Query 030675
Match_columns 173
No_of_seqs 116 out of 1084
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08450 SGL: SMP-30/Gluconola 99.9 2.9E-22 6.3E-27 147.6 17.6 148 12-173 2-155 (246)
2 KOG1520 Predicted alkaloid syn 99.9 4.2E-22 9.1E-27 150.0 14.3 125 46-172 112-239 (376)
3 COG3386 Gluconolactonase [Carb 99.9 2.1E-21 4.5E-26 146.1 17.2 156 9-172 24-183 (307)
4 PF08450 SGL: SMP-30/Gluconola 99.8 4.3E-18 9.3E-23 125.4 17.1 144 8-171 84-245 (246)
5 PF03088 Str_synth: Strictosid 99.8 1.1E-18 2.4E-23 107.5 6.8 77 97-173 1-78 (89)
6 TIGR02604 Piru_Ver_Nterm putat 99.7 3E-16 6.6E-21 121.8 18.3 165 2-171 5-202 (367)
7 COG3386 Gluconolactonase [Carb 99.7 2.8E-15 6E-20 113.1 18.2 146 7-171 108-275 (307)
8 PLN02919 haloacid dehalogenase 99.7 3.2E-15 6.9E-20 128.8 18.9 149 6-172 564-760 (1057)
9 PLN02919 haloacid dehalogenase 99.6 1.5E-13 3.2E-18 118.7 19.4 145 9-172 682-878 (1057)
10 COG4257 Vgb Streptogramin lyas 99.6 2.7E-13 5.8E-18 98.6 14.1 139 10-170 62-206 (353)
11 TIGR03606 non_repeat_PQQ dehyd 99.5 6.4E-12 1.4E-16 99.0 19.4 170 1-173 22-250 (454)
12 PF10282 Lactonase: Lactonase, 99.5 8.7E-12 1.9E-16 96.2 18.2 147 9-171 143-311 (345)
13 PF07995 GSDH: Glucose / Sorbo 99.5 3.5E-12 7.6E-17 97.8 14.9 158 9-172 1-201 (331)
14 PF10282 Lactonase: Lactonase, 99.4 1E-10 2.2E-15 90.3 18.3 146 10-172 87-265 (345)
15 PRK11028 6-phosphogluconolacto 99.3 4.4E-10 9.6E-15 86.1 17.7 142 10-171 35-194 (330)
16 PRK11028 6-phosphogluconolacto 99.3 3.2E-10 7E-15 86.9 16.5 144 10-171 80-247 (330)
17 KOG4499 Ca2+-binding protein R 99.2 1E-09 2.2E-14 78.5 14.9 138 15-170 114-273 (310)
18 COG2706 3-carboxymuconate cycl 99.2 2.8E-09 6E-14 80.1 16.9 146 10-172 89-264 (346)
19 COG3391 Uncharacterized conser 99.2 4.1E-09 8.9E-14 82.5 18.0 144 11-171 117-272 (381)
20 COG4257 Vgb Streptogramin lyas 99.2 1.6E-09 3.5E-14 79.2 14.3 143 8-172 187-337 (353)
21 COG2706 3-carboxymuconate cycl 99.2 8.1E-09 1.8E-13 77.6 17.0 143 12-170 147-309 (346)
22 KOG4659 Uncharacterized conser 99.1 6.8E-09 1.5E-13 88.6 16.2 140 9-172 406-612 (1899)
23 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 4.2E-08 9.1E-13 73.3 18.7 140 10-169 31-174 (300)
24 COG3391 Uncharacterized conser 99.1 2.7E-08 5.9E-13 77.9 18.0 142 10-172 74-227 (381)
25 COG2133 Glucose/sorbosone dehy 99.0 3.1E-08 6.7E-13 76.9 14.4 166 2-173 60-260 (399)
26 PF02239 Cytochrom_D1: Cytochr 99.0 4.5E-08 9.8E-13 76.3 15.0 142 12-170 39-190 (369)
27 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 2.2E-07 4.8E-12 69.4 17.7 127 21-170 1-133 (300)
28 TIGR02604 Piru_Ver_Nterm putat 98.9 2.6E-08 5.7E-13 77.6 11.9 102 2-113 65-203 (367)
29 KOG1520 Predicted alkaloid syn 98.9 4.8E-08 1E-12 74.6 12.2 137 8-169 113-281 (376)
30 KOG1214 Nidogen and related ba 98.9 5.6E-08 1.2E-12 80.2 12.3 143 10-172 1025-1176(1289)
31 KOG4659 Uncharacterized conser 98.9 1.4E-07 3.1E-12 80.9 14.9 156 8-172 473-681 (1899)
32 PF06977 SdiA-regulated: SdiA- 98.8 4E-07 8.6E-12 67.0 15.4 62 5-68 17-82 (248)
33 KOG1214 Nidogen and related ba 98.8 7E-08 1.5E-12 79.6 12.1 146 2-171 1060-1215(1289)
34 PF05096 Glu_cyclase_2: Glutam 98.8 1.1E-06 2.4E-11 64.6 17.0 138 10-169 90-248 (264)
35 PF05787 DUF839: Bacterial pro 98.8 1.8E-07 3.8E-12 75.8 13.0 154 5-169 345-519 (524)
36 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.3E-06 2.9E-11 67.3 16.6 108 21-146 13-142 (352)
37 COG3211 PhoX Predicted phospha 98.8 1.2E-07 2.7E-12 75.5 10.9 151 3-169 410-571 (616)
38 PRK05137 tolB translocation pr 98.7 3.5E-06 7.6E-11 67.2 18.5 139 11-170 203-352 (435)
39 PF01731 Arylesterase: Arylest 98.7 6.6E-08 1.4E-12 59.4 6.7 72 98-173 2-75 (86)
40 TIGR02658 TTQ_MADH_Hv methylam 98.7 4.9E-06 1.1E-10 64.2 18.4 103 60-171 205-319 (352)
41 PRK04792 tolB translocation pr 98.7 2.8E-06 6.1E-11 68.0 17.2 137 13-170 221-368 (448)
42 PF03088 Str_synth: Strictosid 98.7 1.9E-07 4.1E-12 57.7 8.0 67 13-80 1-88 (89)
43 KOG4499 Ca2+-binding protein R 98.7 3.3E-07 7.1E-12 65.9 10.1 149 13-172 18-178 (310)
44 PRK03629 tolB translocation pr 98.6 8.2E-06 1.8E-10 65.0 17.5 138 12-170 201-349 (429)
45 KOG0266 WD40 repeat-containing 98.6 6.6E-06 1.4E-10 66.1 17.0 140 7-170 201-353 (456)
46 PRK02889 tolB translocation pr 98.6 8.1E-06 1.8E-10 65.0 17.4 136 13-169 199-345 (427)
47 PRK04922 tolB translocation pr 98.6 7.3E-06 1.6E-10 65.3 16.3 138 12-170 206-354 (433)
48 PRK00178 tolB translocation pr 98.6 1.4E-05 3E-10 63.6 17.8 137 13-170 202-349 (430)
49 KOG0291 WD40-repeat-containing 98.5 5.8E-06 1.2E-10 67.9 14.8 138 9-168 350-495 (893)
50 KOG1446 Histone H3 (Lys4) meth 98.5 2.4E-05 5.2E-10 58.2 16.7 146 4-171 95-252 (311)
51 PRK03629 tolB translocation pr 98.5 2.4E-05 5.3E-10 62.3 17.9 136 13-170 246-392 (429)
52 PRK05137 tolB translocation pr 98.5 1.9E-05 4.1E-10 63.0 16.6 136 13-170 249-395 (435)
53 PF06977 SdiA-regulated: SdiA- 98.5 7.2E-06 1.6E-10 60.4 12.6 100 10-111 118-239 (248)
54 PRK04922 tolB translocation pr 98.5 3E-05 6.5E-10 61.9 17.1 136 13-170 251-397 (433)
55 KOG1446 Histone H3 (Lys4) meth 98.4 4.8E-05 1E-09 56.6 16.1 135 9-163 140-287 (311)
56 PRK04792 tolB translocation pr 98.4 4.6E-05 1E-09 61.1 17.0 136 13-170 265-411 (448)
57 TIGR02800 propeller_TolB tol-p 98.4 4.4E-05 9.6E-10 60.3 16.7 138 13-171 193-341 (417)
58 PRK04043 tolB translocation pr 98.4 5.7E-05 1.2E-09 60.0 17.2 135 13-170 191-337 (419)
59 PF02239 Cytochrom_D1: Cytochr 98.4 1.7E-05 3.7E-10 62.0 13.8 123 23-169 8-145 (369)
60 PRK01742 tolB translocation pr 98.3 6.2E-05 1.3E-09 60.0 16.1 93 12-110 206-309 (429)
61 KOG0315 G-protein beta subunit 98.3 7.3E-05 1.6E-09 54.4 14.6 142 12-171 127-278 (311)
62 TIGR03032 conserved hypothetic 98.3 5.4E-05 1.2E-09 57.0 14.3 136 12-171 105-260 (335)
63 PRK00178 tolB translocation pr 98.3 0.00012 2.6E-09 58.2 17.5 135 14-170 247-392 (430)
64 KOG0318 WD40 repeat stress pro 98.3 9.9E-05 2.1E-09 58.6 15.9 141 8-173 362-509 (603)
65 PRK02889 tolB translocation pr 98.3 8.5E-05 1.8E-09 59.2 15.9 126 23-169 167-301 (427)
66 cd00200 WD40 WD40 domain, foun 98.3 0.00018 4E-09 52.2 16.6 134 13-170 55-196 (289)
67 TIGR03606 non_repeat_PQQ dehyd 98.3 0.00014 3.1E-09 58.0 16.4 57 12-70 148-249 (454)
68 cd00200 WD40 WD40 domain, foun 98.3 0.00018 3.8E-09 52.3 15.9 138 10-170 136-280 (289)
69 PRK02888 nitrous-oxide reducta 98.2 0.00013 2.7E-09 59.9 15.8 158 9-171 127-340 (635)
70 PRK01742 tolB translocation pr 98.2 0.00014 3E-09 58.0 15.7 119 30-169 184-309 (429)
71 TIGR02800 propeller_TolB tol-p 98.2 0.00028 6.2E-09 55.7 17.4 138 12-171 236-384 (417)
72 KOG0318 WD40 repeat stress pro 98.2 0.00011 2.4E-09 58.3 14.4 135 10-166 406-545 (603)
73 PF03022 MRJP: Major royal jel 98.2 0.00031 6.8E-09 53.1 16.0 141 10-169 61-252 (287)
74 COG4946 Uncharacterized protei 98.1 0.00021 4.5E-09 56.5 14.6 128 24-169 375-506 (668)
75 KOG0286 G-protein beta subunit 98.1 0.00039 8.5E-09 51.7 15.2 135 11-169 147-291 (343)
76 PF08662 eIF2A: Eukaryotic tra 98.1 0.00041 8.8E-09 49.4 15.2 118 31-171 40-163 (194)
77 COG3823 Glutamine cyclotransfe 98.1 0.00014 2.9E-09 51.8 12.1 100 49-169 131-246 (262)
78 PRK02888 nitrous-oxide reducta 98.1 0.00016 3.4E-09 59.4 14.0 66 42-111 314-392 (635)
79 PRK01029 tolB translocation pr 98.1 0.00078 1.7E-08 53.8 17.5 137 13-170 234-389 (428)
80 KOG0279 G protein beta subunit 98.1 0.00039 8.6E-09 51.3 14.2 135 9-163 105-245 (315)
81 PF07433 DUF1513: Protein of u 98.1 0.0014 3E-08 49.6 16.9 97 15-113 56-182 (305)
82 PRK04043 tolB translocation pr 98.0 0.00073 1.6E-08 53.8 16.4 128 22-170 157-295 (419)
83 KOG1273 WD40 repeat protein [G 98.0 0.00063 1.4E-08 51.2 14.4 145 11-173 67-218 (405)
84 KOG0266 WD40 repeat-containing 98.0 0.0005 1.1E-08 55.3 15.3 137 10-170 160-307 (456)
85 KOG0973 Histone transcription 98.0 0.00017 3.7E-09 61.3 12.7 101 12-114 132-240 (942)
86 KOG0272 U4/U6 small nuclear ri 98.0 7.5E-05 1.6E-09 57.7 9.2 141 4-166 212-360 (459)
87 KOG0278 Serine/threonine kinas 98.0 0.00094 2E-08 48.8 14.2 133 14-169 148-284 (334)
88 PRK01029 tolB translocation pr 98.0 0.0015 3.2E-08 52.2 16.8 129 13-162 284-425 (428)
89 KOG0291 WD40-repeat-containing 97.9 0.00079 1.7E-08 55.8 14.9 94 10-110 436-538 (893)
90 PF07995 GSDH: Glucose / Sorbo 97.9 0.00021 4.6E-09 55.1 11.2 109 50-170 3-131 (331)
91 PF01436 NHL: NHL repeat; Int 97.9 2.4E-05 5.2E-10 37.6 3.8 27 9-35 1-28 (28)
92 COG3204 Uncharacterized protei 97.9 0.00053 1.1E-08 51.2 12.5 101 10-111 181-301 (316)
93 PTZ00421 coronin; Provisional 97.9 0.0041 9E-08 50.6 18.8 133 11-167 77-227 (493)
94 KOG0283 WD40 repeat-containing 97.9 0.00062 1.3E-08 56.5 13.5 141 10-169 410-564 (712)
95 KOG0293 WD40 repeat-containing 97.9 0.00069 1.5E-08 52.6 12.7 140 10-171 225-374 (519)
96 KOG0772 Uncharacterized conser 97.9 0.00046 1E-08 54.9 11.8 72 9-80 167-245 (641)
97 KOG0263 Transcription initiati 97.8 0.00035 7.7E-09 57.6 11.3 134 12-169 496-637 (707)
98 TIGR03032 conserved hypothetic 97.8 7.6E-05 1.7E-09 56.2 6.8 64 2-70 196-261 (335)
99 PF13449 Phytase-like: Esteras 97.8 0.0038 8.3E-08 48.1 16.3 102 11-113 86-234 (326)
100 COG3204 Uncharacterized protei 97.8 0.0054 1.2E-07 45.9 15.8 146 8-172 127-304 (316)
101 KOG0282 mRNA splicing factor [ 97.8 0.00019 4.2E-09 56.3 8.3 139 10-171 300-452 (503)
102 KOG1539 WD repeat protein [Gen 97.8 0.00061 1.3E-08 56.9 11.5 136 12-170 496-636 (910)
103 KOG0272 U4/U6 small nuclear ri 97.7 0.0015 3.2E-08 50.8 12.8 139 9-169 303-448 (459)
104 PF07433 DUF1513: Protein of u 97.7 0.0026 5.7E-08 48.1 13.1 108 48-171 4-118 (305)
105 KOG0973 Histone transcription 97.7 0.0018 3.8E-08 55.4 13.3 142 10-171 70-239 (942)
106 KOG0286 G-protein beta subunit 97.7 0.0076 1.6E-07 45.0 14.8 132 11-164 188-328 (343)
107 PTZ00420 coronin; Provisional 97.6 0.015 3.2E-07 48.2 18.0 114 10-145 75-202 (568)
108 KOG0279 G protein beta subunit 97.6 0.0057 1.2E-07 45.4 13.4 135 10-165 64-206 (315)
109 KOG0288 WD40 repeat protein Ti 97.6 0.0061 1.3E-07 47.4 14.0 132 21-170 312-450 (459)
110 KOG2096 WD40 repeat protein [G 97.6 0.0042 9.2E-08 47.0 12.8 143 10-169 87-246 (420)
111 KOG0263 Transcription initiati 97.6 0.00093 2E-08 55.2 10.2 105 2-113 528-639 (707)
112 COG3490 Uncharacterized protei 97.6 0.0069 1.5E-07 45.3 13.6 95 17-113 121-245 (366)
113 KOG0315 G-protein beta subunit 97.6 0.01 2.2E-07 43.5 14.0 105 6-112 164-277 (311)
114 KOG0303 Actin-binding protein 97.6 0.003 6.5E-08 48.9 11.8 93 14-110 136-233 (472)
115 PTZ00421 coronin; Provisional 97.5 0.016 3.4E-07 47.2 16.8 141 11-169 127-277 (493)
116 PF03022 MRJP: Major royal jel 97.5 0.0018 4E-08 48.9 10.8 99 11-113 129-255 (287)
117 COG2133 Glucose/sorbosone dehy 97.5 0.0024 5.2E-08 50.2 11.6 119 3-140 233-397 (399)
118 KOG0289 mRNA splicing factor [ 97.5 0.0051 1.1E-07 48.2 12.9 136 12-169 350-494 (506)
119 KOG0293 WD40 repeat-containing 97.5 0.0024 5.1E-08 49.8 11.0 136 10-169 270-413 (519)
120 PF13360 PQQ_2: PQQ-like domai 97.5 0.019 4E-07 41.6 17.1 108 16-144 32-144 (238)
121 COG3490 Uncharacterized protei 97.5 0.0053 1.1E-07 45.9 12.1 122 34-171 53-181 (366)
122 KOG1407 WD40 repeat protein [F 97.5 0.011 2.4E-07 43.6 13.5 136 10-168 65-206 (313)
123 PF14583 Pectate_lyase22: Olig 97.5 0.0035 7.5E-08 48.9 11.7 143 16-161 42-197 (386)
124 PF13449 Phytase-like: Esteras 97.5 0.029 6.4E-07 43.2 17.2 158 7-170 17-232 (326)
125 PF01436 NHL: NHL repeat; Int 97.5 0.00027 5.8E-09 33.9 3.6 21 93-113 1-21 (28)
126 COG0823 TolB Periplasmic compo 97.5 0.0057 1.2E-07 48.8 13.0 120 30-170 218-344 (425)
127 KOG0772 Uncharacterized conser 97.4 0.0013 2.8E-08 52.5 9.0 139 9-167 268-425 (641)
128 KOG2055 WD40 repeat protein [G 97.4 0.0025 5.5E-08 50.1 10.3 138 11-170 305-454 (514)
129 KOG0289 mRNA splicing factor [ 97.4 0.01 2.2E-07 46.6 13.2 137 11-168 263-406 (506)
130 PRK11138 outer membrane biogen 97.4 0.0097 2.1E-07 46.9 13.7 99 20-144 256-357 (394)
131 KOG1274 WD40 repeat protein [G 97.4 0.013 2.8E-07 49.8 14.5 141 11-169 98-250 (933)
132 KOG0282 mRNA splicing factor [ 97.4 0.0015 3.2E-08 51.5 8.5 135 7-166 212-357 (503)
133 KOG0265 U5 snRNP-specific prot 97.3 0.0099 2.2E-07 44.5 12.0 105 14-140 52-163 (338)
134 KOG1274 WD40 repeat protein [G 97.3 0.0077 1.7E-07 51.1 12.6 125 22-168 68-205 (933)
135 COG3292 Predicted periplasmic 97.3 0.0031 6.6E-08 51.2 9.8 94 12-112 167-265 (671)
136 PF05787 DUF839: Bacterial pro 97.3 0.013 2.8E-07 48.0 13.4 79 91-170 347-453 (524)
137 KOG0640 mRNA cleavage stimulat 97.3 0.0055 1.2E-07 46.2 10.0 141 9-168 172-322 (430)
138 COG4946 Uncharacterized protei 97.3 0.025 5.4E-07 45.2 14.0 124 20-168 331-460 (668)
139 KOG2106 Uncharacterized conser 97.2 0.029 6.3E-07 45.0 14.1 133 9-166 368-506 (626)
140 smart00135 LY Low-density lipo 97.2 0.00098 2.1E-08 34.8 4.4 37 4-40 3-41 (43)
141 KOG0273 Beta-transducin family 97.2 0.037 8E-07 43.9 14.5 70 10-80 236-308 (524)
142 KOG2055 WD40 repeat protein [G 97.2 0.019 4.1E-07 45.4 12.8 140 11-169 215-362 (514)
143 KOG1407 WD40 repeat protein [F 97.2 0.016 3.6E-07 42.7 11.6 96 51-167 150-247 (313)
144 KOG2106 Uncharacterized conser 97.2 0.042 9E-07 44.1 14.5 134 11-169 331-465 (626)
145 PTZ00420 coronin; Provisional 97.1 0.093 2E-06 43.5 17.1 70 10-80 126-199 (568)
146 KOG0296 Angio-associated migra 97.1 0.074 1.6E-06 41.0 15.2 136 12-170 67-209 (399)
147 KOG0646 WD40 repeat protein [G 97.1 0.026 5.7E-07 44.5 12.9 136 13-170 85-236 (476)
148 PLN00181 protein SPA1-RELATED; 97.1 0.094 2E-06 45.3 17.7 133 12-168 486-635 (793)
149 KOG0294 WD40 repeat-containing 97.1 0.043 9.3E-07 41.6 13.4 121 28-169 61-186 (362)
150 smart00135 LY Low-density lipo 97.1 0.0012 2.6E-08 34.5 4.1 27 147-173 4-30 (43)
151 PF08662 eIF2A: Eukaryotic tra 97.1 0.023 5E-07 40.4 11.7 95 12-112 62-162 (194)
152 KOG0643 Translation initiation 97.1 0.071 1.5E-06 39.6 14.1 120 29-169 73-207 (327)
153 KOG1539 WD repeat protein [Gen 97.1 0.011 2.4E-07 49.8 10.9 140 10-171 449-596 (910)
154 KOG0278 Serine/threonine kinas 97.1 0.02 4.3E-07 42.1 10.9 94 11-110 186-284 (334)
155 TIGR03300 assembly_YfgL outer 97.0 0.041 8.8E-07 43.0 13.4 100 20-145 241-343 (377)
156 KOG2139 WD40 repeat protein [G 96.9 0.09 2E-06 40.7 13.9 94 12-112 198-300 (445)
157 KOG0273 Beta-transducin family 96.9 0.087 1.9E-06 41.9 14.0 138 11-170 361-512 (524)
158 KOG0268 Sof1-like rRNA process 96.9 0.0068 1.5E-07 46.6 7.8 153 7-169 64-246 (433)
159 PF14517 Tachylectin: Tachylec 96.9 0.055 1.2E-06 39.4 12.2 145 3-170 28-195 (229)
160 KOG2048 WD40 repeat protein [G 96.9 0.083 1.8E-06 43.7 14.3 146 10-172 383-539 (691)
161 PF08553 VID27: VID27 cytoplas 96.9 0.058 1.2E-06 46.2 13.8 140 11-169 482-636 (794)
162 KOG0645 WD40 repeat protein [G 96.8 0.12 2.7E-06 38.4 16.4 106 3-112 8-124 (312)
163 KOG0275 Conserved WD40 repeat- 96.8 0.034 7.4E-07 42.3 10.9 135 9-169 306-455 (508)
164 COG0823 TolB Periplasmic compo 96.8 0.052 1.1E-06 43.4 12.6 93 13-111 241-343 (425)
165 KOG0319 WD40-repeat-containing 96.8 0.046 1E-06 45.6 12.2 127 15-164 25-160 (775)
166 PF06433 Me-amine-dh_H: Methyl 96.8 0.16 3.4E-06 39.2 14.9 106 21-144 3-130 (342)
167 KOG0771 Prolactin regulatory e 96.8 0.097 2.1E-06 40.9 13.1 56 13-70 148-206 (398)
168 KOG2048 WD40 repeat protein [G 96.8 0.12 2.6E-06 42.8 14.2 98 10-110 70-172 (691)
169 PF00058 Ldl_recept_b: Low-den 96.7 0.0081 1.7E-07 31.6 5.3 41 105-161 1-42 (42)
170 PF14517 Tachylectin: Tachylec 96.7 0.015 3.3E-07 42.2 8.0 116 3-141 74-207 (229)
171 KOG1009 Chromatin assembly com 96.7 0.039 8.4E-07 43.0 10.3 55 8-63 122-179 (434)
172 PLN00181 protein SPA1-RELATED; 96.6 0.41 8.8E-06 41.5 17.5 138 11-169 577-726 (793)
173 KOG0310 Conserved WD40 repeat- 96.6 0.22 4.9E-06 39.7 14.3 138 9-169 153-297 (487)
174 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.6 0.18 3.9E-06 41.6 14.5 58 20-80 69-140 (527)
175 KOG0271 Notchless-like WD40 re 96.6 0.012 2.6E-07 45.6 7.1 91 50-161 117-210 (480)
176 PRK13616 lipoprotein LpqB; Pro 96.6 0.33 7E-06 40.7 16.0 100 9-110 349-465 (591)
177 KOG0296 Angio-associated migra 96.6 0.21 4.6E-06 38.6 13.6 116 11-149 108-229 (399)
178 KOG4378 Nuclear protein COP1 [ 96.5 0.04 8.7E-07 44.2 9.9 105 14-141 169-281 (673)
179 KOG2139 WD40 repeat protein [G 96.5 0.066 1.4E-06 41.4 10.6 62 94-171 196-258 (445)
180 KOG1538 Uncharacterized conser 96.5 0.1 2.2E-06 43.5 12.0 67 9-77 12-80 (1081)
181 KOG1215 Low-density lipoprotei 96.4 0.15 3.3E-06 44.6 13.9 143 5-171 476-628 (877)
182 KOG2096 WD40 repeat protein [G 96.4 0.13 2.8E-06 39.3 11.5 82 28-110 207-295 (420)
183 KOG0301 Phospholipase A2-activ 96.4 0.12 2.5E-06 43.0 12.2 73 6-80 176-249 (745)
184 KOG0275 Conserved WD40 repeat- 96.4 0.011 2.4E-07 44.9 6.0 139 10-170 214-367 (508)
185 KOG0271 Notchless-like WD40 re 96.4 0.28 6E-06 38.4 13.2 135 12-168 118-263 (480)
186 PF05694 SBP56: 56kDa selenium 96.3 0.3 6.5E-06 39.0 13.5 125 30-172 222-394 (461)
187 KOG0268 Sof1-like rRNA process 96.3 0.031 6.6E-07 43.1 7.8 139 9-167 187-331 (433)
188 TIGR02276 beta_rpt_yvtn 40-res 96.3 0.029 6.4E-07 29.0 5.7 30 131-160 13-42 (42)
189 KOG2919 Guanine nucleotide-bin 96.2 0.11 2.5E-06 39.6 10.4 131 19-169 121-268 (406)
190 PF13360 PQQ_2: PQQ-like domai 96.2 0.28 6E-06 35.4 15.0 130 19-170 75-219 (238)
191 KOG0295 WD40 repeat-containing 96.2 0.14 3.1E-06 39.5 11.0 41 128-168 310-351 (406)
192 PF05096 Glu_cyclase_2: Glutam 96.1 0.37 8E-06 36.0 14.4 108 9-142 44-159 (264)
193 TIGR03300 assembly_YfgL outer 96.1 0.14 3.1E-06 40.0 11.2 58 20-80 65-125 (377)
194 PRK11138 outer membrane biogen 96.1 0.13 2.8E-06 40.6 10.8 57 20-80 69-140 (394)
195 COG1520 FOG: WD40-like repeat 96.0 0.16 3.4E-06 39.8 11.0 62 17-80 65-131 (370)
196 KOG2919 Guanine nucleotide-bin 96.0 0.39 8.5E-06 36.8 12.2 96 8-110 157-268 (406)
197 KOG3881 Uncharacterized conser 95.9 0.29 6.3E-06 38.2 11.5 130 14-162 207-342 (412)
198 KOG2110 Uncharacterized conser 95.9 0.61 1.3E-05 36.2 13.1 58 95-169 175-236 (391)
199 PF00058 Ldl_recept_b: Low-den 95.8 0.033 7.2E-07 29.2 4.5 38 21-59 1-42 (42)
200 PF02333 Phytase: Phytase; In 95.8 0.71 1.5E-05 36.4 16.3 103 9-112 155-279 (381)
201 KOG0639 Transducin-like enhanc 95.8 0.056 1.2E-06 43.5 7.4 109 13-142 469-583 (705)
202 PF14583 Pectate_lyase22: Olig 95.7 0.42 9E-06 37.6 11.9 122 30-170 168-300 (386)
203 TIGR03118 PEPCTERM_chp_1 conse 95.7 0.67 1.4E-05 35.4 16.6 62 5-68 18-94 (336)
204 KOG2110 Uncharacterized conser 95.6 0.6 1.3E-05 36.2 12.1 81 28-113 151-238 (391)
205 KOG1963 WD40 repeat protein [G 95.5 0.47 1E-05 40.5 12.2 92 12-111 208-310 (792)
206 KOG1273 WD40 repeat protein [G 95.5 0.66 1.4E-05 35.5 11.8 69 12-80 26-97 (405)
207 KOG0305 Anaphase promoting com 95.5 1.1 2.3E-05 36.6 14.1 140 11-170 303-450 (484)
208 KOG0284 Polyadenylation factor 95.5 0.13 2.8E-06 40.4 8.2 130 14-166 101-237 (464)
209 PF05935 Arylsulfotrans: Aryls 95.5 0.57 1.2E-05 38.2 12.5 112 15-145 153-306 (477)
210 KOG0285 Pleiotropic regulator 95.5 0.9 2E-05 35.4 12.7 102 5-112 147-254 (460)
211 KOG0292 Vesicle coat complex C 95.5 0.82 1.8E-05 39.7 13.3 68 7-76 248-318 (1202)
212 KOG0283 WD40 repeat-containing 95.4 0.92 2E-05 38.4 13.4 93 12-111 372-470 (712)
213 KOG0316 Conserved WD40 repeat- 95.4 0.67 1.4E-05 34.1 11.1 118 28-170 79-202 (307)
214 PLN00033 photosystem II stabil 95.4 1.1 2.3E-05 35.8 16.5 94 15-110 244-344 (398)
215 KOG2394 WD40 protein DMR-N9 [G 95.4 0.42 9E-06 39.0 10.9 88 49-161 291-384 (636)
216 PRK13616 lipoprotein LpqB; Pro 95.3 1.5 3.2E-05 36.8 14.5 142 12-171 399-558 (591)
217 KOG2394 WD40 protein DMR-N9 [G 95.3 0.11 2.5E-06 42.0 7.5 89 11-103 292-384 (636)
218 PF01731 Arylesterase: Arylest 95.3 0.1 2.2E-06 32.1 5.8 40 30-71 36-75 (86)
219 cd00216 PQQ_DH Dehydrogenases 95.2 1.4 3.1E-05 36.0 14.1 113 20-144 61-187 (488)
220 KOG2315 Predicted translation 95.1 1.5 3.2E-05 35.9 13.8 120 31-172 252-375 (566)
221 KOG0643 Translation initiation 95.1 0.81 1.8E-05 34.2 10.9 97 50-168 11-110 (327)
222 KOG0306 WD40-repeat-containing 95.1 0.93 2E-05 38.5 12.3 134 11-169 510-652 (888)
223 COG3292 Predicted periplasmic 95.1 0.28 6.1E-06 40.3 9.2 96 14-112 380-482 (671)
224 KOG0639 Transducin-like enhanc 95.0 0.27 5.8E-06 39.8 8.8 104 6-113 548-653 (705)
225 KOG1215 Low-density lipoprotei 94.9 0.95 2.1E-05 39.8 13.0 141 10-171 437-586 (877)
226 COG1520 FOG: WD40-like repeat 94.9 0.7 1.5E-05 36.2 11.2 96 14-112 105-205 (370)
227 KOG0310 Conserved WD40 repeat- 94.9 1.6 3.5E-05 35.1 13.4 132 15-168 116-255 (487)
228 PF00930 DPPIV_N: Dipeptidyl p 94.8 1.5 3.2E-05 34.2 15.9 141 14-171 188-347 (353)
229 TIGR02276 beta_rpt_yvtn 40-res 94.8 0.13 2.8E-06 26.4 4.8 37 21-58 4-42 (42)
230 KOG0646 WD40 repeat protein [G 94.8 0.72 1.6E-05 36.8 10.5 107 20-144 188-311 (476)
231 KOG0316 Conserved WD40 repeat- 94.7 1.2 2.6E-05 32.8 11.5 56 23-80 158-215 (307)
232 KOG1009 Chromatin assembly com 94.7 0.8 1.7E-05 36.0 10.5 98 49-166 66-180 (434)
233 PRK13684 Ycf48-like protein; P 94.6 1.6 3.5E-05 33.8 15.8 95 12-110 175-276 (334)
234 KOG0319 WD40-repeat-containing 94.5 0.59 1.3E-05 39.4 9.9 139 9-167 62-208 (775)
235 COG3211 PhoX Predicted phospha 94.4 0.3 6.5E-06 40.1 7.9 59 50-110 501-571 (616)
236 KOG0645 WD40 repeat protein [G 94.2 1.7 3.7E-05 32.5 16.9 101 10-113 62-170 (312)
237 KOG0306 WD40-repeat-containing 94.2 2.8 6.1E-05 35.8 13.2 101 48-167 454-566 (888)
238 KOG1445 Tumor-specific antigen 94.2 0.5 1.1E-05 39.5 8.8 136 12-170 630-783 (1012)
239 PF10647 Gmad1: Lipoprotein Lp 94.0 1.8 3.9E-05 32.1 14.4 97 50-169 25-129 (253)
240 KOG4649 PQQ (pyrrolo-quinoline 94.0 1.9 4.2E-05 32.3 13.4 56 55-113 99-156 (354)
241 KOG3914 WD repeat protein WDR4 94.0 0.49 1.1E-05 36.9 8.0 103 48-171 62-171 (390)
242 KOG0264 Nucleosome remodeling 93.9 1.4 3.1E-05 34.9 10.5 136 12-169 180-334 (422)
243 KOG0640 mRNA cleavage stimulat 93.9 1.6 3.4E-05 33.5 10.3 65 12-78 264-333 (430)
244 KOG0284 Polyadenylation factor 93.7 0.51 1.1E-05 37.1 7.7 95 10-111 181-282 (464)
245 KOG4497 Uncharacterized conser 93.7 2 4.4E-05 33.2 10.6 134 16-170 15-152 (447)
246 PRK13684 Ycf48-like protein; P 93.7 2.6 5.6E-05 32.7 15.7 90 14-110 94-189 (334)
247 KOG0641 WD40 repeat protein [G 93.5 1.9 4.1E-05 31.6 9.8 68 12-80 234-304 (350)
248 KOG1524 WD40 repeat-containing 93.5 3 6.5E-05 34.4 11.8 95 10-110 146-243 (737)
249 KOG0285 Pleiotropic regulator 93.4 2.4 5.3E-05 33.1 10.7 133 6-163 190-331 (460)
250 cd00216 PQQ_DH Dehydrogenases 93.3 3.8 8.3E-05 33.5 13.5 18 23-40 304-322 (488)
251 PF10647 Gmad1: Lipoprotein Lp 93.2 2.6 5.6E-05 31.3 15.8 91 11-106 25-124 (253)
252 KOG0305 Anaphase promoting com 93.2 2.7 5.9E-05 34.3 11.3 101 47-169 300-405 (484)
253 KOG1408 WD40 repeat protein [F 93.1 0.91 2E-05 38.5 8.6 98 11-113 80-185 (1080)
254 COG3823 Glutamine cyclotransfe 93.0 1.9 4.1E-05 31.3 9.0 86 22-110 142-246 (262)
255 KOG0292 Vesicle coat complex C 92.9 2.5 5.4E-05 36.9 11.1 67 9-77 9-78 (1202)
256 KOG1524 WD40 repeat-containing 92.9 0.9 1.9E-05 37.2 8.2 83 22-111 77-164 (737)
257 TIGR03118 PEPCTERM_chp_1 conse 92.9 3.4 7.3E-05 31.7 14.0 147 10-161 77-253 (336)
258 KOG1036 Mitotic spindle checkp 92.8 3.3 7.2E-05 31.5 12.8 77 9-86 13-92 (323)
259 KOG3881 Uncharacterized conser 92.3 2.8 6.1E-05 32.9 9.9 98 50-168 204-307 (412)
260 PLN00033 photosystem II stabil 92.3 4.9 0.00011 32.1 13.7 95 12-110 283-387 (398)
261 PF06739 SBBP: Beta-propeller 92.2 0.22 4.8E-06 25.5 2.8 18 10-27 13-30 (38)
262 PF02897 Peptidase_S9_N: Proly 92.2 3.6 7.7E-05 32.6 10.9 106 54-170 128-245 (414)
263 KOG1036 Mitotic spindle checkp 92.0 4.4 9.5E-05 30.9 13.4 47 125-171 247-294 (323)
264 KOG4497 Uncharacterized conser 92.0 1.7 3.7E-05 33.6 8.2 101 3-110 86-195 (447)
265 KOG2321 WD40 repeat protein [G 92.0 4.9 0.00011 33.4 11.2 38 133-170 295-332 (703)
266 KOG2321 WD40 repeat protein [G 91.9 6.1 0.00013 32.9 11.7 128 13-159 137-279 (703)
267 KOG0265 U5 snRNP-specific prot 91.8 3.3 7.1E-05 31.6 9.4 76 49-145 48-125 (338)
268 PF14870 PSII_BNR: Photosynthe 91.7 4.9 0.00011 30.8 16.1 98 12-111 147-250 (302)
269 KOG1272 WD40-repeat-containing 91.6 2.3 5E-05 34.3 8.9 33 10-42 130-164 (545)
270 KOG4328 WD40 protein [Function 91.5 3.5 7.6E-05 33.1 9.8 98 11-112 188-299 (498)
271 PF07494 Reg_prop: Two compone 91.5 0.34 7.4E-06 22.0 2.7 18 94-111 5-22 (24)
272 PF06433 Me-amine-dh_H: Methyl 91.4 5.7 0.00012 30.9 15.8 151 9-169 134-307 (342)
273 KOG0267 Microtubule severing p 91.1 2.8 6E-05 35.6 9.2 137 8-170 111-257 (825)
274 KOG0302 Ribosome Assembly prot 90.9 6.6 0.00014 30.9 11.3 65 12-77 214-285 (440)
275 KOG2395 Protein involved in va 90.9 8.3 0.00018 31.9 13.0 130 20-169 344-489 (644)
276 KOG0294 WD40 repeat-containing 90.5 6.6 0.00014 30.2 12.5 91 12-110 86-185 (362)
277 KOG0299 U3 snoRNP-associated p 90.5 3.2 7E-05 33.2 8.7 99 10-110 328-443 (479)
278 PF11768 DUF3312: Protein of u 90.5 2 4.3E-05 35.4 7.8 66 11-77 261-327 (545)
279 PF08553 VID27: VID27 cytoplas 90.4 1.6 3.5E-05 37.8 7.6 65 12-77 580-645 (794)
280 KOG1963 WD40 repeat protein [G 90.4 6.5 0.00014 33.9 10.9 92 12-104 254-356 (792)
281 KOG0276 Vesicle coat complex C 90.2 5.7 0.00012 33.4 10.2 32 5-36 223-255 (794)
282 KOG4378 Nuclear protein COP1 [ 89.9 2.1 4.6E-05 34.8 7.4 69 12-80 211-281 (673)
283 KOG0649 WD40 repeat protein [G 89.5 7 0.00015 29.1 13.9 68 8-78 113-184 (325)
284 KOG2315 Predicted translation 89.5 8.6 0.00019 31.7 10.5 94 13-112 274-373 (566)
285 KOG0308 Conserved WD40 repeat- 89.3 12 0.00027 31.6 13.1 69 10-80 172-243 (735)
286 KOG0771 Prolactin regulatory e 89.2 5 0.00011 31.7 8.8 54 54-111 149-204 (398)
287 KOG0299 U3 snoRNP-associated p 89.2 10 0.00022 30.5 13.6 115 37-169 316-443 (479)
288 PRK13614 lipoprotein LpqB; Pro 89.1 12 0.00027 31.4 14.0 99 12-111 385-503 (573)
289 KOG2314 Translation initiation 88.9 6.3 0.00014 32.7 9.4 62 94-169 493-555 (698)
290 KOG0313 Microtubule binding pr 88.4 11 0.00024 29.8 12.8 136 10-170 194-364 (423)
291 KOG0650 WD40 repeat nucleolar 88.1 6.4 0.00014 32.9 9.0 95 10-111 522-626 (733)
292 PF02333 Phytase: Phytase; In 87.9 1.1 2.3E-05 35.4 4.5 66 10-76 208-286 (381)
293 KOG4283 Transcription-coupled 87.8 11 0.00023 29.0 10.8 71 9-80 188-278 (397)
294 KOG0649 WD40 repeat protein [G 87.4 10 0.00022 28.3 10.2 82 50-154 116-200 (325)
295 PF11768 DUF3312: Protein of u 87.3 7.2 0.00016 32.3 8.9 59 48-112 259-318 (545)
296 KOG0641 WD40 repeat protein [G 87.3 9.8 0.00021 28.0 14.0 52 58-110 191-248 (350)
297 PF07676 PD40: WD40-like Beta 87.1 1.4 3E-05 22.2 3.4 15 155-169 12-26 (39)
298 KOG0918 Selenium-binding prote 86.9 3.8 8.1E-05 32.6 6.9 21 152-172 389-409 (476)
299 KOG0301 Phospholipase A2-activ 86.9 18 0.0004 30.8 11.3 25 54-80 145-169 (745)
300 smart00564 PQQ beta-propeller 86.8 1.6 3.4E-05 20.9 3.4 14 131-144 15-28 (33)
301 PF05694 SBP56: 56kDa selenium 86.5 4.4 9.5E-05 32.7 7.2 62 50-112 313-393 (461)
302 PF02897 Peptidase_S9_N: Proly 86.5 15 0.00031 29.2 14.3 93 14-109 128-242 (414)
303 KOG0295 WD40 repeat-containing 86.4 14 0.00031 29.0 13.4 127 15-169 241-392 (406)
304 KOG0322 G-protein beta subunit 86.0 2.3 5E-05 31.9 5.1 59 10-70 252-313 (323)
305 KOG3914 WD repeat protein WDR4 85.9 13 0.00028 29.4 9.3 63 12-75 110-177 (390)
306 KOG1063 RNA polymerase II elon 85.9 14 0.0003 31.5 9.9 100 10-111 268-379 (764)
307 PF00400 WD40: WD domain, G-be 85.5 2.3 5.1E-05 21.0 3.8 28 9-36 11-39 (39)
308 KOG2111 Uncharacterized conser 84.8 16 0.00035 28.2 11.4 61 45-110 178-243 (346)
309 PF13570 PQQ_3: PQQ-like domai 84.7 1.4 3E-05 22.4 2.7 24 14-38 16-39 (40)
310 KOG2111 Uncharacterized conser 84.6 16 0.00036 28.1 13.9 57 96-169 184-244 (346)
311 KOG0288 WD40 repeat protein Ti 84.5 3.9 8.5E-05 32.4 6.0 55 14-69 392-451 (459)
312 KOG1272 WD40-repeat-containing 83.5 8.3 0.00018 31.2 7.5 40 71-112 272-312 (545)
313 KOG4441 Proteins containing BT 83.3 26 0.00057 29.5 12.3 129 20-169 380-528 (571)
314 TIGR02608 delta_60_rpt delta-6 82.9 3.7 8E-05 22.9 4.0 31 12-42 3-41 (55)
315 KOG0269 WD40 repeat-containing 82.9 9.1 0.0002 32.9 7.8 122 25-173 105-240 (839)
316 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.8 26 0.00057 29.1 14.9 15 156-170 391-405 (527)
317 PF04762 IKI3: IKI3 family; I 82.5 36 0.00079 30.5 12.8 41 130-170 95-139 (928)
318 PF14870 PSII_BNR: Photosynthe 82.4 20 0.00044 27.5 15.6 136 10-171 17-164 (302)
319 KOG1445 Tumor-specific antigen 81.9 32 0.00069 29.4 11.0 80 28-110 698-781 (1012)
320 PF11725 AvrE: Pathogenicity f 81.1 17 0.00036 34.3 9.2 52 13-66 366-418 (1774)
321 PF14269 Arylsulfotran_2: Aryl 81.0 23 0.00049 27.1 13.0 32 10-41 144-177 (299)
322 KOG4441 Proteins containing BT 80.8 33 0.00072 28.9 12.2 111 20-148 332-460 (571)
323 KOG0303 Actin-binding protein 80.6 28 0.0006 27.9 11.5 129 13-164 85-229 (472)
324 COG5167 VID27 Protein involved 80.4 33 0.00071 28.6 11.9 139 11-169 468-621 (776)
325 KOG0313 Microtubule binding pr 80.4 27 0.00059 27.7 13.8 102 6-110 257-363 (423)
326 PF14339 DUF4394: Domain of un 79.9 21 0.00045 26.4 8.0 69 10-80 27-105 (236)
327 PF14339 DUF4394: Domain of un 79.6 22 0.00048 26.2 8.9 79 50-148 28-111 (236)
328 KOG0264 Nucleosome remodeling 79.0 24 0.00051 28.3 8.5 99 10-111 228-335 (422)
329 KOG0281 Beta-TrCP (transducin 78.4 11 0.00024 29.5 6.4 82 20-111 287-376 (499)
330 KOG0650 WD40 repeat nucleolar 77.8 42 0.00091 28.4 12.6 53 10-63 401-455 (733)
331 KOG4649 PQQ (pyrrolo-quinoline 77.4 29 0.00063 26.3 11.3 61 17-80 101-167 (354)
332 PF01011 PQQ: PQQ enzyme repea 77.3 5 0.00011 20.1 3.2 15 130-144 8-22 (38)
333 COG5354 Uncharacterized protei 77.2 40 0.00087 27.8 11.6 62 96-171 318-379 (561)
334 KOG4328 WD40 protein [Function 76.9 39 0.00084 27.5 11.3 111 13-140 373-495 (498)
335 TIGR03074 PQQ_membr_DH membran 76.7 52 0.0011 28.9 14.7 21 20-40 194-215 (764)
336 COG5276 Uncharacterized conser 75.7 35 0.00075 26.4 12.8 89 20-113 96-190 (370)
337 KOG0269 WD40 repeat-containing 75.7 54 0.0012 28.6 10.5 92 12-110 136-237 (839)
338 smart00284 OLF Olfactomedin-li 75.6 31 0.00068 25.8 15.0 133 20-171 83-243 (255)
339 KOG1310 WD40 repeat protein [G 75.5 43 0.00094 28.1 9.3 102 5-110 46-165 (758)
340 PF14269 Arylsulfotran_2: Aryl 74.9 35 0.00077 26.1 11.3 88 51-147 146-247 (299)
341 PF00930 DPPIV_N: Dipeptidyl p 74.8 38 0.00082 26.4 13.2 41 131-171 259-300 (353)
342 KOG0281 Beta-TrCP (transducin 74.6 29 0.00063 27.3 7.8 55 21-78 247-304 (499)
343 PF04053 Coatomer_WDAD: Coatom 73.8 47 0.001 27.0 12.7 127 10-169 33-162 (443)
344 COG5276 Uncharacterized conser 73.4 40 0.00087 26.0 12.8 86 22-113 140-232 (370)
345 KOG1408 WD40 repeat protein [F 72.9 56 0.0012 28.5 9.5 54 94-164 597-654 (1080)
346 KOG0647 mRNA export protein (c 72.0 43 0.00094 25.8 10.0 79 49-150 28-112 (347)
347 KOG0322 G-protein beta subunit 71.8 10 0.00022 28.6 4.6 53 95-164 253-306 (323)
348 PF05935 Arylsulfotrans: Aryls 69.4 62 0.0013 26.6 14.5 88 20-110 113-206 (477)
349 KOG1007 WD repeat protein TSSC 69.3 45 0.00097 25.7 7.5 28 50-79 125-152 (370)
350 PF15492 Nbas_N: Neuroblastoma 67.5 52 0.0011 25.0 12.5 66 14-80 2-74 (282)
351 PF02191 OLF: Olfactomedin-lik 66.4 52 0.0011 24.5 15.2 38 134-171 197-238 (250)
352 KOG2395 Protein involved in va 65.4 43 0.00092 28.0 7.2 65 12-77 433-498 (644)
353 KOG4547 WD40 repeat-containing 65.0 82 0.0018 26.3 14.1 109 28-161 78-194 (541)
354 KOG0307 Vesicle coat complex C 64.6 22 0.00048 31.9 5.9 100 12-112 119-227 (1049)
355 PRK10115 protease 2; Provision 64.4 27 0.00059 30.1 6.5 61 94-170 127-190 (686)
356 KOG4227 WD40 repeat protein [G 64.2 75 0.0016 25.6 12.3 98 10-110 57-166 (609)
357 KOG4532 WD40-like repeat conta 64.0 63 0.0014 24.6 11.1 23 54-77 163-186 (344)
358 KOG2314 Translation initiation 62.5 83 0.0018 26.5 8.4 95 14-113 450-557 (698)
359 KOG0277 Peroxisomal targeting 61.4 69 0.0015 24.2 11.3 65 11-77 62-132 (311)
360 KOG3621 WD40 repeat-containing 61.1 43 0.00094 28.7 6.8 29 11-39 126-155 (726)
361 PF04762 IKI3: IKI3 family; I 60.6 1.3E+02 0.0028 27.2 16.5 65 12-77 78-148 (928)
362 KOG1063 RNA polymerase II elon 60.2 1.1E+02 0.0025 26.4 10.0 104 49-169 268-379 (764)
363 COG4247 Phy 3-phytase (myo-ino 60.2 73 0.0016 24.2 7.8 27 11-37 206-233 (364)
364 KOG1538 Uncharacterized conser 60.0 1.2E+02 0.0025 26.4 14.2 91 13-109 136-238 (1081)
365 TIGR03803 Gloeo_Verruco Gloeo_ 59.6 21 0.00046 17.7 3.7 24 20-43 1-30 (34)
366 PF15492 Nbas_N: Neuroblastoma 58.3 80 0.0017 24.0 9.4 56 54-111 2-61 (282)
367 KOG4227 WD40 repeat protein [G 57.2 1E+02 0.0022 24.8 8.1 24 46-71 54-77 (609)
368 COG4590 ABC-type uncharacteriz 56.6 29 0.00064 28.5 4.9 20 151-170 357-376 (733)
369 PRK13613 lipoprotein LpqB; Pro 55.1 1.3E+02 0.0029 25.6 15.3 97 12-109 411-522 (599)
370 PHA02790 Kelch-like protein; P 54.6 1.2E+02 0.0026 24.9 13.5 57 20-78 318-383 (480)
371 COG4993 Gcd Glucose dehydrogen 54.1 1.4E+02 0.003 25.8 8.4 81 61-145 214-295 (773)
372 KOG0302 Ribosome Assembly prot 54.0 63 0.0014 25.8 6.2 67 9-77 257-329 (440)
373 KOG1920 IkappaB kinase complex 53.4 72 0.0016 29.4 7.1 42 130-171 88-129 (1265)
374 KOG0267 Microtubule severing p 53.0 35 0.00075 29.5 5.0 92 11-109 72-170 (825)
375 COG4222 Uncharacterized protei 52.5 1.2E+02 0.0026 24.3 10.9 15 155-169 203-217 (391)
376 PHA02713 hypothetical protein; 51.5 1.5E+02 0.0032 25.0 13.7 47 20-69 351-406 (557)
377 TIGR03074 PQQ_membr_DH membran 51.5 1.4E+02 0.003 26.4 8.5 20 60-80 194-214 (764)
378 KOG0308 Conserved WD40 repeat- 50.5 1.6E+02 0.0036 25.3 12.9 106 11-140 119-243 (735)
379 KOG3567 Peptidylglycine alpha- 49.8 43 0.00094 27.3 4.9 22 92-113 465-486 (501)
380 KOG0276 Vesicle coat complex C 49.0 1.8E+02 0.0038 25.1 13.4 85 23-110 70-158 (794)
381 KOG3621 WD40 repeat-containing 49.0 1.2E+02 0.0025 26.3 7.3 90 22-113 47-145 (726)
382 PF14157 YmzC: YmzC-like prote 48.4 28 0.0006 19.9 2.7 15 133-147 42-56 (63)
383 TIGR02171 Fb_sc_TIGR02171 Fibr 48.4 2.1E+02 0.0045 25.8 9.0 45 59-106 317-362 (912)
384 PRK10115 protease 2; Provision 47.7 1.9E+02 0.0041 25.1 11.6 101 51-169 129-240 (686)
385 KOG1523 Actin-related protein 46.8 1.4E+02 0.003 23.4 11.5 63 12-76 58-126 (361)
386 PF08309 LVIVD: LVIVD repeat; 46.0 37 0.0008 17.6 2.8 23 54-78 6-28 (42)
387 PHA02713 hypothetical protein; 45.3 1.9E+02 0.004 24.4 13.0 49 20-70 303-360 (557)
388 PF05567 Neisseria_PilC: Neiss 44.8 75 0.0016 24.8 5.6 38 132-169 231-276 (335)
389 KOG0307 Vesicle coat complex C 44.4 1.2E+02 0.0025 27.7 7.0 66 14-80 69-148 (1049)
390 smart00284 OLF Olfactomedin-li 44.4 1.3E+02 0.0029 22.5 10.3 98 13-111 131-242 (255)
391 KOG0647 mRNA export protein (c 41.0 1.7E+02 0.0037 22.7 14.2 76 10-85 28-110 (347)
392 TIGR02171 Fb_sc_TIGR02171 Fibr 40.9 2.8E+02 0.006 25.1 8.7 44 23-67 322-367 (912)
393 COG1770 PtrB Protease II [Amin 40.7 2.4E+02 0.0053 24.4 14.4 36 130-168 246-285 (682)
394 KOG4714 Nucleoporin [Nuclear s 39.8 56 0.0012 24.8 3.9 27 14-40 228-256 (319)
395 KOG1517 Guanine nucleotide bin 38.8 3.3E+02 0.0071 25.4 9.0 95 13-109 1260-1367(1387)
396 KOG0321 WD40 repeat-containing 38.4 2E+02 0.0043 24.8 7.1 54 22-77 66-127 (720)
397 COG5354 Uncharacterized protei 35.9 2.6E+02 0.0057 23.4 11.4 95 13-113 278-379 (561)
398 KOG1379 Serine/threonine prote 34.1 2.3E+02 0.0049 22.1 7.0 73 60-149 180-253 (330)
399 smart00706 TECPR Beta propelle 33.4 63 0.0014 15.5 3.6 24 12-35 10-33 (35)
400 KOG0321 WD40 repeat-containing 33.3 3.2E+02 0.0069 23.6 11.0 27 54-80 276-302 (720)
401 PF12894 Apc4_WD40: Anaphase-p 33.3 81 0.0018 16.7 4.0 30 11-40 13-43 (47)
402 PRK13614 lipoprotein LpqB; Pro 32.3 3.2E+02 0.0069 23.3 14.6 89 12-106 345-446 (573)
403 KOG2079 Vacuolar assembly/sort 31.9 2.1E+02 0.0045 26.4 6.6 81 72-171 110-195 (1206)
404 KOG3617 WD40 and TPR repeat-co 31.3 1.9E+02 0.0042 26.1 6.2 96 12-111 18-119 (1416)
405 KOG0277 Peroxisomal targeting 31.1 2.4E+02 0.0052 21.5 11.0 65 12-78 11-89 (311)
406 PRK13615 lipoprotein LpqB; Pro 31.0 3.3E+02 0.0072 23.1 13.6 89 12-106 336-429 (557)
407 COG4247 Phy 3-phytase (myo-ino 30.7 2.5E+02 0.0053 21.5 13.5 19 153-171 206-224 (364)
408 PF04790 Sarcoglycan_1: Sarcog 30.6 2.4E+02 0.0051 21.3 6.0 19 9-27 184-203 (264)
409 KOG1645 RING-finger-containing 30.2 2E+02 0.0043 23.3 5.7 67 10-77 194-264 (463)
410 KOG1332 Vesicle coat complex C 30.0 2.1E+02 0.0045 21.6 5.5 69 5-74 203-281 (299)
411 PF10584 Proteasome_A_N: Prote 29.1 25 0.00053 15.8 0.4 7 158-164 7-13 (23)
412 smart00320 WD40 WD40 repeats. 28.2 63 0.0014 13.9 3.6 25 11-35 14-39 (40)
413 PF13964 Kelch_6: Kelch motif 26.7 1E+02 0.0023 15.9 4.3 34 103-147 10-43 (50)
414 PF07250 Glyoxal_oxid_N: Glyox 26.6 2.7E+02 0.0059 20.7 10.8 94 16-111 73-187 (243)
415 KOG1275 PAB-dependent poly(A) 26.0 5.1E+02 0.011 23.7 10.0 48 20-70 186-236 (1118)
416 KOG4640 Anaphase-promoting com 25.9 4.3E+02 0.0094 22.8 7.2 61 15-77 26-90 (665)
417 KOG0290 Conserved WD40 repeat- 25.5 3.3E+02 0.0071 21.2 9.4 94 11-110 198-305 (364)
418 PRK14131 N-acetylneuraminic ac 25.3 3.4E+02 0.0073 21.3 15.1 48 20-69 38-92 (376)
419 KOG3558 Hypoxia-inducible fact 25.0 59 0.0013 28.0 2.2 15 157-171 133-147 (768)
420 PRK12690 flgF flagellar basal 24.9 2.9E+02 0.0063 20.4 7.6 13 97-109 136-148 (238)
421 KOG2377 Uncharacterized conser 24.3 4.2E+02 0.0092 22.1 10.5 27 50-77 68-94 (657)
422 PF13088 BNR_2: BNR repeat-lik 24.2 2.9E+02 0.0063 20.2 9.3 13 97-109 263-275 (275)
423 PF13983 YsaB: YsaB-like lipop 23.8 87 0.0019 18.3 2.1 13 157-169 63-75 (77)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 23.7 1.1E+02 0.0023 24.8 3.4 41 96-153 310-350 (415)
425 PF03178 CPSF_A: CPSF A subuni 23.1 3.4E+02 0.0074 20.6 10.4 64 20-87 98-169 (321)
426 KOG1587 Cytoplasmic dynein int 23.0 3.4E+02 0.0073 23.1 6.2 67 10-77 442-514 (555)
427 PF13186 SPASM: Iron-sulfur cl 22.8 56 0.0012 17.8 1.3 15 97-111 6-20 (64)
428 KOG1409 Uncharacterized conser 21.0 3.4E+02 0.0073 21.6 5.4 32 9-40 197-229 (404)
429 PF02191 OLF: Olfactomedin-lik 20.7 3.7E+02 0.0079 20.1 10.7 98 14-112 127-238 (250)
No 1
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.90 E-value=2.9e-22 Score=147.57 Aligned_cols=148 Identities=32% Similarity=0.451 Sum_probs=115.4
Q ss_pred cceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEc-cCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030675 12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVSE-EG-VTVLVS 86 (173)
Q Consensus 12 p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~-~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~ 86 (173)
|||++|++ +|.||++| .+++|+++++++.......... |. |++++ +++++ |+|+.. ++..++. ++ .+.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEee
Confidence 79999998 89999999 7889999998776655434343 88 99999 78777 999866 4555574 66 777776
Q ss_pred ccCCc-cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030675 87 QFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF 165 (173)
Q Consensus 87 ~~~~~-~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~ 165 (173)
...+. ++..||+++++++|++|+++....... ....++|++++++ +++..+..++..||||+|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence 65444 778999999999999999985421100 0111799999998 888899999999999999999999
Q ss_pred EEEEecCC
Q 030675 166 LVVCESWK 173 (173)
Q Consensus 166 lyv~~~~~ 173 (173)
|||+++.+
T Consensus 148 lyv~ds~~ 155 (246)
T PF08450_consen 148 LYVADSFN 155 (246)
T ss_dssp EEEEETTT
T ss_pred eeeccccc
Confidence 99999863
No 2
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.89 E-value=4.2e-22 Score=149.98 Aligned_cols=125 Identities=39% Similarity=0.713 Sum_probs=115.7
Q ss_pred cccCccccceEEccCC-cEEEEEeCCCeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccce
Q 030675 46 QVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122 (173)
Q Consensus 46 ~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~ 122 (173)
+.+++|. ||+|+..| ++ ||||.+.|++.+++.| .+.+.+..+|+++...|++.++++|.+||||.+..++.+++.
