..
T Consensus 60 e~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 60 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 34566778888888888888999999999999976
No 115
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=81.24 E-value=2.4 Score=27.31 Aligned_cols=35 Identities=9% Similarity=0.066 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.-+++++.+|...+....+..|+.+|+..|++..-
T Consensus 61 ~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 61 TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 45667778888888888889999999999999864
No 116
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=79.47 E-value=2.4 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
.-+..+...|...|...+++.|+.+|+..|++...|.
T Consensus 114 ~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 114 RATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 4456677788888888899999999999999998885
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=79.39 E-value=5.4 Score=33.12 Aligned_cols=85 Identities=7% Similarity=0.094 Sum_probs=49.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceec-CCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIE-FPLP 91 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~-~~~p 91 (173)
.|.+|+|||++... .+..+ ..+..||+||........ . . |.. ..+. ++.+
T Consensus 236 ~~~LLVLDdv~~~~--------------------~l~~l-----~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L 286 (591)
T 1z6t_A 236 PRSLLILDDVWDSW--------------------VLKAF-----DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSL 286 (591)
T ss_dssp TTCEEEEEEECCHH--------------------HHHTT-----CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSC
T ss_pred CCeEEEEeCCCCHH--------------------HHHHh-----cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCC
Confidence 68999999997411 12222 235667778876542221 1 1 121 1222 2478
Q ss_pred CHHHHHHHHHHHHccCCCCCcCCHHHHhcCCCCCC
Q 030674 92 DRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKIS 126 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~g~s 126 (173)
+.++-.++|............-....++..|.|..
T Consensus 287 ~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 287 GKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp CHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 88999999988775421111234677888888864
No 118
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.93 E-value=5.8 Score=27.79 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC--CCCCCCccccCCCCcc-cee
Q 030674 10 KENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN--RADTLDPALLRPGRLD-RKI 86 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn--~~~~ld~al~r~grf~-~~i 86 (173)
-...|.++++||++.... -+. .....+...++. .+..+|++|+ +...+-..+.. |-+ ..+
T Consensus 96 l~~~p~llilDEigp~~~--------ld~---~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~--r~~~~i~ 158 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMEL--------FSK---KFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRR--LPGAVLI 158 (178)
T ss_dssp HHCTTCEEEECCCSTTGG--------GCH---HHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHT--CTTCEEE
T ss_pred cccCCCEEEEeCCCCccc--------CCH---HHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHh--cCCcEEE
Confidence 456799999999763321 112 223344444543 2333555553 33333344554 432 456
Q ss_pred cCCCCCH
Q 030674 87 EFPLPDR 93 (173)
Q Consensus 87 ~~~~p~~ 93 (173)
++...+.
T Consensus 159 ~~~~~~r 165 (178)
T 1ye8_A 159 ELTPENR 165 (178)
T ss_dssp ECCTTTT
T ss_pred EecCcCH
Confidence 6666553
No 119
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.90 E-value=1.8 Score=36.15 Aligned_cols=77 Identities=14% Similarity=0.395 Sum_probs=52.2
Q ss_pred CCe-EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC--CCCccccCCCCccceecCC
Q 030674 13 APA-IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD--TLDPALLRPGRLDRKIEFP 89 (173)
Q Consensus 13 ~P~-il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~--~ld~al~r~grf~~~i~~~ 89 (173)
-|- +|+|||+..++... ... +..++..|-..-..-++-+|.+|.+|+ .++..++. -|...|.|.
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~----~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKK----VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHH----HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh-------hHH----HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 364 89999998877421 111 222333332222344788999999987 68888877 788888999
Q ss_pred CCCHHHHHHHHHH
Q 030674 90 LPDRRQKRLVFQV 102 (173)
Q Consensus 90 ~p~~~~R~~il~~ 102 (173)
..+..+...++..
T Consensus 363 v~s~~dsr~ilg~ 375 (512)
T 2ius_A 363 VSSKIDSRTILDQ 375 (512)
T ss_dssp CSSHHHHHHHHSS
T ss_pred cCCHHHHHHhcCC
Confidence 9998888887753
No 120
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.51 E-value=2.9 Score=30.16 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+.+.+....|.+|+||++-.+.....+.. +......+....++..+..+....++.||++++.....
T Consensus 111 ~~~~~~~~~~~lliiD~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATALYRTDYSGR-GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSGGGC--------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred HHHHHhcCCceEEEEeCchHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 44555567899999999998874321110 11011111233344443333233456677777654443
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=75.42 E-value=0.62 Score=32.51 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=26.5
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
..|.+|+|||++... .+......+..+++... . .+..+|+|||.+.
T Consensus 99 ~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSER---------LSDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 368999999998542 12233344455554432 1 2455777887653
No 122
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=74.93 E-value=3.9 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHH
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
+.-.-+..++.+|...|...+++.|+.+|+..|++
T Consensus 35 ~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 35 YLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 55667788888899899888999999999999875
No 123
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=74.75 E-value=5.9 Score=24.84 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 128 AEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 128 ~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
.-|..+..+|...|...++++|..+|+..|++..
T Consensus 42 ~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l 75 (93)
T 1n1j_A 42 EFISFITSEASERCHQEKRKTINGEDILFAMSTL 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 3455667777778888888999999999999854
No 124
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=74.44 E-value=5.7 Score=26.44 Aligned_cols=37 Identities=5% Similarity=0.033 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 126 SAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 126 s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.-.-+++++++|...+-..++++|+.+|+.-|+++.-
T Consensus 77 l~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 77 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 3345666777888888888899999999999998764
No 125
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.21 E-value=9.5 Score=28.38 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=33.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||-- .+-+......+..++..+. .. +..||.+|++++.+.
T Consensus 164 iAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 164 IGRALMTNPKMIVMDEPI----------AGVAPGLAHDIFNHVLELK---AK-GITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCSTTG
T ss_pred HHHHHHcCCCEEEEeCCc----------cCCCHHHHHHHHHHHHHHH---HC-CCEEEEEecCHHHHH
Confidence 445556789999999933 3444444455555555552 22 556788888876553
No 126
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=73.60 E-value=7.3 Score=29.34 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ....+..||.+|++++.+
T Consensus 167 lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~---~~~~g~tviivtHd~~~~ 220 (271)
T 2ixe_A 167 LARALIRKPRLLILDNAT----------SALDAGNQLRVQRLLYES---PEWASRTVLLITQQLSLA 220 (271)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHC---TTTTTSEEEEECSCHHHH
T ss_pred HHHHHhcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHH---HhhcCCEEEEEeCCHHHH
Confidence 444556679999999944 334444444444555444 333345677788775543
No 127
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.95 E-value=9.7 Score=28.51 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=33.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..||.+|++++.+.
T Consensus 149 lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPL----------VGLDREGKTDLLRIVEKWK---TL-GKTVILISHDIETVI 202 (266)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCCTTTG
T ss_pred HHHHHHcCCCEEEEcCcc----------ccCCHHHHHHHHHHHHHHH---Hc-CCEEEEEeCCHHHHH
Confidence 444556779999999943 3444444455555555542 22 456888888876554
No 128
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.19 E-value=5.4 Score=38.79 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=45.2
Q ss_pred HHHHHHHHHH----cCCeEEEEcccccccc-cccCC--CCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 2 VRDVFRLAKE----NAPAIIFIDEVDAIAT-ARFDA--QTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 2 l~~if~~A~~----~~P~il~ide~d~l~~-~~~~~--~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..+++.++. ..|++|+||.+..+.. ..... ......-..+.++.++..|..+....++.||++..-....+
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e 873 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG 873 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence 3456666655 6799999999999986 32111 11111222455777777777776666788888765444443
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.16 E-value=4.7 Score=29.13 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=40.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC-----ccccCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD-----PALLRP 79 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld-----~al~r~ 79 (173)
+........|.+|++||.-+...... ........+..++..+. ..++.+|.+|+..+... ..+..
T Consensus 127 ~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii~vtH~~~~~~~~~~~~~i~~- 196 (251)
T 2ehv_A 127 IYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILTTEAPDPQHGKLSRYGIEE- 196 (251)
T ss_dssp HHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEEECCC----CCSSSSSCGG-
T ss_pred HHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEEEEECCCCCCcccccccChhh-
Confidence 33444567899999999887774221 12223344555666553 22567888888776652 22222
Q ss_pred CCc-cceecCC
Q 030674 80 GRL-DRKIEFP 89 (173)
Q Consensus 80 grf-~~~i~~~ 89 (173)
.+ |.++.+.
T Consensus 197 -~~aD~vi~l~ 206 (251)
T 2ehv_A 197 -FIARGVIVLD 206 (251)
T ss_dssp -GGCSEEEEEE
T ss_pred -EeeeEEEEEe
Confidence 35 6666653
No 130
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.99 E-value=6.6 Score=31.38 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=52.0
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC--------ccccCCCCccc
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD--------PALLRPGRLDR 84 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld--------~al~r~grf~~ 84 (173)
.|+++++||+..++... .+..++... .+.++.++..|.++..+. .++.. -++.
T Consensus 279 ~~~~~~lDE~~~l~~~~-------------~l~~~~~~~----R~~g~~~~~~~Qs~~ql~~~yG~~~a~~i~~--n~~~ 339 (437)
T 1e9r_A 279 RRLWLFIDELASLEKLA-------------SLADALTKG----RKAGLRVVAGLQSTSQLDDVYGVKEAQTLRA--SFRS 339 (437)
T ss_dssp CCEEEEESCGGGSCBCS-------------SHHHHHHHC----TTTTEEEEEEESCHHHHHHHHCHHHHHHHHT--TCCE
T ss_pred ccEEEEEEcccccccch-------------hHHHHHHHH----hccCCEEEEEecCHHHHHHHHCHHHHHHHHh--ccCc
Confidence 47999999999987421 133444444 344788999999999887 45666 7888
Q ss_pred eecCCCC--CHHHHHHHHHHHHcc
Q 030674 85 KIEFPLP--DRRQKRLVFQVCTAK 106 (173)
Q Consensus 85 ~i~~~~p--~~~~R~~il~~~l~~ 106 (173)
.|.++.. +.+..+.+ ...+..
