BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030675
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 18 DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
DG + Y G++ + + W E+ + L G ++ +NN + + D
Sbjct: 30 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 89
Query: 69 SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
L V EG T L + +G ++ V ++ G +YFT ST + +
Sbjct: 90 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 149
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
+ + G L+KYDPST +T+L+L L+ G +S D F++V E
Sbjct: 150 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 194
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 18 DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
DG + Y G++ + + W E+ + L G ++ +NN + + D
Sbjct: 39 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98
Query: 69 SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
L V EG T L + +G ++ V ++ G +YFT ST + +
Sbjct: 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
+ + G L+KYDPST +T+L+L L+ G +S D F++V E
Sbjct: 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 203
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 18 DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLGLTT----TKENNVIIVCD 68
DG Y G++ + + W E+ + L G T +NN + D
Sbjct: 39 DGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQXYIVD 98
Query: 69 SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
L V EG T L + +G ++ V ++ G +YFT ST +
Sbjct: 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIX 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
+ + G L KYDPST +T+L+ L+ G +S D F++V E
Sbjct: 159 DTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAE 203
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 83 VLVSQFNGSQLRFANDVIEASDGSLYFT------VSSTKFTPAEYYLDLVSGEPHGVLLK 136
+LV ++ G +L ND+I A DG+++FT ++ PA+ L H + +
Sbjct: 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA------HHSVYR 173
Query: 137 YDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
P + + D L NG+A S DE+ L V ++
Sbjct: 174 LPPDGSPLQRMAD-LDHPNGLAFSPDEQTLYVSQT 207
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 180
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 178
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 73 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 132
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F +G+A+
Sbjct: 133 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVR 178
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ N+ +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 180
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ ND +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F +G+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVR 180
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F NG+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPNGIAVR 180
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F +G+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVR 180
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 54 GLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN--GSQLRFANDVIEASDGSLYFTV 111
G ++ N + V D + GLL V +G +++ + G +++ +D +G+L+ T
Sbjct: 75 GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCAFDYEGNLWITA 134
Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160
+ + PA+Y + E G + + + Q V F +G+A+
Sbjct: 135 PAGEVAPADYTRSMQ--EKFGSIYCFT-TDGQMIQVDTAFQFPDGIAVR 180
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 535 FKKKNPDGSWEDWVMAAYQDRVSLSTT 561
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 534 FKKKNPDGSWEDWVMAAYQDRVSLSTT 560
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1104 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1130
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1103 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1129
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 32 IKRMHPNGTWEDWHQVGSQSLLGLTTT 58
K+ +P+G+WEDW Q + L+TT
Sbjct: 1104 FKKKNPDGSWEDWVMAAYQDRVSLSTT 1130
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156
ND++ S G YFT S P G + P + ++ + ANG
Sbjct: 138 NDMVFDSKGGFYFTD-----------FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 157 VALSEDERFLVVCES 171
+ALS DE+ L V E+
Sbjct: 187 IALSTDEKVLWVTET 201
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 67 CDSQQGLLKVSEEGVTVLVSQ-------------FNGSQLRFANDVIEASDGSLYFT 110
C ++QG L G+ L Q F G +L NDV A DGSL+F+
Sbjct: 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 15 VSVDGNGVLYTATGDGWIKRM------HPNGTWEDWHQVGSQSLLGLTTT 58
VS D NG A +KR+ +P+G+WEDW + L+ T