T Consensus 112 ~~CGRPL-Gl~f~~~ggdL-~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~ 189 (376)
T KOG1520|consen 112 PLCGRPL-GIRFDKKGGDL-YVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFV 189 (376)
T ss_pred cccCCcc-eEEeccCCCeE-EEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheE
Confidence 3468999 99999887 77 9999999999999866 677788889999999999999999999999999999998888
Q ss_pred eeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030675 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
..++++.++|++++||+.+..++++.+++.+|||+++|||+.++.++|+.
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~ 239 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT 239 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec
Confidence 89999999999999999999999999999999999999999999999975
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.1e-21 Score=146.11 Aligned_cols=156 Identities=27% Similarity=0.366 Sum_probs=122.3
Q ss_pred cCCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCc-EEE
Q 030675 9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGV-TVL 84 (173)
Q Consensus 9 ~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~-~~~ 84 (173)
..-.||..|++++ .||++| .+++|+++++ +|+...+..+...+. ++.++.+|++ ++|..+-.++..+..+. +.+
T Consensus 24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~L-v~~~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRL-IACEHGVRLLDPDTGGKITLL 101 (307)
T ss_pred cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeE-EEEccccEEEeccCCceeEEe
Confidence 5678999999965 688888 7889999997 477777777777788 9999999888 88866544444423344 788
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER 164 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~ 164 (173)
....++.+.++||++.++|+|++||++... .. ....+..+.|+|||+||.++..+++...+..|||||||||++
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK 175 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC
Confidence 888888899999999999999999998762 10 112233456799999997555555555699999999999999
Q ss_pred EEEEEecC
Q 030675 165 FLVVCESW 172 (173)
Q Consensus 165 ~lyv~~~~ 172 (173)
+||++||.
T Consensus 176 tly~aDT~ 183 (307)
T COG3386 176 TLYVADTP 183 (307)
T ss_pred EEEEEeCC
Confidence 99999985
No 4
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.81 E-value=4.3e-18 Score=125.38 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=107.8
Q ss_pred ccCCcceEEEcCCCCEEEEcC-C--------CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc
Q 030675 8 IVNHPEDVSVDGNGVLYTATG-D--------GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS 77 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~ 77 (173)
.+..|.+++++++|+||+++. . ++|++++++++...+......|+ ||+++++++.||+++.. +.|++++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence 478899999999999999982 1 67999998888777777788899 99999999988999876 4677777
Q ss_pred c--CC--c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030675 78 E--EG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG 150 (173)
Q Consensus 78 ~--~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 150 (173)
. ++ . +.+...... ...|++|++|++|+||++... .++|+++++++..+..+..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETTSCEEEEEE-S
T ss_pred ccccccceeeeeeEEEcCCC--CcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCCccEEEEEcCC
Confidence 4 23 2 222222111 135999999999999999642 37999999994445555555
Q ss_pred ccCcceEEE-ccCCCEEEEEec
Q 030675 151 LYFANGVAL-SEDERFLVVCES 171 (173)
Q Consensus 151 ~~~p~gi~~-~~dg~~lyv~~~ 171 (173)
...|..++| .++.+.||||..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 679999999 588899999964
No 5
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.77 E-value=1.1e-18 Score=107.53 Aligned_cols=77 Identities=51% Similarity=0.905 Sum_probs=63.0
Q ss_pred ccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030675 97 NDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (173)
Q Consensus 97 ~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~ 173 (173)
|+++++++ |.+||||.+..+....+..++++..++|+|++|||.++++++++.++..||||++++|+++|+|+|++|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence 68999998 899999999999998888899999999999999999999999999999999999999999999999975
No 6
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.74 E-value=3e-16 Score=121.85 Aligned_cols=165 Identities=22% Similarity=0.320 Sum_probs=116.2
Q ss_pred ceecCC-ccCCcceEEEcCCCCEEEEcC------------C-CeEEEEc-C--CCc---EEEeccccCccccceEEccCC
Q 030675 2 IKLGEG-IVNHPEDVSVDGNGVLYTATG------------D-GWIKRMH-P--NGT---WEDWHQVGSQSLLGLTTTKEN 61 (173)
Q Consensus 2 ~~~~~~-~~~~p~~l~~~~~g~l~~~~~------------~-~~i~~~~-~--~g~---~~~~~~~~~~p~~gl~~~~~g 61 (173)
+.++.. .+..|.++++|++|+|||++. . .+|++++ . +|+ ...+.+....|. ||++.++|
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G 83 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG 83 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence 445543 589999999999999999862 1 3888886 3 454 345566677899 99999998
Q ss_pred cEEEEEeCCCeEEEEc-cC------C-cEEEEeccCCc---cccCCccEEEcCCCcEEEEeCcCCcCcc--cceeeeccc
Q 030675 62 NVIIVCDSQQGLLKVS-EE------G-VTVLVSQFNGS---QLRFANDVIEASDGSLYFTVSSTKFTPA--EYYLDLVSG 128 (173)
Q Consensus 62 ~l~~v~~~~~~i~~~~-~~------g-~~~~~~~~~~~---~~~~~~~l~~~~dG~~~v~~~~~~~~~~--~~~~~~~~~ 128 (173)
+ ||++.. .|+++. .+ + .+.+...+... ..+.+++++++|||.|||+......... +......+.
T Consensus 84 -l-yV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 84 -V-YVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred -E-EEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 6 998644 577773 22 2 34555544332 2456899999999999999764211100 000001112
Q ss_pred CCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 129 ~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
...+.++|++|++++.+.++.++++|+|++|+++|+ +|++|.
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 235799999999999999999999999999999987 688875
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.8e-15 Score=113.11 Aligned_cols=146 Identities=17% Similarity=0.262 Sum_probs=108.6
Q ss_pred CccCCcceEEEcCCCCEEEEcCC------------CeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCC-Ce
Q 030675 7 GIVNHPEDVSVDGNGVLYTATGD------------GWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ-QG 72 (173)
Q Consensus 7 ~~~~~p~~l~~~~~g~l~~~~~~------------~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~-~~ 72 (173)
.....|..+.++|+|.+||++.. |.|||++++|+.++.... ...|| ||+|++|++.+|++++. +.
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCe
Confidence 35688999999999999999844 569999998887776555 77899 99999999888999987 56
Q ss_pred EEEEcc---CC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030675 73 LLKVSE---EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 73 i~~~~~---~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 145 (173)
+++++- ++ ...... .. ..-..|+++++|.+|++|++... ..++|.+|+|++....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~-~~-~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVD-FD-EEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG 248 (307)
T ss_pred EEEEecCcccCccCCcceEEE-cc-CCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence 777752 23 111111 11 11258999999999999975321 2249999999944455
Q ss_pred EeeccccCcceEEE-ccCCCEEEEEec
Q 030675 146 LVLDGLYFANGVAL-SEDERFLVVCES 171 (173)
Q Consensus 146 ~~~~~~~~p~gi~~-~~dg~~lyv~~~ 171 (173)
.+.-....|..++| .++.++|||+..
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEec
Confidence 55555588889999 678899999864
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.69 E-value=3.2e-15 Score=128.82 Aligned_cols=149 Identities=19% Similarity=0.285 Sum_probs=110.4
Q ss_pred CCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccc---------------cCccccceEEccCCcEEEEEe
Q 030675 6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQV---------------GSQSLLGLTTTKENNVIIVCD 68 (173)
Q Consensus 6 ~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~---------------~~~p~~gl~~~~~g~l~~v~~ 68 (173)
..++..|.++++++ +|.|||+| .+++|.+++.+|........ ...|. ||+++++++.+||++
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaD 642 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVAD 642 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEe
Confidence 44589999999998 68999999 77899999998876543221 23599 999999887669999
Q ss_pred CCC-eEEEEcc-CC-cEEEEec------cCC------ccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCc
Q 030675 69 SQQ-GLLKVSE-EG-VTVLVSQ------FNG------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (173)
Q Consensus 69 ~~~-~i~~~~~-~g-~~~~~~~------~~~------~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 132 (173)
.++ .|.+++. ++ .+.+... ..+ ..++.|.+++++| +|.+||++.. ++
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~ 705 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QH 705 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CC
Confidence 874 5666775 55 6555431 111 2367899999999 6789999754 25
Q ss_pred eEEEEcCCCCeeEEee---------------ccccCcceEEEccCCCEEEEEecC
Q 030675 133 VLLKYDPSTNQTSLVL---------------DGLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 133 ~v~~~d~~~~~~~~~~---------------~~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
+|+++|+.++.+..+. ..+..|+||+++||+++|||+++.
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence 7888887766554332 125679999999999999999875
No 9
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.60 E-value=1.5e-13 Score=118.66 Aligned_cols=145 Identities=24% Similarity=0.330 Sum_probs=106.0
Q ss_pred cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC-CcEEEec---------------cccCccccceEEccCCcEEEEEeCC
Q 030675 9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTWEDWH---------------QVGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~-g~~~~~~---------------~~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
+..|.+++++| +|.+|+++ .+++|++++.. |.+..+. .....|. ||+++++|+.+||++.+
T Consensus 682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~-GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS-GISLSPDLKELYIADSE 760 (1057)
T ss_pred cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc-EEEEeCCCCEEEEEECC
Confidence 67899999999 78999998 67889999864 4333221 1134689 99999999855999987
Q ss_pred -CeEEEEcc-CC-cEEEEecc-------------C----CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCC
Q 030675 71 -QGLLKVSE-EG-VTVLVSQF-------------N----GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (173)
Q Consensus 71 -~~i~~~~~-~g-~~~~~~~~-------------~----~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~ 130 (173)
+.|.+++. ++ ...+.... + ...+.+|.+++++++|++||++..
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------- 823 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------- 823 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----------------
Confidence 46777775 34 33322100 0 013568999999999999999854
Q ss_pred CceEEEEcCCCCeeEEeec--------------cccCcceEEEccCCCEEEEEecC
Q 030675 131 HGVLLKYDPSTNQTSLVLD--------------GLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 131 ~~~v~~~d~~~~~~~~~~~--------------~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
+++|.+||++++.+..++. .+..|.||+++++|+ +||+|+.
T Consensus 824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~ 878 (1057)
T PLN02919 824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN 878 (1057)
T ss_pred CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence 3689999998777654442 245799999999997 9999874
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.56 E-value=2.7e-13 Score=98.56 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=105.0
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL 84 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~ 84 (173)
..|..|+.+++|.+|+++ ..+.|-++|+ +|+...+. ..+..|+ +|.+.+||.. |+|+.+..|.++++ +. ++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~-Witd~~~aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSA-WITDTGLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCe-eEecCcceeEEecCcccceEEe
Confidence 468889999999999988 6778899996 67777664 3466899 9999999999 99999989999997 55 6666
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDE 163 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg 163 (173)
.-..+. .....+...+|++|++|||... |.-=|.||.++.++++... ...|+|||.+|||
T Consensus 140 ~lp~~~-a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG 200 (353)
T COG4257 140 PLPLEH-ADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG 200 (353)
T ss_pred eccccc-CCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence 433221 1235678899999999999532 2223667776655555432 5678999999999
Q ss_pred CEEEEEe
Q 030675 164 RFLVVCE 170 (173)
Q Consensus 164 ~~lyv~~ 170 (173)
. +|+++
T Consensus 201 s-vwyas 206 (353)
T COG4257 201 S-VWYAS 206 (353)
T ss_pred c-EEEEe
Confidence 7 66663
No 11
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.51 E-value=6.4e-12 Score=99.02 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=111.0
Q ss_pred CceecCCccCCcceEEEcCCCCEEEEcC-CCeEEEEcCCC-cEEEe------c-c-ccCccccceEEccCC------cEE
Q 030675 1 MIKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHPNG-TWEDW------H-Q-VGSQSLLGLTTTKEN------NVI 64 (173)
Q Consensus 1 ~~~~~~~~~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~~g-~~~~~------~-~-~~~~p~~gl~~~~~g------~l~ 64 (173)
++.++.+ |..|.++++.|+|++||+.. .|+|++++.++ ....+ . . ..+.+. ||+++|+= +.+
T Consensus 22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~l 99 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEE
Confidence 3567777 99999999999999999996 69999997543 22111 1 1 234577 99998762 345
Q ss_pred EEEeC----------CCeEEEEcc--C-C----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcC--c---cc-c
Q 030675 65 IVCDS----------QQGLLKVSE--E-G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFT--P---AE-Y 121 (173)
Q Consensus 65 ~v~~~----------~~~i~~~~~--~-g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~--~---~~-~ 121 (173)
|++-. ...|.++.. + . .+.+.........+.-..|+++|||.|||+....... . .+ .
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~ 179 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQ 179 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcch
Confidence 88741 235666542 1 1 2333333332233556789999999999986553210 0 00 0
Q ss_pred eee------e---cccCCCceEEEEcCCCC-----------eeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030675 122 YLD------L---VSGEPHGVLLKYDPSTN-----------QTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (173)
Q Consensus 122 ~~~------~---~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~ 173 (173)
... . -.....|+|+|+++++. ..+.++.++++|.||+|+|+|+ ||++|.++
T Consensus 180 aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp 250 (454)
T TIGR03606 180 AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP 250 (454)
T ss_pred hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence 000 0 11234689999999843 2467888999999999999765 99998753
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=8.7e-12 Score=96.25 Aligned_cols=147 Identities=21% Similarity=0.316 Sum_probs=95.3
Q ss_pred cCCcceEEEcCCC-CEEEEc-CCCeEEEEcCC---CcEEE----eccccCccccceEEccCCcEEEEEeCCC-eEEEEc-
Q 030675 9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN---GTWED----WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS- 77 (173)
Q Consensus 9 ~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~---g~~~~----~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~- 77 (173)
-..|.++.++|+| .+|+++ ...+|+.++.+ +++.. -.+.+..|. +++|+++|+++|+.+... .|..++
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCCCCcEEEEee
Confidence 4678899999987 588888 66778777632 23433 134567899 999999999989987664 444444
Q ss_pred --cCC-cEEEEec--c-CCc-cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec
Q 030675 78 --EEG-VTVLVSQ--F-NGS-QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD 149 (173)
Q Consensus 78 --~~g-~~~~~~~--~-~~~-~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 149 (173)
.+| ++.+... . .+. ....+.+|+++|||+ +|+++... ..=.++.+|+.+++++.+..
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~---------------~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS---------------NSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT---------------TEEEEEEECTTTTTEEEEEE
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC---------------CEEEEEEEecCCCceEEEEE
Confidence 355 4433221 1 111 123789999999997 78886431 11245666666676655432
Q ss_pred ---cccCcceEEEccCCCEEEEEec
Q 030675 150 ---GLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 150 ---~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
+...|.+|+++|+|++|||++-
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EeCCCCCccEEEEeCCCCEEEEEec
Confidence 3567999999999999999874
No 13
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.46 E-value=3.5e-12 Score=97.84 Aligned_cols=158 Identities=19% Similarity=0.255 Sum_probs=101.4
Q ss_pred cCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcE-EEec-------cccCccccceEEccC----CcEEEEEeCC------
Q 030675 9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWH-------QVGSQSLLGLTTTKE----NNVIIVCDSQ------ 70 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~-~~~~-------~~~~~p~~gl~~~~~----g~l~~v~~~~------ 70 (173)
|+.|.++++.|+|++||+...|+|++++.+|.. ..+. ....... |++++++ +.+ |++-..
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~l-Yv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYL-YVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EE-EEEEEEE-TSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEE-EEEEEcccCCCC
Confidence 578999999999999999999999999877765 2221 1123467 9999984 555 877542
Q ss_pred ---CeEEEEcc--C-C----cEEEEeccCC--ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030675 71 ---QGLLKVSE--E-G----VTVLVSQFNG--SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD 138 (173)
Q Consensus 71 ---~~i~~~~~--~-g----~~~~~~~~~~--~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 138 (173)
..|.++.. . . .+.+...... ...+....|+++|||.|||+-..... ..... ......|+|+|++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~--~~~~~~G~ilri~ 154 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ--DPNSLRGKILRID 154 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC--STTSSTTEEEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc--ccccccceEEEec
Confidence 24666552 2 1 2333332222 23356678999999999998654322 11000 1123468999999
Q ss_pred CCCC-------------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030675 139 PSTN-------------QTSLVLDGLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 139 ~~~~-------------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
+++. ..+.++.++++|.+++|+|....||++|.+
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 8743 356788899999999999994469999865
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=1e-10 Score=90.31 Aligned_cols=146 Identities=21% Similarity=0.323 Sum_probs=92.5
Q ss_pred CCcceEEEcCCC-CEEEEc-CCCeEEE--EcCCCcEEEec--------------cccCccccceEEccCCcEEEEEeCC-
Q 030675 10 NHPEDVSVDGNG-VLYTAT-GDGWIKR--MHPNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDSQ- 70 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~--~~~~g~~~~~~--------------~~~~~p~~gl~~~~~g~l~~v~~~~- 70 (173)
..|-.++++|++ .||++. ..+.+.. ++.+|++.... +....|+ .+.++|+|+.+|+++.+
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEecCC
Confidence 578899999987 577887 5677654 44567544321 2345789 99999999998999977
Q ss_pred CeEEEEc--cC-C-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030675 71 QGLLKVS--EE-G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 71 ~~i~~~~--~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 145 (173)
+.|..++ .. + +.... ...-.+...|..|+++|||+ +|+++... ..=.++.++..++..+
T Consensus 166 D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---------------~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNELS---------------NTVSVFDYDPSDGSLT 229 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETTT---------------TEEEEEEEETTTTEEE
T ss_pred CEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCCC---------------CcEEEEeecccCCcee
Confidence 4555555 32 2 33322 12223346899999999996 78885321 1124455554456544
Q ss_pred Eeec------c---ccCcceEEEccCCCEEEEEecC
Q 030675 146 LVLD------G---LYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 146 ~~~~------~---~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
.+.. + ...|.+|+++|||++|||++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 4321 1 1367899999999999999864
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=4.4e-10 Score=86.12 Aligned_cols=142 Identities=7% Similarity=0.083 Sum_probs=93.2
Q ss_pred CCcceEEEcCCCC-EEEEc-CCCeEEEEc--CCCcEEEe--ccccCccccceEEccCCcEEEEEeCCC-eEEEEc--cCC
Q 030675 10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--~~g 80 (173)
..|..++++|+|+ ||++. ..+.|..++ .+|++... ....+.|. +++++++|+.+|++.... .+..++ .+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 5689999999884 78876 567775554 35655432 23345789 999999999889887654 344443 355
Q ss_pred -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEE------eeccc
Q 030675 81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSL------VLDGL 151 (173)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~------~~~~~ 151 (173)
.........+ ...|+.++++|+|+ +|+++.. ++.|..||.++ +.+.. -....
T Consensus 114 ~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 114 IPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred CCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCC
Confidence 3222222222 24689999999996 6677532 35677777654 33221 11224
Q ss_pred cCcceEEEccCCCEEEEEec
Q 030675 152 YFANGVALSEDERFLVVCES 171 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~~~ 171 (173)
..|++++|+|||+++||++.
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CCCceEEECCCCCEEEEEec
Confidence 67899999999999999874
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.30 E-value=3.2e-10 Score=86.89 Aligned_cols=144 Identities=12% Similarity=0.160 Sum_probs=88.5
Q ss_pred CCcceEEEcCCCC-EEEEc-CCCeEEEEcC--CCcEEE---eccccCccccceEEccCCcEEEEEeCCC-eEEEEc--cC
Q 030675 10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP--NGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EE 79 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~--~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--~~ 79 (173)
..|.+++++|+|+ ||++. .++.|..++. +|.... .......|+ +++++++|+.+|+++... .|..++ .+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 3689999999885 77776 5677776653 453321 112335689 999999999989988774 454444 33
Q ss_pred C-cEEE-EeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEE--EEcCCCCeeEEeec-----
Q 030675 80 G-VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLL--KYDPSTNQTSLVLD----- 149 (173)
Q Consensus 80 g-~~~~-~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~--~~d~~~~~~~~~~~----- 149 (173)
| .... .....-.....|++++++|||+ +|+++.. +++|. .++..+++.+.+..
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 4 3211 0000111125799999999997 6777532 24554 44433444333221
Q ss_pred ----cccCcceEEEccCCCEEEEEec
Q 030675 150 ----GLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 150 ----~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
+...+.+|+++||+++||+++.
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecC
Confidence 1224457999999999999864
No 17
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.24 E-value=1e-09 Score=78.55 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=96.7
Q ss_pred EEEcCCCCEEEEc----------CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEE--c-cCC
Q 030675 15 VSVDGNGVLYTAT----------GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKV--S-EEG 80 (173)
Q Consensus 15 l~~~~~g~l~~~~----------~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~--~-~~g 80 (173)
=-+||+|+.|.+. ..+.++++-+.+++..+....+.++ ||++|.+.+.+|+.+.-+ .+-.. + +.|
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 3568899988655 1356777877888887778888999 999999998889988764 35333 3 455
Q ss_pred ----cEEEEeccCCccc--cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccC
Q 030675 81 ----VTVLVSQFNGSQL--RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYF 153 (173)
Q Consensus 81 ----~~~~~~~~~~~~~--~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~ 153 (173)
...+.+....+++ .-|++|++|.+|++||+..+ .++|+++||.||++-+- .-....
T Consensus 193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCc
Confidence 2333333332332 36999999999999999753 37999999999875322 223444
Q ss_pred cceEEEc-cCCCEEEEEe
Q 030675 154 ANGVALS-EDERFLVVCE 170 (173)
Q Consensus 154 p~gi~~~-~dg~~lyv~~ 170 (173)
...+||. ++-..+||+-
T Consensus 256 itsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTT 273 (310)
T ss_pred eEEEEecCCCccEEEEEe
Confidence 5678884 5566888874
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.8e-09 Score=80.08 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=93.8
Q ss_pred CCcceEEEcCCCC-EEEEc-CCCeEE--EEcCCCcEEEe---ccc----------cCccccceEEccCCcEEEEEeCC-C
Q 030675 10 NHPEDVSVDGNGV-LYTAT-GDGWIK--RMHPNGTWEDW---HQV----------GSQSLLGLTTTKENNVIIVCDSQ-Q 71 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~~-~~~~i~--~~~~~g~~~~~---~~~----------~~~p~~gl~~~~~g~l~~v~~~~-~ 71 (173)
..|-.+++|++|+ ||++. ..|.|. .+..+|.+... ... ...++ -..++|++++|++++-+ +
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 4568899999985 55555 445544 44557764322 111 12366 77789999998899877 5
Q ss_pred eEEEEc-cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030675 72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (173)
Q Consensus 72 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 148 (173)
++...+ .+| ++... ...-++...|..|+++|+|. .|+.+.- .+.=.++.|++..++.+.+-
T Consensus 168 ri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 168 RIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEee
Confidence 666655 477 43322 22224557899999999998 5776421 12235677787667766554
Q ss_pred cc------c---cCcceEEEccCCCEEEEEecC
Q 030675 149 DG------L---YFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 149 ~~------~---~~p~gi~~~~dg~~lyv~~~~ 172 (173)
.- + .....|.+++|||+||+++.+
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence 32 2 233458999999999999864
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=4.1e-09 Score=82.48 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=105.1
Q ss_pred CcceEEEcCCC-CEEEEcC---CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEccCCcEEE
Q 030675 11 HPEDVSVDGNG-VLYTATG---DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEGVTVL 84 (173)
Q Consensus 11 ~p~~l~~~~~g-~l~~~~~---~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g~~~~ 84 (173)
.|.++++++++ .+|+++. ++.+..+|.. ++.......+..|. +++++++|..+|+++.. +.+..++..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~-~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT-GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc-eEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 79999999976 8999995 5788999864 45555544555788 99999999977999955 45666776552111
Q ss_pred -Eecc-CCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEE
Q 030675 85 -VSQF-NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVA 158 (173)
Q Consensus 85 -~~~~-~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~ 158 (173)
.... .-.....|.+++++++|. +|+++... .++.+.++|..++..... .... .|.+++
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---------------~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~ 259 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---------------GSNNVLKIDTATGNVTATDLPVGSG-APRGVA 259 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccC---------------CCceEEEEeCCCceEEEeccccccC-CCCcee
Confidence 1110 112346899999999996 89987541 236899999988766544 2234 789999
Q ss_pred EccCCCEEEEEec
Q 030675 159 LSEDERFLVVCES 171 (173)
Q Consensus 159 ~~~dg~~lyv~~~ 171 (173)
++|+|+.+|+++.
T Consensus 260 ~~p~g~~~yv~~~ 272 (381)
T COG3391 260 VDPAGKAAYVANS 272 (381)
T ss_pred ECCCCCEEEEEec
Confidence 9999999999865
No 20
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.19 E-value=1.6e-09 Score=79.15 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=107.2
Q ss_pred ccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEecccc---CccccceEEccCCcEEEEEeCCC-eEEEEccCC-
Q 030675 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG- 80 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~---~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g- 80 (173)
+=.+|.|++..|+|.+|++. .+..|-++|+ ++..+++.... .... .+-.|+.|++ |+++.+. .++++++.-
T Consensus 187 qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR-riwsdpig~~-wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 187 QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR-RIWSDPIGRA-WITTWGTGSLHRFDPSVT 264 (353)
T ss_pred CCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc-ccccCccCcE-EEeccCCceeeEeCcccc
Confidence 33689999999999999988 6678999995 67655553322 2345 6667899999 9988764 588888643
Q ss_pred -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030675 81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL 159 (173)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~ 159 (173)
-... .+.+. ...|.+|.+|..|++|+++.. .+.|.||||++.+.+++...-.+++.+++
T Consensus 265 sW~ey--pLPgs-~arpys~rVD~~grVW~sea~-----------------agai~rfdpeta~ftv~p~pr~n~gn~ql 324 (353)
T COG4257 265 SWIEY--PLPGS-KARPYSMRVDRHGRVWLSEAD-----------------AGAIGRFDPETARFTVLPIPRPNSGNIQL 324 (353)
T ss_pred cceee--eCCCC-CCCcceeeeccCCcEEeeccc-----------------cCceeecCcccceEEEecCCCCCCCceec
Confidence 1111 12222 147899999999999999754 37899999999888888877788888999
Q ss_pred ccCCCEEEEEecC
Q 030675 160 SEDERFLVVCESW 172 (173)
Q Consensus 160 ~~dg~~lyv~~~~ 172 (173)
++....+|.+|.+
T Consensus 325 ~gr~ge~W~~e~g 337 (353)
T COG4257 325 DGRPGELWFTEAG 337 (353)
T ss_pred cCCCCceeecccC
Confidence 8877778888754
No 21
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=8.1e-09 Score=77.60 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=99.8
Q ss_pred cceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEEEe----ccccCccccceEEccCCcEEEEEeCC-CeEEEEc--c-CC
Q 030675 12 PEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDW----HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--E-EG 80 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~~~----~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~-~g 80 (173)
+....++|+| .|++.| ...+|+.++. +|++... ..++..|. .|+|+|+++++|+...- +.|..+. . .|
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 5677888988 577777 6667766653 7765432 35577899 99999999999976654 4444443 3 35
Q ss_pred -cEEEEec---cC-CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---cc
Q 030675 81 -VTVLVSQ---FN-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GL 151 (173)
Q Consensus 81 -~~~~~~~---~~-~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~ 151 (173)
++.+... .+ -...++..+|.+++||+ +|+++... .+=.++++|+.+++++.+.. ..
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---------------dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---------------DSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC---------------CeEEEEEEcCCCCEEEEEEEeccCC
Confidence 5544322 11 12236788999999998 67776431 12378999999887766643 35
Q ss_pred cCcceEEEccCCCEEEEEe
Q 030675 152 YFANGVALSEDERFLVVCE 170 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~~ 170 (173)
..|.+..|++.|++|+++.
T Consensus 291 ~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 291 QFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred cCCccceeCCCCCEEEEEc
Confidence 7799999999999999974
No 22
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.11 E-value=6.8e-09 Score=88.62 Aligned_cols=140 Identities=20% Similarity=0.284 Sum_probs=95.6
Q ss_pred cCCcceEEEcC-CCCEEEEc-CCCeEEEEc-CC-----CcEEEe----------cccc-----------CccccceEEcc
Q 030675 9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMH-PN-----GTWEDW----------HQVG-----------SQSLLGLTTTK 59 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~-~~-----g~~~~~----------~~~~-----------~~p~~gl~~~~ 59 (173)
...--.+|++| +|.||+++ ...+|+|+. .. +.+..+ .+.+ ..|. ||++|+
T Consensus 406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk 484 (1899)
T KOG4659|consen 406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDK 484 (1899)
T ss_pred ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEcc
Confidence 34455699999 99999999 567899885 11 223322 1111 1399 999999
Q ss_pred CCcEEEEEeCCCeEEEEccCC-cEEEEecc---------------CCccccCCccEEEcC-CCcEEEEeCcCCcCcccce
Q 030675 60 ENNVIIVCDSQQGLLKVSEEG-VTVLVSQF---------------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYY 122 (173)
Q Consensus 60 ~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~ 122 (173)
+|.+ |+++.. .|..+|.+| ++.+...- ..-.+.+|.+|+++| |+.+||-|..
T Consensus 485 ~g~l-YfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n--------- 553 (1899)
T KOG4659|consen 485 MGNL-YFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN--------- 553 (1899)
T ss_pred CCcE-EEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------
Confidence 9998 999854 688889899 66554221 112356999999999 8999998753
Q ss_pred eeecccCCCceEEEEcCCCCeeEEeec---------------------cccCcceEEEccCCCEEEEEecC
Q 030675 123 LDLVSGEPHGVLLKYDPSTNQTSLVLD---------------------GLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
-|+++++. +.++..+. .+..+..|+++++| .|||+|+.
T Consensus 554 ----------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD 612 (1899)
T KOG4659|consen 554 ----------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESD 612 (1899)
T ss_pred ----------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEecc
Confidence 45555554 33332221 13445789999999 49999874
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.09 E-value=4.2e-08 Score=73.26 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=89.4
Q ss_pred CCcceEEEcCCCC-EEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEccCCcEEEE
Q 030675 10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEGVTVLV 85 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g~~~~~ 85 (173)
..|.+++++|+|. +|++. .++.|+.++.. ++..........+. .++++++++.+|++... ..+..++....+.+.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 4578899999885 67665 67889999854 55544333344577 89999999876777654 346666643311111
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF 165 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~ 165 (173)
....+ ..+.+++++|+|.++++... ....+..+|.++++..........|..++|+|+++.
T Consensus 110 ~~~~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 110 EIPVG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE 170 (300)
T ss_pred EeeCC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence 11111 34788999999987665321 112455678776654333222345788999999998
Q ss_pred EEEE
Q 030675 166 LVVC 169 (173)
Q Consensus 166 lyv~ 169 (173)
||++
T Consensus 171 l~~~ 174 (300)
T TIGR03866 171 LWVS 174 (300)
T ss_pred EEEE
Confidence 8876
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.7e-08 Score=77.89 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=102.6
Q ss_pred CCcceEEEcCCC-CEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCCcEE
Q 030675 10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEGVTV 83 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g~~~ 83 (173)
..|.++++.+.| ++|+.. ....|..++.. .+.......+..|. +++++++++.+|+++.. +.+..++......
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 678999999977 599888 55789999843 33344445555899 99999999777999984 3566677543111
Q ss_pred EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-----eeccccCcceE
Q 030675 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFANGV 157 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~~~~~p~gi 157 (173)
......+ ..|.+++++|+|. +|+++. .+++|..+|+.+..+.. .......|.++
T Consensus 153 ~~~~~vG---~~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i 212 (381)
T COG3391 153 TATIPVG---NTPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI 212 (381)
T ss_pred EEEEecC---CCcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCceE
Confidence 1112222 2579999999997 999973 34689999987555443 23347889999
Q ss_pred EEccCCCEEEEEecC
Q 030675 158 ALSEDERFLVVCESW 172 (173)
Q Consensus 158 ~~~~dg~~lyv~~~~ 172 (173)
+++|+|+.+||++..
T Consensus 213 ~v~~~g~~~yV~~~~ 227 (381)
T COG3391 213 AVDPDGNRVYVANDG 227 (381)
T ss_pred EECCCCCEEEEEecc
Confidence 999999999999865
No 25
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.99 E-value=3.1e-08 Score=76.90 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=97.1
Q ss_pred ceecCCccCCcceEEEcCCCCEEEEcCC-CeEEEEcCCC--------cEEEeccc----------------cCccccceE
Q 030675 2 IKLGEGIVNHPEDVSVDGNGVLYTATGD-GWIKRMHPNG--------TWEDWHQV----------------GSQSLLGLT 56 (173)
Q Consensus 2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~-~~i~~~~~~g--------~~~~~~~~----------------~~~p~~gl~ 56 (173)
+.+.++ ++.|.++++.|+|.+.++... |.+..+...+ ........ ...+. +++
T Consensus 60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~a 137 (399)
T COG2133 60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GIS 137 (399)
T ss_pred cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EEE
Confidence 456677 999999999999977777744 6666553211 11111111 11233 444
Q ss_pred EccCCcEEEEEeCCCeEEEEcc-CC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCc-----ccceeeec
Q 030675 57 TTKENNVIIVCDSQQGLLKVSE-EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP-----AEYYLDLV 126 (173)
Q Consensus 57 ~~~~g~l~~v~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~-----~~~~~~~~ 126 (173)
+ +.+.+ |+++.. .+.+++. +. ...+...+++...++-..|+++|||+|||+-.+...-. ......++
T Consensus 138 ~-~~~~~-~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~ 214 (399)
T COG2133 138 E-PGGGL-YVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVL 214 (399)
T ss_pred e-ecCCc-eEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccccee
Confidence 4 22233 444322 3455551 11 23333344433356778999999999999976641100 00000111
Q ss_pred ccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030675 127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (173)
Q Consensus 127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~ 173 (173)
+. ....+...|+.+...+++..+.++|.|++|+|....||++|.++
T Consensus 215 r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 215 RI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred ee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 11 12355566666667788999999999999999966799998764
No 26
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.97 E-value=4.5e-08 Score=76.26 Aligned_cols=142 Identities=13% Similarity=0.200 Sum_probs=87.0
Q ss_pred cceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC--cEEEE
Q 030675 12 PEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG--VTVLV 85 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g--~~~~~ 85 (173)
+.++++.++| .+|+++.++.|..+|. +++...-...+..|. |+++++||+++|+++.. +.+..+|. +. +..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 4557788888 5999888899999995 566666567788899 99999999998888865 45666674 33 33332
Q ss_pred ec-cCC-ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE--EeeccccCcceEEEcc
Q 030675 86 SQ-FNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE 161 (173)
Q Consensus 86 ~~-~~~-~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~p~gi~~~~ 161 (173)
.. ... .+..++.++..++....|+.+.. ..+.++.+|....+.. ........|.+..|+|
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence 11 110 12234566777777765665321 3468898886543221 2233457889999999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
++|+++++.
T Consensus 182 dgry~~va~ 190 (369)
T PF02239_consen 182 DGRYFLVAA 190 (369)
T ss_dssp TSSEEEEEE
T ss_pred ccceeeecc
Confidence 999999864
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.95 E-value=2.2e-07 Score=69.36 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=83.5
Q ss_pred CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC-cEEEEeccCCccccC
Q 030675 21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG-VTVLVSQFNGSQLRF 95 (173)
Q Consensus 21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g-~~~~~~~~~~~~~~~ 95 (173)
+.+|++. .++.|+.|+. +++..........+. +++++++|+.+|++.... .+..++. ++ ....... + ..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~---~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--G---PD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--C---CC
Confidence 4677776 6788999986 455544334455688 999999998767776543 4666664 44 2221111 1 24
Q ss_pred CccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 96 ~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
+..++++|+|+ +|++.. .++.+..+|..+++..........|.+++|+|+++.++++.
T Consensus 75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence 57789999987 566532 23688999988665433333234578999999999887764
No 28
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.92 E-value=2.6e-08 Score=77.61 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred ceecCCccCCcceEEEcCCCCEEEEcCCCeEEEE-cCCC------cEEEeccc--------cCccccceEEccCCcEEEE
Q 030675 2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRM-HPNG------TWEDWHQV--------GSQSLLGLTTTKENNVIIV 66 (173)
Q Consensus 2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~-~~~g------~~~~~~~~--------~~~p~~gl~~~~~g~l~~v 66 (173)
+.++++ +..|.++++.++| |||++. ..|+++ +.++ +.+.+... ...++ ++++++||++ |+
T Consensus 65 ~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~L-Yv 139 (367)
T TIGR02604 65 NVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWL-YF 139 (367)
T ss_pred EEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCE-EE
Confidence 345566 8899999999998 999874 468888 4332 33333221 12377 9999999998 99
Q ss_pred EeCC--------------------CeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 67 CDSQ--------------------QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 67 ~~~~--------------------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
+... .+++++++++ .+.+... +..|++++++++|.+|++|+.
T Consensus 140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-----~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-----FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC-----cCCCccceECCCCCEEEEccC
Confidence 7651 2488888876 5555432 468999999999999999874
No 29
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.89 E-value=4.8e-08 Score=74.57 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=93.4
Q ss_pred ccCCcceEEEcCCC-CEEEEcCCCeEEEEcCCCcEEE-eccc-cC----ccccceEEccCCcEEEEEeCCC---------
Q 030675 8 IVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWED-WHQV-GS----QSLLGLTTTKENNVIIVCDSQQ--------- 71 (173)
Q Consensus 8 ~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~~~-~~~~-~~----~p~~gl~~~~~g~l~~v~~~~~--------- 71 (173)
.+.+|-||+++..| .||++|+.-.+++++++|.... ..++ .+ ..+ ++.++++|.+ |+++...
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~v-yFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVV-YFTDSSSKYDRRDFVF 190 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeE-EEeccccccchhheEE
Confidence 46789999999965 9999998888999998876543 2222 12 357 9999998888 9998542
Q ss_pred ---------eEEEEccC-C-cEEEEeccCCccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcC
Q 030675 72 ---------GLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP 139 (173)
Q Consensus 72 ---------~i~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 139 (173)
++++.|+. . .+.+.+ .+..||+++++||+.+ .+++.. ..++.||-.
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi 248 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWI 248 (376)
T ss_pred eeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeec-----------------cceeeeeEe
Confidence 12333321 1 222222 2468999999999975 455432 246666665
Q ss_pred CC---CeeEEeecc-ccCcceEEEccCCCEEEEE
Q 030675 140 ST---NQTSLVLDG-LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 140 ~~---~~~~~~~~~-~~~p~gi~~~~dg~~lyv~ 169 (173)
.+ |+.++++.+ ...|..|..+++|. .||+
T Consensus 249 ~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVa 281 (376)
T KOG1520|consen 249 KGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVA 281 (376)
T ss_pred cCCccCchhhHhhcCCCCCcceeECCCCC-EEEE
Confidence 43 344777875 68899999999997 5554
No 30
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.86 E-value=5.6e-08 Score=80.19 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=100.0
Q ss_pred CCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEccCC-cE-
Q 030675 10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-VT- 82 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~~- 82 (173)
.-+-||.||= +..+|++| ....|.+-..+|. ...+......|. ||++|.-+|-+|+++.-. .|-....+| .+
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence 3467888886 66788999 4455666666663 345667778999 999998877779998653 343333466 33
Q ss_pred EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEc
Q 030675 83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALS 160 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~ 160 (173)
.+.. ..+..|.+|++|+ .|+||++|... .+-+|-+.++++..-+.+. +.+..||||+|+
T Consensus 1104 vLf~----tdLVNPR~iv~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFY----TDLVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred EEEe----ecccCcceEEeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccCCCCCceeC
Confidence 2221 1135799999999 67899998752 2236777777754444443 458999999999
Q ss_pred cCCCEEEEEecC
Q 030675 161 EDERFLVVCESW 172 (173)
Q Consensus 161 ~dg~~lyv~~~~ 172 (173)
|-.+.|-|.|.+
T Consensus 1165 pfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAG 1176 (1289)
T ss_pred cccceeeEEecC
Confidence 999988888764
No 31
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.86 E-value=1.4e-07 Score=80.86 Aligned_cols=156 Identities=18% Similarity=0.257 Sum_probs=97.2
Q ss_pred ccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEecc--------------------ccCccccceEEccCCcEEEEE
Q 030675 8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQ--------------------VGSQSLLGLTTTKENNVIIVC 67 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~--------------------~~~~p~~gl~~~~~g~l~~v~ 67 (173)
.|..|.|+++|..|.|||+|.. .|.++|.+|.+..+.. ...+|. .|+++|=.+-|||.
T Consensus 473 ~L~~PkGIa~dk~g~lYfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 473 QLIFPKGIAFDKMGNLYFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLVL 550 (1899)
T ss_pred eeccCCceeEccCCcEEEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEEe
Confidence 5789999999999999999853 5888887775544310 134699 99999943444888
Q ss_pred eCCCeEEEEccCC-cEEEEec---c--C-----------CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCC
Q 030675 68 DSQQGLLKVSEEG-VTVLVSQ---F--N-----------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP 130 (173)
Q Consensus 68 ~~~~~i~~~~~~g-~~~~~~~---~--~-----------~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~ 130 (173)
+ .+-|++++.++ +.++... + . ...+..+.+|++.++|.+||++.... +...+-.-..
T Consensus 551 d-~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r-----riNrvr~~~t 624 (1899)
T KOG4659|consen 551 D-TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR-----RINRVRKLST 624 (1899)
T ss_pred e-cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch-----hhhheEEecc
Confidence 6 44688888877 5543211 0 0 11234678999999999999975421 0000111122
Q ss_pred CceEEEEcCCCCee--------E------Eee--ccccCcceEEEccCCCEEEEEecC
Q 030675 131 HGVLLKYDPSTNQT--------S------LVL--DGLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 131 ~~~v~~~d~~~~~~--------~------~~~--~~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
+|++..+.-....+ . ..+ ..+..|..+|++|||. +||+|.+
T Consensus 625 dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~g 681 (1899)
T KOG4659|consen 625 DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSG 681 (1899)
T ss_pred CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCC
Confidence 33444333110000 0 011 1267889999999996 9999875
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.85 E-value=4e-07 Score=67.03 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=36.2
Q ss_pred cCCccCCcceEEEcCC-CCEE-EEcCCCeEEEEcCCCcEEEeccc--cCccccceEEccCCcEEEEEe
Q 030675 5 GEGIVNHPEDVSVDGN-GVLY-TATGDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCD 68 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~~-g~l~-~~~~~~~i~~~~~~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~ 68 (173)
.++....+.||+++|+ ++|| |.+..+.|+.++.+|++.+..+. .+.+. ||++..++++ ++++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~-vl~~ 82 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRY-VLSE 82 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEE-EEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEE-EEEE
Confidence 4565667999999995 6788 55677889999888876543222 23466 6666655555 4443
No 33
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.84 E-value=7e-08 Score=79.62 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=104.2
Q ss_pred ceecCCccCCcceEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEE--eccccCccccceEEccCCcEEEEEeCCC---eEE
Q 030675 2 IKLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLL 74 (173)
Q Consensus 2 ~~~~~~~~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~ 74 (173)
|++....|-.|||||+|.- .++|++| ...+|-.-..+|+..+ +....-.|. +|++|+=++-||++++.. .|-
T Consensus 1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIe 1138 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIE 1138 (1289)
T ss_pred ceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCcce
Confidence 3445555899999999984 5899988 5566766666776444 344456899 999998544449999763 477
Q ss_pred EEccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc
Q 030675 75 KVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL 151 (173)
Q Consensus 75 ~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 151 (173)
..+.|| .+++.+.- +..||+|.|+|..+ |-|+|.. ..++..+.+++...+++..++
T Consensus 1139 ts~mDG~NrRilin~D----igLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~L 1197 (1289)
T KOG1214|consen 1139 TSSMDGENRRILINTD----IGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNL 1197 (1289)
T ss_pred eeccCCccceEEeecc----cCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhcc
Confidence 777788 55555432 35899999999764 7777654 257888888755556677789
Q ss_pred cCcceEEEccCCCEEEEEec
Q 030675 152 YFANGVALSEDERFLVVCES 171 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~~~ 171 (173)
..|.+|+-.. +.+|++|-
T Consensus 1198 qYPF~itsy~--~~fY~TDW 1215 (1289)
T KOG1214|consen 1198 QYPFSITSYA--DHFYHTDW 1215 (1289)
T ss_pred cCceeeeecc--ccceeecc
Confidence 9998887544 44898873
No 34
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.83 E-value=1.1e-06 Score=64.64 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=89.3
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVL 84 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~ 84 (173)
-+.||++.. +.+||.-. ..+..+.+|++. +...-..-.+... ||+.+.+ .+ |+++..+.+..+|+.. ...+
T Consensus 90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~dg~-~L-i~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSDGK-RL-IMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEECSS-CE-EEE-SSSEEEEE-TTT-SEEEEE
T ss_pred ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcCCC-EE-EEECCccceEEECCcccceEEEE
Confidence 467888887 55788555 667788898753 2222122345677 8885433 55 9999888999999754 4444
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--c------------
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--G------------ 150 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~------------ 150 (173)
.....+.+....|.|.+- +|.+|.--.. +..|.++||++|++..... +
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 444567888899999997 7888875432 2589999999999877642 1
Q ss_pred --ccCcceEEEccCCCEEEEE
Q 030675 151 --LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 151 --~~~p~gi~~~~dg~~lyv~ 169 (173)
...-||||++|+.+.+|||
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEE
Confidence 1245899999999999997
No 35
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=98.79 E-value=1.8e-07 Score=75.84 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=81.4
Q ss_pred cCCccCCcceEEEcC-CCCEEEEcCCCe---EEE--------EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCe
Q 030675 5 GEGIVNHPEDVSVDG-NGVLYTATGDGW---IKR--------MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG 72 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~-~g~l~~~~~~~~---i~~--------~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~ 72 (173)
+...|.+||++.++| +|.+|++..++. ... -+..|++.++.+....+. +..+.-+ +++++.....
T Consensus 345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~-~~~f~~~--~~~~~g~~~~ 421 (524)
T PF05787_consen 345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHA-ATTFTWE--LFLVGGDPTD 421 (524)
T ss_pred ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccc-cceeEEE--EEEEecCccc
Confidence 345689999999999 689998762222 000 112244444433333333 3333221 2122211000
Q ss_pred EEEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcc-----cce--eeecccCCCceEEEEcCCCCeeE
Q 030675 73 LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPA-----EYY--LDLVSGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 73 i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~-----~~~--~~~~~~~~~~~v~~~d~~~~~~~ 145 (173)
. ............+.+|+.|+++++|+|||++........ ... ..+....... ++..++.+++++
T Consensus 422 -~------~~~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~ 493 (524)
T PF05787_consen 422 -A------SGNGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELK 493 (524)
T ss_pred -c------cccccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeecccccccee
Confidence 0 000011122334679999999999999997644221110 000 0011111111 556677777777
Q ss_pred Eeeccc--cCcceEEEccCCCEEEEE
Q 030675 146 LVLDGL--YFANGVALSEDERFLVVC 169 (173)
Q Consensus 146 ~~~~~~--~~p~gi~~~~dg~~lyv~ 169 (173)
.+.... ....|++|+||+++|||+
T Consensus 494 rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 494 RFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeccCCCCcccccceECCCCCEEEEE
Confidence 776553 445799999999999996
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.77 E-value=1.3e-06 Score=67.32 Aligned_cols=108 Identities=8% Similarity=-0.034 Sum_probs=73.9
Q ss_pred CCEEEEcCC-----CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC---------CC-eEEEEcc-CC--c
Q 030675 21 GVLYTATGD-----GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS---------QQ-GLLKVSE-EG--V 81 (173)
Q Consensus 21 g~l~~~~~~-----~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~---------~~-~i~~~~~-~g--~ 81 (173)
.++|+.+.. ++|+.+|. +++.....+.+..|+ ++ +++||+.+|+|.. .. .|-.+|. +. .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 468988843 88999996 455666667788999 97 9999999999987 32 3555554 33 2
Q ss_pred EEEEecc--CCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030675 82 TVLVSQF--NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (173)
Q Consensus 82 ~~~~~~~--~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 146 (173)
..+.... ..+-...+..++++|||+ +||++.. +.+.|..+|..++++..
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEEECCCCcEEE
Confidence 2222110 111135778999999996 7888532 45789999988776543
No 37
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=75.50 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=82.0
Q ss_pred eecCCccCCcceEEEcC-CCCEEEEcCCCe-EEE-------EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeE
Q 030675 3 KLGEGIVNHPEDVSVDG-NGVLYTATGDGW-IKR-------MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGL 73 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~-~g~l~~~~~~~~-i~~-------~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i 73 (173)
+++...|..||++++.| .|.+|++..++. --. -+.-|++.+|.+...... +-.+-.+ +++.|. ....
T Consensus 410 ~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t-~~~ftWd--lF~~aG-~~~~ 485 (616)
T COG3211 410 KLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHT-DTKFTWD--LFVEAG-NPSV 485 (616)
T ss_pred HhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCcc-Cccceee--eeeecC-Cccc
Confidence 45677899999999999 689998873322 100 011245566544433222 2222122 312221 1111
Q ss_pred EEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--
Q 030675 74 LKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-- 151 (173)
Q Consensus 74 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-- 151 (173)
...... .....--|.+|++|++|+.|+||+...........+.. .-..+..-++.+++++....+.
T Consensus 486 ~~~~~~------~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g 553 (616)
T COG3211 486 LEGGAS------ANINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIG 553 (616)
T ss_pred cccccc------cCcccccccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCc
Confidence 111110 01111235789999999999999965432211111100 0013444456667776666553
Q ss_pred cCcceEEEccCCCEEEEE
Q 030675 152 YFANGVALSEDERFLVVC 169 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~ 169 (173)
..-.|.+|+||+++|||+
T Consensus 554 ~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 554 CEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred ceeecceeCCCCceEEEE
Confidence 345799999999999996
No 38
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3.5e-06 Score=67.17 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=86.7
Q ss_pred CcceEEEcCCCC-EEE-Ec--CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-
Q 030675 11 HPEDVSVDGNGV-LYT-AT--GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G- 80 (173)
Q Consensus 11 ~p~~l~~~~~g~-l~~-~~--~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g- 80 (173)
....++|.|+|. |++ +. .+..|+.++.. |+...+....+... ..+++|||+.++++... ..|+.++.+ +
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 345688999885 444 33 34679999964 45444433344445 78899999865544322 358888854 4
Q ss_pred cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~ 159 (173)
...+... . .......++|||+ ++++... .....||++|.++++.+.+......-...+|
T Consensus 282 ~~~Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 282 TTRLTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred eEEccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence 4444321 1 1234578999996 5555321 1224799999987777766544333345789
Q ss_pred ccCCCEEEEEe
Q 030675 160 SEDERFLVVCE 170 (173)
Q Consensus 160 ~~dg~~lyv~~ 170 (173)
+|||+.|+++.