T Consensus 340 ~i~~~~~~~d~~ta~~~-s~~lG~ 362 (437)
T 1e9r_A 340 LVVLGGSRTDPKTNEDM-SLSLGE 362 (437)
T ss_dssp EEEEECCTTCHHHHHHH-HHHHCE
T ss_pred EEEEeCCCCCHHHHHHH-HHHcCc
Confidence 8888888 77766554 444543
No 131
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.88 E-value=14 Score=27.57 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.|+++||-- .+-+......+..++..+. . +..+|.+|++++.+
T Consensus 166 lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~l~---~--~~tviivtH~~~~~ 217 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEAT----------SSLDSKTEYLFQKAVEDLR---K--NRTLIIIAHRLSTI 217 (260)
T ss_dssp HHHHHHHCCSEEEEECCC----------CTTCHHHHHHHHHHHHHHT---T--TSEEEEECSSGGGS
T ss_pred HHHHHHcCCCEEEEECcc----------ccCCHHHHHHHHHHHHHhc---C--CCEEEEEcCCHHHH
Confidence 444556679999999943 3344444455555665553 2 34677788876544
No 132
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=70.58 E-value=11 Score=28.34 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ... +..||.+|++++.+
T Consensus 175 iAraL~~~p~lLlLDEPt----------s~LD~~~~~~l~~~l~~l---~~~-g~tviivtHd~~~~ 227 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESD----------SGLDIDALKVVADGVNSL---RDG-KRSFIIVTHYQRIL 227 (267)
T ss_dssp HHHHHHHCCSEEEEESTT----------TTCCHHHHHHHHHHHHTT---CCS-SCEEEEECSSGGGG
T ss_pred HHHHHHhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHH---Hhc-CCEEEEEeeCHHHH
Confidence 344556679999999943 344444444444444444 333 56677888876654
No 133
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=70.15 E-value=15 Score=27.48 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||-- .+-+......+..++..+. . .+|.+|++++.+
T Consensus 138 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~L~~~~---~----tviivtHd~~~~ 188 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPF----------ENVDAARRHVISRYIKEYG---K----EGILVTHELDML 188 (263)
T ss_dssp HHHHHHHTCCSEEEEECTT----------TTCCHHHHHHHHHHHHHSC---S----EEEEEESCGGGG
T ss_pred HHHHHHHhCCCEEEEECCc----------cccCHHHHHHHHHHHHHhc---C----cEEEEEcCHHHH
Confidence 3445556789999999943 3444444455555555553 2 678888876544
No 134
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.84 E-value=14 Score=27.03 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+..+. .+..+|.+|++++.+
T Consensus 138 lAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 138 LARAVYSNADIYLFDDPL----------SAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHCCSEEEEESTT----------TTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHhcCCCEEEEeCcc----------cccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 444556679999999943 3333433333333332112222 245677888876654
No 135
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=69.02 E-value=7.8 Score=25.30 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=40.7
Q ss_pred HHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 98 LVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 98 ~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
.|++.+ ....++.+ -...+ .++.-.-+..++.+|...|...++++|+.+|+..|+++.-
T Consensus 15 Ri~r~~-g~~rIS~~-a~~~l----~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 15 QIFSHY-VKTPVTRD-AYKIV----EKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHHHHH-HCSCBCHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHC-CCCccCHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 466666 33333332 12223 2345566788888898889888999999999999998854
No 136
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=67.11 E-value=15 Score=27.14 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||--+ +-+......+..++..+. .. +..+|.+|++++.+
T Consensus 154 iAraL~~~p~lllLDEPts----------~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDS----------GLDIDALKVVARGVNAMR---GP-NFGALVITHYQRIL 206 (250)
T ss_dssp HHHHHHHCCSEEEEECGGG----------TTCHHHHHHHHHHHHHHC---ST-TCEEEEECSSSGGG
T ss_pred HHHHHHcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH---hc-CCEEEEEecCHHHH
Confidence 4445566799999999443 334444455555555552 22 55677888876654
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=66.98 E-value=2.6 Score=30.05 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHcCCe--EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 5 VFRLAKENAPA--IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 5 if~~A~~~~P~--il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
+...+....|. +|+|||+..+.... ......++..+.... ...++.+|.+|+..
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d-------~~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDK-------PAMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSC-------GGGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCC-------HHHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 44445556788 99999999876321 111223333332222 22356778887765
No 138
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.96 E-value=11 Score=28.59 Aligned_cols=55 Identities=24% Similarity=0.371 Sum_probs=33.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.+|++||- ..+-+......+..++..+ ....+..||.+|++.+.+.
T Consensus 154 iAraL~~~P~lLlLDEP----------ts~LD~~~~~~i~~~l~~l---~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEP----------TAGLDPMGVSEIMKLLVEM---QKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHTTCCSEEEEECT----------TTTCCHHHHHHHHHHHHHH---HHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHcCCCEEEEECc----------cccCCHHHHHHHHHHHHHH---HhhCCCEEEEEecCHHHHH
Confidence 44455677999999993 3344444444444455444 2112566888888877654
No 139
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.04 E-value=2.7 Score=32.49 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=35.4
Q ss_pred HHHHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 030674 3 RDVFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (173)
Q Consensus 3 ~~if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (173)
..+....+. ..|.+|+||.+..+........ +........+..++..|..+....++.||++..
T Consensus 192 ~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 192 DDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp HHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 344555556 6789999999999985321111 111111234455555555444444666776644
No 140
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=65.89 E-value=8.4 Score=28.68 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=32.9
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||-- .+-+......+..++..+. ...+..+|.+|++++.+
T Consensus 138 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPT----------SALDLANQDIVLSLLIDLA---QSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp HHHHHHHTTCSEEEESSSS----------TTSCHHHHHHHHHHHHHHH---HTSCCEEEEEESCHHHH
T ss_pred HHHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHH
Confidence 3445556789999999943 3444444455555555542 22245677888876543
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=65.58 E-value=4.6 Score=32.43 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=35.6
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
+...+....|.+|+||++-.++....+. .+....-.+.+..++..|..+....++.||+++...
T Consensus 265 ~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 3444556789999999999887543211 111122234445566666555445567777777653
No 142
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=65.48 E-value=2.4 Score=33.35 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.7
Q ss_pred HHHcCCeEEEEcccccccc
Q 030674 9 AKENAPAIIFIDEVDAIAT 27 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~ 27 (173)
++...|.+|+||++..+.+
T Consensus 135 ~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HTTTCCSEEEEECGGGCCC
T ss_pred HhcCCCCEEEEcChHhhcc
Confidence 3356799999999999985
No 143
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=65.21 E-value=6.8 Score=31.03 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHcCCeEEEEcccccccccccCC-CCCC--chHHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 030674 10 KENAPAIIFIDEVDAIATARFDA-QTGA--DREVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~~~-~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (173)
+...+.+|+||.+..+.+..... ..+. .....+.++.++..|..+....++.||++..-
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 34668999999999998532111 0011 00122445556666654434456667666543
No 144
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=64.69 E-value=20 Score=26.39 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+. . +..+|.+|++++.+
T Consensus 156 iAraL~~~p~lllLDEPt----------s~LD~~~~~~i~~~l~~~~----~-g~tviivtH~~~~~ 207 (247)
T 2ff7_A 156 IARALVNNPKILIFDEAT----------SALDYESEHVIMRNMHKIC----K-GRTVIIIAHRLSTV 207 (247)
T ss_dssp HHHHHTTCCSEEEECCCC----------SCCCHHHHHHHHHHHHHHH----T-TSEEEEECSSGGGG
T ss_pred HHHHHhcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHc----C-CCEEEEEeCCHHHH
Confidence 344445679999999944 3444444455555555552 1 34577778776543
No 145
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=62.63 E-value=7.7 Score=28.49 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
+..|-...|.+|++||-- .+-+......+..++..+ ....+..||.+|++++
T Consensus 156 iAral~~~p~llllDEPt----------s~LD~~~~~~i~~~l~~l---~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 156 IARALANNPPIILADQPT----------WALDSKTGEKIMQLLKKL---NEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHH---HHHHCCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHHcCCEEEEEcCCHH
Confidence 444556679999999933 344444444444455444 2233566888888765
No 146
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=61.89 E-value=8.6 Score=28.85 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-- .+-+......+..++..+. .. +..||.+|++.+.+
T Consensus 170 lAraL~~~p~lllLDEPt----------s~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPT----------SALDPEMVGEVLSVMKQLA---NE-GMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHHCCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 445556779999999933 4444544555555555552 22 55678888876543
No 147
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=61.64 E-value=11 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 130 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 130 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+..++..|...+...+++.|+.+|+..|+...
T Consensus 54 i~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 54 ITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 34456666666766778899999999998653
No 148
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=61.41 E-value=21 Score=26.65 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=29.3
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.|.+|++|| +..+-+......+..++..+ ....+..+|.+|++.+.+
T Consensus 165 ~p~lLllDE----------Pts~LD~~~~~~i~~~l~~l---~~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 165 TPRWLFLDE----------PTSALDLYHQQHTLRLLRQL---TRQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp CCEEEEECC----------CCSSCCHHHHHHHHHHHHHH---HHHSSEEEEEECSCHHHH
T ss_pred CCCEEEEeC----------ccccCCHHHHHHHHHHHHHH---HHcCCCEEEEEEcCHHHH
Confidence 899999999 33444444444444555544 233456788888876543
No 149
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=61.11 E-value=4.6 Score=28.56 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=12.9
Q ss_pred CCeEEEEcccccccc
Q 030674 13 APAIIFIDEVDAIAT 27 (173)
Q Consensus 13 ~P~il~ide~d~l~~ 27 (173)
.|.+|+||++-.+..
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 489999999998864
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.49 E-value=3.8 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=30.3
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
...|.+|++||.-..+....+.. +....-.+....++..+..+....++.||.+|+....
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~-~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCST-THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--
T ss_pred CCceeEEEECChHHHhccccCCC-cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC
Confidence 56799999999887764321111 1111111223344444433333346777888775554
No 151
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=59.40 E-value=8.7 Score=28.71 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.+|++||-- .+-+......+..++..+. .. +..||.+|++.+.+
T Consensus 163 ~lAraL~~~p~lllLDEPt----------s~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPT----------SALDPELVGEVLRIMQQLA---EE-GKTMVVVTHEMGFA 216 (262)
T ss_dssp HHHHHHHTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHHH---HT-TCCEEEECSCHHHH
T ss_pred HHHHHHhcCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 3455556789999999933 3444444455555555552 22 44577788876543
No 152
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=59.33 E-value=12 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 130 IAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 130 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
|..++..|...|...+++.|+.+|+..|+..
T Consensus 76 i~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 76 ITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 4456666777777778889999999999964
No 153
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=59.29 E-value=17 Score=24.31 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 129 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 129 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
-|..+...|...+...++++|+.+|+..|++..-
T Consensus 44 FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 44 FAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3455666677777788889999999999998754
No 154
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=58.37 E-value=21 Score=25.81 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=30.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..+|.+|++.+
T Consensus 151 laral~~~p~lllLDEPt----------~~LD~~~~~~~~~~l~~l~---~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 151 IARALANEPILLFADEPT----------GNLDSANTKRVMDIFLKIN---EG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHTTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHH
T ss_pred HHHHHHcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHH---HC-CCEEEEEcCCHH
Confidence 344445679999999943 3444444455555555542 22 456777887654
No 155
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=57.80 E-value=17 Score=21.46 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
|..+-...+..+|...+...++..|+.+|+.-|++..