Sbjct: 1082 VSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSAT 1131
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 15 VSVDGNGVLYTATGDGWIKRM------HPNGTWEDWHQVGSQSLLGLTTT 58
VS D NG A +KR+ +P+G+WEDW + L+ T
Sbjct: 1082 VSADLNGQAVYAACQTILKRLEPYKKKNPSGSWEDWVTAAYMDTVSLSAT 1131
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156
+D++ S G YFT S P G + P + ++ + ANG
Sbjct: 138 DDMVFDSKGGFYFTD-----------FRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANG 186
Query: 157 VALSEDERFLVVCES 171
+ALS DE+ L V E+
Sbjct: 187 IALSTDEKVLWVTET 201
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 121 YYLDL--VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
Y+ D S P G + P + ++ + ANG+ALS DE+ L V E+
Sbjct: 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201
>pdb|3PBI|A Chain A, Structure Of The Peptidoglycan Hydrolase Ripb (Rv1478)
From Mycobacterium Tuberculosis At 1.6 Resolution
Length = 214
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDV--IEASDG 105
G SL G + ++ V GL++ + GV VL+ +F+G Q V EA G
Sbjct: 103 GGGSLQGPSKGVDSGANTVGFDCSGLVRYAFAGVGVLIPRFSGDQYNAGRHVPPAEAKRG 162
Query: 106 SLYF 109
L F
Sbjct: 163 DLIF 166
>pdb|2P2R|A Chain A, Crystal Structure Of The Third Kh Domain Of Human Poly(C)-
Binding Protein-2 In Complex With C-Rich Strand Of Human
Telomeric Dna
Length = 76
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125
+ Q +G+Q++ AN V ++D + T S+ + A+Y +++
Sbjct: 30 IRQXSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 70
>pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding
Protein
Length = 82
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 53 LGLTTTKE----NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLY 108
LG TT E NN+I +QG ++E + Q +G+Q++ AN V +S +
Sbjct: 2 LGSQTTHELTIPNNLIGCIIGRQGA-NINE------IRQMSGAQIKIANPVEGSSGRQVT 54
Query: 109 FTVSSTKFTPAEYYLD 124
T S+ + A+Y ++
Sbjct: 55 ITGSAASISLAQYLIN 70
>pdb|2B4A|A Chain A, Crystal Structure Of A Response Regulator Receiver Domain
Protein (Bh3024) From Bacillus Halodurans C-125 At 2.42
A Resolution
Length = 138
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 58 TKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDG 105
TK+ +V+I+ + L++ SE ++ L F S+LR A D + S G
Sbjct: 86 TKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPSMG 133
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MIKLGEGIVNHPEDVSVDGNGVL-YTATGD----GWIKRMHPNGTWEDWHQVGSQ 50
M+ L G+ PE +DGNG++ Y GD W + + P WE + + +Q
Sbjct: 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP--LWEKYSKEAAQ 185
>pdb|3MRU|A Chain A, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
pdb|3MRU|B Chain B, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
Length = 490
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--PNGTW---EDWHQVGSQSL-LGLT 56
K+ IV E+V+ D V A +I ++ PNG ++ V SL +G+
Sbjct: 297 KIETDIVTFNEEVATDAQ-VFAIADQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVI 355
Query: 57 TTKENNVIIVC------DSQQGLLKVSEEGVTVLVSQFNGSQLRFA 96
TT+EN V ++C DS + + EG+ V++ G+Q+ F+
Sbjct: 356 TTEENKVTVLCLIRSLIDSGRSQV----EGMLQSVAELAGAQIEFS 397
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MIKLGEGIVNHPEDVSVDGNGVL-YTATGD----GWIKRMHPNGTWEDWHQVGSQ 50
M+ L G+ PE +DGNG++ Y GD W + + P WE + + +Q
Sbjct: 116 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP--LWEKYSKEAAQ 168
>pdb|3HMW|H Chain H, Crystal Structure Of Ustekinumab Fab
pdb|3HMX|H Chain H, Crystal Structure Of Ustekinumab FabIL-12 Complex
Length = 226
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 24/112 (21%)
Query: 15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLL 74
+S G+G +T GW+++M G DW +G+ + +++ I S QG +
Sbjct: 20 ISCKGSGYSFTTYWLGWVRQMPGKGL--DW--------IGIMSPVDSD-IRYSPSFQGQV 68
Query: 75 KVS-EEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125
+S ++ +T Q+N ++ASD ++Y+ + P + Y D
Sbjct: 69 TMSVDKSITTAYLQWNS---------LKASDTAMYYCA---RRRPGQGYFDF 108
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MIKLGEGIVNHPEDVSVDGNGVL-YTATGD----GWIKRMHPNGTWEDWHQVGSQ 50
M+ L G+ PE +DGNG++ Y GD W + + P WE + + +Q
Sbjct: 91 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP--LWEKYSKEAAQ 143
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MIKLGEGIVNHPEDVSVDGNGVL-YTATGD----GWIKRMHPNGTWEDWHQVGSQ 50
M+ L G+ PE +DGNG++ Y GD W + + P WE + + +Q
Sbjct: 77 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKP--LWEKYSKEAAQ 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,716,842
Number of Sequences: 62578
Number of extensions: 240496
Number of successful extensions: 485
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 51
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)