T Consensus 342 SpdG~~ia~~~ 352 (435)
T PRK05137 342 SPRGDLIAFTK 352 (435)
T ss_pred CCCCCEEEEEE
Confidence 99999887754
No 39
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.73 E-value=6.6e-08 Score=59.35 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=49.5
Q ss_pred cEEEcCCCcEEEEeCcCCcCcccce--eeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030675 98 DVIEASDGSLYFTVSSTKFTPAEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173 (173)
Q Consensus 98 ~l~~~~dG~~~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~ 173 (173)
+|+.-....+|+|+.+. -...++ .+.....+-+.|..+|+ ++.+.++.++..||||+++|++++|||+++.+
T Consensus 2 DIvavG~~sFy~TNDhy--f~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDHY--FTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLA 75 (86)
T ss_pred CEEEECcCcEEEECchh--hCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence 34333334789987542 112221 12222345578888998 46888999999999999999999999999764
No 40
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.72 E-value=4.9e-06 Score=64.25 Aligned_cols=103 Identities=8% Similarity=0.062 Sum_probs=63.3
Q ss_pred CCcEEEEEeCCCeEEEEccCC--cE---EEEeccCC--ccccCCcc---EEEcCCC-cEEEEeCcCCcCcccceeeeccc
Q 030675 60 ENNVIIVCDSQQGLLKVSEEG--VT---VLVSQFNG--SQLRFAND---VIEASDG-SLYFTVSSTKFTPAEYYLDLVSG 128 (173)
Q Consensus 60 ~g~l~~v~~~~~~i~~~~~~g--~~---~~~~~~~~--~~~~~~~~---l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~ 128 (173)
+|+.+|++.. ..+..++..+ .. .+.....+ +..-.|-+ ++++++| ++||.......+- ..
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t--------hk 275 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT--------HK 275 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc--------cc
Confidence 6777677655 4577777322 11 11111011 00113444 9999987 5888532111000 12
Q ss_pred CCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC-EEEEEec
Q 030675 129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER-FLVVCES 171 (173)
Q Consensus 129 ~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~-~lyv~~~ 171 (173)
.+.+.|+.+|+.++++.........|.+|+++||++ .||+++.
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 345699999999988766666667899999999999 9999873
No 41
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.8e-06 Score=68.00 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=84.5
Q ss_pred ceEEEcCCCC-EEEE-cC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030675 13 EDVSVDGNGV-LYTA-TG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~-~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~ 82 (173)
..+.|+|+|. |+++ .. ...|+.++.+ |+...+....+... ..++++||+.++++... ..|+.++.+ + .+
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 4689999884 5544 32 3468999864 44444433333345 67899999865554322 248888854 4 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+.... ......+++|||+ ++++... .....||++|.++++.+.+........+.+|+|
T Consensus 300 ~lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp 359 (448)
T PRK04792 300 RITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP 359 (448)
T ss_pred ECccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECC
Confidence 433211 1345678999996 5555321 122479999998887766543323334578999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||++||++.
T Consensus 360 DG~~l~~~~ 368 (448)
T PRK04792 360 DGRSMIMVN 368 (448)
T ss_pred CCCEEEEEE
Confidence 999998864
No 42
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.69 E-value=1.9e-07 Score=57.70 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=48.9
Q ss_pred ceEEEcCC-CCEEEEcC------------------CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCC-C
Q 030675 13 EDVSVDGN-GVLYTATG------------------DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-Q 71 (173)
Q Consensus 13 ~~l~~~~~-g~l~~~~~------------------~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~ 71 (173)
.+|+++++ |.+||++. .|+++++|+.. +...+.+....|+ |+++++|+..++||+.. .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCc
Confidence 36889997 99999983 38899999865 4556667778999 99999999988999876 5
Q ss_pred eEEEEccCC
Q 030675 72 GLLKVSEEG 80 (173)
Q Consensus 72 ~i~~~~~~g 80 (173)
+|.+++-+|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 687776443
No 43
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.68 E-value=3.3e-07 Score=65.89 Aligned_cols=149 Identities=19% Similarity=0.174 Sum_probs=88.0
Q ss_pred ceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCC--cEEEEEeCCCeEEEEccCC----c--
Q 030675 13 EDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKEN--NVIIVCDSQQGLLKVSEEG----V-- 81 (173)
Q Consensus 13 ~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g--~l~~v~~~~~~i~~~~~~g----~-- 81 (173)
||+.|+. .+.||+.| ..+.|+|+|. +....+..-+..... |..+--.| .. |+..-+.....++-+| .
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~a-g~ilpv~~~~q~-~~v~~G~kf~i~nwd~~~~~a~v 95 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSA-GFILPVEGGPQE-FAVGCGSKFVIVNWDGVSESAKV 95 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcce-eEEEEecCCCce-EEEeecceEEEEEcccccceeee
Confidence 6777776 56666555 7889999984 343333211221122 44442111 22 3322233222233333 1
Q ss_pred -EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 82 -TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 82 -~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
+++...-.....++.|+-.+||+|+.|....+. ++ ..++ .-.+.++++-+. +++..+...+..+|||+|+
T Consensus 96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd 166 (310)
T KOG4499|consen 96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLAG-HQVELIWNCVGISNGLAWD 166 (310)
T ss_pred eeeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEeccC-CCceeeehhccCCcccccc
Confidence 121122233345788999999999999876441 11 1111 123567766664 8899999999999999999
Q ss_pred cCCCEEEEEecC
Q 030675 161 EDERFLVVCESW 172 (173)
Q Consensus 161 ~dg~~lyv~~~~ 172 (173)
.|.+.+|++|+.
T Consensus 167 ~d~K~fY~iDsl 178 (310)
T KOG4499|consen 167 SDAKKFYYIDSL 178 (310)
T ss_pred ccCcEEEEEccC
Confidence 999999999874
No 44
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=8.2e-06 Score=65.02 Aligned_cols=138 Identities=11% Similarity=0.049 Sum_probs=85.7
Q ss_pred cceEEEcCCCC-EEE-Ec--CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-c
Q 030675 12 PEDVSVDGNGV-LYT-AT--GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-V 81 (173)
Q Consensus 12 p~~l~~~~~g~-l~~-~~--~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~ 81 (173)
...++|+|+|. |.+ +. ....|+.++.+ |+...+....+... .++++|||+.|+++... ..|+.++. .+ .
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 45789999884 443 33 33468888754 55444433334445 78899999875655322 25777775 44 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
+.+.... .......++|||+ |+++... ...-.||++++++++.+.+..........+|+
T Consensus 280 ~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~S 339 (429)
T PRK03629 280 RQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVS 339 (429)
T ss_pred EEccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEEC
Confidence 4443221 2346789999997 5454321 01237999999887776665433344568899
Q ss_pred cCCCEEEEEe
Q 030675 161 EDERFLVVCE 170 (173)
Q Consensus 161 ~dg~~lyv~~ 170 (173)
|||+.++++.
T Consensus 340 pDG~~Ia~~~ 349 (429)
T PRK03629 340 SDGKFMVMVS 349 (429)
T ss_pred CCCCEEEEEE
Confidence 9999887653
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.61 E-value=6.6e-06 Score=66.06 Aligned_cols=140 Identities=16% Similarity=0.246 Sum_probs=96.4
Q ss_pred CccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CC-cE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030675 7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NG-TW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG 80 (173)
Q Consensus 7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g-~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g 80 (173)
+......+++|.|+|...++. .+..|..|+. +. .. ..+........ +++|+++|++ +++...++.++++. .|
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~-i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNL-LVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCE-EEEecCCCcEEEEeccCC
Confidence 344567789999999866666 7777888885 44 43 34445556677 9999999988 66666666666553 45
Q ss_pred --cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeeccccCc--
Q 030675 81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFA-- 154 (173)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~p-- 154 (173)
.+.+...- .....+++.++|+++++. ..++.+..||..++.. .........+
T Consensus 279 ~~~~~l~~hs-----~~is~~~f~~d~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 336 (456)
T KOG0266|consen 279 ECVRKLKGHS-----DGISGLAFSPDGNLLVSA-----------------SYDGTIRVWDLETGSKLCLKLLSGAENSAP 336 (456)
T ss_pred eEEEeeeccC-----CceEEEEECCCCCEEEEc-----------------CCCccEEEEECCCCceeeeecccCCCCCCc
Confidence 44443221 256789999999987773 2357899999998873 2333333344
Q ss_pred -ceEEEccCCCEEEEEe
Q 030675 155 -NGVALSEDERFLVVCE 170 (173)
Q Consensus 155 -~gi~~~~dg~~lyv~~ 170 (173)
.-++|+|+++++++.-
T Consensus 337 ~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 337 VTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eeEEEECCCCcEEEEec
Confidence 7899999999888764
No 46
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=8.1e-06 Score=64.98 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=82.0
Q ss_pred ceEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCC--cE
Q 030675 13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG--VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g--~~ 82 (173)
..++|+|+|+ |+++. . ...|+.++.+ |+...+....+... ..+++|||+.++++... ..++.++.++ .+
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 277 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR 277 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcE
Confidence 4678999884 55444 2 3469999864 55544433334445 78899999765554322 3577777644 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+... . .......++|||+ ++++... ...-.||.++.++++.+.+..........+|||
T Consensus 278 ~lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp 337 (427)
T PRK02889 278 RLTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP 337 (427)
T ss_pred ECCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECC
Confidence 43221 1 1234578999997 5555321 012378888887676655543222233578999
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
||++|+.+
T Consensus 338 DG~~Ia~~ 345 (427)
T PRK02889 338 DGKLLAYI 345 (427)
T ss_pred CCCEEEEE
Confidence 99988764
No 47
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=7.3e-06 Score=65.33 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=84.1
Q ss_pred cceEEEcCCCC-EEEEc---CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEcc-CC-c
Q 030675 12 PEDVSVDGNGV-LYTAT---GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSE-EG-V 81 (173)
Q Consensus 12 p~~l~~~~~g~-l~~~~---~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~-~g-~ 81 (173)
-.+++|+|+|. |+++. ....|+.++.+ |+...+....+... .++|++||+.++++. .. ..|+.++. .+ .
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence 34678889884 55544 23468899864 45444433333445 778999998645443 22 25888885 44 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
..+... . ......+++|||+ ++++... .....||.++.++++.+.+..........+|+
T Consensus 285 ~~lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~S 344 (433)
T PRK04922 285 TRLTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVS 344 (433)
T ss_pred EECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEEC
Confidence 443221 1 1234678999997 5555321 01236999998877766554333334468999
Q ss_pred cCCCEEEEEe
Q 030675 161 EDERFLVVCE 170 (173)
Q Consensus 161 ~dg~~lyv~~ 170 (173)
|||+.++++.
T Consensus 345 pDG~~Ia~~~ 354 (433)
T PRK04922 345 PDGKKIAMVH 354 (433)
T ss_pred CCCCEEEEEE
Confidence 9999988763
No 48
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=1.4e-05 Score=63.63 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=84.6
Q ss_pred ceEEEcCCCC-EEE-EcC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030675 13 EDVSVDGNGV-LYT-ATG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~-~~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~ 82 (173)
..+.|+|+|. |++ +.. ...|+.++.+ |+...+....+... ..+|++||+.++++... ..++.++.+ + .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 5678999884 544 433 3468998864 55555443334445 68899999865544322 258888854 4 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+... . .......++|||+ ++++... .....||+++.++++.+.+..........+|+|
T Consensus 281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 44321 1 1234568899996 6665321 122479999988787766653333333578999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||+.|+++.
T Consensus 341 dg~~i~~~~ 349 (430)
T PRK00178 341 DGKTLVMVH 349 (430)
T ss_pred CCCEEEEEE
Confidence 999988764
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.54 E-value=5.8e-06 Score=67.91 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=100.8
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-C-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-C-C--c
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E-G--V 81 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~-g--~ 81 (173)
.....+++..|||.+.++. .+++|..|+.. | -...+.++..... ++.|...|+. +++..-+|.++.++ . . .
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~-llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNV-LLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCE-EEEeecCCeEEeeeeccccee
Confidence 5667889999999888777 88999999854 4 4567777777778 9999999999 66665566666553 3 2 5
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALS 160 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~ 160 (173)
+++....+ .....++.||.|.+.++-.... =.|+.++.+||+..-+..+...| .+++|+
T Consensus 428 RTft~P~p----~QfscvavD~sGelV~AG~~d~----------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 428 RTFTSPEP----IQFSCVAVDPSGELVCAGAQDS----------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred eeecCCCc----eeeeEEEEcCCCCEEEeeccce----------------EEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 55543221 3567899999998766532211 27889999999887777776555 689999
Q ss_pred cCCCEEEE
Q 030675 161 EDERFLVV 168 (173)
Q Consensus 161 ~dg~~lyv 168 (173)
|++..|+-
T Consensus 488 ~~~~~LaS 495 (893)
T KOG0291|consen 488 PDGSLLAS 495 (893)
T ss_pred cccCeEEe
Confidence 99986653
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.4e-05 Score=58.21 Aligned_cols=146 Identities=10% Similarity=0.106 Sum_probs=90.6
Q ss_pred ecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc----
Q 030675 4 LGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS---- 77 (173)
Q Consensus 4 ~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~---- 77 (173)
+..|--+....|...|.+..|++. .+..|.-||.- -+.+-.....+.| -.|+||+|-++.++.....|...|
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 344544566788888977888766 66677777742 2222222333344 588999998833333333444444
Q ss_pred cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC--
Q 030675 78 EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-- 153 (173)
Q Consensus 78 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 153 (173)
..| ++.+.-.. ......++|.+++||+ |.++... +.++.+|+=+|.+..-....++
T Consensus 173 dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 173 DKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred CCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCC
Confidence 245 66654321 1224569999999997 6776533 5778888776765444443333
Q ss_pred --cceEEEccCCCEEEEEec
Q 030675 154 --ANGVALSEDERFLVVCES 171 (173)
Q Consensus 154 --p~gi~~~~dg~~lyv~~~ 171 (173)
|-+.+|+||++++..+..
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred CcceeEEECCCCcEEEEecC
Confidence 347899999998887654
No 51
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=2.4e-05 Score=62.32 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=84.5
Q ss_pred ceEEEcCCCC-EEEEc-CC--CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEE-EEeCC--CeEEEEccCC--cE
Q 030675 13 EDVSVDGNGV-LYTAT-GD--GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVII-VCDSQ--QGLLKVSEEG--VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~-~~--~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~-v~~~~--~~i~~~~~~g--~~ 82 (173)
..++|+|+|. |+++. .. ..|+.++.+ ++...+........ ...+++||+.++ +++.. ..++.++.++ .+
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC-ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 4579999984 66553 33 369999864 45555544334456 788999998644 44332 2588888644 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+.. .+ .......++|||+ ++++... .....|+.+|.++++.+.+.... .-....|+|
T Consensus 325 ~lt~--~~---~~~~~~~~SpDG~~Ia~~~~~---------------~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~~Sp 383 (429)
T PRK03629 325 RITW--EG---SQNQDADVSSDGKFMVMVSSN---------------GGQQHIAKQDLATGGVQVLTDTF-LDETPSIAP 383 (429)
T ss_pred Eeec--CC---CCccCEEECCCCCEEEEEEcc---------------CCCceEEEEECCCCCeEEeCCCC-CCCCceECC
Confidence 4422 11 2345688999997 4444321 11246888999888776665432 223578999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||+.|+.+.
T Consensus 384 DG~~i~~~s 392 (429)
T PRK03629 384 NGTMVIYSS 392 (429)
T ss_pred CCCEEEEEE
Confidence 999887754
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.9e-05 Score=63.03 Aligned_cols=136 Identities=10% Similarity=0.107 Sum_probs=83.9
Q ss_pred ceEEEcCCCC-EEEEc-C--CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEccCC--cE
Q 030675 13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSEEG--VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~~g--~~ 82 (173)
..++|+|+|. |+++. . ...||.++.++ ....+....+... ...+++||+.++++. .. ..++.++.++ .+
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 4678999885 55443 2 34699998654 4555443334445 688999998645443 22 2588888654 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+... . .......++|||+ ++++... .....|+.+|++++..+.+..+. ......|+|
T Consensus 328 ~lt~~-~----~~~~~~~~SpdG~~ia~~~~~---------------~~~~~i~~~d~~~~~~~~lt~~~-~~~~p~~sp 386 (435)
T PRK05137 328 RISFG-G----GRYSTPVWSPRGDLIAFTKQG---------------GGQFSIGVMKPDGSGERILTSGF-LVEGPTWAP 386 (435)
T ss_pred EeecC-C----CcccCeEECCCCCEEEEEEcC---------------CCceEEEEEECCCCceEeccCCC-CCCCCeECC
Confidence 44321 1 2335578999996 5554321 11247888998766655544432 456789999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||+.|+++-
T Consensus 387 DG~~i~~~~ 395 (435)
T PRK05137 387 NGRVIMFFR 395 (435)
T ss_pred CCCEEEEEE
Confidence 999887753
No 53
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.47 E-value=7.2e-06 Score=60.44 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=54.7
Q ss_pred CCcceEEEcCC-CCEEEEc-CC-CeEEEEcC--CC-cEEEe-----c---cccCccccceEEccC-CcEEEEE-eCCCeE
Q 030675 10 NHPEDVSVDGN-GVLYTAT-GD-GWIKRMHP--NG-TWEDW-----H---QVGSQSLLGLTTTKE-NNVIIVC-DSQQGL 73 (173)
Q Consensus 10 ~~p~~l~~~~~-g~l~~~~-~~-~~i~~~~~--~g-~~~~~-----~---~~~~~p~~gl~~~~~-g~l~~v~-~~~~~i 73 (173)
.+-|||++|+. ++||++- .+ ..|+.++. .+ ..... . .....+. ++++++. |++ |+. +....+
T Consensus 118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S-~l~~~p~t~~l-liLS~es~~l 195 (248)
T PF06977_consen 118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS-GLSYDPRTGHL-LILSDESRLL 195 (248)
T ss_dssp S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS----EEEEETTTTEE-EEEETTTTEE
T ss_pred cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc-ceEEcCCCCeE-EEEECCCCeE
Confidence 56899999994 6788765 32 35787764 22 22111 1 1234588 9999986 455 654 444678
Q ss_pred EEEccCC-cEEEEeccCC-----ccccCCccEEEcCCCcEEEEe
Q 030675 74 LKVSEEG-VTVLVSQFNG-----SQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 74 ~~~~~~g-~~~~~~~~~~-----~~~~~~~~l~~~~dG~~~v~~ 111 (173)
+.++.+| .........+ +.+..|.+|++|++|+||+++
T Consensus 196 ~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 196 LELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 8889888 4444433222 345689999999999999985
No 54
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=3e-05 Score=61.85 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=83.7
Q ss_pred ceEEEcCCCC-EEEE-cC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEcc-CC-cE
Q 030675 13 EDVSVDGNGV-LYTA-TG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSE-EG-VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~-~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~-~g-~~ 82 (173)
..++|+|+|. |+++ +. +..|+.++.+ |+...+........ .++|++||+.++++. .. ..++.++. .+ .+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 3678999884 6554 33 3469999864 45555433333445 678999998655543 22 24787775 34 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+.. .+ ......+++|||+ ++++... .....|+.+|.++++.+.+..+. ......|+|
T Consensus 330 ~lt~--~g---~~~~~~~~SpDG~~Ia~~~~~---------------~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~sp 388 (433)
T PRK04922 330 RLTF--QG---NYNARASVSPDGKKIAMVHGS---------------GGQYRIAVMDLSTGSVRTLTPGS-LDESPSFAP 388 (433)
T ss_pred Eeec--CC---CCccCEEECCCCCEEEEEECC---------------CCceeEEEEECCCCCeEECCCCC-CCCCceECC
Confidence 4321 11 2334689999996 5555321 01237899998878776555432 334578999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||++++++.
T Consensus 389 dG~~i~~~s 397 (433)
T PRK04922 389 NGSMVLYAT 397 (433)
T ss_pred CCCEEEEEE
Confidence 999877654
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.8e-05 Score=56.64 Aligned_cols=135 Identities=11% Similarity=0.181 Sum_probs=86.3
Q ss_pred cCCcceEEEcCCCCEEEEcC-CCeEEEEcC----CCcEEEec-c-c-cCccccceEEccCCcEEEEEeCCCeEEEEcc-C
Q 030675 9 VNHPEDVSVDGNGVLYTATG-DGWIKRMHP----NGTWEDWH-Q-V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E 79 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~----~g~~~~~~-~-~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~ 79 (173)
+.++--.|+||+|-+++... ...|.-+|. .|-.+.+. . . ...-. .|.|++||+.+.++...+.++.+|. +
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 45566789999999997763 335655652 23233321 1 1 22345 8999999999888887777888896 8
Q ss_pred C--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc-cCc-c
Q 030675 80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-YFA-N 155 (173)
Q Consensus 80 g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~p-~ 155 (173)
| ...+.. .. ...+.|-+-.+.|||.++++. ..+|+|..|+.+++.......+. ..| .
T Consensus 219 G~~~~tfs~-~~-~~~~~~~~a~ftPds~Fvl~g-----------------s~dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 219 GTVKSTFSG-YP-NAGNLPLSATFTPDSKFVLSG-----------------SDDGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred CcEeeeEee-cc-CCCCcceeEEECCCCcEEEEe-----------------cCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 8 344332 22 122456678899999977763 24589999999888655555442 222 2
Q ss_pred eEEEccCC
Q 030675 156 GVALSEDE 163 (173)
Q Consensus 156 gi~~~~dg 163 (173)
-+.|+|..
T Consensus 280 ~~~fnP~~ 287 (311)
T KOG1446|consen 280 CVRFNPRY 287 (311)
T ss_pred ccccCCce
Confidence 34455543
No 56
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=4.6e-05 Score=61.08 Aligned_cols=136 Identities=11% Similarity=0.114 Sum_probs=83.3
Q ss_pred ceEEEcCCCC-EEEE-cCCC--eEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cE
Q 030675 13 EDVSVDGNGV-LYTA-TGDG--WIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~-~~~~--~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~ 82 (173)
..++|+|+|. |+++ +.++ .|+.++.+ ++...+........ ..+|++||+.++++... ..++.++. +| .+
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT-EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 3678999885 6654 3333 59999864 45555444334455 78899999875554322 35888885 45 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+.. .+ ......+++|||+ ++++... .....|+++|+++++.+.+... .......|+|
T Consensus 344 ~Lt~--~g---~~~~~~~~SpDG~~l~~~~~~---------------~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~sp 402 (448)
T PRK04792 344 RLTF--EG---EQNLGGSITPDGRSMIMVNRT---------------NGKFNIARQDLETGAMQVLTST-RLDESPSVAP 402 (448)
T ss_pred EEec--CC---CCCcCeeECCCCCEEEEEEec---------------CCceEEEEEECCCCCeEEccCC-CCCCCceECC
Confidence 4421 11 1223468899996 5555321 1224789999988877665443 1222347999
Q ss_pred CCCEEEEEe
Q 030675 162 DERFLVVCE 170 (173)
Q Consensus 162 dg~~lyv~~ 170 (173)
||+.|+++.
T Consensus 403 dG~~I~~~~ 411 (448)
T PRK04792 403 NGTMVIYST 411 (448)
T ss_pred CCCEEEEEE
Confidence 999887754
No 57
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.41 E-value=4.4e-05 Score=60.28 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=84.8
Q ss_pred ceEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030675 13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~ 82 (173)
..++|+|+|+ |+++. . ...|+.++.. |+...+....+... .+++++||+.++++... ..++.++.. + .+
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 3467888884 54444 2 2468888854 54554443344556 78899999865655332 247777754 4 44
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+... . .......++|||+ ++++... .....||.++.++++...+..........+|+|
T Consensus 272 ~l~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp 331 (417)
T TIGR02800 272 RLTNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP 331 (417)
T ss_pred ECCCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECC
Confidence 33221 1 1123467889996 5554321 112379999988777666655555556789999
Q ss_pred CCCEEEEEec
Q 030675 162 DERFLVVCES 171 (173)
Q Consensus 162 dg~~lyv~~~ 171 (173)
||+.++++..
T Consensus 332 dg~~i~~~~~ 341 (417)
T TIGR02800 332 DGDLIAFVHR 341 (417)
T ss_pred CCCEEEEEEc
Confidence 9998887653
No 58
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=5.7e-05 Score=60.02 Aligned_cols=135 Identities=10% Similarity=0.070 Sum_probs=83.2
Q ss_pred ceEEEcCCCC--EEEEc-C--CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEccC-C-c
Q 030675 13 EDVSVDGNGV--LYTAT-G--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSEE-G-V 81 (173)
Q Consensus 13 ~~l~~~~~g~--l~~~~-~--~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~~-g-~ 81 (173)
....|.|+|+ +|++. . ...||.++. +|+...+....+... ...++|||+.++++.. . ..++.++.+ + .
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 3678899884 66555 2 456999986 455555544334334 5679999965454432 2 358888854 4 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
+.+... .+ .-....++|||+ ++++.... ....||++|.++++.+.+..... .+ ..||
T Consensus 270 ~~LT~~-~~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~S 327 (419)
T PRK04043 270 TQITNY-PG----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGK-NN-SSVS 327 (419)
T ss_pred EEcccC-CC----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCC-cC-ceEC
Confidence 444321 11 122347999995 77775321 22489999999888766654211 12 4899
Q ss_pred cCCCEEEEEe
Q 030675 161 EDERFLVVCE 170 (173)
Q Consensus 161 ~dg~~lyv~~ 170 (173)
|||+.|.++.
T Consensus 328 PDG~~Ia~~~ 337 (419)
T PRK04043 328 TYKNYIVYSS 337 (419)
T ss_pred CCCCEEEEEE
Confidence 9999776653
No 59
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.40 E-value=1.7e-05 Score=61.97 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=71.7
Q ss_pred EEEEc-CCCeEEEEcCC-CcEEEeccccCc-cccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCC
Q 030675 23 LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQ-SLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFA 96 (173)
Q Consensus 23 l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~-p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~ 96 (173)
+||+. ..+.|..+|.+ .+.....+.+.. +. ++++++||+.+|+++....+-.+|. ++ ...+. .+ ..|
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~-~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~ 80 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHA-GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNP 80 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEE-EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEE
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCcee-EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCc
Confidence 34666 67889999854 444443344444 45 7889999999899987667777885 44 33432 22 468
Q ss_pred ccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--------cCcceEEEccCCCEEE
Q 030675 97 NDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------YFANGVALSEDERFLV 167 (173)
Q Consensus 97 ~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~~p~gi~~~~dg~~ly 167 (173)
.++++++||+ +|+++.. .+.+..+|.++.++....... +.+.+|..+|.....+
T Consensus 81 ~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp EEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred ceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 9999999997 6666532 258888998877654433221 1234666677766544
Q ss_pred EE
Q 030675 168 VC 169 (173)
Q Consensus 168 v~ 169 (173)
++
T Consensus 144 v~ 145 (369)
T PF02239_consen 144 VN 145 (369)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 60
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=6.2e-05 Score=60.02 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=54.8
Q ss_pred cceEEEcCCCC-EEEEc---CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccC-C-c
Q 030675 12 PEDVSVDGNGV-LYTAT---GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEE-G-V 81 (173)
Q Consensus 12 p~~l~~~~~g~-l~~~~---~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~-g-~ 81 (173)
...++|+|+|. |.++. .+..|+.++.. |+...+....+... .++|+|||+.|+++.... .|+.++.+ + .
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 46689999884 44433 23468999864 44444433333445 788999998656553222 46777754 4 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
..+... . .......++|||+ ++++
T Consensus 285 ~~lt~~-~----~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 285 SQLTSG-A----GNNTEPSWSPDGQSILFT 309 (429)
T ss_pred EeeccC-C----CCcCCEEECCCCCEEEEE
Confidence 443221 1 1345678888886 5554
No 61
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.33 E-value=7.3e-05 Score=54.36 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=88.2
Q ss_pred cceEEEcCC-CCEEEEcCCCeEEEEcCCCc--EEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEE
Q 030675 12 PEDVSVDGN-GVLYTATGDGWIKRMHPNGT--WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVL 84 (173)
Q Consensus 12 p~~l~~~~~-g~l~~~~~~~~i~~~~~~g~--~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~ 84 (173)
...++.+|+ +.|++++..|.|+.||.-.. .....++ ..... .+++.+||..+..++.....+..+. .+ .+.+
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~-sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ-SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee-eEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence 356888895 68999999999999995332 2223333 33445 8999999999554544444555552 22 3333
Q ss_pred EeccCCc-cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeecc-ccCcceEEEcc
Q 030675 85 VSQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-LYFANGVALSE 161 (173)
Q Consensus 85 ~~~~~~~-~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~p~gi~~~~ 161 (173)
.....-+ .-.+.-...++||++.++|.++ +..+..++.++- +.+...++ -+.-=+.+||.
T Consensus 206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 206 EPVHKFQAHNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred eEhhheecccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence 2211100 0124455688999998888654 356777776654 45555544 34555899999
Q ss_pred CCCEEEEEec
Q 030675 162 DERFLVVCES 171 (173)
Q Consensus 162 dg~~lyv~~~ 171 (173)
|+++|+-+.+
T Consensus 269 dg~YlvTass 278 (311)
T KOG0315|consen 269 DGEYLVTASS 278 (311)
T ss_pred CccEEEecCC
Confidence 9998876543
No 62
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.33 E-value=5.4e-05 Score=57.00 Aligned_cols=136 Identities=20% Similarity=0.247 Sum_probs=84.4
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-ec--------ccc-CccccceEEccCCcEEEEEeCCC----eEEEE
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH--------QVG-SQSLLGLTTTKENNVIIVCDSQQ----GLLKV 76 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~--------~~~-~~p~~gl~~~~~g~l~~v~~~~~----~i~~~ 76 (173)
...+++ .++.+||.. .-.++..++++-+... |. ++- =+.+ |||+ .+|+-.||+.-+. .-++-
T Consensus 105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~-~~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMAL-DDGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceee-eCCeEEEEEEeeccCCcccccc
Confidence 556777 456677655 4566777776554332 21 111 1356 9999 5666668765221 12222
Q ss_pred cc-CCcEEEEeccCC----ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc
Q 030675 77 SE-EGVTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL 151 (173)
Q Consensus 77 ~~-~g~~~~~~~~~~----~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 151 (173)
.. +| ..+.+...+ ..+..|++-... +|++|+.|.. .+.+.++|+++|+.+.++.-.
T Consensus 182 ~~~~g-G~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vp 242 (335)
T TIGR03032 182 GRRDG-GCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLP 242 (335)
T ss_pred cccCC-eEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECC
Confidence 21 22 001111111 113467777777 6899999854 379999999989999998888
Q ss_pred cCcceEEEccCCCEEEEEec
Q 030675 152 YFANGVALSEDERFLVVCES 171 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~~~ 171 (173)
..|.||+|. |++++|+-+
T Consensus 243 G~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 243 GFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCCccccee--CCEEEEEec
Confidence 899999997 888888643
No 63
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00012 Score=58.23 Aligned_cols=135 Identities=11% Similarity=0.079 Sum_probs=82.8
Q ss_pred eEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEcc-CC-cEE
Q 030675 14 DVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSE-EG-VTV 83 (173)
Q Consensus 14 ~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~-~g-~~~ 83 (173)
.++|+|+|. |+++. . ...|+.++.+ +....+........ ...|++||+.++++.. . ..++.++. +| .+.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT-EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 588999884 65443 3 3369999865 44554433333445 6789999986555432 2 25777775 45 444
Q ss_pred EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030675 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d 162 (173)
+.. .+ .......++|||+ ++++... .....|+.+|+++++.+.+... .......|+||
T Consensus 326 lt~--~~---~~~~~~~~Spdg~~i~~~~~~---------------~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spd 384 (430)
T PRK00178 326 VTF--VG---NYNARPRLSADGKTLVMVHRQ---------------DGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPN 384 (430)
T ss_pred eec--CC---CCccceEECCCCCEEEEEEcc---------------CCceEEEEEECCCCCEEEccCC-CCCCCceECCC
Confidence 431 11 1223568899996 5555321 0123689999988877666543 22335689999
Q ss_pred CCEEEEEe
Q 030675 163 ERFLVVCE 170 (173)
Q Consensus 163 g~~lyv~~ 170 (173)
|+.++++.
T Consensus 385 g~~i~~~~ 392 (430)
T PRK00178 385 GTMLIYAT 392 (430)
T ss_pred CCEEEEEE
Confidence 99888764
No 64
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.31 E-value=9.9e-05 Score=58.62 Aligned_cols=141 Identities=18% Similarity=0.221 Sum_probs=94.8
Q ss_pred ccCCcceEEEcCCCCEEEEcCCCeEEEEcCCC-cE--EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEE
Q 030675 8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TW--EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTV 83 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~--~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~ 83 (173)
--+...+++....+.+|....+..+.+.+..+ .. ....+.+..|. |++..+++.+++++... .++.+.. .+...
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~-~iv~l~~~~~~~~ 439 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACIS-DIVLLQDQTKVSS 439 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecC-cEEEEecCCccee
Confidence 34556778887778999888888888887432 22 12235577899 99999998775665544 4666664 44333
Q ss_pred EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--E-EeeccccCcceEEEc
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--S-LVLDGLYFANGVALS 160 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~p~gi~~~ 160 (173)
.... ..+..++++|++...+.- ..++.|+.|...+++. + +.......+..+++|
T Consensus 440 ~~~~------y~~s~vAv~~~~~~vaVG-----------------G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 440 IPIG------YESSAVAVSPDGSEVAVG-----------------GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred eccc------cccceEEEcCCCCEEEEe-----------------cccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 2211 357889999999754441 2346777777765442 2 233445667899999
Q ss_pred cCCCEEEEEecCC
Q 030675 161 EDERFLVVCESWK 173 (173)
Q Consensus 161 ~dg~~lyv~~~~~ 173 (173)
||+.+|.++|..|
T Consensus 497 pd~~yla~~Da~r 509 (603)
T KOG0318|consen 497 PDGAYLAAGDASR 509 (603)
T ss_pred CCCcEEEEeccCC
Confidence 9999999998775
No 65
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=8.5e-05 Score=59.21 Aligned_cols=126 Identities=10% Similarity=0.077 Sum_probs=76.0
Q ss_pred EEEEcC--CCeEEEEcCCCcE-EEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cEEEEeccCCcccc
Q 030675 23 LYTATG--DGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGSQLR 94 (173)
Q Consensus 23 l~~~~~--~~~i~~~~~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~~~~ 94 (173)
.|++.. ...|+.+|.+|.. ..+........ ..+++|||+.++++... ..++.++. .| ...+. ...+
T Consensus 167 ayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~g---- 240 (427)
T PRK02889 167 AYVIKTGNRYQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NFKG---- 240 (427)
T ss_pred EEEEccCCccEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-cCCC----
Confidence 445542 3468888877753 33323333345 78899999765554432 24777775 45 44443 2222
Q ss_pred CCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 95 FANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 95 ~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
.....+++|||+ ++++... .....||.+|.+++..+.+..........+|+|||+.|+++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~ 301 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFT 301 (427)
T ss_pred CccceEECCCCCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEE
Confidence 334689999996 5554221 12247999998877766665443344567899999987754
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.29 E-value=0.00018 Score=52.19 Aligned_cols=134 Identities=21% Similarity=0.238 Sum_probs=85.2
Q ss_pred ceEEEcCCC-CEEEEcCCCeEEEEcCCC--cEEEeccccCccccceEEccCCcEEEEEeC-CCeEEEEccC-C--cEEEE
Q 030675 13 EDVSVDGNG-VLYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVSEE-G--VTVLV 85 (173)
Q Consensus 13 ~~l~~~~~g-~l~~~~~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~~~i~~~~~~-g--~~~~~ 85 (173)
..+.+.+++ .++++..++.|..|+... ....+........ .+.+++++++ +++.. ...+..++.. + ...+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRI-LSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCE-EEEecCCCeEEEEECCCcEEEEEec
Confidence 478888887 555666788999998654 2333433344567 8999999888 44444 4455555643 4 22222
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDER 164 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~ 164 (173)
.. ...+..+.++|++.++++.. .++.+..+|..+++....... ......++|+|+++
T Consensus 133 -~~----~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 190 (289)
T cd00200 133 -GH----TDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190 (289)
T ss_pred -cC----CCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcC
Confidence 11 13567899999887766632 236788888875554333332 33567899999998
Q ss_pred EEEEEe
Q 030675 165 FLVVCE 170 (173)
Q Consensus 165 ~lyv~~ 170 (173)
.++++.
T Consensus 191 ~l~~~~ 196 (289)
T cd00200 191 KLLSSS 196 (289)
T ss_pred EEEEec
Confidence 777764
No 67
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.27 E-value=0.00014 Score=58.02 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=42.3
Q ss_pred cceEEEcCCCCEEEEc--C-------------------------------CCeEEEEcCCCcE------------EEecc
Q 030675 12 PEDVSVDGNGVLYTAT--G-------------------------------DGWIKRMHPNGTW------------EDWHQ 46 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~--~-------------------------------~~~i~~~~~~g~~------------~~~~~ 46 (173)
-..|+|+|+|.||++. . .|+|+|+++||+. +.+.-
T Consensus 148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~ 227 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY 227 (454)
T ss_pred CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE
Confidence 4568999999999855 2 1368899888753 23333
Q ss_pred ccCccccceEEccCCcEEEEEeCC
Q 030675 47 VGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 47 ~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
....|. |++|+++|++ |+++.+
T Consensus 228 G~RNp~-Gla~dp~G~L-w~~e~G 249 (454)
T TIGR03606 228 GHRNPQ-GLAFTPDGTL-YASEQG 249 (454)
T ss_pred eccccc-eeEECCCCCE-EEEecC
Confidence 445799 9999999998 998855
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.26 E-value=0.00018 Score=52.30 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV 83 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~ 83 (173)
....+++++|++.++++. .++.|..++.. ++. ..+........ .+.++++++.++++.....+..++. .+ ...
T Consensus 136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN-SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc-eEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 346789999987766655 48889999854 443 23333334567 8999999977566655444555554 33 222
Q ss_pred EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED 162 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d 162 (173)
+. .. ...+..+.+++++.++++.. .++.+..++..+++....... ...+..++|+++
T Consensus 215 ~~-~~----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (289)
T cd00200 215 LR-GH----ENGVNSVAFSPDGYLLASGS-----------------EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272 (289)
T ss_pred hh-hc----CCceEEEEEcCCCcEEEEEc-----------------CCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence 21 11 12567799999987777642 236888888876554443332 345678999999
Q ss_pred CCEEEEEe
Q 030675 163 ERFLVVCE 170 (173)
Q Consensus 163 g~~lyv~~ 170 (173)
++.|+++.
T Consensus 273 ~~~l~~~~ 280 (289)
T cd00200 273 GKRLASGS 280 (289)
T ss_pred CCEEEEec
Confidence 88887754
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00013 Score=59.94 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=84.0
Q ss_pred cCCcceEEEcC--CC-CEEEEc-CCCeEEEEcCCC----cEEEeccccCccccceEEc-------------------cCC
Q 030675 9 VNHPEDVSVDG--NG-VLYTAT-GDGWIKRMHPNG----TWEDWHQVGSQSLLGLTTT-------------------KEN 61 (173)
Q Consensus 9 ~~~p~~l~~~~--~g-~l~~~~-~~~~i~~~~~~g----~~~~~~~~~~~p~~gl~~~-------------------~~g 61 (173)
+..|.-=..+. +| .||+-| .+.+|-|++.+- ++..+ +.....+ |+.+. +||
T Consensus 127 ~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~i-Pn~~~~H-g~~~~~~p~t~yv~~~~e~~~PlpnDG 204 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITEL-PNVQGIH-GLRPQKIPRTGYVFCNGEFRIPLPNDG 204 (635)
T ss_pred cCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeC-CCccCcc-ccCccccCCccEEEeCcccccccCCCC
Confidence 34444444444 67 477777 788999888653 23332 2222334 44443 344
Q ss_pred cEEEEEeCCCeEEE-EccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcc---------cce--------
Q 030675 62 NVIIVCDSQQGLLK-VSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EYY-------- 122 (173)
Q Consensus 62 ~l~~v~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~---------~~~-------- 122 (173)
+.++....+.+++. +|.+-.+...+..-+ ..|+.+.++++|. +|+++.....+.. ++.
T Consensus 205 k~l~~~~ey~~~vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~i 281 (635)
T PRK02888 205 KDLDDPKKYRSLFTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARI 281 (635)
T ss_pred CEeecccceeEEEEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHH
Confidence 44333332323222 332221111111111 3789999999986 6777532211100 000
Q ss_pred eeeccc-----CCCceEEEEcCCC-----CeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 123 LDLVSG-----EPHGVLLKYDPST-----NQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 123 ~~~~~~-----~~~~~v~~~d~~~-----~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
...... -..++|..+|..+ .++.........|.|+++||||+++|++.-
T Consensus 282 ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 282 EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence 000111 0235788889876 345555566789999999999999999864
No 70
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.00014 Score=58.05 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEE-EeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcC
Q 030675 30 GWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEAS 103 (173)
Q Consensus 30 ~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~ 103 (173)
..|+.+|.+|.-. .+........ .++++|||+.++++... ..++.++. .| .+.+. ...+ ....++++|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g----~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRG----HNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCC----ccCceeECC
Confidence 4677788777533 2222233345 88999999765544322 24777775 45 44443 2222 234689999
Q ss_pred CCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 104 dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
||+ ++++... ...-.||.+|.+++..+.+..........+|+|||+.|+++
T Consensus 258 DG~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~ 309 (429)
T PRK01742 258 DGSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFT 309 (429)
T ss_pred CCCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEE
Confidence 997 5554211 01136899998877776666554455679999999987764
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.22 E-value=0.00028 Score=55.70 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=83.5
Q ss_pred cceEEEcCCCC-EEEEc-C--CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEccCC--c
Q 030675 12 PEDVSVDGNGV-LYTAT-G--DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSEEG--V 81 (173)
Q Consensus 12 p~~l~~~~~g~-l~~~~-~--~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~~g--~ 81 (173)
...++|.|+|. |+++. . ...|+.++.++ ....+........ ...++++|+.++++.. . ..++.++.++ .
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCC-CEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 34578999884 66543 2 34699998654 4444433333334 6678999876555432 2 2578777544 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
..+... + .....+.++|||+ ++++... ....+|+.+|.+++..+.+... ......+|+
T Consensus 315 ~~l~~~--~---~~~~~~~~spdg~~i~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~s 373 (417)
T TIGR02800 315 RRLTFR--G---GYNASPSWSPDGDLIAFVHRE---------------GGGFNIAVMDLDGGGERVLTDT-GLDESPSFA 373 (417)
T ss_pred EEeecC--C---CCccCeEECCCCCEEEEEEcc---------------CCceEEEEEeCCCCCeEEccCC-CCCCCceEC
Confidence 443321 1 2345678999997 5555322 1224899999987766555443 233456899
Q ss_pred cCCCEEEEEec
Q 030675 161 EDERFLVVCES 171 (173)
Q Consensus 161 ~dg~~lyv~~~ 171 (173)
|||+.|+++..
T Consensus 374 pdg~~l~~~~~ 384 (417)
T TIGR02800 374 PNGRMILYATT 384 (417)
T ss_pred CCCCEEEEEEe
Confidence 99998877643
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.21 E-value=0.00011 Score=58.30 Aligned_cols=135 Identities=16% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEEEe
Q 030675 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS 86 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~~~ 86 (173)
.+|-++++.++|.+-+......|..+...+..... +....+. ++++++++..+.|. ...+-+.+. ..| ......
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~-~~~y~~s-~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI-PIGYESS-AVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceee-ccccccc-eEEEcCCCCEEEEe-cccceEEEEEecCCcccceee
Confidence 46889999998744433333446666433344433 3555677 99999999883333 333333333 233 222222
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe--eccccCcceEEEccCCC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDER 164 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~p~gi~~~~dg~ 164 (173)
..+.. .-+..++++|||.++++.. .++.+..||..+++.... +-.-...+.|+|+|+.+
T Consensus 483 ~~~h~--a~iT~vaySpd~~yla~~D-----------------a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 483 LLEHR--AAITDVAYSPDGAYLAAGD-----------------ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred eeccc--CCceEEEECCCCcEEEEec-----------------cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence 11111 3578899999998777532 336888899887765322 22346678999999986
Q ss_pred EE
Q 030675 165 FL 166 (173)
Q Consensus 165 ~l 166 (173)
.+
T Consensus 544 ~v 545 (603)
T KOG0318|consen 544 LV 545 (603)
T ss_pred EE
Confidence 43
No 73
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.18 E-value=0.00031 Score=53.08 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=84.8
Q ss_pred CCcceEEEcC-C-----CCEEEEc-CCCeEEEEcC-CCcEEEecc--------------------ccCccccceEEcc--
Q 030675 10 NHPEDVSVDG-N-----GVLYTAT-GDGWIKRMHP-NGTWEDWHQ--------------------VGSQSLLGLTTTK-- 59 (173)
Q Consensus 10 ~~p~~l~~~~-~-----g~l~~~~-~~~~i~~~~~-~g~~~~~~~--------------------~~~~p~~gl~~~~-- 59 (173)
.....+++|. + +.+|++| ..+.|..+|. +|+..++.. ...... |++.++
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~-gial~~~~ 139 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIF-GIALSPIS 139 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEE-EEEE-TTS
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCcc-ccccCCCC
Confidence 3456688886 2 5799999 5567888884 454332211 011245 777765
Q ss_pred -CCcEEEEEeCC-CeEEEEc----cCC---cEE-EEecc--CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecc
Q 030675 60 -ENNVIIVCDSQ-QGLLKVS----EEG---VTV-LVSQF--NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS 127 (173)
Q Consensus 60 -~g~l~~v~~~~-~~i~~~~----~~g---~~~-~~~~~--~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~ 127 (173)
+|+.||+.... ..++++. .+. ... +...+ -|.+.....++++|++|.+|+++..
T Consensus 140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~-------------- 205 (287)
T PF03022_consen 140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE-------------- 205 (287)
T ss_dssp TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC--------------
T ss_pred CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC--------------
Confidence 77888988754 4678875 122 111 00000 0111135689999999999999743
Q ss_pred cCCCceEEEEcCCC----CeeEEeec--c-ccCcceEEEcc--CCCEEEEE
Q 030675 128 GEPHGVLLKYDPST----NQTSLVLD--G-LYFANGVALSE--DERFLVVC 169 (173)
Q Consensus 128 ~~~~~~v~~~d~~~----~~~~~~~~--~-~~~p~gi~~~~--dg~~lyv~ 169 (173)
.++|.++++++ ...+.++. . +.+|.++.+++ +|. ||+.
T Consensus 206 ---~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~ 252 (287)
T PF03022_consen 206 ---QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVL 252 (287)
T ss_dssp ---CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEE
T ss_pred ---CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEE
Confidence 36999999985 24444543 2 78999999999 774 7775
No 74
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.15 E-value=0.00021 Score=56.45 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=81.4
Q ss_pred EEEcCCC-eEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEeccCCccccCCccE
Q 030675 24 YTATGDG-WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDV 99 (173)
Q Consensus 24 ~~~~~~~-~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l 99 (173)
.+++.+| .+-.++.+|. ..++....+... .+.++++|+.+++++....++.++ ++| .+.+-.... .-..++
T Consensus 375 vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItdf 449 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDF 449 (668)
T ss_pred EEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEEE
Confidence 3344333 6666776554 345555667777 899999999767887767899999 466 554432222 356788
Q ss_pred EEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 100 IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 100 ~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
+++|+++++.=..- + +--...|-.+|.+++++-.+.+.-..-..=+|+||+++||.-
T Consensus 450 ~~~~nsr~iAYafP-----~--------gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 450 DWHPNSRWIAYAFP-----E--------GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEcCCceeEEEecC-----c--------ceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 99999875442110 0 011246677788777766565544444456899999999973
No 75
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.15 E-value=0.00039 Score=51.68 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=89.4
Q ss_pred CcceEEEcCCCCEEEEcCCCeEEEEcC-CCc-EEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEE-c-cCC--cEE
Q 030675 11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKV-S-EEG--VTV 83 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~-~-~~g--~~~ 83 (173)
...+-.+.++++|..+..+.....||. .|+ ...+..+.+... +|.+.| ++++ ||+..-+...++ | ..+ .+.
T Consensus 147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~nt-FvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNT-FVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCe-EEecccccceeeeeccCcceeEe
Confidence 344555666888888777888888884 564 445666677778 899999 8999 887654443333 4 355 666
Q ss_pred EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeecc--ccCcceEEEc
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG--LYFANGVALS 160 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~--~~~p~gi~~~ 160 (173)
+.... .-.|.+.+.|+|.-|++- +.++..-.||.... ++...... ....++++||
T Consensus 225 F~ghe-----sDINsv~ffP~G~afatG-----------------SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 225 FEGHE-----SDINSVRFFPSGDAFATG-----------------SDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ecccc-----cccceEEEccCCCeeeec-----------------CCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 64332 246889999999888872 23455555665533 34333322 3445789999
Q ss_pred cCCCEEEEE
Q 030675 161 EDERFLVVC 169 (173)
Q Consensus 161 ~dg~~lyv~ 169 (173)
..||.||..
T Consensus 283 ~SGRlLfag 291 (343)
T KOG0286|consen 283 KSGRLLFAG 291 (343)
T ss_pred ccccEEEee
Confidence 999988873
No 76
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.14 E-value=0.00041 Score=49.43 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred eEEEEcCCC-cEEEecc-ccCccccceEEccCCcEEEEEeCC--CeEEEEccCC--cEEEEeccCCccccCCccEEEcCC
Q 030675 31 WIKRMHPNG-TWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASD 104 (173)
Q Consensus 31 ~i~~~~~~g-~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d 104 (173)
.|++++..+ ....+.. ..+... .++++|+|+.+.++... ..+...+..+ ...+. . ...|.+.++|+
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~----~---~~~n~i~wsP~ 111 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG----T---QPRNTISWSPD 111 (194)
T ss_pred EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec----C---CCceEEEECCC
Confidence 466775433 3333222 223366 99999999875555332 2344445455 22221 1 35688999999
Q ss_pred CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 105 G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
|++++.... +...|.|..+|..+.+...-. .......++|||||+++..+.+
T Consensus 112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred CCEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence 987665321 112367888998754432222 2344678999999999887765
No 77
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00014 Score=51.80 Aligned_cols=100 Identities=20% Similarity=0.292 Sum_probs=69.8
Q ss_pred CccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~ 125 (173)
+... ||+.|.+ ++ +.++....+.+.|+.- ...+....++.|....|.+..- ||.+|.--.
T Consensus 131 GeGW-gLt~d~~-~L-imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw------------- 193 (262)
T COG3823 131 GEGW-GLTSDDK-NL-IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVW------------- 193 (262)
T ss_pred Ccce-eeecCCc-ce-EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeee-------------
Confidence 3455 6665444 44 7777666677777633 4455555678888888999876 787776422
Q ss_pred cccCCCceEEEEcCCCCeeEEeec-------------cccCcceEEEccCCCEEEEE
Q 030675 126 VSGEPHGVLLKYDPSTNQTSLVLD-------------GLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 126 ~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~p~gi~~~~dg~~lyv~ 169 (173)
.+.+|.|++|++|++..+.+ ....+||||+.|++..+|++
T Consensus 194 ----~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 194 ----QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred ----eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence 12489999999998876643 13467999999999889986
No 78
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.00016 Score=59.42 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=44.4
Q ss_pred EEeccccCccccceEEccCCcEEEEEeCCCe-EEEEccCC-cE-----------EEEeccCCccccCCccEEEcCCCcEE
Q 030675 42 EDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEG-VT-----------VLVSQFNGSQLRFANDVIEASDGSLY 108 (173)
Q Consensus 42 ~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g-~~-----------~~~~~~~~~~~~~~~~l~~~~dG~~~ 108 (173)
....+.+..|+ |+.++|||+.+|+++..+. +-.+|... .. .+....-| ..|-..++|++|+.|
T Consensus 314 ~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~ay 389 (635)
T PRK02888 314 TRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNAY 389 (635)
T ss_pred EEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCEE
Confidence 34456677899 9999999999888876543 44444222 11 12222223 478899999999999
Q ss_pred EEe
Q 030675 109 FTV 111 (173)
Q Consensus 109 v~~ 111 (173)
++-
T Consensus 390 tsl 392 (635)
T PRK02888 390 TTL 392 (635)
T ss_pred EeE
Confidence 984
No 79
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00078 Score=53.80 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=79.3
Q ss_pred ceEEEcCCC-CEEEEc-CCC--eEEE--EcCC----CcEEEeccc-cCccccceEEccCCcEEE-EEeCC--CeEEEEcc
Q 030675 13 EDVSVDGNG-VLYTAT-GDG--WIKR--MHPN----GTWEDWHQV-GSQSLLGLTTTKENNVII-VCDSQ--QGLLKVSE 78 (173)
Q Consensus 13 ~~l~~~~~g-~l~~~~-~~~--~i~~--~~~~----g~~~~~~~~-~~~p~~gl~~~~~g~l~~-v~~~~--~~i~~~~~ 78 (173)
..++|+||| .|.++. ..+ .++. ++.+ |....+... .+... ..+++|||+.++ +++.. ..++.++.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~-~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG-NPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 357899988 455443 222 4544 3422 233333222 23344 678999998534 44332 24666653
Q ss_pred C--C--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030675 79 E--G--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF 153 (173)
Q Consensus 79 ~--g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 153 (173)
+ + .+.+.. .. .......++|||+ ++++... .....|+.+|+++++.+.+......
T Consensus 313 ~~~g~~~~~lt~-~~----~~~~~p~wSPDG~~Laf~~~~---------------~g~~~I~v~dl~~g~~~~Lt~~~~~ 372 (428)
T PRK01029 313 DPEGQSPRLLTK-KY----RNSSCPAWSPDGKKIAFCSVI---------------KGVRQICVYDLATGRDYQLTTSPEN 372 (428)
T ss_pred cccccceEEecc-CC----CCccceeECCCCCEEEEEEcC---------------CCCcEEEEEECCCCCeEEccCCCCC
Confidence 2 2 232221 11 2335678999997 5554321 1124799999998888777655444
Q ss_pred cceEEEccCCCEEEEEe
Q 030675 154 ANGVALSEDERFLVVCE 170 (173)
Q Consensus 154 p~gi~~~~dg~~lyv~~ 170 (173)
.....|+|||+.|+++.
T Consensus 373 ~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 373 KESPSWAIDSLHLVYSA 389 (428)
T ss_pred ccceEECCCCCEEEEEE
Confidence 56789999999888753
No 80
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.09 E-value=0.00039 Score=51.30 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=89.0
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EEEeccc--cCccccceEEccCC-cEEEEEeCCCeEEEEcc-CCcE
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WEDWHQV--GSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSE-EGVT 82 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~--~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~~-~g~~ 82 (173)
-..--+++++++.+-.++. .+..|.-|+.-|. ..++.+. ..+.. ++.|+|+. +..++....++.+++.. .+.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 3445678888877555554 6677777775443 3334333 45788 99999985 44245555566777664 5422
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d 162 (173)
. ...+.|.. ...+.++++|||.+.++- ..+|.++.+|.+.++...........+.++|+|.
T Consensus 184 l-~~~~~gh~-~~v~t~~vSpDGslcasG-----------------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 184 L-RTTFIGHS-GYVNTVTVSPDGSLCASG-----------------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN 244 (315)
T ss_pred h-hhcccccc-ccEEEEEECCCCCEEecC-----------------CCCceEEEEEccCCceeEeccCCCeEeeEEecCC
Confidence 1 11122221 467999999999988762 2457899999887776556666788899999997
Q ss_pred C
Q 030675 163 E 163 (173)
Q Consensus 163 g 163 (173)
.
T Consensus 245 r 245 (315)
T KOG0279|consen 245 R 245 (315)
T ss_pred c
Confidence 4
No 81
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.05 E-value=0.0014 Score=49.61 Aligned_cols=97 Identities=15% Similarity=0.258 Sum_probs=63.7
Q ss_pred EEEcCCC-CEEEEc-----CCCeEEEEcCCCcEE---EeccccCccccceEEccCCcEEEEEeCC---C-----------
Q 030675 15 VSVDGNG-VLYTAT-----GDGWIKRMHPNGTWE---DWHQVGSQSLLGLTTTKENNVIIVCDSQ---Q----------- 71 (173)
Q Consensus 15 l~~~~~g-~l~~~~-----~~~~i~~~~~~g~~~---~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~----------- 71 (173)
-+|+++| .||++. ..|.|-.||...... .|...+-.|+ -|.+.+||+.|+|++.+ +
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4677888 466665 346788888764433 4444455799 99999999777999743 1
Q ss_pred ----eEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 72 ----GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 72 ----~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
.+.++| .+| +++.. ..+.....+...|+++++|.++++...