T Consensus 30 ~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 30 FTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 5567777888899989988899999999999998754
No 156
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.52 E-value=3.7 Score=31.49 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=33.0
Q ss_pred HHHHHHH-cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 030674 5 VFRLAKE-NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (173)
Q Consensus 5 if~~A~~-~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (173)
+....+. ..|.+|+||.+..++....... +........+..++..|..+....++.||++.
T Consensus 195 l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~n 256 (322)
T 2i1q_A 195 IEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVLVTN 256 (322)
T ss_dssp HHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 4444555 5689999999999875321111 11111123445555555544344466666654
No 157
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=57.34 E-value=13 Score=27.74 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=32.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||-- .+-+......+..++..+. .. +..||.+|++++.+
T Consensus 157 lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tiiivtHd~~~~ 209 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPT----------SGLDVLNAREVRKILKQAS---QE-GLTILVSSHNMLEV 209 (256)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEEECCHHHH
T ss_pred HHHHHHcCCCEEEEeCCc----------cccCHHHHHHHHHHHHHHH---hC-CCEEEEEcCCHHHH
Confidence 444556779999999933 3444544555555555552 22 45677788775543
No 158
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.24 E-value=13 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=29.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|.++++||--+-+ +......+..++..+. .. +..+|.+|++++.+.
T Consensus 144 laraL~~~p~lllLDEPts~L----------D~~~~~~l~~~l~~~~---~~-g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 144 LASTLLVNAEIYVLDDPVVAI----------DEDSKHKVLKSILEIL---KE-KGIVIISSREELSYC 197 (214)
T ss_dssp HHHHTTSCCSEEEEESTTTTS----------CTTTHHHHHHHHHHHH---HH-HSEEEEEESSCCTTS
T ss_pred HHHHHHhCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 334445679999999954322 2222233444444442 12 345777888776554
No 159
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.48 E-value=5.7 Score=30.96 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHHHHHHH--cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 4 DVFRLAKE--NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 4 ~if~~A~~--~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
.+....+. ..+.+|+||.+-.++....... +........+..++..|..+....++.||+++.-..
T Consensus 208 ~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 208 YVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 34455555 6789999999999984321110 111111123455555554444445666776655433
No 160
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=54.18 E-value=24 Score=23.41 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 123 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
..|...-.+.+..+|..++....+..|+..|++.|++-..|-
T Consensus 61 nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 102 (123)
T 2nqb_D 61 NSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPG 102 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcH
Confidence 345555566788889999988888999999999999888773
No 161
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=53.85 E-value=37 Score=26.43 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=26.0
Q ss_pred HcC-CeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 11 ENA-PAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 11 ~~~-P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
... |.++++||..+-+ +......+..++..+. .. + -||++|++++
T Consensus 302 ~~~~~~~lllDEp~~~L----------D~~~~~~l~~~l~~~~---~~-~-~vi~~th~~~ 347 (371)
T 3auy_A 302 IGNRVECIILDEPTVYL----------DENRRAKLAEIFRKVK---SI-P-QMIIITHHRE 347 (371)
T ss_dssp HSSCCSEEEEESTTTTC----------CHHHHHHHHHHHHHCC---SC-S-EEEEEESCGG
T ss_pred hcCCCCeEEEeCCCCcC----------CHHHHHHHHHHHHHhc---cC-C-eEEEEEChHH
Confidence 567 9999999988533 3333344444444442 22 2 3667777654
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=53.21 E-value=5.2 Score=30.12 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHcCCeEEEEccccccc
Q 030674 7 RLAKENAPAIIFIDEVDAIA 26 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~ 26 (173)
..+..+.|.+|+|||.-.+.
T Consensus 141 a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 141 YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHTTCCSEEEEEEEC---
T ss_pred HHHHhcCCCEEEEcCccccC
Confidence 33456789999999999876
No 163
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.87 E-value=17 Score=26.60 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||-- .+-+......+..++..+. . .+..+|.+|++++.
T Consensus 150 lAraL~~~p~lllLDEPt----------s~LD~~~~~~l~~~l~~~~---~-~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 150 IGRALMSRPKLLMMDEPS----------LGLAPILVSEVFEVIQKIN---Q-EGTTILLVEQNALG 201 (240)
T ss_dssp HHHHHTTCCSEEEEECTT----------TTCCHHHHHHHHHHHHHHH---H-TTCCEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEcCCc----------ccCCHHHHHHHHHHHHHHH---H-CCCEEEEEecCHHH
Confidence 444556779999999943 3444444455555555553 1 24457777877643
No 164
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=52.78 E-value=26 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 123 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
..|...-.+.+..+|..++....+.+|+..|++.|++-..|-
T Consensus 64 nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpG 105 (126)
T 1tzy_B 64 NSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPG 105 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcH
Confidence 345555566788889999988888999999999999888773
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=52.65 E-value=23 Score=29.26 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecCCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 92 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~ 92 (173)
.+.+|++||++..- .. .+... .+..||+||.+..-.. .. +..+..+.++..+
T Consensus 243 kr~LlVLDdv~~~~---------------~~--~~~~~-------~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~ 294 (549)
T 2a5y_B 243 PNTLFVFDDVVQEE---------------TI--RWAQE-------LRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLE 294 (549)
T ss_dssp TTEEEEEEEECCHH---------------HH--HHHHH-------TTCEEEEEESBGGGGG-GC---CSCEEEEECCCCC
T ss_pred CcEEEEEECCCCch---------------hh--ccccc-------CCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCC
Confidence 38999999998521 11 11111 3566888887643221 11 1234679999999
Q ss_pred HHHHHHHHHHHHccCCCCCc--CCHHHHhcCCCCC
Q 030674 93 RRQKRLVFQVCTAKMNLSDE--VDLEDYVSRPDKI 125 (173)
Q Consensus 93 ~~~R~~il~~~l~~~~~~~~--~~~~~la~~t~g~ 125 (173)
.++-.++|..........+. -...++++.|.|.
T Consensus 295 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 295 IDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp HHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 99999999887432211111 1244566666665
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=51.86 E-value=19 Score=28.40 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHcCCeEEEEccccccccc-ccCCCCCC--chHHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 030674 10 KENAPAIIFIDEVDAIATA-RFDAQTGA--DREVQRILMELLNQMDGFDQTVNVKVIMAT 66 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~-~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (173)
+...|.+++||.+-.+++. .-....+. .....+.++.++..|..+....++.||++.
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3467899999999998862 21111111 112345666666666655445566666654
No 167
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=49.48 E-value=22 Score=24.63 Aligned_cols=33 Identities=3% Similarity=-0.066 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 129 EIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 129 di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
-+..+...|...|...++++|+.+|+..|+...
T Consensus 38 f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~l 70 (154)
T 1f1e_A 38 MAEYVANAAKSVLDASGKKTLMEEHLKALADVL 70 (154)
T ss_dssp HHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 345567778888888889999999999999664
No 168
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=48.71 E-value=27 Score=25.90 Aligned_cols=37 Identities=5% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
..-.-+++++.+|...+-..++++|+.+|+.-|+++.
T Consensus 190 vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 190 VLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 3445566777788888888889999999999999875
No 169
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=48.40 E-value=11 Score=29.39 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=30.6
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
..|.+|+||++-+++....... +........+..++..|..+....++.||.+++.....
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~-~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGR-GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCST-TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred CCCCEEEEeCchHhhhhhhccc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 5799999999998873321111 11111112334444444433334466777777765544
No 170
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.98 E-value=18 Score=27.35 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEE--EEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKV--IMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~v--i~ttn~~~~l 72 (173)
.+..|-...|.+|++||-- .+-+......+..++..+. .. +..| |.+|++.+.+
T Consensus 171 ~lAraL~~~p~lLlLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPA----------AGLDFIARESLLSILDSLS---DS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHTCCSEEEEESTT----------TTCCHHHHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGC
T ss_pred HHHHHHhCCCCEEEEeCCc----------cccCHHHHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHH
Confidence 3445556789999999933 3444444455555555542 11 2224 7778876544
No 171
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=47.67 E-value=44 Score=25.64 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=30.8
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecC
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 88 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~ 88 (173)
|-...|.++++||--+ +-+......+..++..+ ..... .+|.+|++++ +.. .+|+++.+
T Consensus 268 ~l~~~p~~lllDEp~~----------~LD~~~~~~l~~~l~~~---~~~~~-~vi~~sH~~~-----~~~--~~d~~~~l 326 (339)
T 3qkt_A 268 YLAGEISLLILDEPTP----------YLDEERRRKLITIMERY---LKKIP-QVILVSHDEE-----LKD--AADHVIRI 326 (339)
T ss_dssp HTTTTTCEEEEECCCT----------TCCHHHHHHHHHHHHHT---GGGSS-EEEEEESCGG-----GGG--GCSEEEEE
T ss_pred HhcCCCCEEEEECCCC----------CCCHHHHHHHHHHHHHH---HhcCC-EEEEEEChHH-----HHH--hCCEEEEE
Confidence 3345699999999543 33333333334444443 22223 4666776533 223 45555554
Q ss_pred C
Q 030674 89 P 89 (173)
Q Consensus 89 ~ 89 (173)
.
T Consensus 327 ~ 327 (339)
T 3qkt_A 327 S 327 (339)
T ss_dssp E
T ss_pred E
Confidence 3
No 172
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=47.04 E-value=32 Score=24.41 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 130 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 130 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
|..+...|...|...++++|+.+|+..|++..-
T Consensus 50 I~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 50 IHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 444556677777788889999999999998643
No 173
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.91 E-value=14 Score=35.37 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCeEEEEccccccccccc---CCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARF---DAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~---~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
|..+...++..+|.+|++|.+.++.+... +..+....-..+.+++.+..|.+.-.++++.+|.+....
T Consensus 1498 l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~ 1568 (1706)
T 3cmw_A 1498 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 1568 (1706)
T ss_dssp HHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred HHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccc
Confidence 34566777889999999999999998652 233344444567777777777666566678888876533
No 174
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=45.46 E-value=35 Score=26.98 Aligned_cols=54 Identities=19% Similarity=0.457 Sum_probs=32.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.+|++||-= .+-+......+..++..+ ....+..+|.+|++.+.+
T Consensus 174 IArAL~~~P~lLLlDEPT----------s~LD~~~~~~i~~lL~~l---~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 174 IARALASNPKVLLCDQAT----------SALDPATTRSILELLKDI---NRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHTTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHH---HHHSCCEEEEEESCHHHH
T ss_pred HHHHHhcCCCEEEEECCC----------ccCCHHHHHHHHHHHHHH---HHhCCCEEEEEecCHHHH
Confidence 344445679999999933 334444444444455444 333366788888876643
No 175
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=45.02 E-value=65 Score=21.62 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=31.6
Q ss_pred HHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCCCCccceecC
Q 030674 9 AKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEF 88 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~grf~~~i~~ 88 (173)
|-...|.++++||-- .+-+......+..++..+ ... +..+|.+|++.+ + .. .+|+.+.+
T Consensus 77 al~~~p~lllLDEPt----------~~LD~~~~~~l~~~l~~~---~~~-~~tiiivsH~~~-~----~~--~~d~ii~l 135 (148)
T 1f2t_B 77 YLAGEISLLILDEPT----------PYLDEERRRKLITIMERY---LKK-IPQVILVSHDEE-L----KD--AADHVIRI 135 (148)
T ss_dssp HHHSSCSEEEEESCS----------CTTCHHHHHHHHHHHHHT---GGG-SSEEEEEESCGG-G----GG--GCSEEEEE
T ss_pred HHcCCCCEEEEECCC----------ccCCHHHHHHHHHHHHHH---Hcc-CCEEEEEEChHH-H----HH--hCCEEEEE
Confidence 334679999999943 333343334444444444 222 344666777652 2 23 45565555
No 176
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=43.91 E-value=70 Score=24.69 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCCCCCCCeEEEEEeCC----CCCCCccccCCCCccceecCCCC-------------CHHHHHHHHHHHH
Q 030674 42 RILMELLNQMDGFDQTVNVKVIMATNR----ADTLDPALLRPGRLDRKIEFPLP-------------DRRQKRLVFQVCT 104 (173)
Q Consensus 42 ~~~~~ll~~l~~~~~~~~v~vi~ttn~----~~~ld~al~r~grf~~~i~~~~p-------------~~~~R~~il~~~l 104 (173)
.+...+...++.+-+.+ .|.+||. ++.|-.++.+|.||--.-.|.+| +.++-..-...+.
T Consensus 100 ~iK~~lf~~l~~~~~~~---aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~ 176 (319)
T 3ado_A 100 DLKRKIFAQLDSIVDDR---VVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALM 176 (319)
T ss_dssp HHHHHHHHHHHTTCCSS---SEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc---ceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHH
Confidence 55667888888763321 2333332 33455667788887443333333 2244444444444
Q ss_pred ccCCCCCcCCHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 105 AKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 105 ~~~~~~~~~~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
+.....+- .+++.++||-.--|....-+.+...+.++ ..+.+|++.+++.
T Consensus 177 ~~~gk~pv----~v~kd~pGFi~NRl~~~~~~EA~~lv~eG--vas~edID~~~~~ 226 (319)
T 3ado_A 177 RKIGQSPV----RVLKEIDGFVLNRLQYAIISEAWRLVEEG--IVSPSDLDLVMSD 226 (319)
T ss_dssp HHTTCEEE----ECSSCCTTTTHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHT
T ss_pred HHhCCccC----CcCCCCCCEeHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHh
Confidence 44332221 14466788877666554444333444443 3677888877754
No 177
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.98 E-value=46 Score=34.13 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCeEEEEEeC----CCCCCCccccCCCCccceecCCCCCHHHHHHHHHH
Q 030674 58 VNVKVIMATN----RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQV 102 (173)
Q Consensus 58 ~~v~vi~ttn----~~~~ld~al~r~grf~~~i~~~~p~~~~R~~il~~ 102 (173)
....+++|.| ....||++++. || +.|.+..||.+...+++-.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHHHHH
Confidence 4577888888 45689999999 88 4599999999988887644
No 178
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=42.80 E-value=19 Score=26.42 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||-- .+-+......+..++..+. ...+..||.+|++.+.
T Consensus 137 lAral~~~p~lllLDEPt----------s~LD~~~~~~~~~~l~~l~---~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 137 LARALVIQPRLLLLDEPL----------SAVDLKTKGVLMEELRFVQ---REFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHTTCCSSBEEESTT----------SSCCHHHHHHHHHHHHHHH---HHHTCCEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 444556779999999933 3444444455555555542 2223457778887554
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.58 E-value=54 Score=23.18 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
..+-+.++...|..+++|.+..+..... ......+....+..... ..++.+++++.........+..+
T Consensus 125 ~~~~~~~~~~~~~~vviD~~~~l~~~~~-----~~~~~~~~~~~L~~~a~----~~~i~vi~~~q~~~~~~~~~~~~ 192 (251)
T 2zts_A 125 RYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTILTTEAPDPQHGKLSRY 192 (251)
T ss_dssp HHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEEEEECCC----CCSSSS
T ss_pred HHHHHHHHhcCCcEEEEEcHHHHhhhcc-----ChHHHHHHHHHHHHHHH----HcCCCeEEEEEEecccccccccC
Confidence 4455666778899999999998874321 11222233333333332 23566777665443333333333
No 180
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=42.10 E-value=39 Score=24.10 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhCCC
Q 030674 124 KISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 164 (173)
Q Consensus 124 g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~p~ 164 (173)
.|...-++.++.+|...+....+.+++..|+..|++-..|.
T Consensus 32 s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpg 72 (192)
T 2jss_A 32 SFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPG 72 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCH
Confidence 35555667788888888877777889999999999887775
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=41.27 E-value=56 Score=23.11 Aligned_cols=54 Identities=9% Similarity=0.190 Sum_probs=30.4
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
+-+..+...|.+|+||++..+... ......+.+..+...+. ..++.+|++++..
T Consensus 120 i~~~~~~~~~~~vviD~~~~l~~~-------~~~~~~~~l~~l~~~~~----~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 120 LRQAIRDINAKRVVVDSVTTLYIN-------KPAMARSIILQLKRVLA----GTGCTSIFVSQVS 173 (247)
T ss_dssp HHHHHHHHTCCEEEEETSGGGTTT-------CGGGHHHHHHHHHHHHH----HTTCEEEEEEECC
T ss_pred HHHHHHHhCCCEEEECCchHhhcC-------CHHHHHHHHHHHHHHHH----HCCCeEEEEecCC
Confidence 334445567999999999988621 11123345555555442 2245566655543
No 182
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=40.88 E-value=46 Score=26.27 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=31.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
.+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 149 alArAL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPL----------SNLDAKLRVRMRAELKKL---QRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHTCCSEEEEECTT----------TTSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHHhcCCCEEEECCCC----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEECCCHHH
Confidence 3455567789999999932 334444444444444444 22235567888887654
No 183
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=40.88 E-value=12 Score=26.93 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=22.0
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
...|.+|++||--+- ....+..++.. + .. +..+| +|++++.++
T Consensus 120 ~~~p~lllLDEPts~--------------~~~~l~~~l~~---l-~~-g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 120 TLNDAFVILDEAQNT--------------TPAQMKMFLTR---L-GF-GSKMV-VTGDITQVD 162 (208)
T ss_dssp CBCSEEEEECSGGGC--------------CHHHHHHHHTT---B-CT-TCEEE-EEEC-----
T ss_pred hcCCCEEEEeCCccc--------------cHHHHHHHHHH---h-cC-CCEEE-EECCHHHHh
Confidence 456999999995432 12333334433 3 22 45567 888777665
No 184
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=40.79 E-value=43 Score=26.20 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=27.3
Q ss_pred HcCC--eEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 11 ENAP--AIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 11 ~~~P--~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
...| .+|++||.++=+ +......+..++..+. . +.-||++|++++-
T Consensus 311 ~~~~~~~~LlLDEpt~~L----------D~~~~~~l~~~L~~l~----~-~~~vi~itH~~~~ 358 (415)
T 4aby_A 311 VLGADTPSVVFDEVDAGI----------GGAAAIAVAEQLSRLA----D-TRQVLVVTHLAQI 358 (415)
T ss_dssp HHCCSSSEEEESSTTTTC----------CHHHHHHHHHHHHHHT----T-TSEEEEECSCHHH
T ss_pred HhCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh----C-CCEEEEEeCcHHH
Confidence 3467 999999987533 3333344444555542 1 3457777877643
No 185
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=40.60 E-value=47 Score=25.96 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||-= .+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 138 lAraL~~~P~lLLLDEP~----------s~LD~~~~~~l~~~l~~l---~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 138 LARALVTNPKILLLDEPL----------SALDPRTQENAREMLSVL---HKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHTTSCCSEEEEESSS----------TTSCHHHHHHHHHHHHHH---HHHTTCEEEEEESCHHH
T ss_pred HHHHHHcCCCEEEEECcc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 344445679999999932 334444444444444444 22235567888887654
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=40.11 E-value=14 Score=29.00 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHcCCeEEEEccccccccccc-CCCCCCc--hHHHHHHHHHHHhccCCCCCCCeEEEEEeCC
Q 030674 10 KENAPAIIFIDEVDAIATARF-DAQTGAD--REVQRILMELLNQMDGFDQTVNVKVIMATNR 68 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~-~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~ 68 (173)
+...+.+|+||.+-.+..... ....+.. ....+.++.++..|..+....++.||++..-
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~ 199 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 199 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 356789999999999985321 1110110 0112344444444443333445667765443
No 187
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=39.63 E-value=26 Score=27.47 Aligned_cols=57 Identities=14% Similarity=0.266 Sum_probs=30.6
Q ss_pred HHcCCeEEEEccccccccccc-CCCCCC--ch--HHHHHHHHHHHhccCCCCCCCeEEEEEe
Q 030674 10 KENAPAIIFIDEVDAIATARF-DAQTGA--DR--EVQRILMELLNQMDGFDQTVNVKVIMAT 66 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~~~~-~~~~~~--~~--~~~~~~~~ll~~l~~~~~~~~v~vi~tt 66 (173)
+...|.+|+||-+-.+++... ....+. .. ...+.++.++..|..+....++.+|.+-
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 445799999999999986421 111111 01 2345566666555444344566666543
No 188
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=39.59 E-value=44 Score=26.22 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=31.3
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.+
T Consensus 156 lArAL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~a 209 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPF----------AAIDTQIRRELRTFVRQV---HDEMGVTSVFVTHDQEEA 209 (355)
T ss_dssp HHHHHTTCCSEEEEESTT----------CCSSHHHHHHHHHHHHHH---HHHHTCEEEEECSCHHHH
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEECCCHHHH
Confidence 444556779999999932 334444444444444444 222245688888876543
No 189
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=38.80 E-value=47 Score=20.27 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhc
Q 030674 88 FPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVS 120 (173)
Q Consensus 88 ~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~ 120 (173)
....+.+++...|..+|....+++...|+....