T Consensus 135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY 182 (305)
T ss_pred hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence 256665 356 33322 111222357888999999999998643
No 82
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.00073 Score=53.79 Aligned_cols=128 Identities=15% Similarity=0.097 Sum_probs=77.2
Q ss_pred CEEEEc-C---CCeEEEEcCCCcEEEeccccCccccceEEccCCc-EEEEEeCC---CeEEEEcc-CC-cEEEEeccCCc
Q 030675 22 VLYTAT-G---DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGS 91 (173)
Q Consensus 22 ~l~~~~-~---~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~ 91 (173)
.+||+. . ...|+..|.||.-.+.....+... ...++|||+ ++|++... ..|+.++. .| .+.+.. ..+
T Consensus 157 ~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g- 233 (419)
T PRK04043 157 KVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG- 233 (419)
T ss_pred EEEEEEccCCCcceEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-
Confidence 456554 2 346788888886433222233333 788999997 34654322 35888885 55 555543 222
Q ss_pred cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 92 QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 92 ~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
......++|||+ +.++... ..+..||.++.++++.+.+......-..-.|+|||+.||++.
T Consensus 234 ---~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~S 295 (419)
T PRK04043 234 ---MLVVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVS 295 (419)
T ss_pred ---cEEeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEE
Confidence 122356899995 6665322 123589999988887776654432233457999999888763
No 83
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.00063 Score=51.20 Aligned_cols=145 Identities=18% Similarity=0.158 Sum_probs=86.5
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEc-cCC-cEEEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLV 85 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~-~~g-~~~~~ 85 (173)
-..+|+|+++|+..++. .+..|.-|| .+|....-.-...... +..++| +.+..+++.....-+.++ .++ ...+.
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc-eeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence 35679999999776655 777888888 4676432111122233 666665 445535554443333333 335 33333
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCcceEEEccCC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE 163 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p~gi~~~~dg 163 (173)
..-++..-..+....+++.|+..++ ++..|.+..++.++-++.....- ......|.++..|
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIit-----------------GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIIT-----------------GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG 208 (405)
T ss_pred CCCccccccccccccccCCCCEEEE-----------------ecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence 3333333345566678899975444 22448999999987655433322 3566789999999
Q ss_pred CEEEEEecCC
Q 030675 164 RFLVVCESWK 173 (173)
Q Consensus 164 ~~lyv~~~~~ 173 (173)
+++.+..+.|
T Consensus 209 ~~liiNtsDR 218 (405)
T KOG1273|consen 209 RFLIINTSDR 218 (405)
T ss_pred cEEEEecCCc
Confidence 9888776654
No 84
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.0005 Score=55.33 Aligned_cols=137 Identities=19% Similarity=0.252 Sum_probs=89.0
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-c--EEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc-c--CC-
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-T--WED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E--EG- 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~--~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~--~g- 80 (173)
..-.++.+.++|...++. .++.+..+...+ + ... ......... .++|++++++ .++...+..+++. . ++
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~-l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSY-LLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcE-EEEecCCceEEEeeccCCCe
Confidence 344557888888776555 566666665432 2 111 112233456 9999999998 6665555555554 2 23
Q ss_pred -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEE
Q 030675 81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA 158 (173)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~ 158 (173)
...+... . ...+.++++|+|+++++- ..++.|..+|..++++.....+ -...++++
T Consensus 238 ~~~~l~gH-~----~~v~~~~f~p~g~~i~Sg-----------------s~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 238 NLKTLKGH-S----TYVTSVAFSPDGNLLVSG-----------------SDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred EEEEecCC-C----CceEEEEecCCCCEEEEe-----------------cCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 3333221 1 356899999999877763 3457899999998877666655 45668899
Q ss_pred EccCCCEEEEEe
Q 030675 159 LSEDERFLVVCE 170 (173)
Q Consensus 159 ~~~dg~~lyv~~ 170 (173)
|++|++.|+.+.
T Consensus 296 f~~d~~~l~s~s 307 (456)
T KOG0266|consen 296 FSPDGNLLVSAS 307 (456)
T ss_pred ECCCCCEEEEcC
Confidence 999999887763
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.01 E-value=0.00017 Score=61.25 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=67.3
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cEEE
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VTVL 84 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~~~ 84 (173)
-..++|+|++.++++- .++.|..|+. +.+ +.++..+.+.+. |+.|||-|++ +.+...++.++++. .| ...+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCe-eeeecCCceEEEEEcccceeeEee
Confidence 4568999999888776 7889999983 333 344556677889 9999999998 77777777666653 34 3333
Q ss_pred EeccCCcc-ccCCccEEEcCCCcEEEEeCcC
Q 030675 85 VSQFNGSQ-LRFANDVIEASDGSLYFTVSST 114 (173)
Q Consensus 85 ~~~~~~~~-~~~~~~l~~~~dG~~~v~~~~~ 114 (173)
...++.-+ -.....+..+|||.++++-.+.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 22222111 1244567788999877765443
No 86
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.98 E-value=7.5e-05 Score=57.72 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=90.1
Q ss_pred ecCCccCCcceEEEcCC--C-CEEEEcCCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 4 LGEGIVNHPEDVSVDGN--G-VLYTATGDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 4 ~~~~~~~~p~~l~~~~~--g-~l~~~~~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
...|-.....++.|+|. + .|-.+..+|.+.-|+.++. +..+........ -++|+|+|++ ..+...+..+++++
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~-L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKF-LGTASFDSTWRLWD 289 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCce-eeecccccchhhcc
Confidence 33444566778899984 4 4444557777666665442 333434455667 8899999999 66655666777664
Q ss_pred --CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcc
Q 030675 79 --EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFAN 155 (173)
Q Consensus 79 --~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~ 155 (173)
.+.+.+...... ....++++.+||.+..+-+-. ..++| +|..+|....+..+ .....
T Consensus 290 ~~tk~ElL~QEGHs---~~v~~iaf~~DGSL~~tGGlD---------------~~~Rv--WDlRtgr~im~L~gH~k~I~ 349 (459)
T KOG0272|consen 290 LETKSELLLQEGHS---KGVFSIAFQPDGSLAATGGLD---------------SLGRV--WDLRTGRCIMFLAGHIKEIL 349 (459)
T ss_pred cccchhhHhhcccc---cccceeEecCCCceeeccCcc---------------chhhe--eecccCcEEEEeccccccee
Confidence 333333222222 367889999999988874321 22566 47778876666654 66678
Q ss_pred eEEEccCCCEE
Q 030675 156 GVALSEDERFL 166 (173)
Q Consensus 156 gi~~~~dg~~l 166 (173)
+++|||+|-.|
T Consensus 350 ~V~fsPNGy~l 360 (459)
T KOG0272|consen 350 SVAFSPNGYHL 360 (459)
T ss_pred eEeECCCceEE
Confidence 99999998544
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.98 E-value=0.00094 Score=48.82 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=81.9
Q ss_pred eEEEcC-CCCEEEEcCCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccCCc
Q 030675 14 DVSVDG-NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGS 91 (173)
Q Consensus 14 ~l~~~~-~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~~~ 91 (173)
.+.|.. +..+.-+..++.|.-|| .+|..+........+. .+.++++|+++-+ ..+.+|.+++++.+..+.. ++-
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs-~k~- 223 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKS-YKM- 223 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEE-ecCceeEEeccccccceee-ccC-
Confidence 344554 33444334556677777 4666554444445566 8999999999444 4566788888765322211 110
Q ss_pred cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-ecc-ccCcceEEEccCCCEEEEE
Q 030675 92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDG-LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 92 ~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~-~~~p~gi~~~~dg~~lyv~ 169 (173)
| ...+.-.++|+-.+||+- ..+..+++||-.|++-... ..+ +.....+.|+|||. +|.+
T Consensus 224 P-~nV~SASL~P~k~~fVaG-----------------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAs 284 (334)
T KOG0278|consen 224 P-CNVESASLHPKKEFFVAG-----------------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYAS 284 (334)
T ss_pred c-cccccccccCCCceEEec-----------------CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeec
Confidence 1 234556788988888872 2457899999888754333 233 44456799999996 7764
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0015 Score=52.21 Aligned_cols=129 Identities=16% Similarity=0.055 Sum_probs=76.4
Q ss_pred ceEEEcCCCC-EEEE-cCCC--eEEEEcCC--Cc-EEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-
Q 030675 13 EDVSVDGNGV-LYTA-TGDG--WIKRMHPN--GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G- 80 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~-~~~~--~i~~~~~~--g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g- 80 (173)
..++|+|+|. |++. +.++ .|+.++.+ +. ...+........ ...++|||+.++++... ..++.++.+ |
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~-~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS-CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc-ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 4579999985 5544 4333 68887653 22 333322233345 67899999875655432 357777754 4
Q ss_pred cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~ 159 (173)
.+.+... . .......++|||+ ++++... .....|+.++.++++.+.+..........+|
T Consensus 363 ~~~Lt~~-~----~~~~~p~wSpDG~~L~f~~~~---------------~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~W 422 (428)
T PRK01029 363 DYQLTTS-P----ENKESPSWAIDSLHLVYSAGN---------------SNESELYLISLITKKTRKIVIGSGEKRFPSW 422 (428)
T ss_pred eEEccCC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCcccCcee
Confidence 4444322 1 2345688999996 5555321 1235899999988877766654333345567
Q ss_pred ccC
Q 030675 160 SED 162 (173)
Q Consensus 160 ~~d 162 (173)
+|-
T Consensus 423 s~~ 425 (428)
T PRK01029 423 GAF 425 (428)
T ss_pred cCC
Confidence 663
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=0.00079 Score=55.83 Aligned_cols=94 Identities=20% Similarity=0.134 Sum_probs=62.5
Q ss_pred CCcceEEEcCCCCEEEEc--CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc----cCC-c
Q 030675 10 NHPEDVSVDGNGVLYTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS----EEG-V 81 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~--~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~----~~g-~ 81 (173)
-+-.+|++||.|.|.++. ..-.|+.|+ .+|++..+......|-.+|.|++.|.+ .++...+..++++ ..+ +
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~-LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL-LASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe-EEeccccceEEEEEeeccCcee
Confidence 345789999999888665 334688888 578877665544444439999999999 5454454444443 245 6
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
+++.-. .-.-++++.|||. +-|+
T Consensus 515 Etl~i~------sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 515 ETLEIR------SDVLAVSFRPDGKELAVA 538 (893)
T ss_pred eeEeec------cceeEEEEcCCCCeEEEE
Confidence 665422 2356788999996 5554
No 90
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.94 E-value=0.00021 Score=55.08 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=64.2
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEccCC-c-EEEEec--cCCccccCCccEEEcCC----CcEEEEeCcCCcCcccc
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQ--FNGSQLRFANDVIEASD----GSLYFTVSSTKFTPAEY 121 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~-~~~~~~--~~~~~~~~~~~l~~~~d----G~~~v~~~~~~~~~~~~ 121 (173)
.|. +|++.|||++ ||++....|+++..+| . ..+... ..........+++++|+ +.+|+.-.....
T Consensus 3 ~P~-~~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~----- 75 (331)
T PF07995_consen 3 NPR-SMAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE----- 75 (331)
T ss_dssp SEE-EEEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred Cce-EEEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence 578 9999999999 9999876788888777 4 444432 22223357899999994 789987432100
Q ss_pred eeeecccCCCceEEEEcCCCC-----eeEEeeccc-------cCcceEEEccCCCEEEEEe
Q 030675 122 YLDLVSGEPHGVLLKYDPSTN-----QTSLVLDGL-------YFANGVALSEDERFLVVCE 170 (173)
Q Consensus 122 ~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~-------~~p~gi~~~~dg~~lyv~~ 170 (173)
.......+|.|+....+ ..+.+.... ....+|+|+||| .|||+-
T Consensus 76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~ 131 (331)
T PF07995_consen 76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSV 131 (331)
T ss_dssp ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEE
T ss_pred ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEe
Confidence 00112246666654333 223333221 223469999999 799974
No 91
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.93 E-value=2.4e-05 Score=37.58 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=22.8
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEE
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRM 35 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~ 35 (173)
+..|.|++++++|.||++| .+.+|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4679999999999999999 66777664
No 92
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.93 E-value=0.00053 Score=51.18 Aligned_cols=101 Identities=23% Similarity=0.255 Sum_probs=62.1
Q ss_pred CCcceEEEcC-CCCEEEEcC--CCeEEEEcCCC-cEEE-e-ccc-------cCccccceEEcc-CCcEEEEEeCCCeEEE
Q 030675 10 NHPEDVSVDG-NGVLYTATG--DGWIKRMHPNG-TWED-W-HQV-------GSQSLLGLTTTK-ENNVIIVCDSQQGLLK 75 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~~--~~~i~~~~~~g-~~~~-~-~~~-------~~~p~~gl~~~~-~g~l~~v~~~~~~i~~ 75 (173)
.+-||+|+|| ++.|||+-. --+|+.++..- .+.. . ... ..... |+.+++ .+.+++.++....++.
T Consensus 181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS-gl~~~~~~~~LLVLS~ESr~l~E 259 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS-GLEFNAITNSLLVLSDESRRLLE 259 (316)
T ss_pred cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc-cceecCCCCcEEEEecCCceEEE
Confidence 5789999999 568888762 23577775221 1110 0 000 12345 888886 4566455555566888
Q ss_pred EccCC-cEEEEeccCC-----ccccCCccEEEcCCCcEEEEe
Q 030675 76 VSEEG-VTVLVSQFNG-----SQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 76 ~~~~g-~~~~~~~~~~-----~~~~~~~~l~~~~dG~~~v~~ 111 (173)
++.+| .........| .....+.++++|.+|++|++.
T Consensus 260 vd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 260 VDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred EecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 88877 3322222221 123578999999999999985
No 93
>PTZ00421 coronin; Provisional
Probab=97.92 E-value=0.0041 Score=50.56 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=77.8
Q ss_pred CcceEEEcC-CCCEEE-EcCCCeEEEEcC-CCc--------EEEeccccCccccceEEccCC-cEEEEEeCCCeEEEEc-
Q 030675 11 HPEDVSVDG-NGVLYT-ATGDGWIKRMHP-NGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS- 77 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~-~~~~~~i~~~~~-~g~--------~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~- 77 (173)
...+++|+| ++.+++ +..++.|..|+. ++. +..+........ .++|++++ ++ +++...++.++++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~i-LaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNV-LASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCE-EEEEeCCCEEEEEE
Confidence 356899999 776554 448888988884 322 122323334566 89999975 56 4444444544444
Q ss_pred c-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc--
Q 030675 78 E-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY-- 152 (173)
Q Consensus 78 ~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 152 (173)
. .+ ...+ .... .....++++++|.++++.. .++.|..||+.+++.........
T Consensus 155 l~tg~~~~~l-~~h~----~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 155 VERGKAVEVI-KCHS----DQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred CCCCeEEEEE-cCCC----CceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCC
Confidence 3 44 2222 1111 2467899999998777632 34788889988765433222221
Q ss_pred CcceEEEccCCCEEE
Q 030675 153 FANGVALSEDERFLV 167 (173)
Q Consensus 153 ~p~gi~~~~dg~~ly 167 (173)
....+.|.+++..++
T Consensus 213 ~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 213 KSQRCLWAKRKDLII 227 (493)
T ss_pred cceEEEEcCCCCeEE
Confidence 223466666665444
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.89 E-value=0.00062 Score=56.51 Aligned_cols=141 Identities=11% Similarity=0.123 Sum_probs=89.3
Q ss_pred CCcceEEEcC-CCCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cE-E
Q 030675 10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VT-V 83 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~-~ 83 (173)
+...+++|.| |.+.|++. -++++..|+ ++-++..|.+...... .+++.|||+.++|......+..++..+ .. .
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence 4567899999 66777766 789998888 5777888888888888 999999999955544333344444444 21 1
Q ss_pred E-EeccCCcc--ccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC---cc
Q 030675 84 L-VSQFNGSQ--LRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF---AN 155 (173)
Q Consensus 84 ~-~~~~~~~~--~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---p~ 155 (173)
. ...-.+++ -....++.+.|-- ++.||. .+.+|-.||.....+.....++.. ..
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~ 550 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQI 550 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcce
Confidence 1 11111111 1246677777522 477774 346888888754444333444433 34
Q ss_pred eEEEccCCCEEEEE
Q 030675 156 GVALSEDERFLVVC 169 (173)
Q Consensus 156 gi~~~~dg~~lyv~ 169 (173)
-..|+.||++|+.+
T Consensus 551 ~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 551 SASFSSDGKHIVSA 564 (712)
T ss_pred eeeEccCCCEEEEe
Confidence 57788898877664
No 95
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.87 E-value=0.00069 Score=52.62 Aligned_cols=140 Identities=12% Similarity=0.127 Sum_probs=85.6
Q ss_pred CCcceEEEcCCCCEEEEc-CC--CeEEEEcCCCcEEEeccc---cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-c
Q 030675 10 NHPEDVSVDGNGVLYTAT-GD--GWIKRMHPNGTWEDWHQV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-V 81 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~--~~i~~~~~~g~~~~~~~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~ 81 (173)
+...-+.|+++|+..++. .+ .-|+....+++....... ..... -|.++||.+.|+.|.....+...|. .| .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~-yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVS-YIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceE-EEEECCCCCeEEecCchHheeeccCCcchh
Confidence 445567888888777655 22 235556667774333222 22334 7889999999566654444555553 56 3
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc--ceEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA--NGVAL 159 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p--~gi~~ 159 (173)
........ ..++...+.-|||.-+|+ +++++.+..+|.+ |....-+.+.+.| ..|++
T Consensus 304 ~~~y~~~~---~~S~~sc~W~pDg~~~V~-----------------Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 304 RHLYPSGL---GFSVSSCAWCPDGFRFVT-----------------GSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI 362 (519)
T ss_pred hhhcccCc---CCCcceeEEccCCceeEe-----------------cCCCCcEEEecCC-cchhhcccccccceeEEEEE
Confidence 32222111 146677888888865565 3466889999998 4443334444434 58999
Q ss_pred ccCCCEEEEEec
Q 030675 160 SEDERFLVVCES 171 (173)
Q Consensus 160 ~~dg~~lyv~~~ 171 (173)
++||++++....
T Consensus 363 t~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 363 TYDGKYVLLVTV 374 (519)
T ss_pred cCCCcEEEEEec
Confidence 999999887643
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.86 E-value=0.00046 Score=54.92 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=47.2
Q ss_pred cCCcceEEEcCCC-CEEEEcCCCeEEEEcCCCcE------EEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 9 VNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTW------EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 9 ~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
..-...+++||.| +++.+..+..|..||..|.- ..+.++..++.+.+.+++.|..+++.........+|.+|
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence 4556789999988 56666677889999976632 122233344444899999888844443334566667788
No 97
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.84 E-value=0.00035 Score=57.62 Aligned_cols=134 Identities=12% Similarity=0.128 Sum_probs=84.3
Q ss_pred cceEEEcCCCCEEEEcCCCeEEE-EcCCC--cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC--cEEE
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKR-MHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVL 84 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~-~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g--~~~~ 84 (173)
...+.|.|-|..|++....+.-| |..+- -...+..+..... ++.|+|+..+ ..+...++.++++ ..| ++.+
T Consensus 496 VwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~-cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 496 VWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVD-CVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred eeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccc-eEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe
Confidence 34577888888777763333333 33222 2233444455566 8999999876 5454445566655 367 4554
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcceEEEccCC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSEDE 163 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~dg 163 (173)
.... .....++++|+|+..++ +..++.|..||..+++. ..+...-...+.|.||.||
T Consensus 574 -~GH~----~~V~al~~Sp~Gr~LaS-----------------g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 574 -TGHK----GPVTALAFSPCGRYLAS-----------------GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG 631 (707)
T ss_pred -cCCC----CceEEEEEcCCCceEee-----------------cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence 3322 35678999999986665 23457899999887654 2333345566789999999
Q ss_pred CEEEEE
Q 030675 164 RFLVVC 169 (173)
Q Consensus 164 ~~lyv~ 169 (173)
..|.+.
T Consensus 632 ~vLasg 637 (707)
T KOG0263|consen 632 NVLASG 637 (707)
T ss_pred CEEEec
Confidence 866653
No 98
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.82 E-value=7.6e-05 Score=56.21 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=54.2
Q ss_pred ceecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC
Q 030675 2 IKLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 2 ~~~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
+.+.+| +..|+++.|. +|+||+.+ ..|.++++|++ |+.+.+....+.|. ||+|. |++++|+.+.
T Consensus 196 evl~~G-LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-GL~f~--G~llvVgmSk 261 (335)
T TIGR03032 196 EVVASG-LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-GLAFA--GDFAFVGLSK 261 (335)
T ss_pred CEEEcC-ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-cccee--CCEEEEEecc
Confidence 456677 8899999996 89999999 78999999986 99988888889999 99998 8886776533
No 99
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.82 E-value=0.0038 Score=48.08 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=66.5
Q ss_pred CcceEEEcCCCCEEEEc-CC------CeEEEEcCCCcEEE-e--ccc-------------cCccccceEEccCCcEEEEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GD------GWIKRMHPNGTWED-W--HQV-------------GSQSLLGLTTTKENNVIIVC 67 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~------~~i~~~~~~g~~~~-~--~~~-------------~~~p~~gl~~~~~g~l~~v~ 67 (173)
-+|+|++.++|.+|+++ .. ..|++++.+|+... + ... -.... +|+++++|+.||++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E-~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFE-GLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeE-EEEECCCCCEEEEE
Confidence 69999997799999998 66 78999998887532 2 111 12367 99999999954766
Q ss_pred eCCC----------------eEEEEcc-C-C--cEEEEeccCC----ccccCCccEEEcCCCcEEEEeCc
Q 030675 68 DSQQ----------------GLLKVSE-E-G--VTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 68 ~~~~----------------~i~~~~~-~-g--~~~~~~~~~~----~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
.... +++.++. + + ...+.=..+. .....+.+++.-++|+++|-+-.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 4221 2444553 2 3 2322211111 02357788999999999998754
No 100
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0054 Score=45.94 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=83.1
Q ss_pred ccCCcceEEEcCCCCEEEEc-CCCeEEE--EcCCCcEEEecc---------c-cCccccceEEccCCcEEEEEeCCC--e
Q 030675 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKR--MHPNGTWEDWHQ---------V-GSQSLLGLTTTKENNVIIVCDSQQ--G 72 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~--~~~~g~~~~~~~---------~-~~~p~~gl~~~~~g~l~~v~~~~~--~ 72 (173)
.+..||++++-.+|...+++ .+..++. +++++....... . -..-. |+++++..+.||++-..+ +
T Consensus 127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEEccCCcE
Confidence 37889999998777666777 6666665 456654332211 1 11346 999999776658876553 6
Q ss_pred EEEEcc--CC-cEEEEecc-CCc--cccCCccEEEcC-CCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 73 LLKVSE--EG-VTVLVSQF-NGS--QLRFANDVIEAS-DGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 73 i~~~~~--~g-~~~~~~~~-~~~--~~~~~~~l~~~~-dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
|+.++. +. ........ ... -..-..++.+++ .++++| ++ .++.|..+|.++.-+
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~------------------ESr~l~Evd~~G~~~ 267 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD------------------ESRRLLEVDLSGEVI 267 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec------------------CCceEEEEecCCCee
Confidence 777662 23 11111111 110 123456677776 455555 33 235667777663222
Q ss_pred EEe---------eccccCcceEEEccCCCEEEEEecC
Q 030675 145 SLV---------LDGLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 145 ~~~---------~~~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
..+ ....+.+.||+.+++|....|+|.+
T Consensus 268 ~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 268 ELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred eeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 222 1235778999999999744445543
No 101
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.76 E-value=0.00019 Score=56.33 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=86.3
Q ss_pred CCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC----c
Q 030675 10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG----V 81 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g----~ 81 (173)
.-|.++-+.|++ ++|++. .+++|..||. .|+++ .+....+..+ .|.|-++|+. +++.....-++++..+ .
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~r-FissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRR-FISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCce-EeeeccCccEEEEEcCCCccc
Confidence 347889999976 888666 8899999984 55543 2334455566 8999999999 7776666667776544 2
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC---eeEEeecc---ccCcc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN---QTSLVLDG---LYFAN 155 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~---~~~p~ 155 (173)
..+... ....--.++.+|+|..+++-. .++.++.|...-. .......+ ...+.
T Consensus 378 k~i~~~----~~hsmP~~~~~P~~~~~~aQs-----------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 378 KNIADP----EMHTMPCLTLHPNGKWFAAQS-----------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred hhhcch----hhccCcceecCCCCCeehhhc-----------------cCceEEEEecccccccCHhhhhcceeccCcee
Confidence 222211 123345588899988777632 2345555543211 01111112 34566
Q ss_pred eEEEccCCCEEEEEec
Q 030675 156 GVALSEDERFLVVCES 171 (173)
Q Consensus 156 gi~~~~dg~~lyv~~~ 171 (173)
.+.|||||++|.-.++
T Consensus 437 ~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDS 452 (503)
T ss_pred eEEEcCCCCeEEeecC
Confidence 8999999998876554
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.76 E-value=0.00061 Score=56.92 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEe
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVS 86 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~ 86 (173)
..||+.|.-+++.++. .+|-+..|+..++... -......+. ++..+....++.++.....|..+|. .- ++.+..
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc-eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 5689999866666655 7777777876555422 122333455 7777766555344444446777774 22 333322
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEE
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL 166 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~l 166 (173)
.. +..++++++|||+..++. ..+++|..||..++...-...--..+..+.|||.|++|
T Consensus 575 h~-----nritd~~FS~DgrWlisa-----------------smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 575 HG-----NRITDMTFSPDGRWLISA-----------------SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFL 632 (910)
T ss_pred cc-----cceeeeEeCCCCcEEEEe-----------------ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEE
Confidence 11 578999999999977763 23478999998877654333333445689999999988
Q ss_pred EEEe
Q 030675 167 VVCE 170 (173)
Q Consensus 167 yv~~ 170 (173)
..+.
T Consensus 633 AT~H 636 (910)
T KOG1539|consen 633 ATVH 636 (910)
T ss_pred EEEE
Confidence 7654
No 103
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.75 E-value=0.0015 Score=50.78 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=86.6
Q ss_pred cCCcceEEEcCCCCEEEEcC-C--CeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEE
Q 030675 9 VNHPEDVSVDGNGVLYTATG-D--GWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTV 83 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~~-~--~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~ 83 (173)
-.+..+++|.++|.|..+.. + ++|+=+ -+|+..- +........ ++.|+|+|.. +.+...++..++++ -....
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDl-Rtgr~im~L~gH~k~I~-~V~fsPNGy~-lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDL-RTGRCIMFLAGHIKEIL-SVAFSPNGYH-LATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeec-ccCcEEEEeccccccee-eEeECCCceE-EeecCCCCcEEEeeeccccc
Confidence 35567899999999998773 2 343333 3565443 333445566 9999999988 66666666666654 33222
Q ss_pred EEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEcc
Q 030675 84 LVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE 161 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~ 161 (173)
+...... -+-...+.++| -|.+.+|... ++.+-.+...+..+.... ..-.-.-++.+++
T Consensus 380 ly~ipAH--~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 380 LYTIPAH--SNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred ceecccc--cchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEecc
Confidence 2222111 14567899998 5667777532 356777777766654443 3345556788899
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
|++.+..+
T Consensus 441 d~~~i~t~ 448 (459)
T KOG0272|consen 441 DSQAIATS 448 (459)
T ss_pred CCceEEEe
Confidence 98865443
No 104
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.68 E-value=0.0026 Score=48.12 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred cCccccceEEccC-CcEEEEEeCC-CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccce
Q 030675 48 GSQSLLGLTTTKE-NNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYY 122 (173)
Q Consensus 48 ~~~p~~gl~~~~~-g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~ 122 (173)
+...+ +++.+|. +..++++-.- .-.+++|. +| ........++.- ..=.-++++||+ +|.|++..
T Consensus 4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEnd~-------- 72 (305)
T PF07433_consen 4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTENDY-------- 72 (305)
T ss_pred Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEecccc--------
Confidence 45678 8999984 4553444332 34677775 56 333333333332 233578899997 67776542
Q ss_pred eeecccCCCceEEEEcCCCC--eeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 123 LDLVSGEPHGVLLKYDPSTN--QTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 123 ~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
....|.|-.||...+ ++..+....-.|..|.+.|||++|.|++-
T Consensus 73 -----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred -----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 234588999998732 34445556678999999999999999874
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.68 E-value=0.0018 Score=55.40 Aligned_cols=142 Identities=13% Similarity=0.179 Sum_probs=77.9
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-----------C---cEEEe------ccccCccccceEEccCCcEEEEEe
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-----------G---TWEDW------HQVGSQSLLGLTTTKENNVIIVCD 68 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-----------g---~~~~~------~~~~~~p~~gl~~~~~g~l~~v~~ 68 (173)
..-.++.|.+||..+++. .+.-|+.|... | ..+.| ....+... .++++|++.+|.-+.
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVS 148 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEec
Confidence 445678899999655444 55545555422 1 01111 12233456 788999999844343
Q ss_pred CCCeEEEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030675 69 SQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (173)
Q Consensus 69 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 148 (173)
..+.|+..+..-++.+ ....+. ...+-++.+||-|+.+.+-. .+.+|..+....-.++...
T Consensus 149 ~DnsViiwn~~tF~~~-~vl~~H-~s~VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELL-KVLRGH-QSLVKGVSWDPIGKYFASQS-----------------DDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccceEEEEccccceee-eeeecc-cccccceEECCccCeeeeec-----------------CCceEEEEEcccceeeEee
Confidence 3455666664322211 111221 14678999999998777732 2344444443222333333
Q ss_pred c-ccc------CcceEEEccCCCEEEEEec
Q 030675 149 D-GLY------FANGVALSEDERFLVVCES 171 (173)
Q Consensus 149 ~-~~~------~p~gi~~~~dg~~lyv~~~ 171 (173)
. .+. .-.-+.|||||++|.+.+.
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecchhh
Confidence 2 222 1235889999999877654
No 106
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.66 E-value=0.0076 Score=45.05 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=86.7
Q ss_pred CcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc---cCC-cE
Q 030675 11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG-VT 82 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~---~~g-~~ 82 (173)
-.-+|.+.| +++.|++. .+...+.||. ++. .+.+.......+ .+.|.|+|.- +++...++.-++. .+- +.
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN-sv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN-SVRFFPSGDA-FATGSDDATCRLYDLRADQELA 265 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc-eEEEccCCCe-eeecCCCceeEEEeecCCcEEe
Confidence 345677778 88999877 5666666763 444 556655666778 9999999988 8777666544443 343 44
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~~ 161 (173)
.+... ......+.++++..|++.++-+ .+..+..+|.-.++ +..+.........+.++|
T Consensus 266 ~ys~~---~~~~gitSv~FS~SGRlLfagy-----------------~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 266 VYSHD---SIICGITSVAFSKSGRLLFAGY-----------------DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred eeccC---cccCCceeEEEcccccEEEeee-----------------cCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 44321 1123568899999999887732 23467777754344 333444467778899999
Q ss_pred CCC
Q 030675 162 DER 164 (173)
Q Consensus 162 dg~ 164 (173)
||.
T Consensus 326 DG~ 328 (343)
T KOG0286|consen 326 DGM 328 (343)
T ss_pred CCc
Confidence 995
No 107
>PTZ00420 coronin; Provisional
Probab=97.65 E-value=0.015 Score=48.17 Aligned_cols=114 Identities=8% Similarity=-0.005 Sum_probs=68.9
Q ss_pred CCcceEEEcCC-CCEEEEc-CCCeEEEEcC-CCc--E-------EEeccccCccccceEEccCCcEEEEEeCCCeEEEE-
Q 030675 10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMHP-NGT--W-------EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV- 76 (173)
Q Consensus 10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~-~g~--~-------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~- 76 (173)
....+++|+|+ +.++++. .++.|..|+. ++. . ..+........ .++|+|++..++++...++.+++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence 44678999995 6666554 7888888884 221 1 11222334566 89999988763444444444444
Q ss_pred cc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030675 77 SE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 77 ~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 145 (173)
|. .+.....-.. . .....++++++|.++++.. .++.|..||+.+++..
T Consensus 154 Dl~tg~~~~~i~~-~---~~V~SlswspdG~lLat~s-----------------~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 154 DIENEKRAFQINM-P---KKLSSLKWNIKGNLLSGTC-----------------VGKHMHIIDPRKQEIA 202 (568)
T ss_pred ECCCCcEEEEEec-C---CcEEEEEECCCCCEEEEEe-----------------cCCEEEEEECCCCcEE
Confidence 43 4421111111 1 2467899999999877632 3468888999877653
No 108
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.0057 Score=45.36 Aligned_cols=135 Identities=14% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-Cc-EEEeccccCccccceEEccCCcEEEEEeCCCe-EEEEccCC--cEE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEG--VTV 83 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g--~~~ 83 (173)
...++++..++|...++. .++.+..||.. |+ ...+..+..... +++|++|.+. .++..-+. +...+.-| .-+
T Consensus 64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCce-eecCCCcceeeeeeecccEEEE
Confidence 446678888999888776 78888888864 43 334545555677 9999999888 66655544 44444444 333
Q ss_pred EEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030675 84 LVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE 161 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~ 161 (173)
...... -.+.+.+.++|+- +.++... ..++.|-.+|.++-+++....+ -...|-+++||
T Consensus 142 ~~~~~~---~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 142 IHEDSH---REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred EecCCC---cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence 333221 2578889999975 4444432 2457888888876554433332 45567899999
Q ss_pred CCCE
Q 030675 162 DERF 165 (173)
Q Consensus 162 dg~~ 165 (173)
||..
T Consensus 203 DGsl 206 (315)
T KOG0279|consen 203 DGSL 206 (315)
T ss_pred CCCE
Confidence 9863
No 109
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.59 E-value=0.0061 Score=47.42 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=83.9
Q ss_pred CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEeccCCccccCC
Q 030675 21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFA 96 (173)
Q Consensus 21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~ 96 (173)
...++++ .+.+|..||. .+......+.++... .+.++.+|.-+..|...+.+-.+|--+ +.....-..-+...-.
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 4555666 6677888883 445554445566677 888888887756664444444455322 3222221111112336
Q ss_pred ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc---CcceEEEccCCCEEEEEe
Q 030675 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY---FANGVALSEDERFLVVCE 170 (173)
Q Consensus 97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~p~gi~~~~dg~~lyv~~ 170 (173)
+.+.|+|+|.+..+ ++.+|+|+.++..+++++.+..... ..+.++|+|-|..|.-++
T Consensus 391 trvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 77899999875554 3466899999999999888876532 357899999888776554
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.0042 Score=46.97 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=77.3
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC------cEEEeccccCccccceEEccCCcEEEEEe-CCCe--EEEEc--
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQG--LLKVS-- 77 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g------~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~--i~~~~-- 77 (173)
....+++|.++|.-+++. .++.|..|+.+. +..+..-+.+.|. -++|.||-+-++|+. .++. ++.++
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 456789999999877666 667677776432 1222233456888 999999876644443 3443 34343
Q ss_pred cCC-cEEEEeccC---CccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc
Q 030675 78 EEG-VTVLVSQFN---GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY 152 (173)
Q Consensus 78 ~~g-~~~~~~~~~---~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 152 (173)
.+| ........+ -...+...-+.+.- ++..|+. ..+.+..|..|+..+..+..+..+-.
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im----------------sas~dt~i~lw~lkGq~L~~idtnq~ 229 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM----------------SASLDTKICLWDLKGQLLQSIDTNQS 229 (420)
T ss_pred ccCCCCcccccccccccchhcccceEEEeecCCceEEE----------------EecCCCcEEEEecCCceeeeeccccc
Confidence 255 111111111 11112222222221 2233333 23344688888887333444444444
Q ss_pred CcceEEEccCCCEEEEE
Q 030675 153 FANGVALSEDERFLVVC 169 (173)
Q Consensus 153 ~p~gi~~~~dg~~lyv~ 169 (173)
.-.-.++||+||++.++
T Consensus 230 ~n~~aavSP~GRFia~~ 246 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVS 246 (420)
T ss_pred cccceeeCCCCcEEEEe
Confidence 44567899999988775
No 111
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.59 E-value=0.00093 Score=55.25 Aligned_cols=105 Identities=14% Similarity=0.193 Sum_probs=71.2
Q ss_pred ceecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 2 IKLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 2 ~~~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
+++..|-+.--.++.|+|+....++. .+..+.-|| ..|..++ +..+-+... .++++|+|++ .++....+++.+++
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~-al~~Sp~Gr~-LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT-ALAFSPCGRY-LASGDEDGLIKIWD 605 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE-EEEEcCCCce-EeecccCCcEEEEE
Confidence 34566667788899999998766665 667777888 4666554 433334455 9999999998 55555555555553
Q ss_pred --CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 79 --EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 79 --~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
.| +..+... . ...+.|.++.||.++++.+.
T Consensus 606 l~~~~~v~~l~~H-t----~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 606 LANGSLVKQLKGH-T----GTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred cCCCcchhhhhcc-c----CceeEEEEecCCCEEEecCC
Confidence 44 3333222 1 45688999999999998654
No 112
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.0069 Score=45.32 Aligned_cols=95 Identities=14% Similarity=0.249 Sum_probs=56.1
Q ss_pred EcCCC-CEEEEcC-----CCeEEEEcCCCcEEE---eccccCccccceEEccCCcEEEEEeCC---C-------------
Q 030675 17 VDGNG-VLYTATG-----DGWIKRMHPNGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQ---Q------------- 71 (173)
Q Consensus 17 ~~~~g-~l~~~~~-----~~~i~~~~~~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~---~------------- 71 (173)
++++| .||.+.+ .|-|-.||...+..+ |...+-.|+ -+.+.+||+++++++.+ +
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 45666 3555542 244555654433333 333445789 99999999998888752 1
Q ss_pred --eEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 72 --GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 72 --~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
.++.++ .+| +++.. ........+...+++++||++|+.+..
T Consensus 200 ePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred CccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 244445 355 22211 111223457788999999999998743
No 113
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.55 E-value=0.01 Score=43.51 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-----EEE---eccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030675 6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-----WED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV 76 (173)
Q Consensus 6 ~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-----~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~ 76 (173)
+........++++|+|...++. ..|..|.|+.-++ ++. +....+... -+.++||+++|..|.....+...
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il-~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL-RCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE-EEEECCCCcEEEeecCCceEEEE
Confidence 3334567789999999877666 7889999984331 221 222333455 67789999995555444444444
Q ss_pred ccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030675 77 SEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 77 ~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
..++.-.+.....+.. .+.=+.+|+.||+.+||-.
T Consensus 243 n~~~~~kle~~l~gh~-rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 243 NTDDFFKLELVLTGHQ-RWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred ecCCceeeEEEeecCC-ceEEeeeeccCccEEEecC
Confidence 4555211111122211 4677889999999888743
No 114
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.55 E-value=0.003 Score=48.92 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=56.6
Q ss_pred eEEEcCC-CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEecc
Q 030675 14 DVSVDGN-GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQF 88 (173)
Q Consensus 14 ~l~~~~~-g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~ 88 (173)
-++|+|. .++.++. .+..|..|+. +|....-........ .+.|+.||.++..+.....|..+|+ .| +..-....
T Consensus 136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 3677773 3444433 6778888884 565443334666778 8999999998444444555666675 55 33222233
Q ss_pred CCccccCCccEEEcCCCcEEEE
Q 030675 89 NGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 89 ~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
.| ..|-...+-.+|.++.|
T Consensus 215 eG---~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 215 EG---AKPARAIFLASGKIFTT 233 (472)
T ss_pred cC---CCcceeEEeccCceeee
Confidence 33 45666777778885555
No 115
>PTZ00421 coronin; Provisional
Probab=97.55 E-value=0.016 Score=47.25 Aligned_cols=141 Identities=12% Similarity=0.079 Sum_probs=75.9
Q ss_pred CcceEEEcCCC-CEEEE-cCCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030675 11 HPEDVSVDGNG-VLYTA-TGDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV 83 (173)
Q Consensus 11 ~p~~l~~~~~g-~l~~~-~~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~ 83 (173)
...+++|+|++ .++++ ..++.|..||.. ++.. .+........ .++|+++|++++.+.....+..+|. ++ ...
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 45678999964 55554 478889999854 4433 2323344566 9999999998444433334444553 45 222
Q ss_pred EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeec--cccCcceEEEc
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLD--GLYFANGVALS 160 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~--~~~~p~gi~~~ 160 (173)
+.. ..+ .....+.+.+++..+++.... ...++.|..||..+.. +..... ......-..|+
T Consensus 206 l~~-H~~---~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d 268 (493)
T PTZ00421 206 VEA-HAS---AKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD 268 (493)
T ss_pred Eec-CCC---CcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc
Confidence 211 111 122345667776655553210 1234678888876432 111111 11112224578
Q ss_pred cCCCEEEEE
Q 030675 161 EDERFLVVC 169 (173)
Q Consensus 161 ~dg~~lyv~ 169 (173)
+|++.||++
T Consensus 269 ~d~~~L~lg 277 (493)
T PTZ00421 269 EDTNLLYIG 277 (493)
T ss_pred CCCCEEEEE
Confidence 888888775
No 116
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.54 E-value=0.0018 Score=48.93 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=62.1
Q ss_pred CcceEEEcC---CC-CEEEEc-CCCeEEEEcC----CCc----------EEEeccccCccccceEEccCCcEEEEEeCC-
Q 030675 11 HPEDVSVDG---NG-VLYTAT-GDGWIKRMHP----NGT----------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ- 70 (173)
Q Consensus 11 ~p~~l~~~~---~g-~l~~~~-~~~~i~~~~~----~g~----------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~- 70 (173)
+..|++..| +| .||+.. ...++|++.. +.. .+.+...+.... |+++|++|.+ |+++..
T Consensus 129 g~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~-g~~~D~~G~l-y~~~~~~ 206 (287)
T PF03022_consen 129 GIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD-GMAIDPNGNL-YFTDVEQ 206 (287)
T ss_dssp SEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC-EEEEETTTEE-EEEECCC
T ss_pred CccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCc-eEEECCCCcE-EEecCCC
Confidence 356777766 44 699888 5567898851 221 122222234567 9999999999 988876
Q ss_pred CeEEEEccCC------cEEEEeccCCccccCCccEEEcC--CCcEEEEeCc
Q 030675 71 QGLLKVSEEG------VTVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSS 113 (173)
Q Consensus 71 ~~i~~~~~~g------~~~~~~~~~~~~~~~~~~l~~~~--dG~~~v~~~~ 113 (173)
+.|.++++++ .+.++. +...+.+|+++.+++ +|.+|+..+.
T Consensus 207 ~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 207 NAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp TEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEECc
Confidence 5788888755 233332 223368999999999 9999998644
No 117
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.0024 Score=50.17 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=71.4
Q ss_pred eecCCccCCcceEEEcC-CCCEEEEcCCC-eE--------------E----EE---cCCCc------EEE-e------cc
Q 030675 3 KLGEGIVNHPEDVSVDG-NGVLYTATGDG-WI--------------K----RM---HPNGT------WED-W------HQ 46 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~-~g~l~~~~~~~-~i--------------~----~~---~~~g~------~~~-~------~~ 46 (173)
.+.-| +-+|.|++|+| +|.||++++.. .+ | ++ +.+++ ... . ..
T Consensus 233 i~s~G-~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~ 311 (399)
T COG2133 233 IWSYG-HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWA 311 (399)
T ss_pred eEEec-cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeec
Confidence 44555 67899999999 59999998322 11 0 11 01111 000 0 01
Q ss_pred ccCccccceEEccC-------CcEEEEEeCCCe-EEEEccCC-cEEEEe-ccCCccccCCccEEEcCCCcEEEEeCcCCc
Q 030675 47 VGSQSLLGLTTTKE-------NNVIIVCDSQQG-LLKVSEEG-VTVLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKF 116 (173)
Q Consensus 47 ~~~~p~~gl~~~~~-------g~l~~v~~~~~~-i~~~~~~g-~~~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~ 116 (173)
..-.|. ||+|-.. +.+ +|+..++. +++.+.+| .+.+.. .+.+....+|.++++.+||.+|+++..
T Consensus 312 ~h~Aps-GmaFy~G~~fP~~r~~l-fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~--- 386 (399)
T COG2133 312 PHIAPS-GMAFYTGDLFPAYRGDL-FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ--- 386 (399)
T ss_pred cccccc-eeEEecCCcCccccCcE-EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC---
Confidence 112367 9999632 567 88776654 66666666 232222 122111268999999999999998743
Q ss_pred CcccceeeecccCCCceEEEEcCC
Q 030675 117 TPAEYYLDLVSGEPHGVLLKYDPS 140 (173)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~~~d~~ 140 (173)
.+++|+|+..+
T Consensus 387 -------------~~g~i~Rv~~~ 397 (399)
T COG2133 387 -------------GDGRILRVSYA 397 (399)
T ss_pred -------------CCCeEEEecCC
Confidence 35799999765
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.53 E-value=0.0051 Score=48.19 Aligned_cols=136 Identities=9% Similarity=0.085 Sum_probs=84.8
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCC-C-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC-cEEEE
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG-VTVLV 85 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g-~~~~~ 85 (173)
-.+.+++|||.||.+. .++.+-.||.. + ....|..+.+... .|.|+.+|.+|.++.....+..+|- .- +..+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 4578899999999777 77777777743 2 4556655555566 9999999987444443334665552 22 44432
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEEEccC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVALSED 162 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~~~~d 162 (173)
.. +. ...+.+.+|..|...+.-. .+-.||.++..+.+-..+ .......+++.|...
T Consensus 429 l~-~~---~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 429 LD-EK---KEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH 487 (506)
T ss_pred cc-cc---ccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence 21 11 2478899999997655421 224788887655432222 222346789999877
Q ss_pred CCEEEEE
Q 030675 163 ERFLVVC 169 (173)
Q Consensus 163 g~~lyv~ 169 (173)
.+++..+
T Consensus 488 aq~l~s~ 494 (506)
T KOG0289|consen 488 AQYLAST 494 (506)
T ss_pred ceEEeec
Confidence 6655444
No 119
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.52 E-value=0.0024 Score=49.78 Aligned_cols=136 Identities=11% Similarity=0.077 Sum_probs=82.0
Q ss_pred CCcceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccc--cCccccceEEccCCcEEEEEeCCC-eEEEEccCC--cE
Q 030675 10 NHPEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--VT 82 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g--~~ 82 (173)
+....+.|+||. .|..+..+..+..||. +|......+. +..+. ..++.|||.- +|+.... .++..+.|| ..
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFR-FVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCce-eEecCCCCcEEEecCCcchhh
Confidence 345568899965 5555556666788885 4544332222 34566 8899999988 7776554 466667787 33
Q ss_pred EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.+. +.......+|++.+||. ++..+. +..+..|+.++..-+.+...-.....+++|.
T Consensus 348 ~W~----gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e~~~dr~lise~~~its~~iS~ 405 (519)
T KOG0293|consen 348 NWE----GVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNREARVDRGLISEEQPITSFSISK 405 (519)
T ss_pred ccc----ccccceeEEEEEcCCCcEEEEEec------------------ccceeeechhhhhhhccccccCceeEEEEcC
Confidence 322 22224678999999997 444432 2355556655332222333334456788888
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
|++++.|+
T Consensus 406 d~k~~Lvn 413 (519)
T KOG0293|consen 406 DGKLALVN 413 (519)
T ss_pred CCcEEEEE
Confidence 88866654
No 120
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.50 E-value=0.019 Score=41.63 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=63.2
Q ss_pred EEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEE-Ee-ccCC
Q 030675 16 SVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL-VS-QFNG 90 (173)
Q Consensus 16 ~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~-~~-~~~~ 90 (173)
++..++.+|+++.++.|+++|. +|+..--........ ......++++ |++.....++.++ .+| ...- .. ..+.
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeeccccc-ccccceeeeEecccCCcceeeeeccccccc
Confidence 4545889999988899999996 776432222222222 2223355566 7776556799999 588 3322 11 1111
Q ss_pred ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 91 ~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
.....+....++ ++.+|+... ++.|+.+|+++|+.
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKL 144 (238)
T ss_dssp CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEE
T ss_pred cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcE
Confidence 112234445555 445777642 36899999888876
No 121
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.0053 Score=45.93 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=71.8
Q ss_pred EEcCCCcEEEeccccCccccceEEccCC-cEEEEEeCC-CeEEEEccCC-cEEE-EeccCCccccCCccEEEcCCCc-EE
Q 030675 34 RMHPNGTWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQ-QGLLKVSEEG-VTVL-VSQFNGSQLRFANDVIEASDGS-LY 108 (173)
Q Consensus 34 ~~~~~g~~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~-~~i~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~~~dG~-~~ 108 (173)
-++..|+++.....+...+ ||+++|.- +.+.++-.- .-.+.+|.++ .+.+ .....+. +..-.-.+++||+ +|
T Consensus 53 ~~~eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~dG~~LY 129 (366)
T COG3490 53 TLSEAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPDGRLLY 129 (366)
T ss_pred EEccCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc--eeecccccCCCCcEEE
Confidence 3445666665555566788 99999864 333444322 2355566665 2222 1111222 2334467899997 78
Q ss_pred EEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--eEEeeccccCcceEEEccCCCEEEEEec
Q 030675 109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
.|++... ...|-|=.||...+. +-.+-.-.-.|..+.+.+||++|.|++-
T Consensus 130 ATEndfd-------------~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 130 ATENDFD-------------PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred eecCCCC-------------CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 8886632 234566667765332 2222233567889999999999999864
No 122
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.49 E-value=0.011 Score=43.59 Aligned_cols=136 Identities=12% Similarity=0.155 Sum_probs=77.3
Q ss_pred CCcceEEEcCC-CCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEe
Q 030675 10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS 86 (173)
Q Consensus 10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~ 86 (173)
...+.++++|. -.++++. .+..|.+|| ..++........+.-. -++++|+|..+.+.+..+.+..++........
T Consensus 65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~- 142 (313)
T KOG1407|consen 65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVN- 142 (313)
T ss_pred cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceee-
Confidence 35677999994 4677655 667788888 3555433223333333 58899999885666666677777743211111
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc---ceEEEccCC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA---NGVALSEDE 163 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p---~gi~~~~dg 163 (173)
..+ .....|.++..-++.+||-.++ .|.|....=. +++++..--..| --|.|+|+|
T Consensus 143 ~~~--~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 143 EEQ--FKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred hhc--ccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCCC
Confidence 111 1134688888877777775432 2444443321 233333322233 247789999
Q ss_pred CEEEE
Q 030675 164 RFLVV 168 (173)
Q Consensus 164 ~~lyv 168 (173)
|++.+
T Consensus 202 ryfA~ 206 (313)
T KOG1407|consen 202 RYFAT 206 (313)
T ss_pred ceEee
Confidence 98765
No 123
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.49 E-value=0.0035 Score=48.92 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=71.8
Q ss_pred EEcCCC-CEEE-Ec--CCCeEEEEcC-CCcEEEecccc-CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEec
Q 030675 16 SVDGNG-VLYT-AT--GDGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQ 87 (173)
Q Consensus 16 ~~~~~g-~l~~-~~--~~~~i~~~~~-~g~~~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~ 87 (173)
+|.++| +|+| ++ ....++.+|. +++...+.+.. .... |..++++.+.+|.......+++++. +. .+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 456677 4554 44 3456889995 56666665543 3344 6677787777555545567999995 44 4455544
Q ss_pred cCCccccCCccEEEcCCCcEEEEeCcCC--cC-cc--cceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030675 88 FNGSQLRFANDVIEASDGSLYFTVSSTK--FT-PA--EYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~--~~-~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~ 161 (173)
.++.. ..-....+.|++.++...... .. .. .+..+.++..+..+|+++|..+|+.+++...-...+-+.+||
T Consensus 121 p~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 121 PDDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp -TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred Ccccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 33221 112233456787766532111 00 01 122456667778899999999999988877655555666665
No 124
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.47 E-value=0.029 Score=43.21 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=87.0
Q ss_pred CccCCcceEEEcC-CCCEE-EEcCCCe------EEEEcCC---C---cEE-----Eeccc--------cCccccceEEcc
Q 030675 7 GIVNHPEDVSVDG-NGVLY-TATGDGW------IKRMHPN---G---TWE-----DWHQV--------GSQSLLGLTTTK 59 (173)
Q Consensus 7 ~~~~~p~~l~~~~-~g~l~-~~~~~~~------i~~~~~~---g---~~~-----~~~~~--------~~~p~~gl~~~~ 59 (173)
..+.+-.||++++ +|.+| ++| ++. ++.+..+ + .+. .+... ...+. ||++.+
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~ 94 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSD-RGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPP 94 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEEC-CCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEec
Confidence 3467789999996 66777 455 333 6655421 1 111 11111 11578 999988
Q ss_pred CCcEEEEEeCC-------CeEEEEccCC--cEEEE--ecc-------CC-ccccCCccEEEcCCCc-EEEEeCcCCcCcc
Q 030675 60 ENNVIIVCDSQ-------QGLLKVSEEG--VTVLV--SQF-------NG-SQLRFANDVIEASDGS-LYFTVSSTKFTPA 119 (173)
Q Consensus 60 ~g~l~~v~~~~-------~~i~~~~~~g--~~~~~--~~~-------~~-~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~ 119 (173)
+|.+ ||+..+ ..|++++.+| .+.+. ... .+ +.-....+|++.|||+ +|+...+...+..
T Consensus 95 ~g~~-~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 95 DGSF-WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCCE-EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 9998 776644 4688888888 34331 111 11 1234678899999998 8887544211111
Q ss_pred cceeeecccCCCceEEEEcCCC-Ce-eEEeec---------cccCcceEEEccCCCEEEEEe
Q 030675 120 EYYLDLVSGEPHGVLLKYDPST-NQ-TSLVLD---------GLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 120 ~~~~~~~~~~~~~~v~~~d~~~-~~-~~~~~~---------~~~~p~gi~~~~dg~~lyv~~ 170 (173)
.. ........-+++++|+.+ ++ ...+.. ....+..|++-++++ ++|-|
T Consensus 174 ~~--~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLE 232 (326)
T PF13449_consen 174 PR--ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLE 232 (326)
T ss_pred cc--cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEE
Confidence 00 000111225889999875 21 222222 123345677778887 55544
No 125
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.47 E-value=0.00027 Score=33.87 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.3
Q ss_pred ccCCccEEEcCCCcEEEEeCc
Q 030675 93 LRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 93 ~~~~~~l~~~~dG~~~v~~~~ 113 (173)
+..|.+++++++|++||+|..
T Consensus 1 f~~P~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSG 21 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECC
T ss_pred CcCCcEEEEeCCCCEEEEECC
Confidence 357999999999999999854
No 126
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0057 Score=48.84 Aligned_cols=120 Identities=15% Similarity=0.095 Sum_probs=72.5
Q ss_pred CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccCC--cEEEEeccCCccccCCccEEEcC
Q 030675 30 GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEEG--VTVLVSQFNGSQLRFANDVIEAS 103 (173)
Q Consensus 30 ~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~ 103 (173)
.+++.++.+ |+..++....+.-. ..+|+|||+.+.++...+ .++.+|.++ ...+ ...++ .-..=.+.|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~g----i~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFG----INTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCc----cccCccCCC
Confidence 347777743 44444434444444 667999998866665443 477778655 3332 22222 112456779
Q ss_pred CCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 104 dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
||+ ++++.... ..-.||+++++++.++.+........--.+||||+++.+..