T Consensus 11 ~~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~ 43 (82)
T 2dod_A 11 RAIVPLEARMKQFKDMLLERGVSAFSTWEKELH 43 (82)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHH
Confidence 456788999999999999999998888877653
No 190
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=38.54 E-value=75 Score=26.44 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=29.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.|+++||.-+ +-+......+...+..+. . +..+|.+|++++.+
T Consensus 491 iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~tvi~itH~~~~~ 542 (582)
T 3b60_A 491 IARALLRDSPILILDEATS----------ALDTESERAIQAALDELQ---K--NRTSLVIAHRLSTI 542 (582)
T ss_dssp HHHHHHHCCSEEEEETTTS----------SCCHHHHHHHHHHHHHHH---T--TSEEEEECSCGGGT
T ss_pred HHHHHHhCCCEEEEECccc----------cCCHHHHHHHHHHHHHHh---C--CCEEEEEeccHHHH
Confidence 3444456799999999543 333444444444444442 1 34577778776543
No 191
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=38.51 E-value=49 Score=25.99 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.+
T Consensus 144 lArAL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 144 LARALVKQPKVLLFDEPL----------SNLDANLRMIMRAEIKHL---QQELGITSVYVTHDQAEA 197 (359)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHH---HHHHCCEEEEEESCHHHH
T ss_pred HHHHHHcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEcCCHHHH
Confidence 445556779999999932 334444444444444444 222255688888876543
No 192
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=37.74 E-value=51 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 152 lArAL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 152 VARAIVVEPDVLLMDEPL----------SNLDAKLRVAMRAEIKKL---QQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHhcCCCEEEEcCCC----------ccCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHH
Confidence 445556779999999933 333444444444444444 22225568888887654
No 193
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.50 E-value=1e+02 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 13 APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 13 ~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
.|.++++||..+-+ +......+..++..+. . +.-+|.+|.+++
T Consensus 241 ~~~~lllDEp~~~L----------D~~~~~~l~~~l~~~~---~--~~~vi~~tH~~~ 283 (322)
T 1e69_A 241 PSPFYVLDEVDSPL----------DDYNAERFKRLLKENS---K--HTQFIVITHNKI 283 (322)
T ss_dssp CCSEEEEESCCSSC----------CHHHHHHHHHHHHHHT---T--TSEEEEECCCTT
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHHHHHhc---C--CCeEEEEECCHH
Confidence 57899999977533 2323344444555542 1 334667777654
No 194
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=37.42 E-value=24 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.8
Q ss_pred HHHHHcCCeEEEEcccccccc
Q 030674 7 RLAKENAPAIIFIDEVDAIAT 27 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~~ 27 (173)
+.|+.+.|.|+++|+--.+..
T Consensus 70 ~e~~~~~P~vV~vd~~N~i~~ 90 (97)
T 1uhe_A 70 DEINAHKPSIVLVDEKNEILE 90 (97)
T ss_dssp HHHHHCCCEEEEECTTSCEEE
T ss_pred HHHhcCCCEEEEECCCCCEEE
Confidence 568899999999999665543
No 195
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=37.19 E-value=32 Score=21.50 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
++...+..+..++...|...++++|+.+|+.-++++
T Consensus 44 ~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 44 LAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 555666777888888888889999999999988765
No 196
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=36.55 E-value=44 Score=26.16 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 151 lAraL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPF----------SNLDARMRDSARALVKEV---QSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCGGGHHHHHHHHHHH---HHHHCCEEEEEESCHHH
T ss_pred HHHHHHhCCCEEEEECCc----------ccCCHHHHHHHHHHHHHH---HHhcCCEEEEEeCCHHH
Confidence 445556779999999933 222232233334444443 22224568888887654
No 197
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=36.16 E-value=17 Score=22.94 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 131 AAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 131 ~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
..++..|...+...+++.|+.+|+..|++.
T Consensus 47 ~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 47 ESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 345555666665666788999999888765
No 198
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=36.10 E-value=32 Score=23.34 Aligned_cols=31 Identities=3% Similarity=-0.024 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHH-HHhcCCccCHHHHHHHHHh
Q 030674 130 IAAICQEAGMHA-VRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 130 i~~l~~~a~~~a-~~~~~~~i~~~d~~~al~~ 160 (173)
|..|+..|...+ ...+++.|+..|+..|+..
T Consensus 54 I~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 54 VRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp HHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 344556666666 5566789999999999974
No 199
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=35.48 E-value=63 Score=23.77 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=29.9
Q ss_pred HHHHcCCe-------EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 8 LAKENAPA-------IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 8 ~A~~~~P~-------il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.|-...|. ++++||-- .+-+......+..++..+. .. +..+|.+|++++.+
T Consensus 139 raL~~~p~~~~~~~~lllLDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPM----------NSLDVAQQSALDKILSALS---QQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHcCCCcCCCCCeEEEEECCc----------ccCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 33345577 99999933 3444444455555555552 22 45678888876543
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=34.89 E-value=18 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=9.9
Q ss_pred CeEEEEccccccc
Q 030674 14 PAIIFIDEVDAIA 26 (173)
Q Consensus 14 P~il~ide~d~l~ 26 (173)
+.+|+|||++...
T Consensus 116 ~~~lilDei~~~~ 128 (202)
T 2w58_A 116 VPVLMLDDLGAEA 128 (202)
T ss_dssp SSEEEEEEECCC-
T ss_pred CCEEEEcCCCCCc
Confidence 5699999997653
No 201
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=34.75 E-value=15 Score=29.75 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.5
Q ss_pred HcCCeEEEEcccccccc
Q 030674 11 ENAPAIIFIDEVDAIAT 27 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~ 27 (173)
.+.|.+|+||++..+..
T Consensus 311 ~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp TTCCCEEEEECGGGSCC
T ss_pred HcCCCEEEEccHHHhcc
Confidence 46799999999999874
No 202
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=34.73 E-value=28 Score=22.30 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.8
Q ss_pred HHHHHcCCeEEEEccccccc
Q 030674 7 RLAKENAPAIIFIDEVDAIA 26 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~ 26 (173)
+.|+.+.|.++++|+=-.+.
T Consensus 71 ~e~~~~~P~vv~vd~~N~i~ 90 (102)
T 3plx_B 71 EEAKTFKPKVVFVDENNTAT 90 (102)
T ss_dssp HHHHHCCCEEEEECTTSCEE
T ss_pred HHHhcCCCEEEEECCCCcEE
Confidence 56888999999999944444
No 203
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=34.67 E-value=46 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
.+..|-...|.++++||== .+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 143 alArAL~~~P~lLLLDEP~----------s~LD~~~r~~l~~~l~~l---~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPL----------SNLDALLRLEVRAELKRL---QKELGITTVYVTHDQAE 196 (362)
T ss_dssp HHHHHHTTCCSEEEEESGG----------GGSCHHHHHHHHHHHHHH---HHHHTCEEEEEESCHHH
T ss_pred HHHHHHHcCCCEEEEECcc----------ccCCHHHHHHHHHHHHHH---HHhCCCEEEEECCCHHH
Confidence 3445556779999999943 233333334444444444 22224567888887654
No 204
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=34.47 E-value=36 Score=22.01 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
++..-+..+..++...|...++..|+.+|+.-++++.
T Consensus 51 ~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 51 ITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 4455567777888888888889999999999888763
No 205
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=33.60 E-value=15 Score=18.95 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 130 IAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 130 i~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+..++.+|........+.-++.+|+..|+.++.
T Consensus 5 ~~EllsraQs~radDQRGLL~KEdLv~~l~df~ 37 (40)
T 2xns_C 5 LVELLNRVQSSGAHDQRGLLSNEEVFRALRDFD 37 (40)
T ss_dssp HHHHHHHHTTCSCCSCSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHhHHHH
Confidence 344555554333333355789999999988764
No 206
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=33.09 E-value=62 Score=25.69 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.+|++||= -.+-+......+..++..+ ....+..+|.+|++.+.
T Consensus 144 iArAL~~~P~lLLLDEP----------ts~LD~~~~~~l~~~l~~l---~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 144 IGRTLVAEPSVFLLDEP----------LSNLDAALRVQMRIEISRL---HKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHCCSEEEEEST----------TTTSCHHHHHHHHHHHHHH---HHHHCCEEEEECSCHHH
T ss_pred HHHHHHcCCCEEEEECC----------CcCCCHHHHHHHHHHHHHH---HHhCCCEEEEEECCHHH
Confidence 44455678999999993 2334443333333344433 22335668888887654
No 207
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=32.46 E-value=71 Score=26.58 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=29.0
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.|+++||--+ +-+....+.+...+..+. . +..+|.+|++++.+
T Consensus 491 iAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~tvi~itH~~~~~ 542 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATS----------ALDTESERAIQAALDELQ---K--NKTVLVIAHRLSTI 542 (582)
T ss_pred HHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 3444456799999999543 333333344444444442 2 34567777776543
No 208
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.39 E-value=80 Score=24.79 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHH-HHHHhccCCCCCCCeEEEEEeCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILM-ELLNQMDGFDQTVNVKVIMATNRADT 71 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~~~v~vi~ttn~~~~ 71 (173)
+..|-...|.+|++||== .+-+......+. .+..... ..+..+|.+|++.+.
T Consensus 149 lArAL~~~P~lLLLDEPt----------s~LD~~~r~~l~~~l~~~~~----~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 149 LARALAPDPELILLDEPF----------SALDEQLRRQIREDMIAALR----ANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHTTCCSEEEEESTT----------TTSCHHHHHHHHHHHHHHHH----HTTCEEEEECCCHHH
T ss_pred HHHHHHcCCCEEEEeCCc----------ccCCHHHHHHHHHHHHHHHH----hCCCEEEEEeCCHHH
Confidence 445556779999999932 333443333333 2333332 235668888887654
No 209
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=31.76 E-value=83 Score=26.12 Aligned_cols=55 Identities=7% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
++..|-...|-||++|| +..+-+......+..++..+ ....+..||.+|++.+.+
T Consensus 395 ~iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~~l~~l---~~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQ----------PSSYLDVEERYIVAKAIKRV---TRERKAVTFIIDHDLSIH 449 (538)
T ss_dssp HHHHHHHSCCSEEEEES----------TTTTCCHHHHHHHHHHHHHH---HHHTTCEEEEECSCHHHH
T ss_pred HHHHHHHcCCCEEEEeC----------CccCCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHHH
Confidence 45556677899999999 33444444444444555444 223355677778766543
No 210
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.58 E-value=13 Score=25.43 Aligned_cols=65 Identities=11% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHH--HcCCeEEEEccccccccc----ccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 7 RLAK--ENAPAIIFIDEVDAIATA----RFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 7 ~~A~--~~~P~il~ide~d~l~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
..|+ ...|.+|++||=-+-+.. |.. ..-......+....+...+..+... +..+|.+|++++.+.
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~-~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTD-RQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVE 163 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSS-CCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHH
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccC-CCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhh
Confidence 4444 445999999995544421 111 1122222334555666666665433 566777887766543
No 211
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=31.15 E-value=76 Score=18.67 Aligned_cols=32 Identities=6% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCcCCHHHHhc
Q 030674 89 PLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVS 120 (173)
Q Consensus 89 ~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~ 120 (173)
...+.++..+.|..+|....+++...|+....
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~ 41 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMK 41 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHH
Confidence 45679999999999999999998888887654
No 212
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=30.77 E-value=24 Score=25.80 Aligned_cols=9 Identities=11% Similarity=0.512 Sum_probs=7.7
Q ss_pred eEEEEcccc
Q 030674 15 AIIFIDEVD 23 (173)
Q Consensus 15 ~il~ide~d 23 (173)
-||+|||+|
T Consensus 105 kIiiLDEad 113 (212)
T 1tue_A 105 KVAMLDDAT 113 (212)
T ss_dssp SSEEEEEEC
T ss_pred CEEEEECCC
Confidence 488999988
No 213
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=30.51 E-value=99 Score=21.45 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCCCCccccCCCCccceecCCCCC---HHHHHHHHHHHHc
Q 030674 60 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD---RRQKRLVFQVCTA 105 (173)
Q Consensus 60 v~vi~ttn~~~~ld~al~r~grf~~~i~~~~p~---~~~R~~il~~~l~ 105 (173)
++||+- ++.++++++. |.|..+.|+..+ .=-|.-+++...+
T Consensus 98 ~FvIGG---a~Gl~~~v~~--rAd~~lSlS~mTfpHqL~RliL~EQiYR 141 (163)
T 1o6d_A 98 TILIGG---PYGLNEEIFA--KAHRVFSLSKMTFTHGMTVLIVLEQIFR 141 (163)
T ss_dssp EEEECC---TTCCCGGGGG--GCSEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHHHHHH
Confidence 455544 7899999999 999999888655 5566666665544
No 214
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.11 E-value=37 Score=21.13 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCeEEEEcc
Q 030674 4 DVFRLAKENAPAIIFIDE 21 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide 21 (173)
.+++..+...|.+|++|-
T Consensus 42 ~a~~~l~~~~~dlvi~d~ 59 (130)
T 3eod_A 42 DALELLGGFTPDLMICDI 59 (130)
T ss_dssp HHHHHHTTCCCSEEEECC
T ss_pred HHHHHHhcCCCCEEEEec
Confidence 445556666788888874
No 215
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=30.10 E-value=1e+02 Score=19.24 Aligned_cols=85 Identities=9% Similarity=0.183 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCC--CCCCeEEEEEeCCCCCCCccccCCC
Q 030674 3 RDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFD--QTVNVKVIMATNRADTLDPALLRPG 80 (173)
Q Consensus 3 ~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~vi~ttn~~~~ld~al~r~g 80 (173)
..+++.+....|.+|++|-- ++.. .+ -.++..+.... ..-+++++......+..-.++. .|
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~---l~~~----~g---------~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~-~g 98 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMD---IIGE----NS---------PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLH-SG 98 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETT---C-------------------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTT-CC
T ss_pred HHHHHHHhcCCCCEEEEeCC---CCCC----cH---------HHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHh-cC
Confidence 34566677778999999841 1100 00 12333343322 2334555444444444444443 34
Q ss_pred CccceecCCCCCHHHHHHHHHHHHcc
Q 030674 81 RLDRKIEFPLPDRRQKRLVFQVCTAK 106 (173)
Q Consensus 81 rf~~~i~~~~p~~~~R~~il~~~l~~ 106 (173)
-.+. +. .+.+.++-...++.++++
T Consensus 99 ~~~~-l~-KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 99 ADDY-LT-KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp CSEE-EE-SSCCHHHHHHHHHHHHHH
T ss_pred CCee-ee-CCCCHHHHHHHHHHHHhh
Confidence 3332 22 233566666666665543
No 216
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=30.06 E-value=46 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
++...+..+..++...|.-.++++|+.+|+.-++++
T Consensus 59 l~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 59 LTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 455566778888888888889999999999988765
No 217
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=30.01 E-value=1e+02 Score=25.15 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 4 DVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
.+........|-+|+||+.-++.+. .+.+....+.+..++..+. . .++.+|.+|++.+.++
T Consensus 129 ~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~~ 189 (525)
T 1tf7_A 129 RINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEYG 189 (525)
T ss_dssp HHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSSS
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCcc
Confidence 3344444567999999998876642 1223334455555666553 2 3567888888887763
No 218
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=29.99 E-value=33 Score=24.25 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHccCCCCCcCCHHHHhcCCC------CCCHHHHHHHHHHH
Q 030674 91 PDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPD------KISAAEIAAICQEA 137 (173)
Q Consensus 91 p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~------g~s~~di~~l~~~a 137 (173)
|+.++|...|..+|...++++...|+....... .+++++=..+.+.-
T Consensus 2 ~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al~~~eRk~~f~~y 54 (190)
T 3hfh_A 2 PLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNPXERXQVFDQY 54 (190)
T ss_dssp CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcCChHHHHHHHHHH
Confidence 889999999999999999998888988766542 13566665555443
No 219
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=29.95 E-value=37 Score=23.78 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=11.5
Q ss_pred CeEEEEcccccccc
Q 030674 14 PAIIFIDEVDAIAT 27 (173)
Q Consensus 14 P~il~ide~d~l~~ 27 (173)
-.+|++||+|.+..
T Consensus 159 ~~~lViDEah~~~~ 172 (220)
T 1t6n_A 159 IKHFILDECDKMLE 172 (220)
T ss_dssp CCEEEEESHHHHHS
T ss_pred CCEEEEcCHHHHhc
Confidence 46899999998863
No 220
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=29.65 E-value=1e+02 Score=25.69 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=29.7
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.|+++||.=+ +-+....+.+...+..+. . +..+|..|++++.+
T Consensus 490 lARal~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~tvi~itH~l~~~ 541 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTS----------SVDPITEKRILDGLKRYT---K--GCTTFIITQKIPTA 541 (587)
T ss_dssp HHHHHHTCCSEEEEESCCT----------TSCHHHHHHHHHHHHHHS---T--TCEEEEEESCHHHH
T ss_pred HHHHHHcCCCEEEEECCcc----------cCCHHHHHHHHHHHHHhC---C--CCEEEEEecChHHH
Confidence 3445566799999999442 333333344444444442 1 45577778776543
No 221
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=29.52 E-value=97 Score=24.51 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=24.5
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRA 69 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~ 69 (173)
..|.++++||.++-+ +......+..++..+. .. +.-+|.+|+++
T Consensus 354 ~~~~~lllDEp~~~L----------D~~~~~~l~~~l~~~~---~~-~~~~ii~th~~ 397 (430)
T 1w1w_A 354 QPSPFFVLDEVDAAL----------DITNVQRIAAYIRRHR---NP-DLQFIVISLKN 397 (430)
T ss_dssp SCCSEEEESSTTTTC----------CHHHHHHHHHHHHHHC---BT-TBEEEEECSCH
T ss_pred CCCCEEEeCCCcccC----------CHHHHHHHHHHHHHHh---cC-CCEEEEEECCH
Confidence 458899999988544 2222333444444442 22 34466666653
No 222
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=29.36 E-value=95 Score=18.61 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHccCCCCCcC--CHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 92 DRRQKRLVFQVCTAKMNLSDEV--DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 92 ~~~~R~~il~~~l~~~~~~~~~--~~~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+...-.++++..-....+++++ -+.++|. .-+..++..|+..|..|+..++...|+.-.+++.
T Consensus 7 ~k~~L~~Lv~~idp~~~ld~~vee~ll~lAD-------dFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 7 TKKKLQDLVREVDPNEQLDEDVEEMLLQIAD-------DFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 3444445555554444444331 1222322 3466788888889988888899999998888764
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=28.91 E-value=40 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=13.1
Q ss_pred CCeEEEEcccccccc
Q 030674 13 APAIIFIDEVDAIAT 27 (173)
Q Consensus 13 ~P~il~ide~d~l~~ 27 (173)
.|.+|+||++-.+.+
T Consensus 133 ~~~livlDe~~~~~~ 147 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHI 147 (279)
T ss_dssp TCSEEEEECGGGGCC
T ss_pred CCCEEEECCHHHhcC
Confidence 699999999998764
No 224
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=28.71 E-value=1.4e+02 Score=24.75 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=29.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
...|-...|.|+++||.=+ +-+....+.+...+..+. . +..+|..|++++.+
T Consensus 488 lAral~~~p~illlDEpts----------~LD~~~~~~i~~~l~~~~---~--~~t~i~itH~l~~~ 539 (578)
T 4a82_A 488 IARIFLNNPPILILDEATS----------ALDLESESIIQEALDVLS---K--DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHCCSEEEEESTTT----------TCCHHHHHHHHHHHHHHT---T--TSEEEEECSSGGGT
T ss_pred HHHHHHcCCCEEEEECccc----------cCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 3344456799999999442 333333444445555442 2 23566778877654
No 225
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=28.17 E-value=44 Score=20.04 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=28.0
Q ss_pred HHHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHH
Q 030674 97 RLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAA 132 (173)
Q Consensus 97 ~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~ 132 (173)
..+|+..|..++.+..--|..||....|-|..|+..
T Consensus 28 ~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~ 63 (74)
T 4eef_G 28 NIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKK 63 (74)
T ss_dssp HHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHG
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHH
Confidence 467777777776654446999999999999998865
No 226
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=26.78 E-value=64 Score=21.88 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHh
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRT 160 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~ 160 (173)
++...+..+..++...|...++.+|+.+|+.-++++
T Consensus 51 l~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 51 ITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 455566778888888888888999999999988765
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=26.75 E-value=36 Score=25.91 Aligned_cols=51 Identities=20% Similarity=0.373 Sum_probs=26.6
Q ss_pred HcCCe--EEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeC
Q 030674 11 ENAPA--IIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATN 67 (173)
Q Consensus 11 ~~~P~--il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn 67 (173)
.+.+. +|+||.+..+.... . .... ...+..+...|..+....++.||+++.
T Consensus 177 ~~~~~~~lVVID~l~~l~~~~--~--~~~r--~~~i~~~~~~Lk~lAk~~~i~vi~lsq 229 (315)
T 3bh0_A 177 KNPGKRVIVMIDYLQLLEPAK--A--NDSR--TNQISQISRDLKKMARELDVVVIALSQ 229 (315)
T ss_dssp TSSSCCEEEEEECGGGSBCSC--T--TSCH--HHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred hcCCCCeEEEEeCchhcCCCC--C--CCCH--HHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 34566 99999999986421 1 1111 122333333333333334666777655
No 228
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.44 E-value=38 Score=17.62 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHHHHH
Q 030674 121 RPDKISAAEIAAICQE 136 (173)
Q Consensus 121 ~t~g~s~~di~~l~~~ 136 (173)
..+||||.++..+-.+
T Consensus 13 kkegfspeelaalese 28 (48)
T 1g6u_A 13 KKEGFSPEELAALESE 28 (48)
T ss_dssp HHTTCSHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHH
Confidence 4589999999887544
No 229
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.15 E-value=2.2e+02 Score=21.96 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=26.5
Q ss_pred cCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCC
Q 030674 12 NAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRAD 70 (173)
Q Consensus 12 ~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~ 70 (173)
..|.++++||-= .+-+......+..++..+ ... +..||.+|++++
T Consensus 302 ~~p~~lllDEpt----------~~LD~~~~~~~~~~l~~l---~~~-g~tvi~itH~~~ 346 (365)
T 3qf7_A 302 GRLDAFFIDEGF----------SSLDTENKEKIASVLKEL---ERL-NKVIVFITHDRE 346 (365)
T ss_dssp TTCCEEEEESCC----------TTSCHHHHHHHHHHHHGG---GGS-SSEEEEEESCHH
T ss_pred CCCCEEEEeCCC----------ccCCHHHHHHHHHHHHHH---HhC-CCEEEEEecchH
Confidence 579999999933 344444344444455544 333 456777777654
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=25.90 E-value=29 Score=28.28 Aligned_cols=19 Identities=11% Similarity=0.287 Sum_probs=14.9
Q ss_pred HHHcCCeEEEEcccccccc
Q 030674 9 AKENAPAIIFIDEVDAIAT 27 (173)
Q Consensus 9 A~~~~P~il~ide~d~l~~ 27 (173)
.+.+.|.+|+||-+..+..