T Consensus 292 dG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 292 DGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 996 55553221 11289999999887777766554444557899999877654
No 127
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.45 E-value=0.0013 Score=52.53 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=79.5
Q ss_pred cCCcceEEEcCC-CCEE-EEcCCCeEEEEcCCC---cEEEeccc---cC--ccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 9 VNHPEDVSVDGN-GVLY-TATGDGWIKRMHPNG---TWEDWHQV---GS--QSLLGLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 9 ~~~p~~l~~~~~-g~l~-~~~~~~~i~~~~~~g---~~~~~~~~---~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
.....+.+|+|. ...| .+..++.+..|+.+. ++..+... +. .+. ..+|++||++ +.+.-.+|-+.++.
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~-iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKL-IAAGCLDGSIQIWD 345 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCCCcch-hhhcccCCceeeee
Confidence 344567789983 3444 455778887787543 23333222 11 356 8899999998 65544445444443
Q ss_pred CC---cEEE--EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeecccc
Q 030675 79 EG---VTVL--VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLY 152 (173)
Q Consensus 79 ~g---~~~~--~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 152 (173)
.+ +... .... ..+......|.|++||+++.+-. .++++-.||... .++-.+..++.
T Consensus 346 ~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg-----------------~D~tLKvWDLrq~kkpL~~~tgL~ 407 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRG-----------------FDDTLKVWDLRQFKKPLNVRTGLP 407 (641)
T ss_pred cCCcccccceEeeec-cCCCCceeEEEeccccchhhhcc-----------------CCCceeeeeccccccchhhhcCCC
Confidence 23 2221 2111 11223567799999999877732 235666677653 23333444544
Q ss_pred Cc---ceEEEccCCCEEE
Q 030675 153 FA---NGVALSEDERFLV 167 (173)
Q Consensus 153 ~p---~gi~~~~dg~~ly 167 (173)
.+ ..++||||.+.++
T Consensus 408 t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 408 TPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred ccCCCCccccCCCceEEE
Confidence 43 3589999987443
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.0025 Score=50.12 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=84.3
Q ss_pred CcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEE
Q 030675 11 HPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLV 85 (173)
Q Consensus 11 ~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~ 85 (173)
..+-..+.+++.+. +....|.|+.+.. ++.+..-....+... +++|+.+++.||++.....|+.++- .. ..++.
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 44566777877644 3447788888873 454433223355667 8999999999788876667887774 22 44444
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC----CeeEEeec--c-ccCcceEE
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST----NQTSLVLD--G-LYFANGVA 158 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~--~-~~~p~gi~ 158 (173)
+. | -.+-..++++.+|.++.+ + +..|-|-.||.++ +.++++.. + ....+.|+
T Consensus 384 D~--G--~v~gts~~~S~ng~ylA~-G----------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 384 DD--G--SVHGTSLCISLNGSYLAT-G----------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred ec--C--ccceeeeeecCCCceEEe-c----------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 32 1 124466788889884444 2 2446777777432 22222221 1 24457899
Q ss_pred EccCCCEEEEEe
Q 030675 159 LSEDERFLVVCE 170 (173)
Q Consensus 159 ~~~dg~~lyv~~ 170 (173)
|++|.+.|-++.
T Consensus 443 Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 443 FNHDAQILAIAS 454 (514)
T ss_pred eCcchhhhhhhh
Confidence 999998776653
No 129
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.41 E-value=0.01 Score=46.61 Aligned_cols=137 Identities=14% Similarity=0.118 Sum_probs=72.1
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL 84 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~ 84 (173)
.-..+.++++....+++ .+-.|+.|+. ... ...........+ ++..++.|.+++.+.......+-+ .+| ...+
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~-~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT-GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce-eeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 34455555655444333 4444555552 222 112222233446 999999999944444333222223 566 3332
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEccCC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDE 163 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~~dg 163 (173)
... . ........+++|||.|+.+ +.+++.|-.||...+. +..+...-.-...|+|+.+|
T Consensus 342 s~~--~-s~v~~ts~~fHpDgLifgt-----------------gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 342 SDE--T-SDVEYTSAAFHPDGLIFGT-----------------GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG 401 (506)
T ss_pred eec--c-ccceeEEeeEcCCceEEec-----------------cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence 221 1 1123577999999988776 2355777778876443 11111222334679999888
Q ss_pred CEEEE
Q 030675 164 RFLVV 168 (173)
Q Consensus 164 ~~lyv 168 (173)
=+|.+
T Consensus 402 Y~Lat 406 (506)
T KOG0289|consen 402 YWLAT 406 (506)
T ss_pred eEEEE
Confidence 55544
No 130
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.40 E-value=0.0097 Score=46.94 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEec-cCCccccCC
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQ-FNGSQLRFA 96 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~ 96 (173)
++.+|+...++.++.+|. +|+ ..|....+.+. .++. .++++ |++.....++.++. +|....... ..+.. .
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~-~~~~-~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~ 328 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQ-IVWKREYGSVN-DFAV-DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRL---L 328 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCC-EEEeecCCCcc-CcEE-ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCc---c
Confidence 678998888889999996 454 33433333344 4444 34566 88877778888985 663333221 11111 1
Q ss_pred ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
...++ .+|.+|+.+. +|.|+.+|+++|++
T Consensus 329 ~sp~v-~~g~l~v~~~------------------~G~l~~ld~~tG~~ 357 (394)
T PRK11138 329 TAPVL-YNGYLVVGDS------------------EGYLHWINREDGRF 357 (394)
T ss_pred cCCEE-ECCEEEEEeC------------------CCEEEEEECCCCCE
Confidence 22233 2678998853 37899999988865
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.013 Score=49.81 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=79.8
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEe
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS 86 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~ 86 (173)
....++++.+|...+.. .+-.|..++. |+..++.......|.+++.++|++++|.++.....+..++ .++ ......
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 35678888888777555 4555666653 4443333333445555999999999966554333344444 356 322222
Q ss_pred ccC-Ccc---ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-c--cCcceEE
Q 030675 87 QFN-GSQ---LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-L--YFANGVA 158 (173)
Q Consensus 87 ~~~-~~~---~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~--~~p~gi~ 158 (173)
... .-. -....-++++|+|. +.+.. .++.|..|+..+.+..-.... . ..-+-++
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------------------~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPP------------------VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeec------------------cCCeEEEEccCCceeheeecccccccceEEEE
Confidence 211 100 12345678999854 44432 236778888876654333322 2 2245788
Q ss_pred EccCCCEEEEE
Q 030675 159 LSEDERFLVVC 169 (173)
Q Consensus 159 ~~~dg~~lyv~ 169 (173)
|+|.|++|..+
T Consensus 240 wsPnG~YiAAs 250 (933)
T KOG1274|consen 240 WSPNGKYIAAS 250 (933)
T ss_pred EcCCCcEEeee
Confidence 99998766443
No 132
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.37 E-value=0.0015 Score=51.51 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=93.1
Q ss_pred CccCCcceEEEcC-CCCEEEEc-CCCeEEEEcC--CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc--cC
Q 030675 7 GIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP--NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EE 79 (173)
Q Consensus 7 ~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~--~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~ 79 (173)
|-.++...+.|-| .++|+.+. .++.|+.|+. +++..+ +........ .++|+.+|.- +.+...++-++++ ..
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr-d~~~s~~g~~-fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR-DASFNNCGTS-FLSASFDRFLKLWDTET 289 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh-hhhccccCCe-eeeeecceeeeeecccc
Confidence 3345667777888 78999877 7888888874 455543 433344455 8899999988 6666666666655 36
Q ss_pred C--cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcc
Q 030675 80 G--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFAN 155 (173)
Q Consensus 80 g--~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~ 155 (173)
| ...+... ..|..+.+.||+ +++++ +..+++|..+|..++++ ......+...+
T Consensus 290 G~~~~~f~~~------~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 290 GQVLSRFHLD------KVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ceEEEEEecC------CCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 7 3444322 357889999988 67776 34568999999987763 22334577788
Q ss_pred eEEEccCCCEE
Q 030675 156 GVALSEDERFL 166 (173)
Q Consensus 156 gi~~~~dg~~l 166 (173)
.|.|=++|+..
T Consensus 347 ~i~F~~~g~rF 357 (503)
T KOG0282|consen 347 DITFVDEGRRF 357 (503)
T ss_pred eeEEccCCceE
Confidence 89998888754
No 133
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.34 E-value=0.0099 Score=44.54 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=67.5
Q ss_pred eEEEcCCCCEEEEc-CCCeEEEEcCCCcEE---EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEe
Q 030675 14 DVSVDGNGVLYTAT-GDGWIKRMHPNGTWE---DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVS 86 (173)
Q Consensus 14 ~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~---~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~ 86 (173)
...|+|+|..+++. .+..|+-|+..|... +.....+... ++.+.+|++.++-|.....++.+|. .| ...+..
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~ 130 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG 130 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence 46789999999877 778898888666432 2234456778 9999999999566655566777774 66 222221
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS 140 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 140 (173)
.. ...|.+.....|-..++..+ .++++-.+|..
T Consensus 131 --h~---~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R 163 (338)
T KOG0265|consen 131 --HT---SFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIR 163 (338)
T ss_pred --cc---ceeeecCccccCCeEEEecC----------------CCceEEEEeec
Confidence 11 24555664555666665432 45677777765
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.0077 Score=51.08 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=75.2
Q ss_pred CEEEEcCCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEEEEeccCCccccCCc
Q 030675 22 VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQFNGSQLRFAN 97 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~~~~~~~~~~~ 97 (173)
++..+..++.|.++. +.+....+......|...++++.+|++ .++... ..|..++. |+ .+......++ ..-
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheeecccCC----cee
Confidence 444555677777776 344333232333334448999999998 544444 34555563 44 3333344433 356
Q ss_pred cEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--------cCc-ceEEEccCCCEEEE
Q 030675 98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------YFA-NGVALSEDERFLVV 168 (173)
Q Consensus 98 ~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~~p-~gi~~~~dg~~lyv 168 (173)
.+.++|+|++.++.. -+|.|+.|+.+++.+...+.++ ..+ +-++|+|++..+.+
T Consensus 143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 799999999877642 3488999998877655554432 111 34889999665554
No 135
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.0031 Score=51.15 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=63.9
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEecccc--CccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEe
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS 86 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~ 86 (173)
-..+.+|.+|.+|++..+| +++++. .|+........ ...+ .+..|..|++ ||.. ..|+++..+.| ......
T Consensus 167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~L-WVGT-dqGv~~~e~~G~~~sn~~~ 242 (671)
T COG3292 167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRL-WVGT-DQGVYLQEAEGWRASNWGP 242 (671)
T ss_pred ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcE-EEEe-ccceEEEchhhccccccCC
Confidence 3457888899999988765 888874 56665543332 2345 7888899999 8874 55788888776 222222
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
..|.....-+..|.+|++|++..
T Consensus 243 ---~lp~~~I~ll~qD~qG~lWiGTe 265 (671)
T COG3292 243 ---MLPSGNILLLVQDAQGELWIGTE 265 (671)
T ss_pred ---CCcchheeeeecccCCCEEEeec
Confidence 22334566678888999999753
No 136
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.28 E-value=0.013 Score=48.01 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=48.6
Q ss_pred ccccCCccEEEcC-CCcEEEEeCcCCcC-cccce-eeecccCCCceEEEEcCCCC-------eeEEee------------
Q 030675 91 SQLRFANDVIEAS-DGSLYFTVSSTKFT-PAEYY-LDLVSGEPHGVLLKYDPSTN-------QTSLVL------------ 148 (173)
Q Consensus 91 ~~~~~~~~l~~~~-dG~~~v~~~~~~~~-~~~~~-~~~~~~~~~~~v~~~d~~~~-------~~~~~~------------ 148 (173)
.++.+|.++.++| +|.+|++.....-. ..... .........|.|++++++.. ..+.+.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 3578999999999 57899986442200 00000 00012345689999998754 222221
Q ss_pred ------ccccCcceEEEccCCCEEEEEe
Q 030675 149 ------DGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 149 ------~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
..+..|.+|+|+++|+ |||++
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~e 453 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQE 453 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEe
Confidence 1267899999999998 55543
No 137
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.26 E-value=0.0055 Score=46.24 Aligned_cols=141 Identities=15% Similarity=0.185 Sum_probs=83.8
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC----cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG----TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT 82 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g----~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~ 82 (173)
++....|.|+|...+.++. .++.|--+|-.- +..++........ .|.|+|.|.++.+. ..+-+.++.. +-.+
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vr-siSfHPsGefllvg-TdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVR-SISFHPSGEFLLVG-TDHPTLRLYDVNTYQ 249 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceee-eEeecCCCceEEEe-cCCCceeEEecccee
Confidence 4556789999988888766 667676666322 1222234444556 89999999995554 4444555443 2222
Q ss_pred EEEe-ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEE
Q 030675 83 VLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVA 158 (173)
Q Consensus 83 ~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~ 158 (173)
-+.. ..+.+--...+.+..++.|++|+|-. .+|.|-.||--++++..- +.+........
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-----------------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTAS-----------------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEec-----------------cCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 2222 12222234678889999999999943 357777777543332111 22334445677
Q ss_pred EccCCCEEEE
Q 030675 159 LSEDERFLVV 168 (173)
Q Consensus 159 ~~~dg~~lyv 168 (173)
|+.+|+++.-
T Consensus 313 Ftkn~kyiLs 322 (430)
T KOG0640|consen 313 FTKNGKYILS 322 (430)
T ss_pred EccCCeEEee
Confidence 8888876653
No 138
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.25 E-value=0.025 Score=45.19 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CCCeEEEEccCC--cEEEEeccCCccccC
Q 030675 20 NGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVSEEG--VTVLVSQFNGSQLRF 95 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~i~~~~~~g--~~~~~~~~~~~~~~~ 95 (173)
+|.+++.-..|+.+.+++. |-...+...++.-...+..++++ . ++.. .+..+...+.+| .+.+... +..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~-~-vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~ 403 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEG-D-VIGTNDGDKLGIYDKDGGEVKRIEKD-----LGN 403 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcc-e-EEeccCCceEEEEecCCceEEEeeCC-----ccc
Confidence 6777765556777766653 33333322222111023333442 2 3333 334566666554 3444322 346
Q ss_pred CccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEE
Q 030675 96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVV 168 (173)
Q Consensus 96 ~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv 168 (173)
...+.+++||. +.+++.. ..||.+|.++|.++..... .....+++|+|+++++..
T Consensus 404 I~av~vs~dGK~~vvaNdr------------------~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDR------------------FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred eEEEEEcCCCcEEEEEcCc------------------eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence 67899999998 5555422 5899999999988777653 566788999999987643
No 139
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.22 E-value=0.029 Score=44.98 Aligned_cols=133 Identities=13% Similarity=0.140 Sum_probs=76.9
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEE
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL 84 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~ 84 (173)
-.+..+++.+|+..+|++. .++.+.-|+ +-+ ..|... ..... .+.|+|.| .+.+......-+.++... .-.+
T Consensus 368 ~delwgla~hps~~q~~T~gqdk~v~lW~-~~k-~~wt~~~~d~~~-~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQDKHVRLWN-DHK-LEWTKIIEDPAE-CADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred ccceeeEEcCCChhheeeccCcceEEEcc-CCc-eeEEEEecCcee-EeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 3578899999988877766 666666676 332 222222 22234 77888988 424433333445555332 2222
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSED 162 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~d 162 (173)
.. ++. ..+-++++|+|.++..-.. .+.=.|||++..+.+...+. .+ +....+.||+|
T Consensus 444 ~~--d~~---~ls~v~ysp~G~~lAvgs~---------------d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~D 502 (626)
T KOG2106|consen 444 HT--DNE---QLSVVRYSPDGAFLAVGSH---------------DNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSD 502 (626)
T ss_pred Ee--cCC---ceEEEEEcCCCCEEEEecC---------------CCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCC
Confidence 22 232 3466999999986665322 12236788888754443332 23 55578999999
Q ss_pred CCEE
Q 030675 163 ERFL 166 (173)
Q Consensus 163 g~~l 166 (173)
+++|
T Consensus 503 s~~~ 506 (626)
T KOG2106|consen 503 SQFL 506 (626)
T ss_pred CceE
Confidence 8854
No 140
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.21 E-value=0.00098 Score=34.84 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=29.0
Q ss_pred ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc
Q 030675 4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT 40 (173)
Q Consensus 4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~ 40 (173)
+....+..|.++++|+ ++.||++| ....|++.+.+|.
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 3344589999999999 56899999 5678888887664
No 141
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.21 E-value=0.037 Score=43.94 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=48.9
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g 80 (173)
+...+|+|..+|.+.++. .+|.+..|+.+|.+.........|...|.++.+|.+ +++... ..++.+|. .|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCc
Confidence 567889999999988776 788888899888765433333334338999999998 444433 44555553 66
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.019 Score=45.43 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CcceEEEcCCCCE-EEEcCCCeEEEEcCCCcE----EEeccccCccccceEEccCCc-EEEEEeCCCeEEEEcc-CC-cE
Q 030675 11 HPEDVSVDGNGVL-YTATGDGWIKRMHPNGTW----EDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-EG-VT 82 (173)
Q Consensus 11 ~p~~l~~~~~g~l-~~~~~~~~i~~~~~~g~~----~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~-~g-~~ 82 (173)
+..++.|+|.-.| .+++.++.+..+..||+. +.+.- ...|.-..+|.++|. .++++....-.+.+|. .+ +.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 4567999997654 466666655544445543 22211 223322678889998 4233322233555553 44 55
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d 162 (173)
.+... .+.+..+...+.+++++.+++..+ ..|.|+.....|++...-..-.....+++|+.|
T Consensus 294 k~~~~-~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 294 KLKPP-YGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred cccCC-CCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence 54332 233334667789999998666543 236788877766654333333445578999999
Q ss_pred CCEEEEE
Q 030675 163 ERFLVVC 169 (173)
Q Consensus 163 g~~lyv~ 169 (173)
++.||++
T Consensus 356 sk~l~~~ 362 (514)
T KOG2055|consen 356 SKELLAS 362 (514)
T ss_pred CcEEEEE
Confidence 9988886
No 143
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.19 E-value=0.016 Score=42.71 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred cccceEEccCCcEEEEEeCCCeEEEEccC-CcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccC
Q 030675 51 SLLGLTTTKENNVIIVCDSQQGLLKVSEE-GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129 (173)
Q Consensus 51 p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~ 129 (173)
.+ -++++-++++ ++...+.|.+.+-.- .++.+... ...+ ..---|.++|+|+.+.+ +.
T Consensus 150 ~n-e~~w~~~nd~-Fflt~GlG~v~ILsypsLkpv~si-~AH~-snCicI~f~p~GryfA~-----------------Gs 208 (313)
T KOG1407|consen 150 VN-EISWNNSNDL-FFLTNGLGCVEILSYPSLKPVQSI-KAHP-SNCICIEFDPDGRYFAT-----------------GS 208 (313)
T ss_pred ee-eeeecCCCCE-EEEecCCceEEEEecccccccccc-ccCC-cceEEEEECCCCceEee-----------------cc
Confidence 45 7778777777 555555444433221 12222211 1111 12345688999987766 22
Q ss_pred CCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEE
Q 030675 130 PHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLV 167 (173)
Q Consensus 130 ~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~ly 167 (173)
.+.-+..+|++..-+......+..| ..|.||.||++|.
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 4456667787644444555555555 5688888887653
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.18 E-value=0.042 Score=44.14 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=79.9
Q ss_pred CcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccC
Q 030675 11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN 89 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~ 89 (173)
.++-++-. .+.||++...+.|++=+.++..... ..+..... |++.++...+ |++....+.++++.+..-.+...+.
T Consensus 331 ~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q-~~T~gqdk~v~lW~~~k~~wt~~~~ 407 (626)
T KOG2106|consen 331 PIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQ-LLTCGQDKHVRLWNDHKLEWTKIIE 407 (626)
T ss_pred CeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhh-eeeccCcceEEEccCCceeEEEEec
Confidence 34444422 4469998877788877665543332 23344667 9999998888 7766666666666544111222221
Q ss_pred CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
.....+.++|.|.+-+.. ..|+.+.+|.++.....+...-...+-+.++|||.+|.|.
T Consensus 408 ----d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 408 ----DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred ----CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence 134568888988544442 3378888888764433333333334668888888877664
No 145
>PTZ00420 coronin; Provisional
Probab=97.15 E-value=0.093 Score=43.53 Aligned_cols=70 Identities=4% Similarity=-0.064 Sum_probs=43.9
Q ss_pred CCcceEEEcCCCC-EEEE-cCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 10 NHPEDVSVDGNGV-LYTA-TGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~-~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
....+++|+|++. ++++ ..++.|..||.. ++............ .++|+++|++|..+.....+..+|. .+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 3467899999775 4444 478889999864 44322122334567 8999999999444433344555564 45
No 146
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.15 E-value=0.074 Score=41.00 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=75.7
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEE
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLV 85 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~ 85 (173)
-..++.+|+-++.++. .+..-+.|+. +|.+. .......... .+.|+.+|.+ +++..-.+.+++. ..| .+...
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~Fshdgtl-LATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTL-LATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceE-EEecCCCccEEEEEcccCceEEEe
Confidence 3457777866777666 5555566653 45432 2333344566 8899999987 5443334544444 355 33222
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDER 164 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~ 164 (173)
. ... .-..=|..+|.+.++++ +..+|.+|.|...++....+..+...| +-=.|.|||+
T Consensus 145 ~-~e~---~dieWl~WHp~a~illA-----------------G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 145 D-QEV---EDIEWLKWHPRAHILLA-----------------GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred e-ccc---CceEEEEecccccEEEe-----------------ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 1 111 11222677888776665 345688888887654444444443333 2336778888
Q ss_pred EEEEEe
Q 030675 165 FLVVCE 170 (173)
Q Consensus 165 ~lyv~~ 170 (173)
.+....
T Consensus 204 r~~tgy 209 (399)
T KOG0296|consen 204 RILTGY 209 (399)
T ss_pred eEEEEe
Confidence 776643
No 147
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.026 Score=44.54 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=79.9
Q ss_pred ceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEcc---------CC
Q 030675 13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---------EG 80 (173)
Q Consensus 13 ~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---------~g 80 (173)
.+|+-+|.|.+.++. ..+.||.|. .+|.+..+ ..+.-... .|.|..||.+ +++...++.+.++. ++
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcE-EEecCCCccEEEEEEEeecccccCC
Confidence 467777899877766 778999998 46775543 33333455 9999999999 77766655443331 11
Q ss_pred -cEEEEeccCCccccCCccEEEcCCC---cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcce
Q 030675 81 -VTVLVSQFNGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156 (173)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~l~~~~dG---~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~g 156 (173)
...+.. ..+.. ....+|.+.+-| ++|-+ +.+.++-.||...+.+-.-..-...++.
T Consensus 163 ~~~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~Ta------------------S~D~t~k~wdlS~g~LLlti~fp~si~a 222 (476)
T KOG0646|consen 163 SVKPLHI-FSDHT-LSITDLQIGSGGTNARLYTA------------------SEDRTIKLWDLSLGVLLLTITFPSSIKA 222 (476)
T ss_pred Cccceee-eccCc-ceeEEEEecCCCccceEEEe------------------cCCceEEEEEeccceeeEEEecCCccee
Confidence 111111 00000 133455555432 23333 2345666666665654333333566689
Q ss_pred EEEccCCCEEEEEe
Q 030675 157 VALSEDERFLVVCE 170 (173)
Q Consensus 157 i~~~~dg~~lyv~~ 170 (173)
++++|.++.+||..
T Consensus 223 v~lDpae~~~yiGt 236 (476)
T KOG0646|consen 223 VALDPAERVVYIGT 236 (476)
T ss_pred EEEcccccEEEecC
Confidence 99999999999853
No 148
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.13 E-value=0.094 Score=45.30 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=72.5
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCC-----cEE----EeccccCccccceEEccC-CcEEEEEeCCCeEEEEc-c-
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG-----TWE----DWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS-E- 78 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-----~~~----~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~-~- 78 (173)
..+++|+++|.++++. .++.|..|+... ... .......... ++++++. +++ +++...++.++++ .
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~-las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQ-VASSNFEGVVQVWDVA 563 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCE-EEEEeCCCeEEEEECC
Confidence 5678999999877555 788888887432 110 0011122345 7888764 566 4444444555554 3
Q ss_pred CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcc
Q 030675 79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN 155 (173)
Q Consensus 79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~ 155 (173)
.+ ...+. ... .....++++| +|.++++-. .++.|..||..++.............
T Consensus 564 ~~~~~~~~~-~H~----~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~ 621 (793)
T PLN00181 564 RSQLVTEMK-EHE----KRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANIC 621 (793)
T ss_pred CCeEEEEec-CCC----CCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeE
Confidence 34 22221 111 3467899986 777777632 34678888877654433222223344
Q ss_pred eEEEc-cCCCEEEE
Q 030675 156 GVALS-EDERFLVV 168 (173)
Q Consensus 156 gi~~~-~dg~~lyv 168 (173)
.+.|+ ++++.+.+
T Consensus 622 ~v~~~~~~g~~lat 635 (793)
T PLN00181 622 CVQFPSESGRSLAF 635 (793)
T ss_pred EEEEeCCCCCEEEE
Confidence 56663 34554444
No 149
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.043 Score=41.57 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCc--EEEeccccCccccceEEccCCc--EEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEc
Q 030675 28 GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENN--VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEA 102 (173)
Q Consensus 28 ~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~--l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~ 102 (173)
.+..|+.||...+ ...+..+.+..+ .+.|.+.-. . .++...++.+.++..| .+.+.. ..+.. ...++++++
T Consensus 61 sDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~s-lK~H~-~~Vt~lsiH 136 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKS-LKAHK-GQVTDLSIH 136 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhh-eeeecCCCcEEEEEcCCeEEeee-ecccc-cccceeEec
Confidence 6677888885432 223334456666 888876541 3 2333445555555544 333222 11111 348999999
Q ss_pred CCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 103 ~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
|.|++-++-+. ++.+-.+|.-+|+...+..--..+.-+.|+|.|.+.|+.
T Consensus 137 PS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 137 PSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence 99998777432 345555665555554444434455567888888766664
No 150
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.12 E-value=0.0012 Score=34.49 Aligned_cols=27 Identities=26% Similarity=0.132 Sum_probs=22.9
Q ss_pred eeccccCcceEEEccCCCEEEEEecCC
Q 030675 147 VLDGLYFANGVALSEDERFLVVCESWK 173 (173)
Q Consensus 147 ~~~~~~~p~gi~~~~dg~~lyv~~~~~ 173 (173)
+..+...|+|++|++.++.||++|..+
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~ 30 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGL 30 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCC
Confidence 445688899999999999999999753
No 151
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.10 E-value=0.023 Score=40.43 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=58.4
Q ss_pred cceEEEcCCCCEE-EEc--CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC--Ce-EEEEccCCcEEEE
Q 030675 12 PEDVSVDGNGVLY-TAT--GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--QG-LLKVSEEGVTVLV 85 (173)
Q Consensus 12 p~~l~~~~~g~l~-~~~--~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~--~~-i~~~~~~g~~~~~ 85 (173)
...++|.|+|.-+ +.. ....|..++..++...-.. ....+ .+.++|+|+++.++..+ .+ +...|....+.+.
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 6789999988543 332 4457778887655433211 23445 89999999996666544 23 4444433333332
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
.... .....++.+|||+.+++..
T Consensus 140 ~~~~----~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 140 TFEH----SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cccc----CcEEEEEEcCCCCEEEEEE
Confidence 2211 2468899999999877753
No 152
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.08 E-value=0.071 Score=39.62 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=65.9
Q ss_pred CCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCC----Ce---EEEEccC-----CcEEEEeccCCccccC
Q 030675 29 DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QG---LLKVSEE-----GVTVLVSQFNGSQLRF 95 (173)
Q Consensus 29 ~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~---i~~~~~~-----g~~~~~~~~~~~~~~~ 95 (173)
+..+.-|| ++|+............ .+.|+.+|+++.++... .+ ++.+..+ +.+.+..... +-..
T Consensus 73 D~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~~sk 149 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--PDSK 149 (327)
T ss_pred cceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--Cccc
Confidence 33344444 3444333233344456 88899999885555422 22 2222211 1222222211 1145
Q ss_pred CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeec-cccCcceEEEccCCCEEEEE
Q 030675 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLD-GLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~p~gi~~~~dg~~lyv~ 169 (173)
++....+|-|...|+- ..+|.|.+||..+|+. ..... .....|.|++++|.. .+++
T Consensus 150 it~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT 207 (327)
T KOG0643|consen 150 ITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFIT 207 (327)
T ss_pred eeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEe
Confidence 6777788877766652 3568999999988743 22222 245779999999975 5554
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.08 E-value=0.011 Score=49.81 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=84.8
Q ss_pred CCcceEEEcCCCC-EEEEcCCCeEEEEcCCCcEE--Eec---cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030675 10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWE--DWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT 82 (173)
Q Consensus 10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g~~~--~~~---~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~ 82 (173)
....++++++=|+ .+++...|.|-+++....+. .+. ...+... |++.|.-+++ .|+...+|++.++. .+..
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~-~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRL-LVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCce-EEEccCcceEEEEecCCcc
Confidence 3456788888665 44555888999998543322 231 2233456 9999988888 77766778887775 3322
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~ 161 (173)
.....--+ ..+..+..+..-.+++.. ..+=.|..+|..|.++ +.........+.++|||
T Consensus 527 l~~~l~l~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 527 LKKSLRLG---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eeeeeccC---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 11111111 245556666543333321 0123788888876543 33344456789999999
Q ss_pred CCCEEEEEec
Q 030675 162 DERFLVVCES 171 (173)
Q Consensus 162 dg~~lyv~~~ 171 (173)
|||+|..+..
T Consensus 587 DgrWlisasm 596 (910)
T KOG1539|consen 587 DGRWLISASM 596 (910)
T ss_pred CCcEEEEeec
Confidence 9999988764
No 154
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.05 E-value=0.02 Score=42.12 Aligned_cols=94 Identities=13% Similarity=0.130 Sum_probs=59.1
Q ss_pred CcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEc-cCC--cEEEE
Q 030675 11 HPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEG--VTVLV 85 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~-~~g--~~~~~ 85 (173)
.+..+.+.++|++......+.|..||+.. .+.+-...+-... ...++|+-.+ |||.... .++++| .+| ...+.
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~-SASL~P~k~~-fVaGged~~~~kfDy~TgeEi~~~n 263 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVE-SASLHPKKEF-FVAGGEDFKVYKFDYNTGEEIGSYN 263 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccc-cccccCCCce-EEecCcceEEEEEeccCCceeeecc
Confidence 35667788899888777777788888643 2222222222233 4456788777 9987664 477777 466 23221
Q ss_pred eccCCccccCCccEEEcCCCcEEEE
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
... +.-.+.+.++|||.+|.+
T Consensus 264 kgh----~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 264 KGH----FGPVHCVRFSPDGELYAS 284 (334)
T ss_pred cCC----CCceEEEEECCCCceeec
Confidence 222 234578999999999997
No 155
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.01 E-value=0.041 Score=43.04 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe-ccCCccccCC
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS-QFNGSQLRFA 96 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~ 96 (173)
++.+|++..++.++.++. +|+. .|........ .+++ .++++ |++.....++.++. +|...... ...+.....|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~~~-~p~~-~~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp 316 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRV-LWKRDASSYQ-GPAV-DDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAP 316 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcE-EEeeccCCcc-CceE-eCCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence 568888888889999996 5543 3322222333 4444 34455 88876667888885 66322221 2222211222
Q ss_pred ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030675 97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 145 (173)
.+. ++.+|+.+. +|.|+.+|+++|+..
T Consensus 317 ---~i~-g~~l~~~~~------------------~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 317 ---AVV-GGYLVVGDF------------------EGYLHWLSREDGSFV 343 (377)
T ss_pred ---EEE-CCEEEEEeC------------------CCEEEEEECCCCCEE
Confidence 332 457888753 378999998877653
No 156
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.09 Score=40.67 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=60.1
Q ss_pred cceEEEcCCCCEEEEc--CCCeEEEEcCC-CcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC---cEE
Q 030675 12 PEDVSVDGNGVLYTAT--GDGWIKRMHPN-GTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTV 83 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~--~~~~i~~~~~~-g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g---~~~ 83 (173)
...+.+.++|..+++. .+..|+.|+++ |....+. ...+... -|.++|||+. ++|..-++++++. .+. .+.
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s-lLkwSPdgd~-lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS-LLKWSPDGDV-LFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee-eEEEcCCCCE-EEEecccceeeeehhcccceecc
Confidence 4568888899888766 55678899875 4444443 2233343 5789999999 6666677888887 333 222
Q ss_pred EEeccCCccccCCccEEEcCCCc-EEEEeC
Q 030675 84 LVSQFNGSQLRFANDVIEASDGS-LYFTVS 112 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~ 112 (173)
..- .. .+.-.-..+|.|+ +.++..
T Consensus 276 w~l-gs----grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 276 WIL-GS----GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eec-cC----CceeeeeecCCCCEEEEEEc
Confidence 211 11 2566778999996 555543
No 157
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.91 E-value=0.087 Score=41.92 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=75.7
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEc-CC-CcEEEec-------cccCccccceEEccCCcEEEEEeCCCeEEEEc-c-
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMH-PN-GTWEDWH-------QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E- 78 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~-g~~~~~~-------~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~- 78 (173)
...++-|+|.|.|..+. .++.+..|+ .+ +....+. .....|...+..++.-.+..++...+..+++. .
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 34567788877777555 555555554 12 2111111 11122321222233322213333344455544 2
Q ss_pred CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcce
Q 030675 79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156 (173)
Q Consensus 79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~g 156 (173)
.| ...+.+.- .-..+++++|+|+...+ +..++.|..++..++++-.--.+-...+.
T Consensus 441 ~gv~i~~f~kH~-----~pVysvafS~~g~ylAs-----------------Gs~dg~V~iws~~~~~l~~s~~~~~~Ife 498 (524)
T KOG0273|consen 441 SGVPIHTLMKHQ-----EPVYSVAFSPNGRYLAS-----------------GSLDGCVHIWSTKTGKLVKSYQGTGGIFE 498 (524)
T ss_pred CCceeEeeccCC-----CceEEEEecCCCcEEEe-----------------cCCCCeeEeccccchheeEeecCCCeEEE
Confidence 55 33343321 24578999999986665 23457888888877776555555556778
Q ss_pred EEEccCCCEEEEEe
Q 030675 157 VALSEDERFLVVCE 170 (173)
Q Consensus 157 i~~~~dg~~lyv~~ 170 (173)
++|+.+|..|-++.
T Consensus 499 l~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 499 LCWNAAGDKLGACA 512 (524)
T ss_pred EEEcCCCCEEEEEe
Confidence 99999998776654
No 158
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.91 E-value=0.0068 Score=46.56 Aligned_cols=153 Identities=13% Similarity=0.105 Sum_probs=79.5
Q ss_pred CccCCcceEEEcCCC-CEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--
Q 030675 7 GIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-- 80 (173)
Q Consensus 7 ~~~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-- 80 (173)
|--++..++|-+|+. ..+++. .+|.|..||...+ ...+....+... ||+++. +.++++.+ +..+-++..+|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~-~~~~tvgd-DKtvK~wk~~~~p 140 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQ-TSFFTVGD-DKTVKQWKIDGPP 140 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecc-cceEEecC-CcceeeeeccCCc
Confidence 334667788888866 444444 8899999996553 233444556677 999987 45534443 33333333333
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCC---------------cCcc--------cc-eeeecccCCCceEEE
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK---------------FTPA--------EY-YLDLVSGEPHGVLLK 136 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~---------------~~~~--------~~-~~~~~~~~~~~~v~~ 136 (173)
...+... ....+|.-...+.+++|++..- ++.+ +. ...+.....+++|+.
T Consensus 141 ~~tilg~------s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 141 LHTILGK------SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred ceeeecc------ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 2211110 1122232222333444332110 0000 00 011222346789999
Q ss_pred EcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 137 YDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 137 ~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
||+.++.+..-..--..+|+|+|+| +.+.+++
T Consensus 215 yD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMRTNTICWNP-EAFNFVA 246 (433)
T ss_pred EecccCCccceeeeeccccceecCc-cccceee
Confidence 9998776433333346689999999 4455554
No 159
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.91 E-value=0.055 Score=39.38 Aligned_cols=145 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred eecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CCc------EEEeccc-cCccccceEEccCCcEEEEEeCCCeE
Q 030675 3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NGT------WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGL 73 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g~------~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i 73 (173)
+++.+ ..+-.-|+..|+|.||....+ .+++..+ ++. -.++... -..=. .|.+++.|-+ |.......+
T Consensus 28 ~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~L-YaV~~~G~l 103 (229)
T PF14517_consen 28 TIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVL-YAVTPDGKL 103 (229)
T ss_dssp EEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-E-EEEETT-EE
T ss_pred hcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccE-EEeccccce
Confidence 45555 566778899999999987744 7888841 221 1122122 11234 7889999988 876655467
Q ss_pred EEEcc--CC-cEE---EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEE-cCCCC----
Q 030675 74 LKVSE--EG-VTV---LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTN---- 142 (173)
Q Consensus 74 ~~~~~--~g-~~~---~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~---- 142 (173)
++... ++ ... ....+-...-+....+-.+++|.||+.+ +++++++. .|..+
T Consensus 104 yR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~~~~~W 165 (229)
T PF14517_consen 104 YRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDGGSDRW 165 (229)
T ss_dssp EEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SSTT--H
T ss_pred eeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCCCCCcc
Confidence 77762 22 111 1111111112346778999999999985 33677776 34322
Q ss_pred --eeEEe-eccccCcceEEEccCCCEEEEEe
Q 030675 143 --QTSLV-LDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 143 --~~~~~-~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
...++ ..+.....-|.++|++. ||..+
T Consensus 166 ~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~ 195 (229)
T PF14517_consen 166 LSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK 195 (229)
T ss_dssp HHH-EEEESSSGGGEEEEEE-TTS--EEEE-
T ss_pred ccccceeccCCcccceEEeeCCCCc-EEEEe
Confidence 11122 23445567788899885 66554
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.083 Score=43.71 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=85.0
Q ss_pred CCcceEEEcCCCCEEE-Ec-CCCeEEEEcCCCcEEEe--c--cccCccccceEEccCCcEEEEEeCC-CeEEEEccC-C-
Q 030675 10 NHPEDVSVDGNGVLYT-AT-GDGWIKRMHPNGTWEDW--H--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEE-G- 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~-~~-~~~~i~~~~~~g~~~~~--~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~-g- 80 (173)
+.-.+-+..|+|.+.. +. .+-+||++.+++.+... . .....+...+.|.-|+++++++... ..+..+..+ .
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps 462 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS 462 (691)
T ss_pred cceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence 4456677888998774 33 67789999887743321 1 1112222256666666555555422 234444432 2
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEE
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVAL 159 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~ 159 (173)
...+............+.|+.+++|+.+++-. ..+.|+.|+.++++.+.+...+.. ...+++
T Consensus 463 ~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~ 525 (691)
T KOG2048|consen 463 FKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAF 525 (691)
T ss_pred hhhhhccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeec
Confidence 33332222222235678899999998555432 237899999998877666644433 245677
Q ss_pred cc-CCCEEEEEecC
Q 030675 160 SE-DERFLVVCESW 172 (173)
Q Consensus 160 ~~-dg~~lyv~~~~ 172 (173)
+| +...|.|+.++
T Consensus 526 ~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 526 SPFVRNRLVVATSN 539 (691)
T ss_pred cccccCcEEEEecC
Confidence 74 55567777653
No 161
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.88 E-value=0.058 Score=46.22 Aligned_cols=140 Identities=14% Similarity=0.234 Sum_probs=80.1
Q ss_pred CcceEEEcC-CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccCccccceEEc------cCCcEEEEEeCCCeEEEEcc-
Q 030675 11 HPEDVSVDG-NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTT------KENNVIIVCDSQQGLLKVSE- 78 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~------~~g~l~~v~~~~~~i~~~~~- 78 (173)
.|.-+..+. +..+.+-+ ....||++|. .|+++ .|...-..|...++-+ -.... |++-..++++++|+
T Consensus 482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR 560 (794)
T PF08553_consen 482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPR 560 (794)
T ss_pred CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccC
Confidence 344444444 44666655 4568999996 56654 3432221211122221 12356 77777888999995
Q ss_pred -CCcEEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-c
Q 030675 79 -EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-N 155 (173)
Q Consensus 79 -~g~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~ 155 (173)
.|...+... ..-...+....++.+.+|.|-|++. .|.|-.||.-+.+......++..| .
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII 622 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence 452111111 1111223456688889999988853 377777885433333334455455 6
Q ss_pred eEEEccCCCEEEEE
Q 030675 156 GVALSEDERFLVVC 169 (173)
Q Consensus 156 gi~~~~dg~~lyv~ 169 (173)
||.++.||++|..|
T Consensus 623 ~iDvt~DGkwilaT 636 (794)
T PF08553_consen 623 GIDVTADGKWILAT 636 (794)
T ss_pred EEEecCCCcEEEEe
Confidence 99999999988764
No 162
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.12 Score=38.40 Aligned_cols=106 Identities=13% Similarity=0.173 Sum_probs=67.7
Q ss_pred eecCCccCCcceEEEcCC-CCEEEEc-CCCeEEEEcCC-Cc-E--EEeccc--cCccccceEEccCCcEEEEEeCCCeEE
Q 030675 3 KLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPN-GT-W--EDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLL 74 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~-g~-~--~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~~i~ 74 (173)
+..++-...-..+|++|. |.++.+. .+..|..++.. +. + ..+.+. -.... .++++|.|++ +.+.......
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~-La~aSFD~t~ 85 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRY-LASASFDATV 85 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcE-EEEeeccceE
Confidence 444555566788999996 8877665 56666667654 32 2 122221 22456 8999999998 6666666666
Q ss_pred EEcc--CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030675 75 KVSE--EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 75 ~~~~--~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
.+.. ++ ++-+. .++|.. +-.-.++++++|+++.|+.
T Consensus 86 ~Iw~k~~~efecv~-~lEGHE-nEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 86 VIWKKEDGEFECVA-TLEGHE-NEVKCVAWSASGNYLATCS 124 (312)
T ss_pred EEeecCCCceeEEe-eeeccc-cceeEEEEcCCCCEEEEee
Confidence 6653 45 55543 334432 4456789999999999864
No 163
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.034 Score=42.33 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=73.0
Q ss_pred cCCcceEEEcCCCC-EEEEcCCCeEEEEc--CCCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC--
Q 030675 9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH--PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG-- 80 (173)
Q Consensus 9 ~~~p~~l~~~~~g~-l~~~~~~~~i~~~~--~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g-- 80 (173)
.++..++.|+.++. +.-+..+ ...|+. +.|+.. .+.......+ ...|.+||.. +++...++.++++. .+
T Consensus 306 tkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEfrGHsSyvn-~a~ft~dG~~-iisaSsDgtvkvW~~KtteC 382 (508)
T KOG0275|consen 306 TKGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEFRGHSSYVN-EATFTDDGHH-IISASSDGTVKVWHGKTTEC 382 (508)
T ss_pred ccCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHhcCcccccc-ceEEcCCCCe-EEEecCCccEEEecCcchhh
Confidence 34556666766553 3332222 233333 345432 2333444566 7889999998 66656666666663 33
Q ss_pred cEEEEeccCCccccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeecc----ccC
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDG----LYF 153 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~----~~~ 153 (173)
..++...... ...|.+.+-|.. .+.|++. +++++..+.. |++ +-+..+ ..+
T Consensus 383 ~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNr------------------sntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 383 LSTFKPLGTD---YPVNSVILLPKNPEHFIVCNR------------------SNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred hhhccCCCCc---ccceeEEEcCCCCceEEEEcC------------------CCeEEEEecc-ceEEeeeccCCccCCce
Confidence 4444332222 245667777754 3555532 2578888776 443 322222 111
Q ss_pred cceEEEccCCCEEEEE
Q 030675 154 ANGVALSEDERFLVVC 169 (173)
Q Consensus 154 p~gi~~~~dg~~lyv~ 169 (173)
-..++||.|.++|+.
T Consensus 441 -i~~~lSpkGewiYci 455 (508)
T KOG0275|consen 441 -INAILSPKGEWIYCI 455 (508)
T ss_pred -EEEEecCCCcEEEEE
Confidence 135779999999975
No 164
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.052 Score=43.42 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=54.2
Q ss_pred ceEEEcCCCC-EEEEc-CC--CeEEEEcCCCcEE-EeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCC--cE
Q 030675 13 EDVSVDGNGV-LYTAT-GD--GWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG--VT 82 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~-~~--~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g--~~ 82 (173)
...+|.|+|+ |.++. .+ -.||.+|.+++.. ++....+.-. .-.++|||+.++++... ..|++++.+| .+
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 4467888884 44544 33 3588888776543 3323233333 45588999876554333 2588889877 44
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
.+..... ....-.++|||..++-+
T Consensus 320 riT~~~~-----~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 320 RLTFSGG-----GNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EeeccCC-----CCcCccCCCCCCEEEEE
Confidence 4432221 22256778999755543
No 165
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.80 E-value=0.046 Score=45.60 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=82.1
Q ss_pred EEEcCCCCEEEEcCCCeEEEEc-CCCcE-EEec--cccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC--cEEEEe
Q 030675 15 VSVDGNGVLYTATGDGWIKRMH-PNGTW-EDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS 86 (173)
Q Consensus 15 l~~~~~g~l~~~~~~~~i~~~~-~~g~~-~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g--~~~~~~ 86 (173)
++|+++|...++..+..|..+| .+|+. .... +...... .+++.+|+..||.+- ..++.++. +.| .+.+..
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa 102 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKA 102 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEee-ccceEEEEEcccchHhHhHhh
Confidence 8999999877777667788887 46665 3322 2234556 888999998856554 44566665 355 332222
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDER 164 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~ 164 (173)
... .| .-.|+++|.|.+..+ +..++++-.+|-..+.......+++.+ ..+.|.|+-.
T Consensus 103 ~He-~P---vi~ma~~~~g~LlAt-----------------ggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 103 IHE-AP---VITMAFDPTGTLLAT-----------------GGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred ccC-CC---eEEEEEcCCCceEEe-----------------ccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 111 12 245899999876665 224578888888878887777775444 5678877643
No 166
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.80 E-value=0.16 Score=39.24 Aligned_cols=106 Identities=11% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCEEEEc-----CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-C--------eEEEEc-cCCcEEE
Q 030675 21 GVLYTAT-----GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-Q--------GLLKVS-EEGVTVL 84 (173)
Q Consensus 21 g~l~~~~-----~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~--------~i~~~~-~~g~~~~ 84 (173)
.++||.| ..++++.+|.+ ++..-..+.+-.+ .++++++|+.+|+++.. . -++.+. ...+...
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 3678777 34688999864 4544444444445 46789999998988743 1 134433 3332222
Q ss_pred Ee-ccCCc----cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 85 VS-QFNGS----QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 85 ~~-~~~~~----~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
.+ .++.+ ....++.++++.||+ +||.+.. +..+|-.+|.+.+++
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kv 130 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKV 130 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCce
Confidence 21 12222 245789999999997 7777532 445777777776554
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.097 Score=40.85 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=35.0
Q ss_pred ceEEEcCCCCEEEEc-CCCeEEEEc-CCCcE-EEeccccCccccceEEccCCcEEEEEeCC
Q 030675 13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 13 ~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
..+++..+|.+..+. .+|.+..|+ |+-.. .......+... .|.|++||++ +++-..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~-lasig~ 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKF-LASIGA 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcE-EEEecC
Confidence 567787787776554 677776666 54332 22233455677 8999999987 544433
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.12 Score=42.78 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=61.6
Q ss_pred CCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccC--CcEEEE
Q 030675 10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE--GVTVLV 85 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~--g~~~~~ 85 (173)
...|+|+|.++|+||-.+.+|.|..||+ +++... ....++... .++.++.+..+.|.... |++....- +.-++.
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~ 147 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDD-GVLYDFSIGPDKITYK 147 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCC-ceEEEEecCCceEEEE
Confidence 4578999999999998888899999996 555443 333455667 88898877665554323 33333332 222222
Q ss_pred eccCCccccCCccEEEcCCCc-EEEE
Q 030675 86 SQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
..+ .++-.+.-.+.++++|. +..+
T Consensus 148 r~l-~rq~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 148 RSL-MRQKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred eec-ccccceEEEEEecCCccEEEec
Confidence 222 22224667788889887 4443
No 169
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=96.75 E-value=0.0081 Score=31.61 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=30.0
Q ss_pred CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccCcceEEEcc
Q 030675 105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE 161 (173)
Q Consensus 105 G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~p~gi~~~~ 161 (173)
++||++|... ..+|.+.+.++...+.+ ...+..|+|||+++
T Consensus 1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 4799998652 12889999886654444 45699999999864
No 170
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.69 E-value=0.015 Score=42.24 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=58.6
Q ss_pred eecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CC--cE-----EEecccc-CccccceEEccCCcEEEEEeCCCe
Q 030675 3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NG--TW-----EDWHQVG-SQSLLGLTTTKENNVIIVCDSQQG 72 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g--~~-----~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~~~ 72 (173)
++..+.-..=..|.+++.|.||....++.++|... ++ .+ .++.... .... .+-++++|.| |+-.....
T Consensus 74 ~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvL-Y~i~~dg~ 151 (229)
T PF14517_consen 74 QIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVL-YAITPDGR 151 (229)
T ss_dssp EEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-E-EEEETTE-
T ss_pred ccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccE-EEEcCCCc
Confidence 45555222333799999999997777899998863 22 11 1221111 2245 6777889988 87664444
Q ss_pred EEEEc-cCC-------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030675 73 LLKVS-EEG-------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST 141 (173)
Q Consensus 73 i~~~~-~~g-------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 141 (173)
+++.. +++ ...+.. +.....+..|...|+|.||.++. +|.|||..+.+
T Consensus 152 ~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~ 207 (229)
T PF14517_consen 152 LYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ 207 (229)
T ss_dssp EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred eEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence 55552 322 112211 11123477899999999999842 37999988764
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.66 E-value=0.039 Score=43.00 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=37.8
Q ss_pred ccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEe-ccccCccccceEEccCCcE
Q 030675 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDW-HQVGSQSLLGLTTTKENNV 63 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~-~~~~~~p~~gl~~~~~g~l 63 (173)
-.+.+-.++|.+++...++. .+..++.||. .|.+... .+....+. |.++|+-.++
T Consensus 122 h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~qy 179 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLNQY 179 (434)
T ss_pred cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhhhh
Confidence 34567789999988655444 7777888884 5766543 44556788 8888876554
No 172
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.61 E-value=0.41 Score=41.46 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=71.1
Q ss_pred CcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEc-cCCcEEEEEeCCCeEEEEcc-CCcEEEE
Q 030675 11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVSE-EGVTVLV 85 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~-~~g~l~~v~~~~~~i~~~~~-~g~~~~~ 85 (173)
...+++++| ++.++++. .++.|..||. ++............. .+.+. ++|+++.++.....|..++. ++...+.
T Consensus 577 ~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~-~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~ 655 (793)
T PLN00181 577 RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655 (793)
T ss_pred CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence 356788987 67766544 7788888885 344332222223445 67774 56787444443334554553 3321111
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC------e-eEEeeccccCcceEE
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN------Q-TSLVLDGLYFANGVA 158 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~-~~~~~~~~~~p~gi~ 158 (173)
.. .+.. .....+.+. ++..+++.. .++.|..||...+ . +..+.......+.++
T Consensus 656 ~~-~~h~-~~V~~v~f~-~~~~lvs~s-----------------~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 656 TM-IGHS-KTVSYVRFV-DSSTLVSSS-----------------TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred Ee-cCCC-CCEEEEEEe-CCCEEEEEE-----------------CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 11 1110 234556665 555555421 3356777776422 1 122222233446788
Q ss_pred EccCCCEEEEE
Q 030675 159 LSEDERFLVVC 169 (173)
Q Consensus 159 ~~~dg~~lyv~ 169 (173)
|++++++|...
T Consensus 716 ~s~~~~~lasg 726 (793)
T PLN00181 716 LSVSDGYIATG 726 (793)
T ss_pred EcCCCCEEEEE
Confidence 89888766554
No 173
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.22 Score=39.70 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=80.0
Q ss_pred cCCcceEEEcC-CCCEEEEc-CCCeEEEEcC--CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030675 9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP--NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT 82 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~--~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~ 82 (173)
.+...+.++.| +++++++. .+|.|.-||. .+. ...+ .++-... .+.+-+.|.+ +++..++.+-.+|. .|-.
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe-~vl~lpsgs~-iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVE-SVLALPSGSL-IASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCcee-eEEEcCCCCE-EEEcCCCeEEEEEecCCce
Confidence 35567788888 67888877 8888888873 222 2232 2232334 6777788888 77777776666664 3522
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~ 161 (173)
.+...... ......|++..+++=.++ ..-++.|-.||..+-++..-+. ++.| -.|+++|
T Consensus 230 ll~~~~~H--~KtVTcL~l~s~~~rLlS-----------------~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~ 289 (487)
T KOG0310|consen 230 LLTSMFNH--NKTVTCLRLASDSTRLLS-----------------GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP 289 (487)
T ss_pred ehhhhhcc--cceEEEEEeecCCceEee-----------------cccccceEEEEccceEEEEeee-cccceeeEEecC
Confidence 22221110 124566888888753333 1245677777743222211111 3333 3689999
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
|.+++++.
T Consensus 290 dd~t~viG 297 (487)
T KOG0310|consen 290 DDQTVVIG 297 (487)
T ss_pred CCceEEEe
Confidence 99988874
No 174
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.59 E-value=0.18 Score=41.59 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEE--Eecccc--C--------ccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWE--DWHQVG--S--------QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~--~~~~~~--~--------~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
+|.||+++..+.|+.+|. +|+.. .-.... . ... ++++. ++++ |++.....++.+|. +|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v-~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKV-FFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEE-EEEcCCCEEEEEECCCC
Confidence 789999988889999995 56432 111100 0 113 44553 4566 88776667999995 77
No 175
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.58 E-value=0.012 Score=45.57 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=59.9
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeeccc
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG 128 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~ 128 (173)
... .+.|+|+|+. .++..++..+++++ +-.+.+.. ..+. .++.-.++.+|||..+++ +
T Consensus 117 ~Vl-~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-~KgH-~~WVlcvawsPDgk~iAS-----------------G 175 (480)
T KOG0271|consen 117 AVL-SVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-CKGH-KNWVLCVAWSPDGKKIAS-----------------G 175 (480)
T ss_pred cEE-EEEecCCCce-EEecCCCceEEeeccCCCCccee-ecCC-ccEEEEEEECCCcchhhc-----------------c
Confidence 344 8999999998 77777776777664 32222221 1121 267888999999987665 2
Q ss_pred CCCceEEEEcCCCCeeE--EeeccccCcceEEEcc
Q 030675 129 EPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE 161 (173)
Q Consensus 129 ~~~~~v~~~d~~~~~~~--~~~~~~~~p~gi~~~~ 161 (173)
..+|.|..+||++|+.. .+...-...++++|-|
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP 210 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence 35689999999987532 2233346667788754
No 176
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.58 E-value=0.33 Score=40.66 Aligned_cols=100 Identities=8% Similarity=0.023 Sum_probs=52.3
Q ss_pred cCCcceEEEcCCCC--EEEE-------cCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-c
Q 030675 9 VNHPEDVSVDGNGV--LYTA-------TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E 78 (173)
Q Consensus 9 ~~~p~~l~~~~~g~--l~~~-------~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~ 78 (173)
...+..+++.|+|. .|+. +....|+..+..+....+.. +..-. ...|+++|+.+|+...+..+.++. .
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEecc
Confidence 34567888999884 3443 12346777765554443322 22233 566999976556654343344443 2
Q ss_pred CC-cEEEEeccCCc-c----ccCCccEEEcCCCc-EEEE
Q 030675 79 EG-VTVLVSQFNGS-Q----LRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 79 ~g-~~~~~~~~~~~-~----~~~~~~l~~~~dG~-~~v~ 110 (173)
++ -+......++. . ...+..+.++|||. +.+.
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence 22 11111111110 0 13588899999995 5443
No 177
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.57 E-value=0.21 Score=38.59 Aligned_cols=116 Identities=15% Similarity=0.129 Sum_probs=69.5
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cC-CcEEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EE-GVTVL 84 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~-g~~~~ 84 (173)
...++.|..+|.+.++. ..|.|+.+.. +|... ++..+..... =+.++|.+++ +.+...++.+.++ +. +...+
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~i-llAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAHI-LLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEecccccE-EEeecCCCcEEEEECCCcceeeE
Confidence 34567788888888665 7888887764 34332 2222343333 4677898888 5555555554444 34 33333
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD 149 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 149 (173)
. .|.. ...+.-.+.|||+-.++- ..+|+|..+++.++++.....
T Consensus 186 ~---~Gh~-~~ct~G~f~pdGKr~~tg-----------------y~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 186 M---SGHN-SPCTCGEFIPDGKRILTG-----------------YDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred e---cCCC-CCcccccccCCCceEEEE-----------------ecCceEEEEecCCCceeEEec
Confidence 3 2221 234556778899755542 135899999999987655544
No 178
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.54 E-value=0.04 Score=44.21 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=62.9
Q ss_pred eEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEEe--ccccCccccceEEccCCcEEEEEeCCC-eEEEEccCC---cEEEE
Q 030675 14 DVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG---VTVLV 85 (173)
Q Consensus 14 ~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g---~~~~~ 85 (173)
-|.+++. ..|..+. .+|.+..||..|+.-.+ ......|..||+|+|-...|+++-..+ .|+.+|... ...+.
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence 3455563 3444333 67888888888864433 233344544999998766657776554 455555322 22222
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST 141 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 141 (173)
...| ...+++.++|.++++ +...|+|+-||...
T Consensus 249 ---y~~P---lstvaf~~~G~~L~a-----------------G~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 249 ---YSHP---LSTVAFSECGTYLCA-----------------GNSKGELIAYDMRS 281 (673)
T ss_pred ---ecCC---cceeeecCCceEEEe-----------------ecCCceEEEEeccc
Confidence 1122 356999999976655 22458999999874
No 179
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.066 Score=41.37 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=46.1
Q ss_pred cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCCCEEEEEec
Q 030675 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
+-...|...+||..+++..- .+..+..+|++++....+. .++....-+.|||||..++.+..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 34577888999998887532 3458888999988755554 45556667899999999988754
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.46 E-value=0.1 Score=43.55 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=44.8
Q ss_pred cCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 9 VNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
......+++.|||.=.+-..+.+++.+|+ +|.. ......-.-.+ .++++.||+. +.+...+..+.++
T Consensus 12 ~hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkr-FASG~aDK~VI~W 80 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKR-FASGSADKSVIIW 80 (1081)
T ss_pred ccchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCce-eccCCCceeEEEe
Confidence 45677899999995443345578999996 5654 33333444567 9999999998 7766554433333
No 181
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.43 E-value=0.15 Score=44.57 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=91.5
Q ss_pred cCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE--EEeccccCccccceEEccCCcEEEEEeCCC--eEEEEcc
Q 030675 5 GEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW--EDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSE 78 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~--~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~ 78 (173)
..| +-.|+++++|- .+.+|++| ....+...+.+|.. ..+......|. .+++++-..++|+++.+. .+.+...
T Consensus 476 ~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~~ 553 (877)
T KOG1215|consen 476 GDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERASL 553 (877)
T ss_pred ccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhcC
Confidence 344 78899999998 67999999 55566666666643 22223336788 999999766769998774 3555556
Q ss_pred CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-EeeccccCc
Q 030675 79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFA 154 (173)
Q Consensus 79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~p 154 (173)
+| .+.+...- ...|+++++|- +..+|++|.... ..+..++.++..-+ ........|
T Consensus 554 dg~~~~~l~~~~----~~~p~glt~d~~~~~~yw~d~~~~----------------~~i~~~~~~g~~r~~~~~~~~~~p 613 (877)
T KOG1215|consen 554 DGSERAVLVTNG----ILWPNGLTIDYETDRLYWADAKLD----------------YTIESANMDGQNRRVVDSEDLPHP 613 (877)
T ss_pred CCCCceEEEeCC----ccCCCcceEEeecceeEEEcccCC----------------cceeeeecCCCceEEeccccCCCc
Confidence 77 44443221 36899999997 567999986522 24555555432222 222346677
Q ss_pred ceEEEccCCCEEEEEec
Q 030675 155 NGVALSEDERFLVVCES 171 (173)
Q Consensus 155 ~gi~~~~dg~~lyv~~~ 171 (173)
.+++.-.+ ++|+++-
T Consensus 614 ~~~~~~~~--~iyw~d~ 628 (877)
T KOG1215|consen 614 FGLSVFED--YIYWTDW 628 (877)
T ss_pred eEEEEecc--eeEEeec
Confidence 77776544 4776653
No 182
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.13 Score=39.28 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=43.8
Q ss_pred CCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCe--EEEE--ccCC-cEEEEeccCCcc-ccCCccEE
Q 030675 28 GDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQG--LLKV--SEEG-VTVLVSQFNGSQ-LRFANDVI 100 (173)
Q Consensus 28 ~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~--i~~~--~~~g-~~~~~~~~~~~~-~~~~~~l~ 100 (173)
.+..|.-|+..|+... +......-+ ..+++|+||++.+|..... ++.+ ..+| ++.+...+.-+. ......++
T Consensus 207 ~dt~i~lw~lkGq~L~~idtnq~~n~-~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 207 LDTKICLWDLKGQLLQSIDTNQSSNY-DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred CCCcEEEEecCCceeeeecccccccc-ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 5567788887787554 333333445 6788999999656554332 3322 2577 554443322110 12345556
Q ss_pred EcCCCcEEEE
Q 030675 101 EASDGSLYFT 110 (173)
Q Consensus 101 ~~~dG~~~v~ 110 (173)
++++.+-.+|
T Consensus 286 Fsn~S~r~vt 295 (420)
T KOG2096|consen 286 FSNSSTRAVT 295 (420)
T ss_pred eCCCcceeEE
Confidence 6665543333
No 183
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.42 E-value=0.12 Score=43.05 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 6 ~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
.|-....+||++-+++.+.-++.+|.|.+|+.+|.. .+...+..... .+....++.+ +++..+++.++++..+
T Consensus 176 ~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~-Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGL-IVSTGEDRTLRIWKKD 249 (745)
T ss_pred ccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCe-EEEecCCceEEEeecC
Confidence 344566789999999888888899999999987764 45555556667 7775556667 7777777888888655
No 184
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.011 Score=44.86 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=80.8
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEec-----cc---cCccccceEEccCCcEEEEEeCCCeEEEEc--
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWH-----QV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-- 77 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~~-----~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-- 77 (173)
..+|+-.|+|+|...++. -+|.|..|+ .+|++.+-. +. +..+.++|.|++|..+ +.+...+|-+.++
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-lAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-LASGSQDGKIKVWRI 292 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-hhccCcCCcEEEEEE
Confidence 679999999999777666 789999998 567654311 11 1223338888888877 5554444544444
Q ss_pred cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCc
Q 030675 78 EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFA 154 (173)
Q Consensus 78 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p 154 (173)
.+| .+.+..-. . .....+.++.|+.-..+.. -+..+-..-.++|+. ..+.......
T Consensus 293 ~tG~ClRrFdrAH-t---kGvt~l~FSrD~SqiLS~s-----------------fD~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 293 ETGQCLRRFDRAH-T---KGVTCLSFSRDNSQILSAS-----------------FDQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred ecchHHHHhhhhh-c---cCeeEEEEccCcchhhccc-----------------ccceEEEeccccchhHHHhcCccccc
Confidence 345 44443211 1 2456788888876444321 112233333334432 2333345677
Q ss_pred ceEEEccCCCEEEEEe
Q 030675 155 NGVALSEDERFLVVCE 170 (173)
Q Consensus 155 ~gi~~~~dg~~lyv~~ 170 (173)
|...|++||..+.-+.
T Consensus 352 n~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 352 NEATFTDDGHHIISAS 367 (508)
T ss_pred cceEEcCCCCeEEEec
Confidence 8888888888765543
No 185
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.36 E-value=0.28 Score=38.35 Aligned_cols=135 Identities=11% Similarity=0.109 Sum_probs=75.3
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEE--EeccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CCcEEEEe
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EGVTVLVS 86 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g~~~~~~ 86 (173)
.-++.|.|+|.-.++. .+..+..||++.+.. .....-.+.. .++++|||+. +++...++ |...++ .|.. +.+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl-cvawsPDgk~-iASG~~dg~I~lwdpktg~~-~g~ 194 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL-CVAWSPDGKK-IASGSKDGSIRLWDPKTGQQ-IGR 194 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE-EEEECCCcch-hhccccCCeEEEecCCCCCc-ccc
Confidence 3467888988766665 666777788765432 2223345677 9999999998 65544444 555554 4421 112
Q ss_pred ccCCccccCCccEEEcC-----CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEEc
Q 030675 87 QFNGSQLRFANDVIEAS-----DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALS 160 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~-----dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~~ 160 (173)
.+.+.. .+..+|++.| ..+.+++ .+.+|.+..+|...+.......+... ..-+.|.
T Consensus 195 ~l~gH~-K~It~Lawep~hl~p~~r~las-----------------~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 195 ALRGHK-KWITALAWEPLHLVPPCRRLAS-----------------SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred cccCcc-cceeEEeecccccCCCccceec-----------------ccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence 222211 2445555554 3343333 23457788888775655544544333 3456665
Q ss_pred cCCCEEEE
Q 030675 161 EDERFLVV 168 (173)
Q Consensus 161 ~dg~~lyv 168 (173)
.+| .+|-
T Consensus 257 G~g-liyS 263 (480)
T KOG0271|consen 257 GEG-LIYS 263 (480)
T ss_pred CCc-eEEe
Confidence 554 4443
No 186
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.31 E-value=0.3 Score=39.01 Aligned_cols=125 Identities=20% Similarity=0.179 Sum_probs=56.4
Q ss_pred CeEEEEcCC-CcEEEeccc---cCccccceEEc--cCCcEEEEE-eCCCeEEEEcc--CC---cEEEEeccC----Cc--
Q 030675 30 GWIKRMHPN-GTWEDWHQV---GSQSLLGLTTT--KENNVIIVC-DSQQGLLKVSE--EG---VTVLVSQFN----GS-- 91 (173)
Q Consensus 30 ~~i~~~~~~-g~~~~~~~~---~~~p~~gl~~~--~~g~l~~v~-~~~~~i~~~~~--~g---~~~~~~~~~----~~-- 91 (173)
.+++.||.. .+.....+. +..|. -+.|. |+...-|+. .-.+.|+++.. +| .+.+.+... +.
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pL-EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPL-EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEE-EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceE-EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 457788843 444433332 24566 66665 333443443 33456777663 45 444444321 11
Q ss_pred -cc--------cCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeec----c------
Q 030675 92 -QL--------RFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLD----G------ 150 (173)
Q Consensus 92 -~~--------~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~----~------ 150 (173)
.+ .-+.+|.++-|.+ |||++.. .|.|..||-.. ..++++.+ +
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~ 363 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGD 363 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence 11 3578999999876 8998643 35666666431 22322221 1
Q ss_pred ---------ccCcceEEEccCCCEEEEEecC
Q 030675 151 ---------LYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 151 ---------~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
...|+=|.+|-||++||||+|.
T Consensus 364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp -TTS------S----EEE-TTSSEEEEE---
T ss_pred CccccccccCCCCCeEEEccCCeEEEEEeec
Confidence 1346679999999999999873
No 187
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.30 E-value=0.031 Score=43.10 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=79.8
Q ss_pred cCCcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEE
Q 030675 9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVL 84 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~ 84 (173)
.+...++-+.| ...+..+. .++.|..+|. .+...........++ +|+|+|++-.+.+++....++..|.-. .+.+
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccc
Confidence 34456677777 44566555 7888988884 444333223345788 999999776634555556787777433 2222
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSED 162 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~d 162 (173)
....+. .+..-++.++|.|.-+++-+ -+.+|-.|....+..+.+- ...+...++.||.|
T Consensus 266 -~v~~dh-vsAV~dVdfsptG~Efvsgs-----------------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 266 -NVHKDH-VSAVMDVDFSPTGQEFVSGS-----------------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred -hhhccc-ceeEEEeccCCCcchhcccc-----------------ccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence 111111 13457788999998777632 2244444444333332221 12455667888888
Q ss_pred CCEEE
Q 030675 163 ERFLV 167 (173)
Q Consensus 163 g~~ly 167 (173)
.++++
T Consensus 327 skyi~ 331 (433)
T KOG0268|consen 327 SKYII 331 (433)
T ss_pred ccEEE
Confidence 87654
No 188
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.27 E-value=0.029 Score=28.97 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030675 131 HGVLLKYDPSTNQTSLVLDGLYFANGVALS 160 (173)
Q Consensus 131 ~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~ 160 (173)
+++|..+|+.+++..........|.+|+|+
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 368999999877665555556889999875
No 189
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.24 E-value=0.11 Score=39.58 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=70.1
Q ss_pred CCCCEEEEc-CCCeEEEEcC-CCcEEEe------ccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEec
Q 030675 19 GNGVLYTAT-GDGWIKRMHP-NGTWEDW------HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQ 87 (173)
Q Consensus 19 ~~g~l~~~~-~~~~i~~~~~-~g~~~~~------~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~ 87 (173)
|+..||.+. .+.-|+-||. +|++... .++..... .++|++||.. ++|.....|..++ ..| ...+...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCe-EeecccceEEEeeccCCCCCCcchhh
Confidence 455666444 5667888884 6764321 23344677 9999999998 6665555555555 245 2222221
Q ss_pred -cCCc--cccCCccEEEcC-CCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEcc
Q 030675 88 -FNGS--QLRFANDVIEAS-DGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSE 161 (173)
Q Consensus 88 -~~~~--~~~~~~~l~~~~-dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~ 161 (173)
..++ +..-..-++++| +-.++. ....+. -.||+.+ .+.+-.+.. .-....-++|.+
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~----------------~giy~~~--~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQR----------------VGIYNDD--GRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccce----------------eeeEecC--CCCceeeecccCCCeeeEEecc
Confidence 1111 112345567777 333333 322211 1344433 344433333 245566788899
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
||..||+.
T Consensus 261 dGn~lfsG 268 (406)
T KOG2919|consen 261 DGNKLFSG 268 (406)
T ss_pred CcCeeccc
Confidence 99888763
No 190
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.24 E-value=0.28 Score=35.42 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCeEEEEc-CCCcEEEe-cccc----CccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCc
Q 030675 19 GNGVLYTATGDGWIKRMH-PNGTWEDW-HQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGS 91 (173)
Q Consensus 19 ~~g~l~~~~~~~~i~~~~-~~g~~~~~-~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~ 91 (173)
.++.+|+...++.|+.+| .+|+..-- .... .... .+....+++.+|++.....++.++. +|...........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS-SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB---SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccccceeeeEecccCCcceeeeecccccccccccc-ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 367888887777999999 67764321 1111 1111 1222223455488776778999994 7822222212211
Q ss_pred cccC--------CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCC
Q 030675 92 QLRF--------ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163 (173)
Q Consensus 92 ~~~~--------~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg 163 (173)
+... ...+.++ +|.+|++... +.++.+|..+++.. +......+.++ ...++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~~ 212 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVIS-DGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYSL-PSVDG 212 (238)
T ss_dssp -SS--EEEETTEEEEEECC-TTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECEC-EECCC
T ss_pred CCCcceeeecccccceEEE-CCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccCC-ceeeC
Confidence 1111 1222333 5588888543 45677788877743 32222222221 23456
Q ss_pred CEEEEEe
Q 030675 164 RFLVVCE 170 (173)
Q Consensus 164 ~~lyv~~ 170 (173)
..||+.+
T Consensus 213 ~~l~~~~ 219 (238)
T PF13360_consen 213 GTLYVTS 219 (238)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 6777765
No 191
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.23 E-value=0.14 Score=39.51 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=29.0
Q ss_pred cCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCCCEEEE
Q 030675 128 GEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVV 168 (173)
Q Consensus 128 ~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg~~lyv 168 (173)
.+.++.|-.+|..++.+-.-. .......+++|+|.|++|+-
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE
Confidence 345677777887777643333 33678889999999998764
No 192
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.14 E-value=0.37 Score=35.96 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=61.4
Q ss_pred cCCcceEEEcCCCCEEEEc-C--CCeEEEEcC-CCcEEEec--cccCccccceEEccCCcEEEEEeCCCe-EEEEccCCc
Q 030675 9 VNHPEDVSVDGNGVLYTAT-G--DGWIKRMHP-NGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEGV 81 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~--~~~i~~~~~-~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g~ 81 (173)
-....||.+..+|.||-+. . ...|.++++ +|+..... +..-... ||++-.| ++ |...+..+ .+..|.+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~d-~l-~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILGD-KL-YQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEETT-EE-EEEESSSSEEEEEETTTT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEECC-EE-EEEEecCCeEEEEccccc
Confidence 3566889998899999777 3 346888885 56654332 2234577 8988654 66 77666655 444555543
Q ss_pred EEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030675 82 TVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN 142 (173)
Q Consensus 82 ~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 142 (173)
+.+... +++ --=+|+.+ +..+|.+|++ .+|+.+||++-
T Consensus 121 ~~~~~~~y~~----EGWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f 159 (264)
T PF05096_consen 121 KKIGTFPYPG----EGWGLTSD-GKRLIMSDGS------------------SRLYFLDPETF 159 (264)
T ss_dssp EEEEEEE-SS----S--EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-
T ss_pred eEEEEEecCC----cceEEEcC-CCEEEEECCc------------------cceEEECCccc
Confidence 333221 111 12346633 2268888765 58888888754
No 193
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.12 E-value=0.14 Score=39.98 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
++.+|+.+.++.++++|. +|+.. .......... +++++ ++++ |+......++.++. +|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~-~~~v-~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGAD-GGLV-FVGTEKGEVIALDAEDG 125 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEc-CCEE-EEEcCCCEEEEEECCCC
Confidence 678999988899999994 67643 1111112223 44443 4455 88766667888885 67
No 194
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.07 E-value=0.13 Score=40.60 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=35.6
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEEEecccc-C-----------c-cccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVG-S-----------Q-SLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~-~-----------~-p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
++.+|+.+.++.++.+|. +|+. .|.... . . .. ++++ .++++ |+......++.+|. +|
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~v-~v~~~~g~l~ald~~tG 140 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKE-IWSVDLSEKDGWFSKNKSALLSG-GVTV-AGGKV-YIGSEKGQVYALNAEDG 140 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcE-eeEEcCCCccccccccccccccc-ccEE-ECCEE-EEEcCCCEEEEEECCCC
Confidence 779999988889999995 5653 221111 0 0 12 3444 34566 88765556888885 67
No 195
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.03 E-value=0.16 Score=39.77 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=42.8
Q ss_pred EcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 17 VDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 17 ~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
+..+|++|+...+|.|+.+++++....|.... .... +-.+..+|++ |+......++.++. +|
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i-~~g~~~g~~y~ld~~~G 131 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKI-YVGSWDGKLYALDASTG 131 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeE-EEecccceEEEEECCCC
Confidence 55689999988888999999866554443221 2334 4444558998 88876655888887 78
No 196
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.00 E-value=0.39 Score=36.78 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred ccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CCcEEEe-----ccc---cCccccceEEccCC-cEEEEEeCC-CeEEE
Q 030675 8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NGTWEDW-----HQV---GSQSLLGLTTTKEN-NVIIVCDSQ-QGLLK 75 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g~~~~~-----~~~---~~~p~~gl~~~~~g-~l~~v~~~~-~~i~~ 75 (173)
.+....+|+|.|+|.-.++..+..|..++. .|+.-.. ... .+... .++++|-. ++ +.+..+ +.+-.
T Consensus 157 e~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~-~a~gsY~q~~gi 234 (406)
T KOG2919|consen 157 EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKT-LAVGSYGQRVGI 234 (406)
T ss_pred hhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcc-eeeecccceeee
Confidence 356788999999996555555667888874 3432111 111 22345 77888754 35 544444 32222
Q ss_pred EccCC---cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 76 VSEEG---VTVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 76 ~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
...++ ...+. +. ......|.+.++|+ +|..
T Consensus 235 y~~~~~~pl~llg----gh-~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 235 YNDDGRRPLQLLG----GH-GGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred EecCCCCceeeec----cc-CCCeeeEEeccCcCeeccc
Confidence 23333 22222 11 14567788888886 4444
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.29 Score=38.16 Aligned_cols=130 Identities=10% Similarity=0.017 Sum_probs=72.2
Q ss_pred eEEEcCC--CCEEEEc-CCCeEEEEcCC-Cc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEec
Q 030675 14 DVSVDGN--GVLYTAT-GDGWIKRMHPN-GT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQ 87 (173)
Q Consensus 14 ~l~~~~~--g~l~~~~-~~~~i~~~~~~-g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~ 87 (173)
++.|-+. ..-|++. ..+.+..||+. ++ +..+ +....|...++..++|+++|+++....+..+|..+-..+...
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 3444443 3444444 55677778753 32 1222 223344337888899999898887766777775431111111
Q ss_pred cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030675 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d 162 (173)
+.+. -.++.+|..+|.+.+..+.+- +.-|-.+|.++.++..-..--..+|.|.+.++
T Consensus 286 ~kg~-tGsirsih~hp~~~~las~GL-----------------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 286 LKGI-TGSIRSIHCHPTHPVLASCGL-----------------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred cCCc-cCCcceEEEcCCCceEEeecc-----------------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 2221 247899999998887776421 23455567665332222222356677777554
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.88 E-value=0.61 Score=36.22 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred CCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEE-c-CCCCeeEEeecc--ccCcceEEEccCCCEEEEE
Q 030675 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-D-PSTNQTSLVLDG--LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 95 ~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d-~~~~~~~~~~~~--~~~p~gi~~~~dg~~lyv~ 169 (173)
..-.|+++++|++..|.. ..|+|.|+ . +++.++.....| ......|+|+||+++|-++
T Consensus 175 ~lAalafs~~G~llATAS-----------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATAS-----------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeEEEECCCCCEEEEec-----------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 456799999999988843 33666553 3 333345555555 3445689999999977664
No 199
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.83 E-value=0.033 Score=29.23 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCEEEEc-CCC-eEEEEcCCCcE--EEeccccCccccceEEcc
Q 030675 21 GVLYTAT-GDG-WIKRMHPNGTW--EDWHQVGSQSLLGLTTTK 59 (173)
Q Consensus 21 g~l~~~~-~~~-~i~~~~~~g~~--~~~~~~~~~p~~gl~~~~ 59 (173)
++||++| ... .|.+.+.+|.- ..+......|. ||++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~-giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPE-GIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEE-EEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcC-EEEECC
Confidence 5789999 556 78888888753 33445577899 999874
No 200
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.79 E-value=0.71 Score=36.39 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=58.4
Q ss_pred cCCcceEEEc--C-CCCEE--EEcCCCeEEEEc----CCCcE----EEeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030675 9 VNHPEDVSVD--G-NGVLY--TATGDGWIKRMH----PNGTW----EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK 75 (173)
Q Consensus 9 ~~~p~~l~~~--~-~g~l~--~~~~~~~i~~~~----~~g~~----~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~ 75 (173)
+..|.|+|.- + +|.+| +...+|.+..|. .+|.+ ++-......+. |+++|.....||+++...+|++
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEE
Confidence 4567888874 3 57777 444667765543 24432 22224456899 9999976555599999999999
Q ss_pred Ecc--CC--cEEEEeccCCccc-cCCccEEEc--CCC--cEEEEeC
Q 030675 76 VSE--EG--VTVLVSQFNGSQL-RFANDVIEA--SDG--SLYFTVS 112 (173)
Q Consensus 76 ~~~--~g--~~~~~~~~~~~~~-~~~~~l~~~--~dG--~~~v~~~ 112 (173)
++. ++ ...+.....+..+ .-..+|++- ++| .|++++.
T Consensus 234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 983 33 3344433333222 245677774 344 4666653
No 201
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.78 E-value=0.056 Score=43.50 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred ceEEEcCCCC-EEEEcCCCeEEEEcCCCcEEEecc--cc--CccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEec
Q 030675 13 EDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQ--VG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQ 87 (173)
Q Consensus 13 ~~l~~~~~g~-l~~~~~~~~i~~~~~~g~~~~~~~--~~--~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~ 87 (173)
+..-..|+|+ |.++.....+-.||...-..++.. .. ..-. .|++++|.++.|.|.....|..+|... +.+++.
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhn-q~~Vrq 546 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQ 546 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEccc-ceeeec
Confidence 3344556774 555555456667774322111111 12 2346 788889999977776665555555332 112222
Q ss_pred cCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030675 88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN 142 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 142 (173)
+.|.+ -....|.+.+||. ||.. ..+++|-.+|..++
T Consensus 547 fqGht-DGascIdis~dGtklWTG------------------GlDntvRcWDlreg 583 (705)
T KOG0639|consen 547 FQGHT-DGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREG 583 (705)
T ss_pred ccCCC-CCceeEEecCCCceeecC------------------CCccceeehhhhhh
Confidence 23322 2456789999996 5554 23467777777543
No 202
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.74 E-value=0.42 Score=37.65 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=59.2
Q ss_pred CeEEEEcC-CCcEEEeccccCccccceEEcc-CCcEEEEEeCC------CeEEEEccCC--cEEEEeccCCccccCCccE
Q 030675 30 GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ------QGLLKVSEEG--VTVLVSQFNGSQLRFANDV 99 (173)
Q Consensus 30 ~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l 99 (173)
.+|++++. +|+...+.....+.. .+.++| |..++.+|-.+ .+|+.++.+| ...+..... ..+.-.=
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlg-H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~---~e~~gHE 243 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLG-HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME---GESVGHE 243 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EE-EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T---TEEEEEE
T ss_pred ceEEEEECCCCceeEEEecCcccc-CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC---Ccccccc
Confidence 35677773 566666666666666 777886 34565778654 2688888877 444322211 1222223
Q ss_pred EEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 100 IEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 100 ~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
-+.+||. ||.-.. ..+...--|..+|+++++.+.+... +.-..+..++||+ |+|.|
T Consensus 244 fw~~DG~~i~y~~~-------------~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~-L~vGD 300 (386)
T PF14583_consen 244 FWVPDGSTIWYDSY-------------TPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGK-LFVGD 300 (386)
T ss_dssp EE-TTSS-EEEEEE-------------ETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSS-EEEEE
T ss_pred cccCCCCEEEEEee-------------cCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCC-EEEec
Confidence 4567775 444211 1122234688889988766554332 2223455567776 55554
No 203
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.70 E-value=0.67 Score=35.38 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=41.4
Q ss_pred cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-----Cc---EEE-ecc-----ccCccccceEEccCCcEEEEEe
Q 030675 5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-----GT---WED-WHQ-----VGSQSLLGLTTTKENNVIIVCD 68 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-----g~---~~~-~~~-----~~~~p~~gl~~~~~g~l~~v~~ 68 (173)
.+..|..|.||++.|.+.+||++ ..+....|+.+ |. ++. +.. ..+.|. |+.|+....+ .|+.
T Consensus 18 tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-GiVfN~~~~F-~vt~ 94 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-GQVFNGSDTF-VVSG 94 (336)
T ss_pred cCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-EEEEeCCCce-EEcC
Confidence 34458999999999999999999 55666666644 31 222 221 234689 9999866554 4444
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.65 E-value=0.6 Score=36.23 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc--cCC--cEEEEeccCCccccCCccEE
Q 030675 28 GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--EEG--VTVLVSQFNGSQLRFANDVI 100 (173)
Q Consensus 28 ~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~ 100 (173)
..|.|+.+|...- ...+..+.+... .|+|+++|.+ ..+... ..|+|+. ++| +..+.+.. .......|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~l-lATASeKGTVIRVf~v~~G~kl~eFRRG~---~~~~IySL~ 225 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTL-LATASEKGTVIRVFSVPEGQKLYEFRRGT---YPVSIYSLS 225 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCE-EEEeccCceEEEEEEcCCccEeeeeeCCc---eeeEEEEEE
Confidence 5678888885442 223444455667 9999999999 544444 4577777 577 55554432 224567799
Q ss_pred EcCCCcEEEEeCc
Q 030675 101 EASDGSLYFTVSS 113 (173)
Q Consensus 101 ~~~dG~~~v~~~~ 113 (173)
+++++.+..+...
T Consensus 226 Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 226 FSPDSQFLAASSN 238 (391)
T ss_pred ECCCCCeEEEecC
Confidence 9999986665443
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=0.47 Score=40.46 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=57.5
Q ss_pred cceEEEcCCCCEEE-EcCCCeEEEEcCCC--------cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030675 12 PEDVSVDGNGVLYT-ATGDGWIKRMHPNG--------TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG 80 (173)
Q Consensus 12 p~~l~~~~~g~l~~-~~~~~~i~~~~~~g--------~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g 80 (173)
..+.+++|+++..+ ++.+|+|+.|.--| ++..| .....+ +++|+.+|-.|| +....+++..+. .+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~-~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVN-SLSFSSDGAYLL-SGGREGVLVLWQLETG 283 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--cccccc-eeEEecCCceEe-ecccceEEEEEeecCC
Confidence 35678899887664 45889999886322 12223 233456 999999998845 433446777664 33
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
.+++...+. .-.-++.++||+.+|...
T Consensus 284 ~kqfLPRLg----s~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 284 KKQFLPRLG----SPILHIVVSPDSDLYSLV 310 (792)
T ss_pred CcccccccC----CeeEEEEEcCCCCeEEEE
Confidence 344433221 234668999999877653
No 206
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=0.66 Score=35.48 Aligned_cols=69 Identities=7% Similarity=0.065 Sum_probs=44.7
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG 80 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g 80 (173)
.+++.|.+-|.+.... .+|+|..||.+. +..++....-.|...++++++|+.|+.+.....+...| .+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 7788999989777544 899999998643 22222222223333899999999955554444455555 366
No 207
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=1.1 Score=36.56 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=81.1
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcCCC--cEEEeccccCccccceEEccC-CcEEEEEeCC--CeEEEEc-c-CCcE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQ--QGLLKVS-E-EGVT 82 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~--~~i~~~~-~-~g~~ 82 (173)
.--|+.|.+++..+++. .++.++.||... -...+.+..+... .++|+|- ..+ +++..+ .+.+++. . .| .
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-A~awcP~q~~l-LAsGGGs~D~~i~fwn~~~g-~ 379 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-ALAWCPWQSGL-LATGGGSADRCIKFWNTNTG-A 379 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-EeeeCCCccCc-eEEcCCCcccEEEEEEcCCC-c
Confidence 44578999999988777 778888998532 2344556667777 8999984 344 444433 3455554 3 34 1
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d 162 (173)
.+.....+ .....|+..+..+=+++..+ +. ...=+||+|..- ..+..+.......--++++||
T Consensus 380 ~i~~vdtg---sQVcsL~Wsk~~kEi~sthG--~s-----------~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 380 RIDSVDTG---SQVCSLIWSKKYKELLSTHG--YS-----------ENQITLWKYPSM-KLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EecccccC---CceeeEEEcCCCCEEEEecC--CC-----------CCcEEEEecccc-ceeeeecCCcceeEEEEECCC
Confidence 12222222 35677999998754444322 10 011266666532 122222233333456899999
Q ss_pred CCEEEEEe
Q 030675 163 ERFLVVCE 170 (173)
Q Consensus 163 g~~lyv~~ 170 (173)
|.++.++.
T Consensus 443 g~~i~t~a 450 (484)
T KOG0305|consen 443 GETIVTGA 450 (484)
T ss_pred CCEEEEec
Confidence 99887764
No 208
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.49 E-value=0.13 Score=40.36 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=73.1
Q ss_pred eEEEcCCC-CEEEEcCCCeEEEEcCCCc-EEEeccccC-ccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEEEec
Q 030675 14 DVSVDGNG-VLYTATGDGWIKRMHPNGT-WEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQ 87 (173)
Q Consensus 14 ~l~~~~~g-~l~~~~~~~~i~~~~~~g~-~~~~~~~~~-~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~~~~ 87 (173)
.|.|.|+| +|.++...|..--|+...= .+.+...-. ... ++.++.+|.. .++....+.+++..-. +..+..
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr-~m~ws~~g~w-miSgD~gG~iKyWqpnmnnVk~~~a- 177 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR-TMKWSHNGTW-MISGDKGGMIKYWQPNMNNVKIIQA- 177 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce-eEEEccCCCE-EEEcCCCceEEecccchhhhHHhhH-
Confidence 36677776 4666555565555543211 111112222 345 8899999988 6665555666666322 332211
Q ss_pred cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEE
Q 030675 88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFL 166 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~l 166 (173)
.......+++++|+...|+++. .+|+|..+|-.-.+.+.++.+ ..-+..+.|.|....+
T Consensus 178 ---hh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 178 ---HHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred ---hhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1113678899999777888753 346777777543333333333 4556678888765433
No 209
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.49 E-value=0.57 Score=38.19 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=57.6
Q ss_pred EEEcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeC-------------CCeEEEEc
Q 030675 15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDS-------------QQGLLKVS 77 (173)
Q Consensus 15 l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~-------------~~~i~~~~ 77 (173)
+...++|.+++... ..+..+|..|+........ ...+ .+...++|++|+.+.. ...|+.++
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 44567888776554 6788888888854432222 2367 8888899999776651 23688888
Q ss_pred cCC-cEEEEe---ccCCcc--------------------ccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCc
Q 030675 78 EEG-VTVLVS---QFNGSQ--------------------LRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG 132 (173)
Q Consensus 78 ~~g-~~~~~~---~~~~~~--------------------~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 132 (173)
.+| +....+ .++... -.+.|++..++ ++.|+++... ..
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence 888 332221 111000 12678999998 6778887532 13
Q ss_pred eEEEEcCCCCeeE
Q 030675 133 VLLKYDPSTNQTS 145 (173)
Q Consensus 133 ~v~~~d~~~~~~~ 145 (173)
.|+.+|..++++.
T Consensus 294 ~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 294 AVIKIDYRTGKIK 306 (477)
T ss_dssp EEEEEE-TTS-EE
T ss_pred EEEEEECCCCcEE
Confidence 6777776556554
No 210
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.47 E-value=0.9 Score=35.35 Aligned_cols=102 Identities=12% Similarity=0.007 Sum_probs=61.1
Q ss_pred cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
..|-+.=..+++++|...-|.+. .++.|-.||. +|.+..... .-.... |+++++-.-++|-|.....+-..|. ..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhh
Confidence 34445556789999975555555 7777778884 666543222 334567 9999887777444443334444442 33
Q ss_pred --cEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030675 81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
.+..... +.....+.++|.-.++++..
T Consensus 226 kvIR~YhGH-----lS~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 226 KVIRHYHGH-----LSGVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred hhHHHhccc-----cceeEEEeccccceeEEecC
Confidence 3333222 24567788888766777743
No 211
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=0.82 Score=39.69 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=49.6
Q ss_pred CccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030675 7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV 76 (173)
Q Consensus 7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~ 76 (173)
|-.+...++.++|...+.++. .++.|..||.+.+ +..+......-. -++.+|..++ |.+...+|++.+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNL-fAAgHDsGm~VF 318 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNL-FAAGHDSGMIVF 318 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcce-eeeecCCceEEE
Confidence 445678899999998888877 6778888987654 444544455566 7788899888 888776665543
No 212
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.42 E-value=0.92 Score=38.44 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=58.5
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEcc--CC-cEEEEe
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSE--EG-VTVLVS 86 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~--~g-~~~~~~ 86 (173)
.-+|.|..++.|.-+..+..+.-|++.. .....-.+..... +++|+| |.++ +++..-++-++++. +. +..+.+
T Consensus 372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT-cVaFnPvDDry-FiSGSLD~KvRiWsI~d~~Vv~W~D 449 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT-CVAFNPVDDRY-FISGSLDGKVRLWSISDKKVVDWND 449 (712)
T ss_pred heecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeE-EEEecccCCCc-EeecccccceEEeecCcCeeEeehh
Confidence 3457887788888777777666666543 2333334555677 999998 4566 77665566666663 33 333222
Q ss_pred ccCCccccCCccEEEcCCCc-EEEEe
Q 030675 87 QFNGSQLRFANDVIEASDGS-LYFTV 111 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~-~~v~~ 111 (173)
. . .....+++.|||. .+|+.
T Consensus 450 l-~----~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 450 L-R----DLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred h-h----hhheeEEeccCCceEEEEE
Confidence 2 1 3567899999997 55554
No 213
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.42 E-value=0.67 Score=34.10 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=68.3
Q ss_pred CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEeccCCccccCCccEEEc
Q 030675 28 GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEA 102 (173)
Q Consensus 28 ~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~ 102 (173)
.+..++.||. +|+. .+|....+..+ .++|+.+..+ +++..-..-++++ ... ++++. .++... -....+ +
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSV-v~SgsfD~s~r~wDCRS~s~ePiQ-ildea~-D~V~Si--~ 152 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSV-VASGSFDSSVRLWDCRSRSFEPIQ-ILDEAK-DGVSSI--D 152 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceee-EEEecCcceE-EEeccccceeEEEEcccCCCCccc-hhhhhc-CceeEE--E
Confidence 4556888884 6664 45666677888 9999988777 6655545445544 233 33332 111100 112222 2
Q ss_pred CCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEEEEe
Q 030675 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCE 170 (173)
Q Consensus 103 ~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~lyv~~ 170 (173)
-.+..+++ ++.+|++-+||..-|+. ...-+..| +.+.|++|++.+.++-
T Consensus 153 v~~heIva-----------------GS~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~~ 202 (307)
T KOG0316|consen 153 VAEHEIVA-----------------GSVDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLASS 202 (307)
T ss_pred ecccEEEe-----------------eccCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEee
Confidence 23343333 34568899999764432 33334444 7899999999887754
No 214
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.40 E-value=1.1 Score=35.76 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=57.7
Q ss_pred EEEcCCCCEEEEcCCCeEEEEcCCCc--EEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEccCC-cE---EEEec
Q 030675 15 VSVDGNGVLYTATGDGWIKRMHPNGT--WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VT---VLVSQ 87 (173)
Q Consensus 15 l~~~~~g~l~~~~~~~~i~~~~~~g~--~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~---~~~~~ 87 (173)
+...++|.+++....|.+++-..+|. |+..... ..... ++.+.++|.+ |++....++++-..+| .. .+...
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l-~l~g~~G~l~~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGL-WLLTRGGGLYVSKGTGLTEEDFDFEEA 321 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCE-EEEeCCceEEEecCCCCcccccceeec
Confidence 45567888887776677887655554 4544332 33456 8888999999 6665555666655566 22 33322
Q ss_pred cCCccccCCccEEEcCCCcEEEE
Q 030675 88 FNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
........+.++.+.+++.+|++
T Consensus 322 ~~~~~~~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKEAWAA 344 (398)
T ss_pred ccCCCCcceEEEEEcCCCcEEEE
Confidence 11111124677888888888887
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.38 E-value=0.42 Score=38.96 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=51.6
Q ss_pred CccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~ 125 (173)
+.++ .++|++||++ ..|-..++.+++.. +- +.-++..+. ...--++.+|||+++++-....+
T Consensus 291 g~in-~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvtGGEDDL--------- 355 (636)
T KOG2394|consen 291 GSIN-EFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVTGGEDDL--------- 355 (636)
T ss_pred cccc-ceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEecCCcce---------
Confidence 3567 9999999998 66655666665553 32 222222222 34566899999998777322110
Q ss_pred cccCCCceEEEEcCCCCeeEEeecc---ccCcceEEEcc
Q 030675 126 VSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSE 161 (173)
Q Consensus 126 ~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi~~~~ 161 (173)
-+||.+- +.++++.+ -.+.+.++|+|
T Consensus 356 ------VtVwSf~----erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 356 ------VTVWSFE----ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------EEEEEec----cceEEEeccccccceeeEeecc
Confidence 2455542 23344443 46677888875
No 216
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.30 E-value=1.5 Score=36.83 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=70.3
Q ss_pred cceEEEcCCC-CEEEEcCCCeEEEEc---CCCcEEEec--------cccCccccceEEccCCcEEEEEeCCCeEEE---E
Q 030675 12 PEDVSVDGNG-VLYTATGDGWIKRMH---PNGTWEDWH--------QVGSQSLLGLTTTKENNVIIVCDSQQGLLK---V 76 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~~~~~i~~~~---~~g~~~~~~--------~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~---~ 76 (173)
-....|+|+| .||+......+.++. .++++.... ...+... .+.+++||+.+.+...+ .++. +
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~g-~v~Va~Vv 476 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIGG-KVYLAVVE 476 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEECC-EEEEEEEE
Confidence 4567899985 688664322333322 223332111 1123466 89999999764443333 4444 2
Q ss_pred c-cCCcEEEEeccC-Cccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030675 77 S-EEGVTVLVSQFN-GSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF 153 (173)
Q Consensus 77 ~-~~g~~~~~~~~~-~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 153 (173)
. .+|...+..... ...+ ..+.++....++.|++.... .+..+++++.++.....+..+-..
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~ 540 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLS 540 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCcc
Confidence 2 345322211100 0001 13577888888888776321 234688888884443332221111
Q ss_pred cceEEEccCCCEEEEEec
Q 030675 154 ANGVALSEDERFLVVCES 171 (173)
Q Consensus 154 p~gi~~~~dg~~lyv~~~ 171 (173)
+.-.++......+|+++.
T Consensus 541 ~~v~~vaa~~~~iyv~~~ 558 (591)
T PRK13616 541 APVVAVAASPSTVYVTDA 558 (591)
T ss_pred CceEEEecCCceEEEEcC
Confidence 222333333346888765
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.28 E-value=0.11 Score=42.04 Aligned_cols=89 Identities=12% Similarity=0.134 Sum_probs=55.9
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEe
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVS 86 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~ 86 (173)
.+...++.|+|...++- .+|.+..++-+.+ +.- +..-.+... +++++|||++ +++..++.++.++.-- .+.++.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKy-IvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKY-IVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccE-EEecCCcceEEEEEeccceEEEe
Confidence 57778888888766544 6777666664443 111 112244566 9999999999 7766666677777422 333333
Q ss_pred ccCCccccCCccEEEcC
Q 030675 87 QFNGSQLRFANDVIEAS 103 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~ 103 (173)
. .|. ..+.+.+++||
T Consensus 370 G-qGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 370 G-QGH-KSWVSVVAFDP 384 (636)
T ss_pred c-ccc-ccceeeEeecc
Confidence 2 222 25788899986
No 218
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.28 E-value=0.1 Score=32.07 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=28.1
Q ss_pred CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC
Q 030675 30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ 71 (173)
Q Consensus 30 ~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~ 71 (173)
+.+..+++ +++.........|+ ||+++++++++||++...
T Consensus 36 ~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~ 75 (86)
T PF01731_consen 36 GNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLA 75 (86)
T ss_pred ceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccC
Confidence 34555553 23444445567899 999999999999998664
No 219
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.18 E-value=1.4 Score=35.95 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcE--EEecccc---C----ccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEecc
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTW--EDWHQVG---S----QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQF 88 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~--~~~~~~~---~----~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~ 88 (173)
++.+|+.+.++.++.+|. +|+. ..-.... . ... ++++..++++ |+......++.+|. +|........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V-~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKV-FFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeE-EEecCCCeEEEEECCCCCEeeeecC
Confidence 789999988899999995 5642 2211111 0 122 3344332566 88776667888885 6732222221
Q ss_pred CCc---cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 89 NGS---QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 89 ~~~---~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
... ....-....+. ++.+|++.....+ .....++.++.+|+++|+.
T Consensus 139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKL 187 (488)
T ss_pred CCCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCce
Confidence 111 00011223333 3667776422111 0011246888888887764
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=1.5 Score=35.89 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=69.9
Q ss_pred eEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCC--CeEEEEccCCcEEEEeccCCccccCCccEEEcCCCcE
Q 030675 31 WIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL 107 (173)
Q Consensus 31 ~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~ 107 (173)
.+|-++.+|....+... .+-.+ ..+|+++++=+-|+-.. ..+-.++.+|.-. .+..+| -=|.+.+.|.|++
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVh-dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df~eg----pRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVH-DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDFPEG----PRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCce-EEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeCCCC----CccceEECCCCCE
Confidence 46667666654444333 34456 89999999773444332 2455555666111 122222 1288999999986
Q ss_pred EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCEEEEEecC
Q 030675 108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~lyv~~~~ 172 (173)
.+-.+ || ...|.|-.+|..+.+ .+.. ......-..|+|||++++.+.+.
T Consensus 326 i~lAG---FG-----------NL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 326 ILLAG---FG-----------NLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEee---cC-----------CCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEecc
Confidence 55432 22 133778888876422 2222 12333458899999999988764
No 221
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.09 E-value=0.81 Score=34.23 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=57.3
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeec
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV 126 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~ 126 (173)
+|...+.++.+|+||+-|...+..-.+.. +| +..+ .| ..|.+|-.|-.. ....++
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty----~G------------HtGavW~~Did~------~s~~li 68 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY----DG------------HTGAVWCCDIDW------DSKHLI 68 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeee----cC------------CCceEEEEEecC------Ccceee
Confidence 44448899999999777765543332333 56 2332 22 134444443210 011233
Q ss_pred ccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEE
Q 030675 127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168 (173)
Q Consensus 127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv 168 (173)
.++.+.++-.+|-++|+....+........+.|+++|..+.+
T Consensus 69 TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~ 110 (327)
T KOG0643|consen 69 TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA 110 (327)
T ss_pred eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence 455667788889888887666655555678999998875444
No 222
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.07 E-value=0.93 Score=38.51 Aligned_cols=134 Identities=17% Similarity=0.173 Sum_probs=76.7
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccC--ccccceEEccCCcEEEEEeCCCeEEEEc-cC-C---cE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-G---VT 82 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~-g---~~ 82 (173)
..-++.++|||.+.+.. -+..+..+..|.- .-+....+ -|-..+-+++|+++ .++...+.-+.++ -+ | ..
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSkl-ivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKL-IVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCe-EEeccCCCceEEeccccchhhhh
Confidence 45578888999877544 5555444433321 11111111 23337888899999 6665565555555 22 3 33
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeeccccCcceEEEcc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDGLYFANGVALSE 161 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~p~gi~~~~ 161 (173)
.++. + -+.-.+.+-|+-.++|+++. ++.+-+||.+.= .+..+.....-...++.+|
T Consensus 588 ~fAH--d----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 588 FFAH--D----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred hhcc--c----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcC
Confidence 3321 1 24566888898888998654 467888886532 2333333345556788888
Q ss_pred CCCEEEEE
Q 030675 162 DERFLVVC 169 (173)
Q Consensus 162 dg~~lyv~ 169 (173)
+|++++-+
T Consensus 645 ~G~~vvs~ 652 (888)
T KOG0306|consen 645 NGSFVVSS 652 (888)
T ss_pred CCCeEEec
Confidence 88765443
No 223
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.06 E-value=0.28 Score=40.29 Aligned_cols=96 Identities=18% Similarity=0.279 Sum_probs=60.7
Q ss_pred eEEEcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEe-
Q 030675 14 DVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS- 86 (173)
Q Consensus 14 ~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~- 86 (173)
-++++.+|.+|+...+..+.+++....+....+.. .... .|.-++++++ |+.. ..++.+.++.+ +.....
T Consensus 380 ~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~-aived~dnsL-WIGT-s~Glvk~~pe~~~v~n~ln~ 456 (671)
T COG3292 380 TTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVS-AIVEDPDNSL-WIGT-SGGLVKRDPESGRVLNLLNP 456 (671)
T ss_pred hhhhccCCcEEEEecccchhhhccCCcccccccccCCccccee-eeeecCCCCE-EEec-cCCeEecCccccchhccccc
Confidence 34556688999988776788887544233222222 2334 6677899897 8764 45788888644 433332
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
...+.+.....-+.++++|.+|++..
T Consensus 457 ~~~~l~~s~~~~lg~~~~g~Lw~a~g 482 (671)
T COG3292 457 GSHGLDGSRVEQLGLGPDGRLWLAAG 482 (671)
T ss_pred ccCcCCcchhhhhccCCCCceEEEec
Confidence 22233334567789999999999854
No 224
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.01 E-value=0.27 Score=39.81 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCccCCcceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEE
Q 030675 6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTV 83 (173)
Q Consensus 6 ~~~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~ 83 (173)
+|-.++..+|.+.++| +||.+.-+..+.+||. +|+...-.+...... .|..+|++..+.|....+.+..+...+.+.
T Consensus 548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf-SLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe-ecccCCCccceeeecccCcEEEEecCCccc
Confidence 4556788999999988 7888888889999994 565333233344555 667788888755554444455555455211
Q ss_pred EEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
..-.... ...-.+.|.+-|..|++...
T Consensus 627 yqlhlhe---ScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 627 YQLHLHE---SCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred eeecccc---cEEEEEEecccCceeeecCc
Confidence 1111111 24556888999999998654
No 225
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.95 E-value=0.95 Score=39.75 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=89.2
Q ss_pred CCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEe--ccccCccccceEEccCCcEEEEEeCCCeEEE-EccCC-cE-
Q 030675 10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLK-VSEEG-VT- 82 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~-~~~~g-~~- 82 (173)
..+..+.++. ++.+|.++ ....|.+...++..... ....-.+. +++.|.-++-+|.++....... .+.+| .+
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~ 515 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK 515 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence 4455566665 56888888 66778777766643332 33344688 9999976555599988754433 34466 32
Q ss_pred EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEc
Q 030675 83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALS 160 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~ 160 (173)
.+... ....|..++++| .|.+|+++... . .++.|-.++... ...+..+...|+|++++
T Consensus 516 vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~---------------~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d 575 (877)
T KOG1215|consen 516 VLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ---------------P-PRIERASLDGSERAVLVTNGILWPNGLTID 575 (877)
T ss_pred EEEec----CCCCccceeeccccCeeEEecCCC---------------C-chhhhhcCCCCCceEEEeCCccCCCcceEE
Confidence 22221 114688899999 67899998652 1 145555555332 22333447889999998
Q ss_pred cCCCEEEEEec
Q 030675 161 EDERFLVVCES 171 (173)
Q Consensus 161 ~dg~~lyv~~~ 171 (173)
-..+.+|++|.
T Consensus 576 ~~~~~~yw~d~ 586 (877)
T KOG1215|consen 576 YETDRLYWADA 586 (877)
T ss_pred eecceeEEEcc
Confidence 77777888874
No 226
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.93 E-value=0.7 Score=36.16 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=51.6
Q ss_pred eEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccC--ccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEecc
Q 030675 14 DVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQF 88 (173)
Q Consensus 14 ~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~ 88 (173)
+..+..+|++|+++.++.++++|. +|...-...... .-. +-.+-.++.+ |+......++.++. +| ........
T Consensus 105 ~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v-~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 105 GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTV-YVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEE-EEecCCCeEEEEEccCCcEEEEEecC
Confidence 333444899999998889999997 675432112222 112 2233456666 77644456888886 47 33222221
Q ss_pred CCccccCCccEEEcCCCcEEEEeC
Q 030675 89 NGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 89 ~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
............ ..+|.+|++..
T Consensus 183 ~~~~~~~~~~~~-~~~~~vy~~~~ 205 (370)
T COG1520 183 APLSLSIYGSPA-IASGTVYVGSD 205 (370)
T ss_pred CccccccccCce-eecceEEEecC
Confidence 101111222222 45677888754
No 227
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.90 E-value=1.6 Score=35.07 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=73.9
Q ss_pred EEEcC-CCCEEEEcCCCeEEEE-cCCCcEEE--eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-c-EEEEecc
Q 030675 15 VSVDG-NGVLYTATGDGWIKRM-HPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQF 88 (173)
Q Consensus 15 l~~~~-~g~l~~~~~~~~i~~~-~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~-~~~~~~~ 88 (173)
+-|.| ++.++++..++++.+| |.++..+. +........ +.++.|..+.++++..+++.++++..- . ..+...-
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln 194 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN 194 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence 44566 5567776666666655 45555432 222334456 666776544448888888888777533 2 3333332
Q ss_pred CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeE-EeeccccCcceEEEccCCCEE
Q 030675 89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTS-LVLDGLYFANGVALSEDERFL 166 (173)
Q Consensus 89 ~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~-~~~~~~~~p~gi~~~~dg~~l 166 (173)
.+.| ...+.+-|.|.++++..+ +.+-.||.-+| +.. .+...-...+.+++..+++.|
T Consensus 195 hg~p---Ve~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 195 HGCP---VESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred CCCc---eeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 3433 455788888888888644 35556666533 221 111123344566776666666
Q ss_pred EE
Q 030675 167 VV 168 (173)
Q Consensus 167 yv 168 (173)
+-
T Consensus 254 lS 255 (487)
T KOG0310|consen 254 LS 255 (487)
T ss_pred ee
Confidence 54
No 228
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.81 E-value=1.5 Score=34.19 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=75.4
Q ss_pred eEEEcCCCC-EEEEc--CCC---eEEEEcC-CCcEEEeccc--cC---ccccceEEc--cCCcEEEEEeCC--CeEEEEc
Q 030675 14 DVSVDGNGV-LYTAT--GDG---WIKRMHP-NGTWEDWHQV--GS---QSLLGLTTT--KENNVIIVCDSQ--QGLLKVS 77 (173)
Q Consensus 14 ~l~~~~~g~-l~~~~--~~~---~i~~~~~-~g~~~~~~~~--~~---~p~~gl~~~--~~g~l~~v~~~~--~~i~~~~ 77 (173)
.+.|.+++. +++.- ... .+..++. .|.......+ .+ ... .+.+. .+..+++++... ..++.++
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~hly~~~ 266 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYRHLYLYD 266 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence 466777776 77544 222 2445554 4443322111 11 123 44443 344565666632 3588888
Q ss_pred cCC-cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCC-CCeeEEeeccccCc
Q 030675 78 EEG-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQTSLVLDGLYFA 154 (173)
Q Consensus 78 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~p 154 (173)
.++ ...... .|. ...-.-+.+|+++ .+|++.... ......||+++.+ +++++.+......-
T Consensus 267 ~~~~~~~~lT--~G~-~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~ 330 (353)
T PF00930_consen 267 LDGGKPRQLT--SGD-WEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDH 330 (353)
T ss_dssp TTSSEEEESS---SS-S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred ccccceeccc--cCc-eeecccceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence 766 322211 111 1122346778875 588875431 1233589999998 78877666543332
Q ss_pred ceEEEccCCCEEEEEec
Q 030675 155 NGVALSEDERFLVVCES 171 (173)
Q Consensus 155 ~gi~~~~dg~~lyv~~~ 171 (173)
..+.|||+++++..+-+
T Consensus 331 ~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 331 YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEE-TTSSEEEEEEE
T ss_pred eEEEECCCCCEEEEEEc
Confidence 58999999997766543
No 229
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.80 E-value=0.13 Score=26.41 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=26.8
Q ss_pred CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEc
Q 030675 21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTT 58 (173)
Q Consensus 21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~ 58 (173)
++||+++ ..+.|..+|. +++.......+..|. +++++
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence 4699988 6778999985 455555455577888 88874
No 230
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=0.72 Score=36.81 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cE----EE------
Q 030675 20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VT----VL------ 84 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~----~~------ 84 (173)
+.+||.+..+..+..||. .|.+..-......++ .+++||.++.+|+......|+..+- .| .. ..