T Consensus 350 ~~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 350 RSGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HHTTCCSEEEEECTTCCCS
T ss_pred HHhcCCCEEEEccchhcCC
Confidence 3456799999999998753
No 231
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.53 E-value=87 Score=22.36 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHHHc----CCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCCccccCC
Q 030674 4 DVFRLAKEN----APAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRP 79 (173)
Q Consensus 4 ~if~~A~~~----~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~ 79 (173)
..++.|+.. ..-+|++||+=....-. --. ...++..+. ....+.-||.|+|. .|+.|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g----~l~-------~~ev~~~l~--~Rp~~~~vIlTGr~---ap~~l~e- 169 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYD----YLP-------LEEVISALN--ARPGHQTVIITGRG---CHRDILD- 169 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTT----SSC-------HHHHHHHHH--TSCTTCEEEEECSS---CCHHHHH-
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCC----CCC-------HHHHHHHHH--hCcCCCEEEEECCC---CcHHHHH-
Confidence 345555543 36799999985432211 001 123444554 23335678889885 4777777
Q ss_pred CCccceecCC
Q 030674 80 GRLDRKIEFP 89 (173)
Q Consensus 80 grf~~~i~~~ 89 (173)
..|.+-++.
T Consensus 170 -~AD~VTem~ 178 (196)
T 1g5t_A 170 -LADTVSELR 178 (196)
T ss_dssp -HCSEEEECC
T ss_pred -hCcceeeec
Confidence 777766654
No 232
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=25.19 E-value=1.9e+02 Score=21.93 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.||++||-= .+-+......+...+..+. . +..+|.+|++++.+
T Consensus 201 iARAL~~~p~iLlLDEPt----------s~LD~~~~~~i~~~l~~l~---~--~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 201 IARTILKAPGIILLDEAT----------SALDTSNERAIQASLAKVC---A--NRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHHHHHCCSEEEEECCS----------SCCCHHHHHHHHHHHHHHH---T--TSEEEEECCSHHHH
T ss_pred HHHHHHhCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHc---C--CCEEEEEEcChHHH
Confidence 444455679999999944 2333333344444444442 1 23466677765543
No 233
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=24.84 E-value=90 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEE--EeCCCCCCCcccc
Q 030674 2 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIM--ATNRADTLDPALL 77 (173)
Q Consensus 2 l~~if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~--ttn~~~~ld~al~ 77 (173)
|++++..- ..+|-+|++|.++.-. ..++.+++.....-....+|+.|. |.|.|...|.-+.
T Consensus 12 l~RLLsLr-e~SPltLvLDSLeQsA--------------~pLi~E~i~rak~~~~k~~IIyvSFETl~kP~~ad~FI~ 74 (270)
T 4a8j_B 12 LKRILSLT-ESSPFILCLDSIAQTS--------------YKLIQEFVHQSKSKGNEYPIVYISFETVNKPSYCTQFID 74 (270)
T ss_dssp HHHHHTTC-SCCSEEEEEEBTTBCS--------------HHHHHHHHHHHHHTSCCCCEEEEESSCCSCCTTCSEEEE
T ss_pred HHHHhccc-CCCCeEEEeecccccC--------------hHHHHHHHHHHhhccCCCcEEEEEeecccCCCCCCeeeE
Confidence 34444443 4489999999987321 256666666544111333566655 6677776765444
No 234
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=24.12 E-value=1e+02 Score=27.51 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=30.0
Q ss_pred HcCCeEEEEcccccccccccCCCCCCchH-HHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 11 ENAPAIIFIDEVDAIATARFDAQTGADRE-VQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 11 ~~~P~il~ide~d~l~~~~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
...|++|++||.-+ +.+.. ...+...++..+. ...+..+|++|++.+...
T Consensus 750 a~~p~LlLLDEP~~----------GlD~~~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 750 ATSQSLVILDELGR----------GTSTHDGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp CCTTCEEEEESTTT----------TSCHHHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGG
T ss_pred ccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHH
Confidence 45799999999542 22332 2244445666552 123567888898866544
No 235
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=23.85 E-value=1.4e+02 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+|+ .+..++..|...|.+.+...|+.+++.-|+-...
T Consensus 82 ~s~-~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 82 LSP-RSKQILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp ECH-HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCH-HHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 444 5888889999999888888899999999886543
No 236
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=23.83 E-value=1.2e+02 Score=25.47 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|-++++|| +..+-+......+..++..+. ...+..||++|++.+.+
T Consensus 481 ~iAraL~~~p~lLlLDE----------Pt~~LD~~~~~~l~~~l~~l~---~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHLM---EKNEKTALVVEHDVLMI 535 (607)
T ss_dssp HHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHHH---HHTTCEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEeC----------CccCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 34455566799999999 333444444455555555541 22245577788876544
No 237
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.57 E-value=36 Score=27.32 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.0
Q ss_pred HHcCCeEEEEcccccccc
Q 030674 10 KENAPAIIFIDEVDAIAT 27 (173)
Q Consensus 10 ~~~~P~il~ide~d~l~~ 27 (173)
+.+.|.+|+||.+..+..
T Consensus 307 ~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHSCCCEEEEECGGGCBC
T ss_pred HHcCCCEEEEcChhhcCC
Confidence 356799999999999874
No 238
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1
Probab=23.34 E-value=92 Score=19.65 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=23.2
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCCcCCHHHHhcCC--CCCCHHHHHHHHH
Q 030674 84 RKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRP--DKISAAEIAAICQ 135 (173)
Q Consensus 84 ~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~~~~la~~t--~g~s~~di~~l~~ 135 (173)
..+..|.|+.++-++-|+.++..-.-.+...++-+|+.. +.+....++.++.
T Consensus 34 W~l~AP~PT~~eL~~wwee~q~np~yepP~q~~~laqels~eklarkqleeln~ 87 (110)
T 2hg7_A 34 WNLRAPLPTQAELETWWEELQKNPPYEPPDQVELLAQELSQEKLARKQLEELNK 87 (110)
T ss_dssp ECSSSCCCCHHHHHHHHHHHHHSCCCC---------------------------
T ss_pred hccCCCCCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999887666555566566543 3344444444433
No 239
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=23.23 E-value=77 Score=20.79 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=29.0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHH
Q 030674 116 EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKG 157 (173)
Q Consensus 116 ~~la~~t~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~a 157 (173)
-.+|+ ..|-|++.++.-++.|...|+.++....-.+-|-..
T Consensus 52 p~IA~-k~~TT~s~VEraIR~aIe~aw~~g~~~~l~~ifg~t 92 (120)
T 1fc3_A 52 PDIAK-KYNTTASRVERAIRHAIEVAWSRGNLESISSLFGYT 92 (120)
T ss_dssp HHHHH-HHTSCHHHHHHHHHHHHHHHHHSSCTTTTHHHHCHH
T ss_pred HHHHH-HhCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Confidence 34443 467899999999999999999987544433444333
No 240
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=22.98 E-value=64 Score=20.52 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCCcCCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 109 LSDEVDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 109 ~~~~~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
...++++..+...+.|++.+||+.+.-.|..
T Consensus 8 ~~~~~E~~p~~~l~~~l~~sdlE~LtV~AIr 38 (102)
T 1rfy_A 8 VTKKVELRPLIGLTRGLPPTDLETITIDAIR 38 (102)
T ss_dssp --CCCSSTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccchhccccchhhhcCCCHHHHHHHHHHHHH
Confidence 3456677788888999999999999887753
No 241
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=22.89 E-value=2.4e+02 Score=23.53 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|.|+++||.= .+-+......+...+..+. . +..+|..|++++.+
T Consensus 502 iAral~~~p~illlDEpt----------s~LD~~~~~~i~~~l~~~~---~--~~t~i~itH~l~~~ 553 (598)
T 3qf4_B 502 ITRAFLANPKILILDEAT----------SNVDTKTEKSIQAAMWKLM---E--GKTSIIIAHRLNTI 553 (598)
T ss_dssp HHHHHHTCCSEEEECCCC----------TTCCHHHHHHHHHHHHHHH---T--TSEEEEESCCTTHH
T ss_pred HHHHHhcCCCEEEEECCc----------cCCCHHHHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 344555679999999943 2333333344444444442 1 34577788877654
No 242
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.61 E-value=64 Score=23.44 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.8
Q ss_pred HHHHHHcCCeEEEEccccc
Q 030674 6 FRLAKENAPAIIFIDEVDA 24 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~ 24 (173)
+..|-...|.++++||--+
T Consensus 150 lAral~~~p~lllLDEPts 168 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATA 168 (243)
T ss_dssp HHHHHHHCCSEEEEECCSC
T ss_pred HHHHHhcCCCEEEEECCcc
Confidence 4445566799999999554
No 243
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=22.56 E-value=96 Score=24.60 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.+|++||-=+ +-+......+..++. .+.. +..+|.+|++.+.+
T Consensus 165 alARAL~~~P~lLLLDEPts----------~LD~~~~~~l~~~l~---~~~~--~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSA----------HLDPVTYQIIRRTLK---QAFA--DCTVILCEARIEAM 217 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHH----------HSCHHHHHHHHHHHH---TTTT--TSCEEEECSSSGGG
T ss_pred HHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHH---HHhC--CCEEEEEEcCHHHH
Confidence 34555567899999998432 222222233333333 3322 35577778776544
No 244
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.39 E-value=1.3e+02 Score=25.38 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=31.1
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 73 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld 73 (173)
+..|-...|-++++||-= .+-+......+..++..+. .. +..||.+|++.+.+.