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred cceEEEecCCceEEEEEeccceeeEEEecCCcce-eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 456777667777777775 455444334455677 9999998888677655554554432 22 11 00
Q ss_pred -EeccCCccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030675 85 -VSQFNGSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT 144 (173)
Q Consensus 85 -~~~~~~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 144 (173)
.....|... ....-+++.-||++.++ +..+|.+..+|..+.++
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlS-----------------Gd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLS-----------------GDEDGKVCVWDIYSKQC 311 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEe-----------------eCCCCCEEEEecchHHH
Confidence 000111110 13456888899998776 23457777888765543
No 231
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.72 E-value=1.2 Score=32.79 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=35.3
Q ss_pred EEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030675 23 LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 23 l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g 80 (173)
+..+..+|.+..+|. .|+... +-.+.|.+.+.|+++++-..+......+..+|. +|
T Consensus 158 IvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred EEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 334446677777763 454332 456667669999999998565555555555664 56
No 232
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=94.70 E-value=0.8 Score=36.01 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=58.8
Q ss_pred CccccceEEccCCcEEEEEeCCCeEEEEc-cCCcE--------------EEEe-ccCCccccCCccEEEcCCCcEEEEeC
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVT--------------VLVS-QFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~--------------~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
...+ ++.|+++|++ ..+....+.+.++ ..... .+.. ...+ -..-+.+++..+|+++.++-
T Consensus 66 ~aVN-~vRf~p~gel-LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~- 141 (434)
T KOG1009|consen 66 RAVN-VVRFSPDGEL-LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSG- 141 (434)
T ss_pred ceeE-EEEEcCCcCe-eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeee-
Confidence 3566 9999999999 5544444433333 22000 1111 1111 11246778888888766652
Q ss_pred cCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCEE
Q 030675 113 STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFL 166 (173)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~l 166 (173)
+-++.++.+|...|++..... .-..++|++|+|-++++
T Consensus 142 ----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv 180 (434)
T KOG1009|consen 142 ----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV 180 (434)
T ss_pred ----------------eccceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence 234677888887787655544 46788999999977643
No 233
>PRK13684 Ycf48-like protein; Provisional
Probab=94.64 E-value=1.6 Score=33.84 Aligned_cols=95 Identities=8% Similarity=0.120 Sum_probs=54.4
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEE-cCCC-cEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEE-cc-CCc--EEE
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRM-HPNG-TWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EGV--TVL 84 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~-~~~g-~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g~--~~~ 84 (173)
..++++++++.+++....|.+++- +..| .+...... ..... ++++.+++++ |+.... +.+++ .. +|. +.+
T Consensus 175 ~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~-~i~~~~~g~~-~~vg~~-G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ-SMGFQPDGNL-WMLARG-GQIRFNDPDDLESWSKP 251 (334)
T ss_pred EEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce-eeeEcCCCCE-EEEecC-CEEEEccCCCCCccccc
Confidence 456777777766666666777765 3333 35554322 23456 8889899998 665433 45555 33 442 222
Q ss_pred EeccCCccccCCccEEEcCCCcEEEE
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
... .........++++.+++.+|++
T Consensus 252 ~~~-~~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 252 IIP-EITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred cCC-ccccccceeeEEEcCCCCEEEE
Confidence 111 0101123567788888888887
No 234
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.52 E-value=0.59 Score=39.38 Aligned_cols=139 Identities=12% Similarity=0.211 Sum_probs=78.5
Q ss_pred cCCcceEEEcCCCCEEEEcCCCeE-EEEc-CCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc-cC-C-cE
Q 030675 9 VNHPEDVSVDGNGVLYTATGDGWI-KRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-G-VT 82 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~~~~~i-~~~~-~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~-g-~~ 82 (173)
.....+++++|++...++...+++ ..|+ +.|++.+ |......|...++|++.+.+ ..+....+.++++ -. + -.
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~L-lAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTL-LATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCce-EEeccccceEEEEEeeCCEEE
Confidence 355677899998765555533444 4455 4666543 33323344338999999955 5554445555554 33 3 22
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeeccccCcceEEEc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALS 160 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~p~gi~~~ 160 (173)
.-..... .-...+.++|+-+.|+- ..+..++.+..||..+..+ ..+....+...+++|+
T Consensus 141 h~fkG~g----GvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~ 201 (775)
T KOG0319|consen 141 HSFKGHG----GVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS 201 (775)
T ss_pred EEecCCC----ceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec
Confidence 2222222 23466778876542221 1123567888888764433 2233446777899999
Q ss_pred cCCCEEE
Q 030675 161 EDERFLV 167 (173)
Q Consensus 161 ~dg~~ly 167 (173)
+|+..++
T Consensus 202 ~d~~~~l 208 (775)
T KOG0319|consen 202 EDSLELL 208 (775)
T ss_pred cCCceEE
Confidence 9877554
No 235
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.39 E-value=0.3 Score=40.14 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=34.3
Q ss_pred ccccceEEccCCcEEEEEeCCC---------eEEEEc-cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQ---------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~---------~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
.|. +|+||+.|+| |++..+. ++..+. +++ ...+...+.+..-.-..+.+++|||+ +||.
T Consensus 501 ~PD-nl~fD~~GrL-Wi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 501 SPD-NLAFDPWGRL-WIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CCC-ceEECCCCCE-EEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 489 9999999999 7775432 233333 233 22222222221112346789999996 6665
No 236
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.23 E-value=1.7 Score=32.55 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=60.5
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEec---cccCccccceEEccCCcEEEEEeCCCeEEE--EccCC-c
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLK--VSEEG-V 81 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~---~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~--~~~~g-~ 81 (173)
...+.+|+.|.|++.++. -+..+..+.. ++...-+. .+..... +++++++|++|..|.....++. ++.++ +
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence 456789999999866555 4555555542 45443322 2234577 9999999999777766665444 44444 4
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
+..... ... -.-.-.+..+|.-.++++...
T Consensus 141 ec~aVL-~~H-tqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 141 ECIAVL-QEH-TQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred EEEeee-ccc-cccccEEEEcCCcceeEEecc
Confidence 433221 111 023456889997668887543
No 237
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.23 E-value=2.8 Score=35.78 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=56.3
Q ss_pred cCccccceEEccCCcEEEEEeCCCeEEEEcc-------CC-cEEEEeccCCccccC---CccEEEcCCCcEEEEeCcCCc
Q 030675 48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-------EG-VTVLVSQFNGSQLRF---ANDVIEASDGSLYFTVSSTKF 116 (173)
Q Consensus 48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-------~g-~~~~~~~~~~~~~~~---~~~l~~~~dG~~~v~~~~~~~ 116 (173)
.+... .|+..||++- +++...+..++++. .| ...+........+.- .-.+.++|||++.+..-
T Consensus 454 dgaIW-si~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---- 527 (888)
T KOG0306|consen 454 DGAIW-SISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---- 527 (888)
T ss_pred cccee-eeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe----
Confidence 34455 6777888888 66666654444431 23 222222222222222 34468899998766521
Q ss_pred CcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEE
Q 030675 117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLV 167 (173)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~ly 167 (173)
-++++-.|-.++-+.-+-..|..-| ..|.+|||.+.+.
T Consensus 528 -------------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv 566 (888)
T KOG0306|consen 528 -------------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV 566 (888)
T ss_pred -------------ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence 2244544444456665556665555 4788999988544
No 238
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.19 E-value=0.5 Score=39.48 Aligned_cols=136 Identities=21% Similarity=0.193 Sum_probs=74.1
Q ss_pred cceEEEcC--CCCEEEEcCCCeE--EEEcCCCcE------EE-eccccCccccceEEccC-CcEEEEEeCCCeEEEEcc-
Q 030675 12 PEDVSVDG--NGVLYTATGDGWI--KRMHPNGTW------ED-WHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVSE- 78 (173)
Q Consensus 12 p~~l~~~~--~g~l~~~~~~~~i--~~~~~~g~~------~~-~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~~- 78 (173)
...+.||| +.+|-|+..+|.| ||+...|-- .. +........ .|.|+|- -++|.++.+...|-.+|.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehh
Confidence 35678888 3467776656654 444333311 11 112223345 6667652 234344433333443442
Q ss_pred CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCc-
Q 030675 79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA- 154 (173)
Q Consensus 79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p- 154 (173)
++ ...+...- ...-+++.+|+|+...+- ..+|+|..|.|..++..+.... ....
T Consensus 709 ~~~~~~~l~gHt-----dqIf~~AWSpdGr~~AtV-----------------cKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 709 NAKLYSRLVGHT-----DQIFGIAWSPDGRRIATV-----------------CKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred hhhhhheeccCc-----CceeEEEECCCCcceeee-----------------ecCceEEEeCCCCCCCccccCCCCccCc
Confidence 44 23333221 245789999999877763 2458999999986654333321 2122
Q ss_pred -ceEEEccCCCEEEEEe
Q 030675 155 -NGVALSEDERFLVVCE 170 (173)
Q Consensus 155 -~gi~~~~dg~~lyv~~ 170 (173)
.-|.|--||+++.|+-
T Consensus 767 gARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVG 783 (1012)
T ss_pred ceeEEEEecCcEEEEec
Confidence 2488888999888764
No 239
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.05 E-value=1.8 Score=32.12 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=52.4
Q ss_pred ccccceEEccCCcEE-EEE--eCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030675 50 QSLLGLTTTKENNVI-IVC--DSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL 125 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~-~v~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~ 125 (173)
.+. ..+++++|+.+ ++. +....++....++ ...+. .+. ......++++|.+|+.+...
T Consensus 25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~---~l~~PS~d~~g~~W~v~~~~----------- 86 (253)
T PF10647_consen 25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGG---SLTRPSWDPDGWVWTVDDGS----------- 86 (253)
T ss_pred ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCC---ccccccccCCCCEEEEEcCC-----------
Confidence 456 78889998763 333 2234566555555 44433 222 33445789999999986431
Q ss_pred cccCCCceEEEEcCCCCeeE--Eee-cccc-CcceEEEccCCCEEEEE
Q 030675 126 VSGEPHGVLLKYDPSTNQTS--LVL-DGLY-FANGVALSEDERFLVVC 169 (173)
Q Consensus 126 ~~~~~~~~v~~~d~~~~~~~--~~~-~~~~-~p~gi~~~~dg~~lyv~ 169 (173)
...++.+.+.. ++.. .+. .... ....+.+||||..+.+.
T Consensus 87 ----~~~~~~~~~~~-g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 87 ----GGVRVVRDSAS-GTGEPVEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred ----CceEEEEecCC-CcceeEEecccccCCceEEEEECCCCcEEEEE
Confidence 11233332222 2221 121 1122 45788999998876553
No 240
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.00 E-value=1.9 Score=32.29 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=29.4
Q ss_pred eEEccCCcEEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcC-CCcEEEEeCc
Q 030675 55 LTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSS 113 (173)
Q Consensus 55 l~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~ 113 (173)
...|.++.++|.....+..+.+|..- --.......|..+. +-++++ +|.+|++..+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~---sP~i~~g~~sly~a~t~ 156 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV---SPVIAPGDGSLYAAITA 156 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec---cceecCCCceEEEEecc
Confidence 34567777745444444566677432 11222233333233 346677 7888888543
No 241
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=93.99 E-value=0.49 Score=36.92 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=64.5
Q ss_pred cCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCccccee
Q 030675 48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYL 123 (173)
Q Consensus 48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~ 123 (173)
...+. -....+.++++++++...+...++ .+. ...+....... ..|+.+.+..+- .+.+++..
T Consensus 62 ~~a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dka---------- 128 (390)
T KOG3914|consen 62 SLAPA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKA---------- 128 (390)
T ss_pred hcccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeec----------
Confidence 33566 677788999988888776644333 222 12222221111 467888877754 47777644
Q ss_pred eecccCCCceEEEEc---CCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 124 DLVSGEPHGVLLKYD---PSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 124 ~~~~~~~~~~v~~~d---~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
|-++.+| ...+..+..+..+..-..++++||.+++.-+|-
T Consensus 129 --------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR 171 (390)
T KOG3914|consen 129 --------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR 171 (390)
T ss_pred --------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC
Confidence 3444444 332666677777888889999999998877764
No 242
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=93.91 E-value=1.4 Score=34.86 Aligned_cols=136 Identities=11% Similarity=-0.030 Sum_probs=74.2
Q ss_pred cceEEEcC--CCCEEEEcCCCeEEEEcCCC--c-------EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEc-c
Q 030675 12 PEDVSVDG--NGVLYTATGDGWIKRMHPNG--T-------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-E 78 (173)
Q Consensus 12 p~~l~~~~--~g~l~~~~~~~~i~~~~~~g--~-------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~-~ 78 (173)
-.||+|.+ .|+|..++.++.|..||... . ...+.......+ .++|++...-+|.+...+ .++..| .
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcC
Confidence 45688887 56777776777888777322 1 112223344455 777776443335444443 444444 2
Q ss_pred CC---cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeecccc
Q 030675 79 EG---VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLY 152 (173)
Q Consensus 79 ~g---~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~ 152 (173)
.+ ......... .-.|.+++.|-+ .++.| ++.+++|..+|+.+... ..+...-.
T Consensus 259 ~~~~~~~~~~~ah~----~~vn~~~fnp~~~~ilAT-----------------~S~D~tV~LwDlRnL~~~lh~~e~H~d 317 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHS----AEVNCVAFNPFNEFILAT-----------------GSADKTVALWDLRNLNKPLHTFEGHED 317 (422)
T ss_pred CCCCCCcccccccC----CceeEEEeCCCCCceEEe-----------------ccCCCcEEEeechhcccCceeccCCCc
Confidence 22 111111111 235778999944 45555 23568999999875332 12222234
Q ss_pred CcceEEEccCCCEEEEE
Q 030675 153 FANGVALSEDERFLVVC 169 (173)
Q Consensus 153 ~p~gi~~~~dg~~lyv~ 169 (173)
....+.|||....+..+
T Consensus 318 ev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 318 EVFQVEWSPHNETVLAS 334 (422)
T ss_pred ceEEEEeCCCCCceeEe
Confidence 44568888877766554
No 243
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.87 E-value=1.6 Score=33.50 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=43.1
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEE-ecc-c-cCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWED-WHQ-V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~-~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
..++-..+.|.||++. .+|.|..|| ..++... +.. . +.... ...|..+|++ +.+...+.+++++.
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc-Sa~Ftkn~ky-iLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC-SAVFTKNGKY-ILSSGKDSTVKLWE 333 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee-eEEEccCCeE-EeecCCcceeeeee
Confidence 4457777899999888 788898887 3555332 211 1 23344 6778899998 55555556777774
No 244
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.74 E-value=0.51 Score=37.15 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=59.2
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-c-CC--cE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-EG--VT 82 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~-~g--~~ 82 (173)
+...++++.|+..-|++. .++.|..||. -.+- ..+...+..+. .+.++|.--+ +++.....++++. + .| +.
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgL-iasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGL-IASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccce-eEEccCCceeEeecCCCcchhh
Confidence 346789999966666544 7788888873 2222 22234455678 8999998666 5544444466655 3 45 33
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
.+... .+..-.+.+.++|+++.|-
T Consensus 259 tlh~H-----KntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 259 TLHGH-----KNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred hhhhc-----cceEEEEEEcCCCCeeEEc
Confidence 33221 1456778899999877773
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=93.69 E-value=2 Score=33.21 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=66.4
Q ss_pred EEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CCcEEEEeccCCcc
Q 030675 16 SVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EGVTVLVSQFNGSQ 92 (173)
Q Consensus 16 ~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g~~~~~~~~~~~~ 92 (173)
.++|+|+-..+..+-++...|... ++..+-....... -|.+..|.-. .+|..+ ...+.+.+ .-.+....+-.|+
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~-yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ckIdeg~- 91 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIV-YIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCKIDEGQ- 91 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhh-heeeecccee-eeeeeeccceEEEEEeecceeEEEeccCC-
Confidence 567888766655445666555322 2211111222233 4555555444 444433 22332222 1122223332232
Q ss_pred ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 93 LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 93 ~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
.....+..+|||+ +..+. . |. -+|-.++..|.+.-.+-..-....|++|+|||++.-+.+
T Consensus 92 -agls~~~WSPdgrhiL~ts-e--F~--------------lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 92 -AGLSSISWSPDGRHILLTS-E--FD--------------LRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred -CcceeeeECCCcceEeeee-c--ce--------------eEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 2456688999996 44442 1 11 255555554444433333334457999999999876654
No 246
>PRK13684 Ycf48-like protein; Provisional
Probab=93.69 E-value=2.6 Score=32.68 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=44.2
Q ss_pred eEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEecc---ccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEec
Q 030675 14 DVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQ 87 (173)
Q Consensus 14 ~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~---~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~~ 87 (173)
.+++.+ +..|+....+.|++-.-.| .++.+.. ..+.+. .+....++.. +++.....+++-.+.| -+.+...
T Consensus 94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~-~~~g~~G~i~~S~DgG~tW~~~~~~ 170 (334)
T PRK13684 94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTA-EMATNVGAIYRTTDGGKNWEALVED 170 (334)
T ss_pred eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcc-eeeeccceEEEECCCCCCceeCcCC
Confidence 455543 3456555556677653222 4555421 123444 4444334444 5554443455544445 2332222
Q ss_pred cCCccccCCccEEEcCCCcEEEE
Q 030675 88 FNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 88 ~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
. ....+++.+.++|.++++
T Consensus 171 ~----~g~~~~i~~~~~g~~v~~ 189 (334)
T PRK13684 171 A----AGVVRNLRRSPDGKYVAV 189 (334)
T ss_pred C----cceEEEEEECCCCeEEEE
Confidence 2 235677888888765554
No 247
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=93.51 E-value=1.9 Score=31.57 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=46.7
Q ss_pred cceEEEcCCCCEEEEc-CCCeEEEEcCCC--cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
...+++||.|+|.++. .+...+-+|.-| .++.+.+...... .+.|+|.-.++..|.....|..-|..|
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir-~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR-CVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee-EEEeCCCceEEEEecccceEEEeeccc
Confidence 3568999999999888 566666666433 4677777777788 999999877745554444444334455
No 248
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=93.47 E-value=3 Score=34.35 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=54.4
Q ss_pred CCcceEEEcCCC-CEEEEcCCCeEEE-EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe
Q 030675 10 NHPEDVSVDGNG-VLYTATGDGWIKR-MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS 86 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~~~~~i~~-~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~ 86 (173)
....+++|+|+. .+.++..+..+.+ +.++-+..+|...-+-.. .+.+++..++ .++..++.-+.+++ -|.-.+-.
T Consensus 146 ~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL-~~~W~~~s~l-I~sgGED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVL-SLSWSTQSNI-IASGGEDFRFKIWDAQGANLFTS 223 (737)
T ss_pred ceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEE-EeecCccccc-eeecCCceeEEeecccCcccccC
Confidence 446788899854 5666654332222 334556667766555555 7777788788 77666665666553 45222211
Q ss_pred ccCCccccCCccEEEcCCCcEEEE
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
..... -...+++.|+ .+|..
T Consensus 224 ~~~ey---~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 224 AAEEY---AITSVAFNPE-KDYLL 243 (737)
T ss_pred Chhcc---ceeeeeeccc-cceee
Confidence 11121 2356899998 65554
No 249
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.39 E-value=2.4 Score=33.08 Aligned_cols=133 Identities=18% Similarity=0.189 Sum_probs=74.4
Q ss_pred CCccCCcceEEEcCCC-CEEEEcCCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030675 6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG 80 (173)
Q Consensus 6 ~~~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g 80 (173)
.|-...-++|++++.. .||-+..++.|-+||.. .++. .......... ++.+.|.-++ +++...+.+.++++ ..
T Consensus 190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldv-l~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDV-LVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEecccccee-EEecCCcceEEEeeeccc
Confidence 3445667899998755 45545577889999964 4432 2344555677 8888888777 44444445555553 22
Q ss_pred --cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcce
Q 030675 81 --VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANG 156 (173)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~g 156 (173)
+..+. |.. +-...+.+.| |+.+|-+.. +++|-.+|...|+....... -.....
T Consensus 268 ~~V~~l~----GH~-~~V~~V~~~~~dpqvit~S~------------------D~tvrlWDl~agkt~~tlt~hkksvra 324 (460)
T KOG0285|consen 268 ASVHVLS----GHT-NPVASVMCQPTDPQVITGSH------------------DSTVRLWDLRAGKTMITLTHHKKSVRA 324 (460)
T ss_pred ceEEEec----CCC-CcceeEEeecCCCceEEecC------------------CceEEEeeeccCceeEeeecccceeeE
Confidence 22221 111 2234455555 666666532 35677777766655443332 223345
Q ss_pred EEEccCC
Q 030675 157 VALSEDE 163 (173)
Q Consensus 157 i~~~~dg 163 (173)
+++.|+.
T Consensus 325 l~lhP~e 331 (460)
T KOG0285|consen 325 LCLHPKE 331 (460)
T ss_pred EecCCch
Confidence 5555553
No 250
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.31 E-value=3.8 Score=33.49 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.0
Q ss_pred EEEEcCCCeEEEEcC-CCc
Q 030675 23 LYTATGDGWIKRMHP-NGT 40 (173)
Q Consensus 23 l~~~~~~~~i~~~~~-~g~ 40 (173)
+|+...+|.++.+|. +|+
T Consensus 304 V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred EEEECCCceEEEEECCCCc
Confidence 666667788888885 554
No 251
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.23 E-value=2.6 Score=31.29 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=52.7
Q ss_pred CcceEEEcCCCCEE--EE--cCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEE-E-c-cCC-cE
Q 030675 11 HPEDVSVDGNGVLY--TA--TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK-V-S-EEG-VT 82 (173)
Q Consensus 11 ~p~~l~~~~~g~l~--~~--~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~-~-~-~~g-~~ 82 (173)
.+..+++.++|..+ +. +....++....++....+. ...... ...|+++|.+ |+........+ + + .++ ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~-W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWV-WTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCE-EEEEcCCCceEEEEecCCCcce
Confidence 57888999988644 44 2455677776666555443 222344 5669999988 66665543322 2 2 344 22
Q ss_pred EE-EeccCCccccCCccEEEcCCCc
Q 030675 83 VL-VSQFNGSQLRFANDVIEASDGS 106 (173)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~~~dG~ 106 (173)
.. ....... .....+.++|||.
T Consensus 102 ~~~v~~~~~~--~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 102 PVEVDWPGLR--GRITALRVSPDGT 124 (253)
T ss_pred eEEecccccC--CceEEEEECCCCc
Confidence 22 2211110 1567899999994
No 252
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=2.7 Score=34.30 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=62.3
Q ss_pred ccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC---cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccc
Q 030675 47 VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEY 121 (173)
Q Consensus 47 ~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~ 121 (173)
+..... |+.+++|++. ..+...+..+.++ ... ...+...- ...-.|+++| ...++++-.
T Consensus 300 H~qeVC-gLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~~H~-----aAVKA~awcP~q~~lLAsGG--------- 363 (484)
T KOG0305|consen 300 HRQEVC-GLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFTEHT-----AAVKALAWCPWQSGLLATGG--------- 363 (484)
T ss_pred ccceee-eeEECCCCCe-eccCCCccceEeccCCCccccEEEeccc-----eeeeEeeeCCCccCceEEcC---------
Confidence 344567 9999999987 5544334444444 322 22222211 2456788888 445666532
Q ss_pred eeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030675 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 122 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~ 169 (173)
++.++.|.-+|..++....-.........|.|++..+.+..+
T Consensus 364 ------Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 364 ------GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred ------CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence 245678888888777655545556667789999988777655
No 253
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=93.06 E-value=0.91 Score=38.54 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=59.9
Q ss_pred CcceEEEcCCCCEEEEcC---CCeEEEEc--CCCcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEEccCC-cE
Q 030675 11 HPEDVSVDGNGVLYTATG---DGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEEG-VT 82 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~~---~~~i~~~~--~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~~g-~~ 82 (173)
-..++||.++|+..++.. ...+..|+ ..|.+..+.+.-.... .++|+|.+++ +++-..+ .|+.+++.. ..
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt-cvaFsp~~ky-vvSVGsQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT-CVAFSPGNKY-VVSVGSQHDMIVNVNDWRVNS 157 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce-eeeecCCCcE-EEeeccccceEEEhhhhhhcc
Confidence 457899999998887762 23344444 4565556656655677 8999999998 6655443 344444221 11
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
..+ ..+.-.....++++.||..++|...
T Consensus 158 ~~a---snkiss~Vsav~fsEdgSYfvT~gn 185 (1080)
T KOG1408|consen 158 SGA---SNKISSVVSAVAFSEDGSYFVTSGN 185 (1080)
T ss_pred ccc---ccccceeEEEEEEccCCceeeeeee
Confidence 111 1111135677899999998888644
No 254
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=1.9 Score=31.29 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=47.7
Q ss_pred CEEEEcCCCeEEEEcCC-----CcEEEeccc--cCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEEEEec----
Q 030675 22 VLYTATGDGWIKRMHPN-----GTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQ---- 87 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~~~-----g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~---- 87 (173)
+|+.++....+...||. +++....+. -...+ -+.+ -||.+ |.--+. ..|+++++ +| +..+.+.
T Consensus 142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LN-ELE~-VdG~l-yANVw~t~~I~rI~p~sGrV~~widlS~L~ 218 (262)
T COG3823 142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLN-ELEW-VDGEL-YANVWQTTRIARIDPDSGRVVAWIDLSGLL 218 (262)
T ss_pred ceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccc-ceee-eccEE-EEeeeeecceEEEcCCCCcEEEEEEccCCc
Confidence 56666665666666643 222221111 11223 3333 46666 654443 47999997 56 4433322
Q ss_pred ----cCCccccCCccEEEcCCC-cEEEE
Q 030675 88 ----FNGSQLRFANDVIEASDG-SLYFT 110 (173)
Q Consensus 88 ----~~~~~~~~~~~l~~~~dG-~~~v~ 110 (173)
.+....+.+|+|+.+|++ ++|+|
T Consensus 219 ~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 219 KELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred hhcCccccccccccceeecCcCCeEEEe
Confidence 122234578999999976 79998
No 255
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=2.5 Score=36.93 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=48.1
Q ss_pred cCCcceEEEcCCCC-EEEEcCCCeEEEEc-CCCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 9 ~~~p~~l~~~~~g~-l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
-...-||+|+|..- +.++-..|.|.-|| .=|. +.++.+.-+... |++|++++-+ +|+...+..++++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qpl-FVSGGDDykIkVW 78 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPL-FVSGGDDYKIKVW 78 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCe-EEecCCccEEEEE
Confidence 46678999999875 44555888888887 2233 445666666677 9999999999 8887666555554
No 256
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=92.91 E-value=0.9 Score=37.24 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=52.8
Q ss_pred CEEEEcCCCeEEEEcCCCcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCc
Q 030675 22 VLYTATGDGWIKRMHPNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFAN 97 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~ 97 (173)
.+.++..+|++..++..|+++...+ ..+... .-.+++||.- .++..++|++.++. .| ...++... ....
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtg-Llt~GEDG~iKiWSrsGMLRStl~Q~~-----~~v~ 149 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAG-LLTAGEDGVIKIWSRSGMLRSTVVQNE-----ESIR 149 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCce-eeeecCCceEEEEeccchHHHHHhhcC-----ceeE
Confidence 3557778899999998888876543 344444 6678899987 66666778888884 77 33333221 2344
Q ss_pred cEEEcCCC-cEEEEe
Q 030675 98 DVIEASDG-SLYFTV 111 (173)
Q Consensus 98 ~l~~~~dG-~~~v~~ 111 (173)
.++.+|+. ++.++.
T Consensus 150 c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ 164 (737)
T ss_pred EEEECCCCCceEEec
Confidence 55666654 355543
No 257
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.90 E-value=3.4 Score=31.70 Aligned_cols=147 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCcceEEEcCCCCE-------------EEEcCCCeEEEEcC----CC---cEEEeccc-cCccccceEEcc--CCcEEEE
Q 030675 10 NHPEDVSVDGNGVL-------------YTATGDGWIKRMHP----NG---TWEDWHQV-GSQSLLGLTTTK--ENNVIIV 66 (173)
Q Consensus 10 ~~p~~l~~~~~g~l-------------~~~~~~~~i~~~~~----~g---~~~~~~~~-~~~p~~gl~~~~--~g~l~~v 66 (173)
..|.|+++...... .++..+|.|.-|.+ ++ ....+... .+...-|+++.. .++.||.
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 46888888753222 23334566666653 11 11222211 233333777763 3567799
Q ss_pred EeCCCeEEEEccCCcEEEE--eccCCc--c-ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030675 67 CDSQQGLLKVSEEGVTVLV--SQFNGS--Q-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST 141 (173)
Q Consensus 67 ~~~~~~i~~~~~~g~~~~~--~~~~~~--~-~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 141 (173)
++-.++.+.+.+.....+. ..+.+. | -..|-+|.-- .|++||+=..+.-. ..+.+.....|.|-.||+++
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~----~~d~v~G~G~G~VdvFd~~G 231 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD----RNDEVAGAGLGYVNVFTLNG 231 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc----ccccccCCCcceEEEEcCCC
Confidence 9877654433322222111 111111 1 1245555433 47899983221110 01233445668999999986
Q ss_pred CeeEEeecc--ccCcceEEEcc
Q 030675 142 NQTSLVLDG--LYFANGVALSE 161 (173)
Q Consensus 142 ~~~~~~~~~--~~~p~gi~~~~ 161 (173)
.-++.++.+ +..|=||+..|
T Consensus 232 ~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 232 QLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred cEEEEeccCCcccCCceeeeCh
Confidence 666667654 78898999865
No 258
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=3.3 Score=31.50 Aligned_cols=77 Identities=10% Similarity=0.070 Sum_probs=49.8
Q ss_pred cCCcceEEEcC-CCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEEE
Q 030675 9 VNHPEDVSVDG-NGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVLV 85 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~~ 85 (173)
-.+...+.++| .+.|.++.++|.+..++......+..-....|.+..+|.++-.. |+....+.+.++|.+ + ...+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~-~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTI-VTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceE-EEeccCceEEEEEecCCcceeec
Confidence 45567788988 56899999999998888544322211223445558888776555 777666678888853 4 44443
Q ss_pred e
Q 030675 86 S 86 (173)
Q Consensus 86 ~ 86 (173)
.
T Consensus 92 t 92 (323)
T KOG1036|consen 92 T 92 (323)
T ss_pred c
Confidence 3
No 259
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=2.8 Score=32.93 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=59.3
Q ss_pred ccccceEEccC--CcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeee
Q 030675 50 QSLLGLTTTKE--NNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDL 125 (173)
Q Consensus 50 ~p~~gl~~~~~--g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~ 125 (173)
++. ++.|-+. .+.+..|..++.+..+|. .+.+.+...-.. -+....+...|+|+ +|+++..
T Consensus 204 W~t-di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~------------ 268 (412)
T KOG3881|consen 204 WIT-DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTK------------ 268 (412)
T ss_pred eec-cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEeccc------------
Confidence 466 7777665 555244444455665664 344444332111 13456789999997 7887654
Q ss_pred cccCCCceEEEEcCCCCeeEEe-ecc-ccCcceEEEccCCCEEEE
Q 030675 126 VSGEPHGVLLKYDPSTNQTSLV-LDG-LYFANGVALSEDERFLVV 168 (173)
Q Consensus 126 ~~~~~~~~v~~~d~~~~~~~~~-~~~-~~~p~gi~~~~dg~~lyv 168 (173)
+.|..||..++.+... ..+ -..+.+|..+|.++.|..
T Consensus 269 ------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 269 ------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred ------chhheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence 6888899876665433 333 356678888888765543
No 260
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.26 E-value=4.9 Score=32.06 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=54.1
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEEcCCCc------EEEecc--ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRMHPNGT------WEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT 82 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~------~~~~~~--~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~ 82 (173)
..++.+.++|.+|+....|.+++-+.+|. +..... ...... ++.+.+++.+ |++... +++.... .|..
T Consensus 283 l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~-~v~~~~d~~~-~a~G~~-G~v~~s~D~G~t 359 (398)
T PLN00033 283 IQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGIL-DVGYRSKKEA-WAAGGS-GILLRSTDGGKS 359 (398)
T ss_pred eeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceE-EEEEcCCCcE-EEEECC-CcEEEeCCCCcc
Confidence 34677888899998887788877765553 222211 112345 7888888887 766544 5555554 4422
Q ss_pred -EEEeccCCccccCCccEEEcCCCcEEEE
Q 030675 83 -VLVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 83 -~~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
......... ......+.+.++++.|++
T Consensus 360 W~~~~~~~~~-~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 360 WKRDKGADNI-AANLYSVKFFDDKKGFVL 387 (398)
T ss_pred eeEccccCCC-CcceeEEEEcCCCceEEE
Confidence 111111111 123357787777788876
No 261
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=92.20 E-value=0.22 Score=25.46 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.8
Q ss_pred CCcceEEEcCCCCEEEEc
Q 030675 10 NHPEDVSVDGNGVLYTAT 27 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~ 27 (173)
..+.+|++|++|++|++.
T Consensus 13 ~~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eeEEEEEECCCCCEEEEE
Confidence 568999999999999876
No 262
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.16 E-value=3.6 Score=32.63 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=54.5
Q ss_pred ceEEccCCcEEEEEe--CCC---eEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeec
Q 030675 54 GLTTTKENNVIIVCD--SQQ---GLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLV 126 (173)
Q Consensus 54 gl~~~~~g~l~~v~~--~~~---~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~ 126 (173)
+..++++|+++.++. .++ .+..+|. +| +.+.+.+.. .....+.+.+||+ +|.+.........
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~------- 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS------- 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccc-------
Confidence 567889998755543 222 2555564 55 111112111 1223399999986 4455432110000
Q ss_pred ccCCCceEEEEcCCCCee--EEeeccccCcc---eEEEccCCCEEEEEe
Q 030675 127 SGEPHGVLLKYDPSTNQT--SLVLDGLYFAN---GVALSEDERFLVVCE 170 (173)
Q Consensus 127 ~~~~~~~v~~~d~~~~~~--~~~~~~~~~p~---gi~~~~dg~~lyv~~ 170 (173)
.......|+++...+... .++......+. ++..++|+++|+++-
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 000134788888876543 24444433333 788899999988854
No 263
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=91.99 E-value=4.4 Score=30.89 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=32.0
Q ss_pred ecccCCCceEEEEcCCCCee-EEeeccccCcceEEEccCCCEEEEEec
Q 030675 125 LVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 125 ~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
++.+..+|-|.+||+.+.+. ..+..-......++|+.||..|.++.+
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 33455778999999876543 233322234567999999999988765
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=91.99 E-value=1.7 Score=33.60 Aligned_cols=101 Identities=12% Similarity=-0.005 Sum_probs=56.7
Q ss_pred eecCCccCCcceEEEcCCC-CEEEEc-CCCeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEc--
Q 030675 3 KLGEGIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-- 77 (173)
Q Consensus 3 ~~~~~~~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-- 77 (173)
++.+|+ .+...+.|+|+| ++..+. -+-+|-.|+...+.....+. -.... |++|++||++.-++...+..-.+.
T Consensus 86 kIdeg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k-g~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 86 KIDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK-GYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred EeccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce-eEEECCCCceeeeeecccHHHHHHHH
Confidence 345563 667788999988 566544 56677777754432222122 22347 999999999865665443211111
Q ss_pred ---cCC-cEEEEeccCCccccCCccEEEcCCCcEEEE
Q 030675 78 ---EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 78 ---~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
..- ...+.. +. .-..+|..+|||+..+.
T Consensus 164 ~c~~W~ll~~f~~--dT---~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 164 SCKAWILLKEFKL--DT---IDLTGIEWSPDGNWLAV 195 (447)
T ss_pred hhHHHHHHHhcCC--Cc---ccccCceECCCCcEEEE
Confidence 000 112211 11 13467999999986555
No 265
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.97 E-value=4.9 Score=33.40 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=27.7
Q ss_pred eEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 133 ~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
.+-.||..+|+...........|.+|+=|++..+++++
T Consensus 295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred HhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 34457888888777777666678888888877776654
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.90 E-value=6.1 Score=32.87 Aligned_cols=128 Identities=19% Similarity=0.314 Sum_probs=75.4
Q ss_pred ceEEEcC-CCCEEEEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC--cEEEE
Q 030675 13 EDVSVDG-NGVLYTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG--VTVLV 85 (173)
Q Consensus 13 ~~l~~~~-~g~l~~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g--~~~~~ 85 (173)
..++.+. +-.||+......|||++. .|++.. +....+..+ .+.+++-..| +.|....+.+.+ |+ +. ...+-
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgL-la~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGL-LACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccce-EEecccCceEEEecchhhhhheeee
Confidence 3455554 557888777778999996 577543 333345556 8888887667 777665665554 43 32 33321
Q ss_pred --ecc----CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCc-ceE
Q 030675 86 --SQF----NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA-NGV 157 (173)
Q Consensus 86 --~~~----~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p-~gi 157 (173)
..+ ....+..+..+.+..|| |-++. ++..|.++.||..+.++-.+... ...| .-+
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~g-L~~aV----------------Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDG-LHVAV----------------GTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred cccccCCCccccccCcceEEEecCCc-eeEEe----------------eccCCcEEEEEcccCCceeecccCCccceeee
Confidence 111 12224467888888777 33332 23568999999987666555433 2233 345
Q ss_pred EE
Q 030675 158 AL 159 (173)
Q Consensus 158 ~~ 159 (173)
.|
T Consensus 278 ~~ 279 (703)
T KOG2321|consen 278 DW 279 (703)
T ss_pred cc
Confidence 55
No 267
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=91.82 E-value=3.3 Score=31.56 Aligned_cols=76 Identities=9% Similarity=0.126 Sum_probs=49.1
Q ss_pred CccccceEEccCCcEEEEEeCCC-eEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeec
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV 126 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~ 126 (173)
+..+ -+.|+|+|.. +++...+ .|+..+..| .+.+... .+. ....-++...+||+..++..
T Consensus 48 geI~-~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~~~l-kgH-sgAVM~l~~~~d~s~i~S~g-------------- 109 (338)
T KOG0265|consen 48 GEIY-TIKFHPDGSC-FASGGSDRAIVLWNVYGDCENFWVL-KGH-SGAVMELHGMRDGSHILSCG-------------- 109 (338)
T ss_pred ceEE-EEEECCCCCe-EeecCCcceEEEEeccccccceeee-ccc-cceeEeeeeccCCCEEEEec--------------
Confidence 4567 8899999998 6665554 455555455 3333221 111 13457788889999888753
Q ss_pred ccCCCceEEEEcCCCCeeE
Q 030675 127 SGEPHGVLLKYDPSTNQTS 145 (173)
Q Consensus 127 ~~~~~~~v~~~d~~~~~~~ 145 (173)
.+.++..+|.++|+..
T Consensus 110 ---tDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 110 ---TDKTVRGWDAETGKRI 125 (338)
T ss_pred ---CCceEEEEecccceee
Confidence 3468999999988653
No 268
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.72 E-value=4.9 Score=30.84 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=46.4
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEE-cCCC-cEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEc-cCCcEEEEec
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRM-HPNG-TWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ 87 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~-~~~g-~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~~~~~~ 87 (173)
..++...++|++++....|.++.- ++.. .+...... ..... .|.|++++.+ |+...+..+.+-+ .+..+.+...
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~l-w~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNL-WMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-E-EEEETTTEEEEEE-TTEEEEE---
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCE-EEEeCCcEEEEccCCCCccccccc
Confidence 344555567776655555666543 3322 25544332 34566 8999999999 6666665455444 2323333322
Q ss_pred cCCcc--ccCCccEEEcCCCcEEEEe
Q 030675 88 FNGSQ--LRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 88 ~~~~~--~~~~~~l~~~~dG~~~v~~ 111 (173)
..... -...-+++..+++.+|++-
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEE
T ss_pred cCCcccCceeeEEEEecCCCCEEEEe
Confidence 11111 1224667888888899974
No 269
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.61 E-value=2.3 Score=34.27 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=23.2
Q ss_pred CCcceEEEcCCC-CEEEEcCCCeEEEEc-CCCcEE
Q 030675 10 NHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWE 42 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~-~~g~~~ 42 (173)
.+|-.+-...+| +|.++...|.|-.+| .++++.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~ 164 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH 164 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceee
Confidence 467777777787 566777778888777 455543
No 270
>KOG4328 consensus WD40 protein [Function unknown]
Probab=91.53 E-value=3.5 Score=33.11 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=53.2
Q ss_pred CcceEEEcC-CC-CEE-EEcCCCeEEEEcCCC------cEEEeccccCccccceEEccCC-cEEEEEeCCCeEEEE-ccC
Q 030675 11 HPEDVSVDG-NG-VLY-TATGDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKV-SEE 79 (173)
Q Consensus 11 ~p~~l~~~~-~g-~l~-~~~~~~~i~~~~~~g------~~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~-~~~ 79 (173)
...+++|+| .. .+. +++..|.|..|+.++ ....+........ +|.|+|.. ..+|.+ .+.|.+++ |-.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs-~l~F~P~n~s~i~ss-SyDGtiR~~D~~ 265 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS-GLKFSPANTSQIYSS-SYDGTIRLQDFE 265 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcccc-ceEecCCChhheeee-ccCceeeeeeec
Confidence 356899999 33 555 555778899998642 2334444455556 99999743 332555 44455554 434
Q ss_pred C--cEEEEeccCCccccCCccEEEcC-CCcEEEEeC
Q 030675 80 G--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVS 112 (173)
Q Consensus 80 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~ 112 (173)
+ .+.+...-... ....++.+.. ++.+++.+.
T Consensus 266 ~~i~e~v~s~~~d~--~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 266 GNISEEVLSLDTDN--IWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred chhhHHHhhcCccc--eeeeeccccCCCccEEEeec
Confidence 3 44443321110 1334444444 345666653
No 271
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=91.52 E-value=0.34 Score=21.95 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.3
Q ss_pred cCCccEEEcCCCcEEEEe
Q 030675 94 RFANDVIEASDGSLYFTV 111 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~~ 111 (173)
+....|..|++|++|++.
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 466789999999999974
No 272
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.36 E-value=5.7 Score=30.94 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=76.0
Q ss_pred cCCcceEEEcC--CCCEEEEcCCCeEEEE--cCCCcEEEecccc----Ccc--ccceEEcc-CCcEEEEEeCCCeEEEEc
Q 030675 9 VNHPEDVSVDG--NGVLYTATGDGWIKRM--HPNGTWEDWHQVG----SQS--LLGLTTTK-ENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 9 ~~~p~~l~~~~--~g~l~~~~~~~~i~~~--~~~g~~~~~~~~~----~~p--~~gl~~~~-~g~l~~v~~~~~~i~~~~ 77 (173)
++-|-|..+-| +..++.-..+|++..+ |.+|+........ ..| . .-+++. ++++ |+......++.++
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~-~~~~~~~~~~~-~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE-HPAYSRDGGRL-YFVSYEGNVYSAD 211 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEE-EEEBTTSEEEEEE
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc-ccceECCCCeE-EEEecCCEEEEEe
Confidence 56677777777 3344433377887654 5677644221111 111 1 223333 4456 6655555677777
Q ss_pred cCC-cEEEEec---c------CCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030675 78 EEG-VTVLVSQ---F------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL 146 (173)
Q Consensus 78 ~~g-~~~~~~~---~------~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 146 (173)
-.| ...+... . ++.....-.-+++++ .+++|+-=.....+ .-+.+.-.||.+|+++++...
T Consensus 212 lsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g--------sHKdpgteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 212 LSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG--------SHKDPGTEVWVYDLKTHKRVA 283 (342)
T ss_dssp ETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT---------TTS-EEEEEEEETTTTEEEE
T ss_pred ccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC--------CccCCceEEEEEECCCCeEEE
Confidence 544 2222211 1 122223445688886 56788852110111 112345689999999886543
Q ss_pred eeccccCcceEEEccCCC-EEEEE
Q 030675 147 VLDGLYFANGVALSEDER-FLVVC 169 (173)
Q Consensus 147 ~~~~~~~p~gi~~~~dg~-~lyv~ 169 (173)
.........+|+++.|.+ .||..
T Consensus 284 Ri~l~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 284 RIPLEHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp EEEEEEEESEEEEESSSS-EEEEE
T ss_pred EEeCCCccceEEEccCCCcEEEEE
Confidence 333223345888887766 55544
No 273
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.13 E-value=2.8 Score=35.64 Aligned_cols=137 Identities=12% Similarity=0.137 Sum_probs=68.5
Q ss_pred ccCCcceEEEcCCCCEEEEc-CCCeEEEEc--CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC-c
Q 030675 8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG-V 81 (173)
Q Consensus 8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~--~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g-~ 81 (173)
.+..+-.|.|+|-|..+.+. .+..+-.|| ..|-...+........ -+.|.|+|++ .+.......+.++. .| +
T Consensus 111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~-~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~ 188 (825)
T KOG0267|consen 111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD-VLRLSPDGRW-VASGGEDNTVKIWDLTAGKL 188 (825)
T ss_pred cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE-EEeecCCCce-eeccCCcceeeeeccccccc
Confidence 34556677788866555222 222233343 3454444444344456 8899999986 44333345666553 34 2
Q ss_pred -EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---ccCcceE
Q 030675 82 -TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGV 157 (173)
Q Consensus 82 -~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi 157 (173)
..+- ...+ ..+.+.++|..-+..+ +..+..+--+|.++ .+++..+ ...+.+.
T Consensus 189 ~~ef~-~~e~----~v~sle~hp~e~Lla~-----------------Gs~d~tv~f~dlet--fe~I~s~~~~~~~v~~~ 244 (825)
T KOG0267|consen 189 SKEFK-SHEG----KVQSLEFHPLEVLLAP-----------------GSSDRTVRFWDLET--FEVISSGKPETDGVRSL 244 (825)
T ss_pred ccccc-cccc----cccccccCchhhhhcc-----------------CCCCceeeeeccce--eEEeeccCCccCCceee
Confidence 2221 1111 1223334443222211 12345666666653 2233322 3445678
Q ss_pred EEccCCCEEEEEe
Q 030675 158 ALSEDERFLVVCE 170 (173)
Q Consensus 158 ~~~~dg~~lyv~~ 170 (173)
+|+|+++.++..+
T Consensus 245 ~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 245 AFNPDGKIVLSGE 257 (825)
T ss_pred eecCCceeeecCc
Confidence 9999998776543
No 274
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=90.93 E-value=6.6 Score=30.93 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=41.7
Q ss_pred cceEEEcC--CCCEEEEcCCCeEEEEcC-CCcEEEe----ccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 12 PEDVSVDG--NGVLYTATGDGWIKRMHP-NGTWEDW----HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 12 p~~l~~~~--~g~l~~~~~~~~i~~~~~-~g~~~~~----~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
--+|.|+| .|.|..+|....|+.+.+ +|.|..- ........ +|+++|..+-++.+..-.+-++++
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIW 285 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIW 285 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEE
Confidence 34688888 677887776677877763 5776542 22334567 899998766646555555555554
No 275
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.85 E-value=8.3 Score=31.90 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=68.2
Q ss_pred CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccCcccc-------ceEEccCCcEEEEEeCCCeEEEEcc--CCcEEE--
Q 030675 20 NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGSQSLL-------GLTTTKENNVIIVCDSQQGLLKVSE--EGVTVL-- 84 (173)
Q Consensus 20 ~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~~p~~-------gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~-- 84 (173)
+.+|.+.+ ...+||++|. .|+++ .|.-.-..+.. +-.+++.+ . ++.-..++++++|+ .|...+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~-T-lvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQ-T-LVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccc-c-EEeecCCceEEecccccCcceeee
Confidence 44555444 4467889884 56644 34221111110 11222333 3 34445568999995 442122
Q ss_pred EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEEccCC
Q 030675 85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDE 163 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~~~dg 163 (173)
...-+-...+..+.++...+|.|.|+. ..|.|-.||--..+......++.. ..+|..+.||
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS------------------~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGS------------------LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG 483 (644)
T ss_pred eeccccccccccceeeecCCceEEEee------------------cCCcEEeehhhhhhhhhcccccCCceeeEEeeccC
Confidence 111111112445667888889888874 336677777532222223344433 4689999999
Q ss_pred CEEEEE
Q 030675 164 RFLVVC 169 (173)
Q Consensus 164 ~~lyv~ 169 (173)
+++..|
T Consensus 484 Kwil~T 489 (644)
T KOG2395|consen 484 KWILAT 489 (644)
T ss_pred cEEEEe
Confidence 987654
No 276
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.54 E-value=6.6 Score=30.22 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=56.3
Q ss_pred cceEEEcCCC---CEEEEcCCCeEEEEcCCCcEEEe---ccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cE
Q 030675 12 PEDVSVDGNG---VLYTATGDGWIKRMHPNGTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VT 82 (173)
Q Consensus 12 p~~l~~~~~g---~l~~~~~~~~i~~~~~~g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~ 82 (173)
..++.|++.- +|..+..+|.|..|+. |.|..+ ....+..+ +|+++|.|++ -++-.+++.++.+ ..| ..
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~-~~W~~~~slK~H~~~Vt-~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRV-GSWELLKSLKAHKGQVT-DLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEc-CCeEEeeeecccccccc-eeEecCCCce-EEEEcCCceeeeehhhcCccc
Confidence 3455666532 6666667788888863 444322 23445677 9999999999 6666666666655 366 33
Q ss_pred EEEeccCCccccCCccEEEcCCCcEEEE
Q 030675 83 VLVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
.+.+ +. +.+.-+.++|.|..|+.
T Consensus 163 ~v~~-L~----~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 163 FVLN-LK----NKATLVSWSPQGDHFVV 185 (362)
T ss_pred eeec-cC----CcceeeEEcCCCCEEEE
Confidence 2222 11 34566999999974443
No 277
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.50 E-value=3.2 Score=33.24 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=62.5
Q ss_pred CCcceEEEcCCCCEEEEcCCCeEEEEcCCCc-E-E--Ee----ccc---c---CccccceEEccCCcEEEEEeCCCeEEE
Q 030675 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGT-W-E--DW----HQV---G---SQSLLGLTTTKENNVIIVCDSQQGLLK 75 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~-~-~--~~----~~~---~---~~p~~gl~~~~~g~l~~v~~~~~~i~~ 75 (173)
..++++++-.+.++..+..+|.|.-|+.--+ . . .. .+. . .+.+ ++++.+..++ +.+...++.++
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL-~asGS~~G~vr 405 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDL-LASGSWSGCVR 405 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCce-EEecCCCCceE
Confidence 4688899887777777778898888873221 1 1 11 011 1 1566 8888888888 77777777777
Q ss_pred Ec--cCCcEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 76 VS--EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 76 ~~--~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
++ .+|++.+.-...-.-....|.|++.++|. ++++
T Consensus 406 LW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 77 35632221111111224789999999998 6665
No 278
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.47 E-value=2 Score=35.41 Aligned_cols=66 Identities=11% Similarity=-0.038 Sum_probs=49.8
Q ss_pred CcceEEEcCCC-CEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 11 HPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 11 ~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
.+.+.+++|+. .+.++-.+|.|.-+|.+.+........-.|. -++++|+|.++.|++....+..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 56677888855 5666668999999997766666555566799 999999999977776555566666
No 279
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.44 E-value=1.6 Score=37.77 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=46.7
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
=.++|.+.+|+|-|++.+|.|.-+|..|...+ ..+..+.|..||.+..||+. +++.-...++.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw-ilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW-ILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE-EEEeecceEEEEE
Confidence 45788888999999999999988887664332 23344666659999999998 5444444566665
No 280
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=90.38 E-value=6.5 Score=33.91 Aligned_cols=92 Identities=9% Similarity=0.161 Sum_probs=53.0
Q ss_pred cceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEec
Q 030675 12 PEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQ 87 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~ 87 (173)
..+++|.++| .||-+...+-+.+|.. +++ .++.+..+.|.+++.+++|+.+.-++...+.+..+.. +- .......
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 4567788877 4555545555556653 344 5555666666669999999998334444566666663 32 1111111
Q ss_pred c-------CCccccCCccEEEcCC
Q 030675 88 F-------NGSQLRFANDVIEASD 104 (173)
Q Consensus 88 ~-------~~~~~~~~~~l~~~~d 104 (173)
+ ...+...+.++.+||.
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred ccCCCccccccccccceeEEEcCC
Confidence 1 1112345678888884
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=5.7 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=23.2
Q ss_pred cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEc
Q 030675 5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH 36 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~ 36 (173)
.+|-.+....+.++|.=-++++. .+|.+..|+
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 44556777888888887777766 677777775
No 282
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=89.94 E-value=2.1 Score=34.82 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=44.0
Q ss_pred cceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 12 p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
..|+++.| +..|+++. .+.+|+.||...+...--.....|...++|.++|.+|.+......++.+|.-+
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 46899999 45677776 78899999854332221122334544889999998744443445677777444
No 283
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=89.55 E-value=7 Score=29.10 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=46.2
Q ss_pred ccCCcceEEEcC-CCCEEEEcCCCeEEEEcC-CCcEEEe-ccccCccccceEE-ccCCcEEEEEeCCCeEEEEcc
Q 030675 8 IVNHPEDVSVDG-NGVLYTATGDGWIKRMHP-NGTWEDW-HQVGSQSLLGLTT-TKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 8 ~~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~-~g~~~~~-~~~~~~p~~gl~~-~~~g~l~~v~~~~~~i~~~~~ 78 (173)
.++....+-.|| ++.++++..++.+|.+|. +|++... .......+ .++- +..+.+ + +..+++.+++++
T Consensus 113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qi-l-sG~EDGtvRvWd 184 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQI-L-SGAEDGTVRVWD 184 (325)
T ss_pred cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcce-e-ecCCCccEEEEe
Confidence 456677888998 678888889999999995 7877653 33344555 5554 456665 3 445567777764
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=89.48 E-value=8.6 Score=31.71 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=50.9
Q ss_pred ceEEEcCCCCEEEEc---CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEE-ccCCcEEEEe
Q 030675 13 EDVSVDGNGVLYTAT---GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKV-SEEGVTVLVS 86 (173)
Q Consensus 13 ~~l~~~~~g~l~~~~---~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~-~~~g~~~~~~ 86 (173)
.++.|.++|+=|..- +-.++-.++..+..+. +.+..|.|.+-|++.|+++.+|..++ |-+.+ |......+..
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcCCCCEeE--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 346666655433211 3344555555555432 33445666899999999988887663 33333 3222222211
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeC
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
.. .....-...+|||..++|..