T Consensus 232 iAraL~~~p~llllDEPt----------s~LD~~~~~~l~~~l~~l~---~~-g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPS----------SYLDVKQRLNAAQIIRSLL---AP-TKYVICVEHDLSVLD 285 (608)
T ss_dssp HHHHHHSCCSEEEEECTT----------TTCCHHHHHHHHHHHHGGG---TT-TCEEEEECSCHHHHH
T ss_pred HHHHHHhCCCEEEEECcc----------cCCCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHH
Confidence 344456779999999933 3334433444455555553 22 345777777665443
No 245
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=22.33 E-value=1.9e+02 Score=23.91 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=30.8
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.+|++||= ..+-+......+..++..+. .. +..||.+|++.+.+
T Consensus 168 ~iAraL~~~P~lLlLDEP----------Ts~LD~~~~~~l~~~L~~l~---~~-g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEP----------SSYLDIRQRLNAARAIRRLS---EE-GKSVLVVEHDLAVL 221 (538)
T ss_dssp HHHHHHHSCCSEEEEEST----------TTTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHHhcCCCEEEEECC----------cccCCHHHHHHHHHHHHHHH---hc-CCEEEEEeCCHHHH
Confidence 344555678999999993 33444443444444555442 22 45566777765433
No 246
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=22.32 E-value=77 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCeEEEEcc
Q 030674 4 DVFRLAKENAPAIIFIDE 21 (173)
Q Consensus 4 ~if~~A~~~~P~il~ide 21 (173)
.+.+..+...|.+|++|-
T Consensus 38 ~a~~~l~~~~~dlvi~d~ 55 (140)
T 2qr3_A 38 SLSTVLREENPEVVLLDM 55 (140)
T ss_dssp HHHHHHHHSCEEEEEEET
T ss_pred HHHHHHHcCCCCEEEEeC
Confidence 455666677788999874
No 247
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=22.26 E-value=1.1e+02 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 6 FRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 6 f~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
+..|-...|-||++|| +..+-+......+..++..+. ...+..||.+|++.+.+
T Consensus 478 iAraL~~~p~lLlLDE----------PT~gLD~~~~~~i~~ll~~l~---~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 478 IVLALGIPADIYLIDE----------PSAYLDSEQRIICSKVIRRFI---LHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp HHHHTTSCCSEEEECC----------TTTTCCHHHHHHHHHHHHHHH---HHHTCEEEEECSCHHHH
T ss_pred HHHHHHhCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHH
Confidence 3444456799999999 333444444444444544431 12245577788776543
No 248
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=22.24 E-value=2.2e+02 Score=20.30 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHh-ccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQ-MDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|.++++||--+ +-+.... ..+.+. +..+.. +..+|.+|++++.+
T Consensus 140 ~lAral~~~p~lllLDEPts----------~LD~~~~---~~i~~~l~~~~~~--~~tvi~vtH~~~~~ 193 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFG----------YLDVLTE---KEIFESCVCKLMA--NKTRILVTSKMEHL 193 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTT----------TSCHHHH---HHHHHHCCCCCTT--TSEEEEECCCHHHH
T ss_pred HHHHHHhcCCCEEEEECccc----------CCCHHHH---HHHHHHHHHHhhC--CCEEEEEcCChHHH
Confidence 34455567799999999442 3333222 234443 344332 45677778765543
No 249
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=22.24 E-value=63 Score=20.57 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCCcCCHHHHhcCCCCCCHHHHHHHHHHHHH
Q 030674 109 LSDEVDLEDYVSRPDKISAAEIAAICQEAGM 139 (173)
Q Consensus 109 ~~~~~~~~~la~~t~g~s~~di~~l~~~a~~ 139 (173)
...++++..+...+.|++.+||+.+.-.|..
T Consensus 8 ~~~~~E~~p~~~l~~~l~~sdlE~LtV~AIr 38 (102)
T 2hjd_A 8 VSDTFELRPVIGLTRGLSSADIETLTANAIR 38 (102)
T ss_dssp ----CCSTHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccchhccccchhhhcCCCHHHHHHHHHHHHH
Confidence 3455677788888999999999999887753
No 250
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=22.12 E-value=1.4e+02 Score=19.56 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCccCHHHHHHHHH
Q 030674 137 AGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 137 a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
|...|...++..|+.+|+..|++
T Consensus 64 Agn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 64 AVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHhhcCCceEcHHHHHHHHh
Confidence 33334344567899999999986
No 251
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=22.09 E-value=1.4e+02 Score=19.32 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 123 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+.||.. ...++..|...|.+.+...|+.+++.-++-..
T Consensus 4 ~~~t~~-~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 4 DRLTNK-FQLALADAQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CCBCHH-HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhhHH-HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcC
Confidence 345554 45566789999989888889999998888543
No 252
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=21.89 E-value=1.9e+02 Score=24.39 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=31.2
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
.+..|-...|-+|++||-= .+-+......+..++..+. .. +..||.+|++.+.+
T Consensus 238 aIAraL~~~P~lLlLDEPT----------s~LD~~~~~~l~~~L~~l~---~~-g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPS----------SYLDIRQRLKVARVIRRLA---NE-GKAVLVVEHDLAVL 291 (607)
T ss_dssp HHHHHHHSCCSEEEEECTT----------TTCCHHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHH
T ss_pred HHHHHHhcCCCEEEEECCc----------ccCCHHHHHHHHHHHHHHH---hc-CCEEEEEecChHHH
Confidence 3445556789999999933 3344444444445555542 12 45577777765543
No 253
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=21.77 E-value=1.6e+02 Score=19.28 Aligned_cols=37 Identities=5% Similarity=-0.062 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhhC
Q 030674 125 ISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNV 162 (173)
Q Consensus 125 ~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~~ 162 (173)
+| ..+..++..|...|.+.+...|+.+++.-|+-.-.
T Consensus 82 ~s-~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 82 FT-PRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp BC-HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 44 46788889999899888888899999998886543
No 254
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=21.66 E-value=1.3e+02 Score=24.94 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHHcCCeEEEEcccccccccccCCCCCCchHHHHHHHHHHHhccCCCCCCCeEEEEEeCCCCCC
Q 030674 5 VFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTL 72 (173)
Q Consensus 5 if~~A~~~~P~il~ide~d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l 72 (173)
++..|-...|-+|++|| +..+-+......+..++..+ ....+..||++|++.+.+
T Consensus 411 ~lAraL~~~p~lLlLDE----------Pt~~LD~~~~~~i~~~l~~l---~~~~g~tvi~vsHd~~~~ 465 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDE----------PSAYLDVEQRLAVSRAIRHL---MEKNEKTALVVEHDVLMI 465 (538)
T ss_dssp HHHHHHTSCCSEEEEEC----------TTTTCCHHHHHHHHHHHHHH---HHHHTCEEEEECSCHHHH
T ss_pred HHHHHHHhCCCEEEEeC----------CcccCCHHHHHHHHHHHHHH---HHhCCCEEEEEeCCHHHH
Confidence 34455566799999999 33444454444555555544 112245577788776544
No 255
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=21.39 E-value=61 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.6
Q ss_pred CeEEEEcccccccc
Q 030674 14 PAIIFIDEVDAIAT 27 (173)
Q Consensus 14 P~il~ide~d~l~~ 27 (173)
-.+|+|||+|.+..
T Consensus 236 l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 236 IKVFVLDEADVMIA 249 (300)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ceEEEEeCHHHHhh
Confidence 36899999999873
No 256
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=21.32 E-value=1.4e+02 Score=19.54 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCccCHHHHHHHHH
Q 030674 137 AGMHAVRKNRYVILPKDFEKGYR 159 (173)
Q Consensus 137 a~~~a~~~~~~~i~~~d~~~al~ 159 (173)
|...|...++..|+.+|+..|++
T Consensus 65 Agn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 65 AGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHhcCCccccHHHHHHHHh
Confidence 33334344567899999999986
No 257
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.32 E-value=83 Score=18.62 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=23.1
Q ss_pred HHHHHHHccCCCCCcCCHHHHhcCCCCCCHHHHHHH
Q 030674 98 LVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAI 133 (173)
Q Consensus 98 ~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~l 133 (173)
++++.|+...+.-.+-|+..|+.++. ++..++..-
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~ksk-ms~qqvkdw 53 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASR-LSTQQVLDW 53 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTT-CCHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhC-CCHHHHHHH
Confidence 45665555555555568888888765 777777653
No 258
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=20.84 E-value=1.4e+02 Score=19.49 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHhh
Q 030674 123 DKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTN 161 (173)
Q Consensus 123 ~g~s~~di~~l~~~a~~~a~~~~~~~i~~~d~~~al~~~ 161 (173)
+.||.. ...++..|...|.+.+...|+.+++..++-..
T Consensus 4 ~~~t~~-~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (150)
T 2y1q_A 4 GRFTER-AQKVLALAQEEALRLGHNNIGTEHILLGLVRE 41 (150)
T ss_dssp CCBCHH-HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhCHH-HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhC
Confidence 345554 45566788889999888889999999888554
No 259
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=20.59 E-value=54 Score=24.87 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=9.5
Q ss_pred CCeEEEEcccccc
Q 030674 13 APAIIFIDEVDAI 25 (173)
Q Consensus 13 ~P~il~ide~d~l 25 (173)
.+.+|+|||++..
T Consensus 214 ~~~lLiiDdig~~ 226 (308)
T 2qgz_A 214 NVPVLILDDIGAE 226 (308)
T ss_dssp TSSEEEEETCCC-
T ss_pred CCCEEEEcCCCCC
Confidence 3569999999654
No 260
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=20.49 E-value=1.3e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=-0.042 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccCHHHHHHHH
Q 030674 129 EIAAICQEAGMHAVRKNRYVILPKDFEKGY 158 (173)
Q Consensus 129 di~~l~~~a~~~a~~~~~~~i~~~d~~~al 158 (173)
....++..|...|.+.+...|+.+++..++
T Consensus 5 ~~~~~l~~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 5 ELELSLNMAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp HHHHHHHHHHHHHHHHTBSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 345666778888888877777777777776
No 261
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=20.23 E-value=79 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.4
Q ss_pred Hc-CCeEEEEccccccccc
Q 030674 11 EN-APAIIFIDEVDAIATA 28 (173)
Q Consensus 11 ~~-~P~il~ide~d~l~~~ 28 (173)
.+ .+.+|+||.+..+...
T Consensus 153 ~~gg~~lIVIDyLqlm~~~ 171 (338)
T 4a1f_A 153 QHKELGIAFIDYLQLMSGS 171 (338)
T ss_dssp HCTTEEEEEEEEEECCCTH
T ss_pred hcCCCCEEEEechHHhcCC
Confidence 44 6899999999988653
No 262
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=20.10 E-value=50 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=15.3
Q ss_pred HHHHHcCCeEEEEccccccc
Q 030674 7 RLAKENAPAIIFIDEVDAIA 26 (173)
Q Consensus 7 ~~A~~~~P~il~ide~d~l~ 26 (173)
++|+.+.|.||++|+-..+.
T Consensus 96 ~E~~~~~P~vV~vd~~N~i~ 115 (139)
T 2c45_A 96 ARARTYQPRIVFVDAYNKPI 115 (139)
T ss_dssp HHHHSCCCEEEECCTTCC--
T ss_pred HHhccCCCeEEEECCCCCEE
Confidence 56788999999999966554
Done!