T Consensus 352 ~~----a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 352 FK----AANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred cc----cCCceEEEEcCCCcEEEEEe
Confidence 10 12334578889998766643
No 285
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.34 E-value=12 Score=31.58 Aligned_cols=69 Identities=9% Similarity=0.158 Sum_probs=45.8
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
..--.+|..+.|.++++. ..+-|..||+ .+ ++.++..+..... .|.+++||+. .++...++.++++.-|
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~-~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTR-LLSASSDGTIRLWDLG 243 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCe-EeecCCCceEEeeecc
Confidence 344567777788888877 4455666775 33 3344445556677 8889999988 6666666777777544
No 286
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.23 E-value=5 Score=31.69 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=29.9
Q ss_pred ceEEccCCcEEEEEeCCCeEEEEcc--CCcEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 54 GLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
.++++.+|.. +.+...++.+|+.. +-...+.... .-...++|.++|||.+.++-
T Consensus 149 ~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~---~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 149 VVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIA---HHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred EEEEcCCCCE-eeeccccceEEEEecCcchhhhhhHh---hcCccccceeCCCCcEEEEe
Confidence 5677777666 44444456666553 2111111111 11367899999999766653
No 287
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.23 E-value=10 Score=30.54 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC---cEEEEecc-CC-cccc---CCccEEEcCCC
Q 030675 37 PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG---VTVLVSQF-NG-SQLR---FANDVIEASDG 105 (173)
Q Consensus 37 ~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g---~~~~~~~~-~~-~~~~---~~~~l~~~~dG 105 (173)
++-....+....+.+. +++|-.+. . |++...+|.+.++. .. ...++... .. .+.+ +.++++.-|.-
T Consensus 316 ~eesqlifrg~~~sid-cv~~In~~-H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s 392 (479)
T KOG0299|consen 316 PEESQLIFRGGEGSID-CVAFINDE-H-FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS 392 (479)
T ss_pred cccceeeeeCCCCCee-eEEEeccc-c-eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence 4444444445566777 88886553 4 55555555444442 11 11111111 00 1122 55666666655
Q ss_pred cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccCcceEEEccCCCEEEEE
Q 030675 106 SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVC 169 (173)
Q Consensus 106 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~p~gi~~~~dg~~lyv~ 169 (173)
.++.+-.. ...-+||.+...-..+..+.. -..+.|+|+|+++|+++++.
T Consensus 393 dL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 393 DLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 55554211 112366666553223333322 24667999999999988775
No 288
>PRK13614 lipoprotein LpqB; Provisional
Probab=89.12 E-value=12 Score=31.36 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=52.9
Q ss_pred cceEEEcCCCCEEEEcCC--CeEEEEcCCCc--E-------EEeccccC-ccccceEEccCC-cEEEEEeCC-C-eEEE-
Q 030675 12 PEDVSVDGNGVLYTATGD--GWIKRMHPNGT--W-------EDWHQVGS-QSLLGLTTTKEN-NVIIVCDSQ-Q-GLLK- 75 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~--~~i~~~~~~g~--~-------~~~~~~~~-~p~~gl~~~~~g-~l~~v~~~~-~-~i~~- 75 (173)
..-..||++|.+|..+.+ +.|.+...+|. . ....-..+ ... .+.+++|| |.+++.... + .++.
T Consensus 385 Lt~PS~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~-~lrvSrDG~R~Avi~~~~g~~~V~va 463 (573)
T PRK13614 385 LTRPSFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVK-ELRVSREGVRALVISEQNGKSRVQVA 463 (573)
T ss_pred ccCCcccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeE-EEEECCCccEEEEEEEeCCccEEEEE
Confidence 344577888899976643 47888765442 1 11111112 255 78889998 554555222 1 1222
Q ss_pred -E--ccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 76 -V--SEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 76 -~--~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
+ +.+| ...+.....-.....+.++..-.++.|.+..
T Consensus 464 ~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 464 GIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred EEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 1 3455 2444322110112467788888888877764
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=88.88 E-value=6.3 Score=32.69 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=40.3
Q ss_pred cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEEE
Q 030675 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv~ 169 (173)
...|.+-++|.|++.+.-.- .+..|.++-||.+-.....+... ....+.+.|+|-||++..+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence 47899999999997665321 11346788888764333333322 3445779999999966544
No 290
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=88.39 E-value=11 Score=29.76 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC--C--CcEEE--------------------ec---cccCccccceEEccCC
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP--N--GTWED--------------------WH---QVGSQSLLGLTTTKEN 61 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~--~--g~~~~--------------------~~---~~~~~p~~gl~~~~~g 61 (173)
...+++.++++|..+.+. .+..|-.|+. + ...+. +. ....... .+.|++.+
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs-~V~w~d~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS-SVVWSDAT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee-eEEEcCCC
Confidence 345778888999888666 6666666651 1 10100 00 1111234 67777755
Q ss_pred cEEEEEeCCCeEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030675 62 NVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD 138 (173)
Q Consensus 62 ~l~~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 138 (173)
-+ |-+...+.|...| ..| ...+... ...+.+...|.-++.++-. .+..+..+|
T Consensus 273 v~-yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs-----------------sdr~irl~D 328 (423)
T KOG0313|consen 273 VI-YSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS-----------------SDRHIRLWD 328 (423)
T ss_pred ce-EeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------CCCceeecC
Confidence 55 8777777787777 344 4433321 2557788888777777632 334566788
Q ss_pred CCCCeeEEee----ccccCcceEEEccCCCEEEEEe
Q 030675 139 PSTNQTSLVL----DGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 139 ~~~~~~~~~~----~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
|.++.-.++. ..-....++.|+|...+++++-
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 8876433332 2235567888888877777763
No 291
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=88.09 E-value=6.4 Score=32.91 Aligned_cols=95 Identities=8% Similarity=0.094 Sum_probs=54.1
Q ss_pred CCcceEEEcCCCCEEEEc----CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--
Q 030675 10 NHPEDVSVDGNGVLYTAT----GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-- 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~----~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-- 80 (173)
+....+.|+..|..+++. .+.+|+.....-+ ...+....+.+. ...|+|.--.|+||... .+...+- ..
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq-~v~FHPs~p~lfVaTq~-~vRiYdL~kqel 599 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ-RVKFHPSKPYLFVATQR-SVRIYDLSKQEL 599 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCcee-EEEecCCCceEEEEecc-ceEEEehhHHHH
Confidence 345567888888766444 2234544443322 233334456788 88999876665777533 3444442 23
Q ss_pred cEEEEeccCCccccCCccEEEcCCC-cEEEEe
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDG-SLYFTV 111 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~ 111 (173)
+..+.... .+...|+++|.| ++++..
T Consensus 600 vKkL~tg~-----kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 600 VKKLLTGS-----KWISSMSIHPNGDNLILGS 626 (733)
T ss_pred HHHHhcCC-----eeeeeeeecCCCCeEEEec
Confidence 33333222 366789999988 577764
No 292
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.90 E-value=1.1 Score=35.44 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=39.3
Q ss_pred CCcceEEEcC-CCCEEEEcCCCeEEEEcCC--C-cE-EEe--ccc---cCccccceEEc--cCC-cEEEEEeCCCeEEEE
Q 030675 10 NHPEDVSVDG-NGVLYTATGDGWIKRMHPN--G-TW-EDW--HQV---GSQSLLGLTTT--KEN-NVIIVCDSQQGLLKV 76 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~--g-~~-~~~--~~~---~~~p~~gl~~~--~~g-~l~~v~~~~~~i~~~ 76 (173)
.++||.++|. .|.||++..+..||+++.+ + .. ..+ ... ..... ||++= .+| .+|++++-++..+.+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvE-Glaly~~~~g~gYLivSsQG~~sf~V 286 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVE-GLALYYGSDGKGYLIVSSQGDNSFAV 286 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EE-EEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCcc-ceEEEecCCCCeEEEEEcCCCCeEEE
Confidence 4799999998 6899999988899999843 2 21 112 111 12456 77773 333 344666655443333
No 293
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=87.84 E-value=11 Score=28.99 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=42.9
Q ss_pred cCCcceEEEcCCC-CEEE-EcCCCeEEEEc---CCCcEEEec--------------cccCccccceEEccCCcEEEEEeC
Q 030675 9 VNHPEDVSVDGNG-VLYT-ATGDGWIKRMH---PNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDS 69 (173)
Q Consensus 9 ~~~p~~l~~~~~g-~l~~-~~~~~~i~~~~---~~g~~~~~~--------------~~~~~p~~gl~~~~~g~l~~v~~~ 69 (173)
-++.-.+.|.|.- .+.. +..+|.|.-|| ..|....+. ...+..+ |+++..+|+.++.|..
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn-gla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN-GLAWTSDARYLASCGT 266 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee-eeeecccchhhhhccC
Confidence 4556678888844 3333 34788877776 234332221 1223467 9999999988677766
Q ss_pred CCeEEEEcc-CC
Q 030675 70 QQGLLKVSE-EG 80 (173)
Q Consensus 70 ~~~i~~~~~-~g 80 (173)
.+++...+. .|
T Consensus 267 d~r~r~wn~~~G 278 (397)
T KOG4283|consen 267 DDRIRVWNMESG 278 (397)
T ss_pred ccceEEeecccC
Confidence 665555553 55
No 294
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.44 E-value=10 Score=28.31 Aligned_cols=82 Identities=13% Similarity=0.266 Sum_probs=48.4
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEeccCCccccCCccEEE-cCCCcEEEEeCcCCcCcccceeeec
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIE-ASDGSLYFTVSSTKFTPAEYYLDLV 126 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~-~~dG~~~v~~~~~~~~~~~~~~~~~ 126 (173)
..+ .+-++|..+-++.+.....++.++ .+| ++...+...+ ..+.++. ..++.++-
T Consensus 116 eIN-am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~~qils----------------- 173 (325)
T KOG0649|consen 116 EIN-AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNANGQILS----------------- 173 (325)
T ss_pred ccc-eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccCcceee-----------------
Confidence 346 888897655546666555678888 588 5554443221 3344444 33444433
Q ss_pred ccCCCceEEEEcCCCCeeEEeeccccCc
Q 030675 127 SGEPHGVLLKYDPSTNQTSLVLDGLYFA 154 (173)
Q Consensus 127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p 154 (173)
+..+|++-.+|.+|++...+......|
T Consensus 174 -G~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 174 -GAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred -cCCCccEEEEeccccceeEEeccccCh
Confidence 335678888888887766666554444
No 295
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=87.31 E-value=7.2 Score=32.28 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=39.6
Q ss_pred cCccccceEEccCCcEEEEEeCCCeEEEEccC-CcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030675 48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
...+. ..+++++.+.++++.....++.+|.+ +.+...... -.|+.++.+|+|.++++.+
T Consensus 259 ~s~v~-~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-----~~P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 259 PSQVI-CCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-----FIPTLIAWHPDGAIFVVGS 318 (545)
T ss_pred CCcce-EEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-----ccceEEEEcCCCcEEEEEc
Confidence 44566 78888887665666555567777754 344444321 3689999999999777643
No 296
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=87.27 E-value=9.8 Score=27.99 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=28.6
Q ss_pred ccCCcEEEEEeCCCeEEEEcc---CC-cEEEEeccCCcc--ccCCccEEEcCCCcEEEE
Q 030675 58 TKENNVIIVCDSQQGLLKVSE---EG-VTVLVSQFNGSQ--LRFANDVIEASDGSLYFT 110 (173)
Q Consensus 58 ~~~g~l~~v~~~~~~i~~~~~---~g-~~~~~~~~~~~~--~~~~~~l~~~~dG~~~v~ 110 (173)
+.+|-+ +++......+++++ .. +..+.+...+.. ......+++||.|+++++
T Consensus 191 swn~~m-~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 191 SWNGAM-FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred EecCcE-EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 345545 55544444444432 22 444443333222 234577899999999987
No 297
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.14 E-value=1.4 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=10.9
Q ss_pred ceEEEccCCCEEEEE
Q 030675 155 NGVALSEDERFLVVC 169 (173)
Q Consensus 155 ~gi~~~~dg~~lyv~ 169 (173)
...+|||||++|+.+
T Consensus 12 ~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFT 26 (39)
T ss_dssp EEEEE-TTSSEEEEE
T ss_pred cCEEEecCCCEEEEE
Confidence 457899999988775
No 298
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=86.94 E-value=3.8 Score=32.56 Aligned_cols=21 Identities=29% Similarity=0.080 Sum_probs=17.9
Q ss_pred cCcceEEEccCCCEEEEEecC
Q 030675 152 YFANGVALSEDERFLVVCESW 172 (173)
Q Consensus 152 ~~p~gi~~~~dg~~lyv~~~~ 172 (173)
..|.=|.+|-||++||||++.
T Consensus 389 GGPQMlQLSLDGKRLYVt~SL 409 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNSL 409 (476)
T ss_pred CCceeEEeccCCcEEEEEchh
Confidence 457779999999999999873
No 299
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=86.89 E-value=18 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.7
Q ss_pred ceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 54 GLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
.++.-+++ . |++...+..++++..|
T Consensus 145 Av~~l~e~-~-~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 145 AVASLPEN-T-YVTGSADKTIKLWKGG 169 (745)
T ss_pred eeeecCCC-c-EEeccCcceeeeccCC
Confidence 44555665 5 7777777778777655
No 300
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.81 E-value=1.6 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=10.9
Q ss_pred CceEEEEcCCCCee
Q 030675 131 HGVLLKYDPSTNQT 144 (173)
Q Consensus 131 ~~~v~~~d~~~~~~ 144 (173)
++.++.+|+++|+.
T Consensus 15 ~g~l~a~d~~~G~~ 28 (33)
T smart00564 15 DGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEEcccCcE
Confidence 37899999887764
No 301
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.50 E-value=4.4 Score=32.66 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=29.6
Q ss_pred ccccceEEccCCcEEEEEeCCCe-EEEEc-cCC--cEEEEec-------------cCCcc-ccCCccEEEcCCC-cEEEE
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG--VTVLVSQ-------------FNGSQ-LRFANDVIEASDG-SLYFT 110 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~-i~~~~-~~g--~~~~~~~-------------~~~~~-~~~~~~l~~~~dG-~~~v~ 110 (173)
-+. .|.++.|.|+||+++..++ +...| .|- .+..... ..+++ ...|.-|.++-|| ++|||
T Consensus 313 Lit-DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LIT-DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceE-eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 356 7888899999999998876 55555 232 2222211 11122 2368899999999 59999
Q ss_pred eC
Q 030675 111 VS 112 (173)
Q Consensus 111 ~~ 112 (173)
++
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 64
No 302
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.48 E-value=15 Score=29.18 Aligned_cols=93 Identities=10% Similarity=0.129 Sum_probs=43.6
Q ss_pred eEEEcCCCCEE-EE-cCCC----eEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-----------CeEEE
Q 030675 14 DVSVDGNGVLY-TA-TGDG----WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----------QGLLK 75 (173)
Q Consensus 14 ~l~~~~~g~l~-~~-~~~~----~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----------~~i~~ 75 (173)
+..++|+|+.+ ++ +.+| .|+.+|. +|+...-.-...... +++|.++++.+|..... ..+++
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 45677777543 22 2222 3566665 454332111111233 48999998776655422 23555
Q ss_pred Ecc-CC-c--EEEEeccCCccccCCccEEEcCCCcEEE
Q 030675 76 VSE-EG-V--TVLVSQFNGSQLRFANDVIEASDGSLYF 109 (173)
Q Consensus 76 ~~~-~g-~--~~~~~~~~~~~~~~~~~l~~~~dG~~~v 109 (173)
+.. ++ . ..+....+. ++ ..-++..++||+..+
T Consensus 207 ~~~gt~~~~d~lvfe~~~~-~~-~~~~~~~s~d~~~l~ 242 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDE-PF-WFVSVSRSKDGRYLF 242 (414)
T ss_dssp EETTS-GGG-EEEEC-TTC-TT-SEEEEEE-TTSSEEE
T ss_pred EECCCChHhCeeEEeecCC-Cc-EEEEEEecCcccEEE
Confidence 553 33 2 233322211 11 234678889997444
No 303
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.38 E-value=14 Score=28.98 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=68.4
Q ss_pred EEEcCCCCEEEEc-CCCeEEEEcC-CC-------------cEEEeccccCccccceEEcc-----CCcEEEEEeCCCeEE
Q 030675 15 VSVDGNGVLYTAT-GDGWIKRMHP-NG-------------TWEDWHQVGSQSLLGLTTTK-----ENNVIIVCDSQQGLL 74 (173)
Q Consensus 15 l~~~~~g~l~~~~-~~~~i~~~~~-~g-------------~~~~~~~~~~~p~~gl~~~~-----~g~l~~v~~~~~~i~ 74 (173)
+.+..||.|+.+. .+..+..|-. ++ +...|.+....|. +. .. .+.+ .+....++++
T Consensus 241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~--i~-~at~~~~~~~~-l~s~SrDktI 316 (406)
T KOG0295|consen 241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS--IS-EATGSTNGGQV-LGSGSRDKTI 316 (406)
T ss_pred EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc--hh-hccCCCCCccE-EEeecccceE
Confidence 4555588888766 5566666642 22 1122323222222 11 11 2234 3333445666
Q ss_pred EEc--cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030675 75 KVS--EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG 150 (173)
Q Consensus 75 ~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 150 (173)
++. ..| +-++... .++..+++++|-|+.+++.. .+++|-.+|..+++.......
T Consensus 317 k~wdv~tg~cL~tL~gh-----dnwVr~~af~p~Gkyi~Sca-----------------DDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGH-----DNWVRGVAFSPGGKYILSCA-----------------DDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred EEEeccCCeEEEEEecc-----cceeeeeEEcCCCeEEEEEe-----------------cCCcEEEEEeccceeeeccCC
Confidence 665 366 3333322 16889999999999888753 346788888877776555442
Q ss_pred -ccCcceEEEccCCCEEEEE
Q 030675 151 -LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 151 -~~~p~gi~~~~dg~~lyv~ 169 (173)
..+-+.+.|.-+ ..||.
T Consensus 375 h~hfvt~lDfh~~--~p~Vv 392 (406)
T KOG0295|consen 375 HEHFVTSLDFHKT--APYVV 392 (406)
T ss_pred CcceeEEEecCCC--CceEE
Confidence 223344555433 34554
No 304
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=85.95 E-value=2.3 Score=31.88 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=39.6
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCc-EEEeccccCccccceEEccCCcEEEEEeCC
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
.+..++.+-||++++.+. .+++|..++ .+.+ +....-..+..+ .++|+++-.+ ..+...
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn-~vAfspd~~l-mAaask 313 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN-AVAFSPDCEL-MAAASK 313 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee-EEEeCCCCch-hhhccC
Confidence 456789999999999877 777776664 3443 222233446677 9999999666 444333
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=85.90 E-value=13 Score=29.38 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=31.5
Q ss_pred cceEEEcC-CCCEEEEcCCCeEEEEc---CC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030675 12 PEDVSVDG-NGVLYTATGDGWIKRMH---PN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK 75 (173)
Q Consensus 12 p~~l~~~~-~g~l~~~~~~~~i~~~~---~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~ 75 (173)
|+.+.+.. +....+++..|.++.++ .+ +..........+.. .+++++|++++..||....|..
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDRDEkIRv 177 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADRDEKIRV 177 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecCCceEEE
Confidence 44444444 23444444444444443 11 33333323334566 8888888888566665543333
No 306
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=85.87 E-value=14 Score=31.46 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=62.4
Q ss_pred CCcceEEEcCCC-CEEEEcCCCeEEEEcCCCc---EEE---eccccC---ccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030675 10 NHPEDVSVDGNG-VLYTATGDGWIKRMHPNGT---WED---WHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVSE- 78 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~---~~~---~~~~~~---~p~~gl~~~~~g~l~~v~~~~~~i~~~~~- 78 (173)
+=..++-|.|.+ .|..+.++..++.|.++.. ++. +-+.++ .-. |..++++++. +++....|-+++..
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~-ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNV-IIAHGRTGGFHLWKT 345 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCE-EEEecccCcEEEEec
Confidence 334568889988 5666668888888876543 432 222222 235 6778899988 88877766666554
Q ss_pred -CCcEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030675 79 -EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 79 -~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
+............-+....+++.+|.|.++.+.
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEe
Confidence 322222222222223467899999999988874
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=85.47 E-value=2.3 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=21.0
Q ss_pred cCCcceEEEcCCCCEEEEc-CCCeEEEEc
Q 030675 9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMH 36 (173)
Q Consensus 9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~ 36 (173)
-....++++.|++..+++. .++.|..||
T Consensus 11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 11 SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4667889999988766555 778887764
No 308
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=84.78 E-value=16 Score=28.17 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=38.7
Q ss_pred ccccCccccceEEccCCcEEEEEeCC-CeEEEEc--cCC--cEEEEeccCCccccCCccEEEcCCCcEEEE
Q 030675 45 HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 45 ~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
..+-.... .++++.+|.+ +.+... ..++|+. .+| ...+.+..+. .....|+++|+..+..+
T Consensus 178 ~AH~s~Ia-cv~Ln~~Gt~-vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 178 NAHDSDIA-CVALNLQGTL-VATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EcccCcee-EEEEcCCccE-EEEeccCcEEEEEEEcCCCcEeeeeecCCch---heEEEEEeCCCccEEEE
Confidence 34444556 8899999998 555444 4577776 366 5555544432 35567899998865444
No 309
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=84.74 E-value=1.4 Score=22.43 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=17.2
Q ss_pred eEEEcCCCCEEEEcCCCeEEEEcCC
Q 030675 14 DVSVDGNGVLYTATGDGWIKRMHPN 38 (173)
Q Consensus 14 ~l~~~~~g~l~~~~~~~~i~~~~~~ 38 (173)
++++. +|.+|+.+.++.++.+|++
T Consensus 16 ~~~v~-~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EEC-TSEEEEE-TTSEEEEEETT
T ss_pred CCEEE-CCEEEEEcCCCEEEEEeCC
Confidence 44554 7899999999999999853
No 310
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=84.59 E-value=16 Score=28.12 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=39.1
Q ss_pred CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEE-EcCCCCe-eEEeeccc--cCcceEEEccCCCEEEEE
Q 030675 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK-YDPSTNQ-TSLVLDGL--YFANGVALSEDERFLVVC 169 (173)
Q Consensus 96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~-~~~~~~~~--~~p~gi~~~~dg~~lyv~ 169 (173)
..-+++.-+|.+..|.+ ..|++.| ||..+|+ +..+..|. ....-|+|||+..+|.|+
T Consensus 184 Iacv~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 184 IACVALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred eeEEEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 45578888998888743 3467765 6777665 34444443 444689999999888775
No 311
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.53 E-value=3.9 Score=32.43 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=37.8
Q ss_pred eEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccC---ccccceEEccCCcEEEEEeC
Q 030675 14 DVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDS 69 (173)
Q Consensus 14 ~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~---~p~~gl~~~~~g~l~~v~~~ 69 (173)
-++|+|++.+..+. .+|.|+.|+. .|+++....... ... .++|++.|+.|..++.
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~-s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAIT-SLSWNPSGSGLLSADK 451 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceE-EEEEcCCCchhhcccC
Confidence 37888988766555 8999999985 567766544332 345 7888888877454443
No 312
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.54 E-value=8.3 Score=31.25 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=23.2
Q ss_pred CeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030675 71 QGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS 112 (173)
Q Consensus 71 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~ 112 (173)
+|++.++. +..+.++...-. ..-.++|+++++|+..+|.+
T Consensus 272 nGtVSlWSP~skePLvKiLcH--~g~V~siAv~~~G~YMaTtG 312 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCH--RGPVSSIAVDRGGRYMATTG 312 (545)
T ss_pred CceEEecCCCCcchHHHHHhc--CCCcceEEECCCCcEEeecc
Confidence 45666653 223333332111 12468899999999888853
No 313
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.29 E-value=26 Score=29.46 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=66.2
Q ss_pred CCCEEEEc-CCC-----eEEEEcCC-CcEEEecccc--CccccceEEccCCcEEEEEeCCC-------eEEEEcc-CC-c
Q 030675 20 NGVLYTAT-GDG-----WIKRMHPN-GTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQ-------GLLKVSE-EG-V 81 (173)
Q Consensus 20 ~g~l~~~~-~~~-----~i~~~~~~-g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~~~-------~i~~~~~-~g-~ 81 (173)
+|.||+.. .+| .+.++|+. .+|....+-. .... |.+. -+|++ |++.... .+.+.|+ .+ .
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv~~-~~g~i-Yi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GVAV-LGGKL-YIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee-EEEE-ECCEE-EEEcCcCCCccccceEEEEcCCCCce
Confidence 78899655 332 47788864 4566543222 1223 3333 56677 9886532 3555665 33 2
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCcceEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVAL 159 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p~gi~~ 159 (173)
+...... ....-.+++.- +|.||+.=+... .....++.+|||.+.+-..+..- ....-|++.
T Consensus 457 ~~~~~M~---~~R~~~g~a~~-~~~iYvvGG~~~------------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 457 TLIAPMN---TRRSGFGVAVL-NGKIYVVGGFDG------------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred eecCCcc---cccccceEEEE-CCEEEEECCccC------------CCccceEEEEcCCCCceeEcccCccccccccEEE
Confidence 3222211 11233445544 678999733211 01223699999998776666421 122223333
Q ss_pred ccCCCEEEEE
Q 030675 160 SEDERFLVVC 169 (173)
Q Consensus 160 ~~dg~~lyv~ 169 (173)
.+..+|+.
T Consensus 521 --~~~~ly~v 528 (571)
T KOG4441|consen 521 --LGGKLYAV 528 (571)
T ss_pred --ECCEEEEE
Confidence 33457765
No 314
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=82.93 E-value=3.7 Score=22.88 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=22.1
Q ss_pred cceEEEcCCCCEEEEcC--------CCeEEEEcCCCcEE
Q 030675 12 PEDVSVDGNGVLYTATG--------DGWIKRMHPNGTWE 42 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~--------~~~i~~~~~~g~~~ 42 (173)
...+++.|+|+|+++.. +..|.|++++|.+-
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLD 41 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLD 41 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCcc
Confidence 46789999999886551 23477888888753
No 315
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.90 E-value=9.1 Score=32.91 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=68.2
Q ss_pred EEcCCCeEEEEcCCC--c---EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cEEEEeccCCccccC
Q 030675 25 TATGDGWIKRMHPNG--T---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VTVLVSQFNGSQLRF 95 (173)
Q Consensus 25 ~~~~~~~i~~~~~~g--~---~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~~~~~~~~~~~~~~ 95 (173)
++..+|.|-.||..- + +..+.+.....+ .+.|++-.-.++++...++.+++.+ +. ...+... -.+
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-----SES 178 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-----SES 178 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeeccccccccccc-----chh
Confidence 444678888888533 1 223445555667 8888875433367766667666552 22 3333221 247
Q ss_pred CccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc----ceEEEccCCCEEEEEe
Q 030675 96 ANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA----NGVALSEDERFLVVCE 170 (173)
Q Consensus 96 ~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p----~gi~~~~dg~~lyv~~ 170 (173)
..++.+.| .+..|++-. .+|.|..+|.. ++......+..= --+-|+|++ -|++.
T Consensus 179 iRDV~fsp~~~~~F~s~~-----------------dsG~lqlWDlR--qp~r~~~k~~AH~GpV~c~nwhPnr--~~lAT 237 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIH-----------------DSGYLQLWDLR--QPDRCEKKLTAHNGPVLCLNWHPNR--EWLAT 237 (839)
T ss_pred hhceeeccCCCceEEEec-----------------CCceEEEeecc--CchhHHHHhhcccCceEEEeecCCC--ceeee
Confidence 78899998 466666532 34788888874 333332222222 236667854 34554
Q ss_pred cCC
Q 030675 171 SWK 173 (173)
Q Consensus 171 ~~~ 173 (173)
.+|
T Consensus 238 GGR 240 (839)
T KOG0269|consen 238 GGR 240 (839)
T ss_pred cCC
Confidence 444
No 316
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.85 E-value=26 Score=29.12 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.4
Q ss_pred eEEEccCCCEEEEEe
Q 030675 156 GVALSEDERFLVVCE 170 (173)
Q Consensus 156 gi~~~~dg~~lyv~~ 170 (173)
+++++|+.+.+|+.-
T Consensus 391 ~~A~Dp~~g~~yvp~ 405 (527)
T TIGR03075 391 PMAYSPKTGLFYVPA 405 (527)
T ss_pred CceECCCCCEEEEec
Confidence 488999999999854
No 317
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=82.47 E-value=36 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred CCceEEEE----cCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030675 130 PHGVLLKY----DPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 130 ~~~~v~~~----d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
.+|.|..+ ++++..++.+..--.....++||||+..|.++.
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 34788888 887778888776667788999999999888764
No 318
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=82.44 E-value=20 Score=27.52 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=61.0
Q ss_pred CCcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccC-----ccccceEEccCCcEEEEEeCCCeEEEEccCC---
Q 030675 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGS-----QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--- 80 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~-----~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--- 80 (173)
....+|+|..+.+-|+....+.|++-.-.| .+........ .-+ .+.++.+ +. |++... +++....||
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~~~-~g-~ivG~~-g~ll~T~DgG~t 92 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFDGN-EG-WIVGEP-GLLLHTTDGGKT 92 (302)
T ss_dssp S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEETT-EE-EEEEET-TEEEEESSTTSS
T ss_pred CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEecCC-ce-EEEcCC-ceEEEecCCCCC
Confidence 356778888767777766677788774233 3555432211 234 6666543 45 665433 455555544
Q ss_pred cEEEE--eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceE
Q 030675 81 VTVLV--SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV 157 (173)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi 157 (173)
.+.+. ..+++ .+..+....++.++++. ..|.||+-.-.+..=+.+. ......+.+
T Consensus 93 W~~v~l~~~lpg----s~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~ 150 (302)
T PF14870_consen 93 WERVPLSSKLPG----SPFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDI 150 (302)
T ss_dssp -EE----TT-SS-----EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEE
T ss_pred cEEeecCCCCCC----CeeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeE
Confidence 33332 12232 33444444455544432 1256666544322222322 223445566
Q ss_pred EEccCCCEEEEEec
Q 030675 158 ALSEDERFLVVCES 171 (173)
Q Consensus 158 ~~~~dg~~lyv~~~ 171 (173)
..++||+++.|+..
T Consensus 151 ~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 151 TRSSDGRYVAVSSR 164 (302)
T ss_dssp EE-TTS-EEEEETT
T ss_pred EECCCCcEEEEECc
Confidence 77788887766644
No 319
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=81.86 E-value=32 Score=29.41 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCCeEEEEcCC-Cc-EEEeccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CCcEEEEeccCCccccCCccEEEcC
Q 030675 28 GDGWIKRMHPN-GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EGVTVLVSQFNGSQLRFANDVIEAS 103 (173)
Q Consensus 28 ~~~~i~~~~~~-g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~ 103 (173)
.+-.|..||.. ++ ..++....+... +++++++|+. ..+--.++ +....+ .+.+.+... .+..-.+-..|.+.=
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRR-IATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWAC 774 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcc-eeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEe
Confidence 45566666642 22 223334455677 9999999988 43332333 444444 333333221 111112334455666
Q ss_pred CCcEEEE
Q 030675 104 DGSLYFT 110 (173)
Q Consensus 104 dG~~~v~ 110 (173)
||++.++
T Consensus 775 dgr~viv 781 (1012)
T KOG1445|consen 775 DGRIVIV 781 (1012)
T ss_pred cCcEEEE
Confidence 7775554
No 320
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.07 E-value=17 Score=34.32 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=29.7
Q ss_pred ceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEE
Q 030675 13 EDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIV 66 (173)
Q Consensus 13 ~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v 66 (173)
.||..+++|..|-- .+++||++++. ++|.........+.+.|....||++ |.
T Consensus 366 Tgv~~~~~ge~lRl-Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~l-YA 418 (1774)
T PF11725_consen 366 TGVHTDPDGEQLRL-HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKL-YA 418 (1774)
T ss_pred hccccCCCCCeEEe-ecCceeeeccccceecCCCCcccchhhhhcccCCCce-Ee
Confidence 34555555554421 34678888764 4555432333344446777788888 86
No 321
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.98 E-value=23 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.9
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW 41 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~ 41 (173)
....+|..+++|.++++. ....|+++++ +|++
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I 177 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI 177 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcE
Confidence 455678888899988888 5677999984 5554
No 322
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.78 E-value=33 Score=28.89 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=58.3
Q ss_pred CCCEEEEc-CC------CeEEEEcC-CCcEEEeccc--cCccccceEEccCCcEEEEEeCCC------eEEEEccCC--c
Q 030675 20 NGVLYTAT-GD------GWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ------GLLKVSEEG--V 81 (173)
Q Consensus 20 ~g~l~~~~-~~------~~i~~~~~-~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~------~i~~~~~~g--~ 81 (173)
+|.||+.. .+ ..++++|+ .++|..+.+- ...-. |++. -+|.+ |+....+ .+-+.|+.. .
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~i-YavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKL-YAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEE-EEEeccccccccccEEEecCCCCcc
Confidence 67899766 33 24778886 4566664321 11223 4444 45566 8876443 355666533 3
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL 148 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 148 (173)
+.++..... ..-.+++. -+|.+|+.-+.... ...-.++.+|||.+.+-+...
T Consensus 409 ~~va~m~~~---r~~~gv~~-~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 409 TPVAPMLTR---RSGHGVAV-LGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred cccCCCCcc---eeeeEEEE-ECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecC
Confidence 333322111 12233332 37899998433111 002258999999987654443
No 323
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=80.57 E-value=28 Score=27.85 Aligned_cols=129 Identities=11% Similarity=0.048 Sum_probs=64.2
Q ss_pred ceEEEcC-CCCEEEEc-CCCeEEEEc-CCCcEE--------EeccccCccccceEEccCC-cEEEEEeCCCeEEEEc--c
Q 030675 13 EDVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWE--------DWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS--E 78 (173)
Q Consensus 13 ~~l~~~~-~g~l~~~~-~~~~i~~~~-~~g~~~--------~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~--~ 78 (173)
-.++|.| +.....+. .+-.|..|. +++.+. .+..+..... -++++|.- ++ ..+......+.++ .
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg-~V~wHPtA~NV-Llsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG-LVQWHPTAPNV-LLSAGSDNTVSIWNVG 162 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE-EEeecccchhh-HhhccCCceEEEEecc
Confidence 3467777 45566554 555677776 444221 1111222334 45566542 34 3333333344444 2
Q ss_pred CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcce
Q 030675 79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANG 156 (173)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~g 156 (173)
+|...+.-..+ .....+.+..||.+++|.- .+.+|-.+||.++++..-. .....|.-
T Consensus 163 tgeali~l~hp----d~i~S~sfn~dGs~l~Ttc-----------------kDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 163 TGEALITLDHP----DMVYSMSFNRDGSLLCTTC-----------------KDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred CCceeeecCCC----CeEEEEEeccCCceeeeec-----------------ccceeEEEcCCCCcEeeecccccCCCcce
Confidence 55322221111 1345688889999888732 3468888898877643222 11233334
Q ss_pred EEEccCCC
Q 030675 157 VALSEDER 164 (173)
Q Consensus 157 i~~~~dg~ 164 (173)
..|-.+|+
T Consensus 222 aifl~~g~ 229 (472)
T KOG0303|consen 222 AIFLASGK 229 (472)
T ss_pred eEEeccCc
Confidence 44555555
No 324
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.43 E-value=33 Score=28.63 Aligned_cols=139 Identities=13% Similarity=0.209 Sum_probs=67.8
Q ss_pred CcceEEEcC-CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccC-----ccccce-EEccCCcEEEEEeCCCeEEEEcc-
Q 030675 11 HPEDVSVDG-NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGS-----QSLLGL-TTTKENNVIIVCDSQQGLLKVSE- 78 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~-----~p~~gl-~~~~~g~l~~v~~~~~~i~~~~~- 78 (173)
.|+-+..+. +..|.+.+ ...++|++|. -|+++ .|...-. .|.+-. ..-+. .. .|.-...+++++|+
T Consensus 468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~e-qt-lvGlS~~svFrIDPR 545 (776)
T COG5167 468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDE-QT-LVGLSDYSVFRIDPR 545 (776)
T ss_pred ChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCcc-ce-EEeecccceEEeccc
Confidence 355555554 45555555 4567899985 45543 3321111 111000 01133 33 44445567999996
Q ss_pred -CCcEEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcc
Q 030675 79 -EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFAN 155 (173)
Q Consensus 79 -~g~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~ 155 (173)
.|....+.. -+-...+..+......+|.+-++... |-|-.||--+-+......+ .....
T Consensus 546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~k------------------GDirLyDRig~rAKtalP~lG~aIk 607 (776)
T COG5167 546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRK------------------GDIRLYDRIGKRAKTALPGLGDAIK 607 (776)
T ss_pred ccCCceeeeeehhccccccccccccccCceEEEecCC------------------CceeeehhhcchhhhcCccccccee
Confidence 452211111 11111234455666677877666432 4555555322122222222 24456
Q ss_pred eEEEccCCCEEEEE
Q 030675 156 GVALSEDERFLVVC 169 (173)
Q Consensus 156 gi~~~~dg~~lyv~ 169 (173)
+|..+.+|+++..+
T Consensus 608 ~idvta~Gk~ilaT 621 (776)
T COG5167 608 HIDVTANGKHILAT 621 (776)
T ss_pred eeEeecCCcEEEEe
Confidence 88889999977654
No 325
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=80.38 E-value=27 Score=27.66 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCccCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC-c
Q 030675 6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG-V 81 (173)
Q Consensus 6 ~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g-~ 81 (173)
.|-....+.+.|.+.+.+|-+..+..|.+||. .|+...-......-+ .+...+.-++ ++|......+++ |+ .+ -
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~-~i~~~~~~~L-l~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLN-CISYSPLSKL-LASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCccee-Eeecccccce-eeecCCCCceeecCCCCCCC
Confidence 44456677899999889998889999999995 444333223333445 8888888788 777666555554 44 33 2
Q ss_pred EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
..+...+-+.. +....+..+|... ++++
T Consensus 335 s~v~~s~~gH~-nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 335 SVVSQSLIGHK-NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ceeEEeeecch-hhhhheecCCCCceEEEE
Confidence 22222222222 4677788888654 4443
No 326
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=79.87 E-value=21 Score=26.41 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=43.8
Q ss_pred CCcceEEEcC-CCCEEEEcCCCeEEEEcC-CCcEEEe--c----cccCccccceEEccC-CcEEEEEeCCCeEEEEcc-C
Q 030675 10 NHPEDVSVDG-NGVLYTATGDGWIKRMHP-NGTWEDW--H----QVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVSE-E 79 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~~~~~i~~~~~-~g~~~~~--~----~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~~-~ 79 (173)
+..-|+.+-| +|.||.-...++||.+++ +|....+ . ...+.+. |+-|+|- .|+ .+......-+|+++ +
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~-gvDFNP~aDRl-Rvvs~~GqNlR~npdt 104 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAF-GVDFNPAADRL-RVVSNTGQNLRLNPDT 104 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceE-EEecCcccCcE-EEEccCCcEEEECCCC
Confidence 4466788888 899996667789999996 5655444 1 1123356 7778774 244 44433334666774 4
Q ss_pred C
Q 030675 80 G 80 (173)
Q Consensus 80 g 80 (173)
|
T Consensus 105 G 105 (236)
T PF14339_consen 105 G 105 (236)
T ss_pred C
Confidence 5
No 327
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=79.64 E-value=22 Score=26.24 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=46.3
Q ss_pred ccccceEEcc-CCcEEEEEeCCCeEEEEcc-CC-cEEEE-eccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceee
Q 030675 50 QSLLGLTTTK-ENNVIIVCDSQQGLLKVSE-EG-VTVLV-SQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLD 124 (173)
Q Consensus 50 ~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~-~g-~~~~~-~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~ 124 (173)
... ||.+-| +|+| |......+++.+++ +| .+.+. ...........-++.|.| -.+|-|..
T Consensus 28 ~l~-GID~Rpa~G~L-Ygl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs------------- 92 (236)
T PF14339_consen 28 SLV-GIDFRPANGQL-YGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS------------- 92 (236)
T ss_pred eEE-EEEeecCCCCE-EEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc-------------
Confidence 445 888876 5666 87766678999996 67 44442 111111112245566666 23565542
Q ss_pred ecccCCCceEEEEcCCCCeeEEee
Q 030675 125 LVSGEPHGVLLKYDPSTNQTSLVL 148 (173)
Q Consensus 125 ~~~~~~~~~v~~~d~~~~~~~~~~ 148 (173)
..+.-+|+++++|.+....
T Consensus 93 -----~~GqNlR~npdtGav~~~D 111 (236)
T PF14339_consen 93 -----NTGQNLRLNPDTGAVTIVD 111 (236)
T ss_pred -----cCCcEEEECCCCCCceecc
Confidence 2367788898888754343
No 328
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=78.97 E-value=24 Score=28.31 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=52.2
Q ss_pred CCcceEEEcC-CCCEEEEc-CCCeEEEEcC-CC--cEEEec-cccCccccceEEccCCcEEEEEeCCC-eEEEEccCC-c
Q 030675 10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NG--TWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-V 81 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g--~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~ 81 (173)
...+.++|.+ ...||.+. .++++..+|. .+ +..... ...+..+ .++|+|-+..++.+...+ .+...|.-. .
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee-EEEeCCCCCceEEeccCCCcEEEeechhcc
Confidence 3456788888 55777544 6677888873 21 222222 2234456 999998666635554433 455555433 2
Q ss_pred EEEEeccCCccccCCccEEEcCCC-cEEEEe
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDG-SLYFTV 111 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~ 111 (173)
..+... .+.. .-...+.++|.- +++.+.
T Consensus 307 ~~lh~~-e~H~-dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 307 KPLHTF-EGHE-DEVFQVEWSPHNETVLASS 335 (422)
T ss_pred cCceec-cCCC-cceEEEEeCCCCCceeEec
Confidence 222211 1110 134557777854 466653
No 329
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=78.43 E-value=11 Score=29.54 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCCEEEEcCCCeEEEEcCCCcE----E-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CCcEEEEeccCCcc
Q 030675 20 NGVLYTATGDGWIKRMHPNGTW----E-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFNGSQ 92 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~~g~~----~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~~~~~~~~~ 92 (173)
+|.+..+..+..|..|+.+... . .+.......+ -+ +-+.++ .|+..+++.++++. ++ .+...+.+
T Consensus 287 ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-vV--dfd~ky-IVsASgDRTikvW~~st~--efvRtl~g-- 358 (499)
T KOG0281|consen 287 NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VV--DFDDKY-IVSASGDRTIKVWSTSTC--EFVRTLNG-- 358 (499)
T ss_pred CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-ee--ccccce-EEEecCCceEEEEeccce--eeehhhhc--
Confidence 4555555555555555532211 0 0112223344 34 444557 67777777666664 33 12222222
Q ss_pred ccCCccEEEcC-CCcEEEEe
Q 030675 93 LRFANDVIEAS-DGSLYFTV 111 (173)
Q Consensus 93 ~~~~~~l~~~~-dG~~~v~~ 111 (173)
+-.+|+.-. +|++.|+-
T Consensus 359 --HkRGIAClQYr~rlvVSG 376 (499)
T KOG0281|consen 359 --HKRGIACLQYRDRLVVSG 376 (499)
T ss_pred --ccccceehhccCeEEEec
Confidence 335566655 67777763
No 330
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=77.76 E-value=42 Score=28.38 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcE
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNV 63 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l 63 (173)
..-.+|.++|.|...++. .+|.+..|- .+|+........+... .++|+|.+++
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~vaw~P~~~~ 455 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SVAWNPLSDL 455 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EEEecCCCCc
Confidence 345678888877766666 556554444 4676655444445566 7777776543
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.41 E-value=29 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=37.9
Q ss_pred EcCC-CCEEEEcCCCeEEEEcCCC--cEEEeccccC-ccccceEEcc-CCcEEEEEeCCCeEEEEcc-CC
Q 030675 17 VDGN-GVLYTATGDGWIKRMHPNG--TWEDWHQVGS-QSLLGLTTTK-ENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 17 ~~~~-g~l~~~~~~~~i~~~~~~g--~~~~~~~~~~-~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~-~g 80 (173)
.|++ |-+|.+..++..|.+|+.. .+.+. ..++ .-. +.++++ ++.+ |++.....++.+.. ++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyks-kcgG~~f~-sP~i~~g~~sl-y~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKS-KCGGGTFV-SPVIAPGDGSL-YAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEec-ccCCceec-cceecCCCceE-EEEeccceEEEEccCCC
Confidence 3454 4677777778888887533 33332 2332 233 666777 6777 99887777888875 44
No 332
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.34 E-value=5 Score=20.11 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=10.3
Q ss_pred CCceEEEEcCCCCee
Q 030675 130 PHGVLLKYDPSTNQT 144 (173)
Q Consensus 130 ~~~~v~~~d~~~~~~ 144 (173)
.+|.|+-+|+++|+.
T Consensus 8 ~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 8 PDGYLYALDAKTGKV 22 (38)
T ss_dssp TTSEEEEEETTTTSE
T ss_pred CCCEEEEEECCCCCE
Confidence 346777777777764
No 333
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=77.23 E-value=40 Score=27.83 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=35.9
Q ss_pred CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
-|.+.++|.++..+... + +...|.+..+|+.+....+-+-...+..-+.|+||+++++.+-+
T Consensus 318 rNT~~fsp~~r~il~ag---F-----------~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 318 RNTIFFSPHERYILFAG---F-----------DNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred cccccccCcccEEEEec---C-----------CccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCC
Confidence 36788888877433311 1 11236788889874433221322333345779999998777543
No 334
>KOG4328 consensus WD40 protein [Function unknown]
Probab=76.88 E-value=39 Score=27.49 Aligned_cols=111 Identities=10% Similarity=0.045 Sum_probs=60.5
Q ss_pred ceEEEcC-CCCEEEEcCCCeEEEEcCC---Cc----EEEeccc-c-C--ccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 13 EDVSVDG-NGVLYTATGDGWIKRMHPN---GT----WEDWHQV-G-S--QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 13 ~~l~~~~-~g~l~~~~~~~~i~~~~~~---g~----~~~~~~~-~-~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
....|+| +|+|..+..+..|..+|.. .. ....+.. . . .|- -.+|+|+-.++++......|=.++..|
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEEEeccCcceeEEcCCC
Confidence 4567888 5676666677788887642 10 1111111 1 1 244 556889888866666555666666666
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS 140 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 140 (173)
-+.+.....-....-|.-..++|-+..|++-. ...|.||.|..+
T Consensus 452 ~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~----------------~s~Gki~vft~k 495 (498)
T KOG4328|consen 452 GQMVCELHDPESSTIPSVNEFHPMRDTLAAGG----------------NSSGKIYVFTNK 495 (498)
T ss_pred CEEeeeccCccccccccceeecccccceeccC----------------CccceEEEEecC
Confidence 33333221111113455567788766455421 245788887654
No 335
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.67 E-value=52 Score=28.88 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCeEEEEcC-CCc
Q 030675 20 NGVLYTATGDGWIKRMHP-NGT 40 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~-~g~ 40 (173)
++.||+++..+.|+.+|. +|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk 215 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGK 215 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCc
Confidence 789999998889999995 564
No 336
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=75.73 E-value=35 Score=26.37 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCeEEEEcC---CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCccc
Q 030675 20 NGVLYTATGDGWIKRMHP---NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQL 93 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~~---~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~ 93 (173)
+...|+++....++.+|. +.- ..-+.+..+... |. +-.|+.+||++...+.+.+|- +- .-+++.......
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv--~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~- 171 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GV--YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG- 171 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EE--EecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC-
Confidence 457888886666777762 221 111222223344 43 456778899998888888884 33 333333222110
Q ss_pred cCCccEEEcCCCcEEEEeCc
Q 030675 94 RFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~~~~ 113 (173)
.-.++++++.+ ..|+++..
T Consensus 172 ~d~~~v~ISGn-~AYvA~~d 190 (370)
T COG5276 172 GDTHDVAISGN-YAYVAWRD 190 (370)
T ss_pred CCceeEEEecC-eEEEEEeC
Confidence 11256777643 56777543
No 337
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.71 E-value=54 Score=28.56 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=50.7
Q ss_pred cceEEEcC-CCCEEEEc-CCCeEEEEcC--CCcEEEeccccCccccceEEccC-CcEEEEEeCCCeEEEEcc----CC-c
Q 030675 12 PEDVSVDG-NGVLYTAT-GDGWIKRMHP--NGTWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVSE----EG-V 81 (173)
Q Consensus 12 p~~l~~~~-~g~l~~~~-~~~~i~~~~~--~g~~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~~----~g-~ 81 (173)
...+.|++ .-++.++. .+|.|-.||. +.....+........ .++|++. ++. |++...+|++.+++ +- .
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR-DV~fsp~~~~~-F~s~~dsG~lqlWDlRqp~r~~ 213 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR-DVKFSPGYGNK-FASIHDSGYLQLWDLRQPDRCE 213 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh-ceeeccCCCce-EEEecCCceEEEeeccCchhHH
Confidence 45677887 34666666 7888888873 222333323344556 7778764 555 66666667666542 22 2
Q ss_pred EEEEeccCCccccCCccEEEcCCCcEEEE
Q 030675 82 TVLVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
..+... . .-..-+..+|++.++.|
T Consensus 214 ~k~~AH-~----GpV~c~nwhPnr~~lAT 237 (839)
T KOG0269|consen 214 KKLTAH-N----GPVLCLNWHPNREWLAT 237 (839)
T ss_pred HHhhcc-c----CceEEEeecCCCceeee
Confidence 222211 1 12345677886655554
No 338
>smart00284 OLF Olfactomedin-like domains.
Probab=75.56 E-value=31 Score=25.80 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCCEEEEc-CCCeEEEEcCCCc-EE--EeccccC------------ccccceEEccCCcEEEEEe-CCCe-E--EEEccC
Q 030675 20 NGVLYTAT-GDGWIKRMHPNGT-WE--DWHQVGS------------QSLLGLTTTKENNVIIVCD-SQQG-L--LKVSEE 79 (173)
Q Consensus 20 ~g~l~~~~-~~~~i~~~~~~g~-~~--~~~~~~~------------~p~~gl~~~~~g~l~~v~~-~~~~-i--~~~~~~ 79 (173)
+|.||+-- ....|.|+|...+ .. ...+..+ .-. .+++|..|-.++.+. ...+ | -++++.
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~GLWvIYat~~~~g~ivvSkLnp~ 161 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENGLWVIYATEQNAGKIVISKLNPA 161 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCceEEEEeccCCCCCEEEEeeCcc
Confidence 57777644 4467999996543 32 2111110 013 566666663322222 2223 2 245554
Q ss_pred C---cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceE-EEEcCCCCeeEEeeccccCc-
Q 030675 80 G---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVL-LKYDPSTNQTSLVLDGLYFA- 154 (173)
Q Consensus 80 g---~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~d~~~~~~~~~~~~~~~p- 154 (173)
- .+.+...+.. + ..-+.+.+. |.||+++... ....+| +.||..+++-..+.-.+..+
T Consensus 162 tL~ve~tW~T~~~k-~-sa~naFmvC--GvLY~~~s~~--------------~~~~~I~yayDt~t~~~~~~~i~f~n~y 223 (255)
T smart00284 162 TLTIENTWITTYNK-R-SASNAFMIC--GILYVTRSLG--------------SKGEKVFYAYDTNTGKEGHLDIPFENMY 223 (255)
T ss_pred cceEEEEEEcCCCc-c-cccccEEEe--eEEEEEccCC--------------CCCcEEEEEEECCCCccceeeeeecccc
Confidence 3 2333332221 1 223445554 6789986421 112244 67888876544333333333
Q ss_pred ---ceEEEccCCCEEEEEec
Q 030675 155 ---NGVALSEDERFLVVCES 171 (173)
Q Consensus 155 ---~gi~~~~dg~~lyv~~~ 171 (173)
..|..+|..+.||+=|-
T Consensus 224 ~~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 224 EYISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred ccceeceeCCCCCeEEEEeC
Confidence 34888998888998553
No 339
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=75.51 E-value=43 Score=28.09 Aligned_cols=102 Identities=11% Similarity=0.149 Sum_probs=54.0
Q ss_pred cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEEeccc--cCccccceEEcc--CCcEEEEEeCCCeEEE-Ec
Q 030675 5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWEDWHQV--GSQSLLGLTTTK--ENNVIIVCDSQQGLLK-VS 77 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~--~~~p~~gl~~~~--~g~l~~v~~~~~~i~~-~~ 77 (173)
..|--....+|.|..+|.+.++. .+-++..||+-. +....... ....- ...|-| +.++ +++..++..++ +|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIF-svKFvP~tnnri-v~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIF-SVKFVPYTNNRI-VLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccccee-EEeeeccCCCeE-EEeccCcceEEEEe
Confidence 33434456789999999998877 677899998642 32222111 22333 444444 3355 66655544333 33
Q ss_pred cC---------C-cEEEEeccCCccccCCccEEEcCCC-cEEEE
Q 030675 78 EE---------G-VTVLVSQFNGSQLRFANDVIEASDG-SLYFT 110 (173)
Q Consensus 78 ~~---------g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~ 110 (173)
.+ | .++.. .-.-...+.-.|+..|+| +.+++
T Consensus 124 l~~~~~~~~d~~~~~~~~--~~~cht~rVKria~~p~~Phtfws 165 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTR--CWSCHTDRVKRIATAPNGPHTFWS 165 (758)
T ss_pred cccccccccccCccchhh--hhhhhhhhhhheecCCCCCceEEE
Confidence 22 1 11110 001112456678888888 65554
No 340
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=74.90 E-value=35 Score=26.09 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=51.0
Q ss_pred cccceEEccCCcEEEEEeCC-CeEEEEc-cCC-cEEEEecc-------CCccccCCccEEEc----CCCcEEEEeCcCCc
Q 030675 51 SLLGLTTTKENNVIIVCDSQ-QGLLKVS-EEG-VTVLVSQF-------NGSQLRFANDVIEA----SDGSLYFTVSSTKF 116 (173)
Q Consensus 51 p~~gl~~~~~g~l~~v~~~~-~~i~~~~-~~g-~~~~~~~~-------~~~~~~~~~~l~~~----~dG~~~v~~~~~~~ 116 (173)
.+ .+..+.+|++ +++... +.|++++ .+| +....... .+..+.+-++..+. +++.|-+-|+....
T Consensus 146 iN-sV~~~~~G~y-LiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~ 223 (299)
T PF14269_consen 146 IN-SVDKDDDGDY-LISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSD 223 (299)
T ss_pred ee-eeeecCCccE-EEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCC
Confidence 45 7777889999 566554 6789999 477 44333221 11224555667776 66777676653110
Q ss_pred CcccceeeecccCCCceEEEEcCCCCeeEEe
Q 030675 117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV 147 (173)
Q Consensus 117 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 147 (173)
. .-.....+.++.+|+.+..+..+
T Consensus 224 ~-------~~~~~s~~~v~~ld~~~~~~~~~ 247 (299)
T PF14269_consen 224 F-------NGTEPSRGLVLELDPETMTVTLV 247 (299)
T ss_pred C-------CCCcCCCceEEEEECCCCEEEEE
Confidence 0 01123456888888876555443
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=74.78 E-value=38 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEEEEec
Q 030675 131 HGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCES 171 (173)
Q Consensus 131 ~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~lyv~~~ 171 (173)
...|+.++.+++.++.+..+--.. .-+.++++++.||++-+
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTAN 300 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEES
T ss_pred CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEec
Confidence 368999999988777666553333 34777888888887643
No 342
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.56 E-value=29 Score=27.30 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=27.0
Q ss_pred CCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 21 GVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 21 g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
.++.++. .+..|..||. +|+.. .......... ++.|+ +|-+ +.|.....+...+.
T Consensus 247 ~rviisGSSDsTvrvWDv~tge~l~tlihHceaVL-hlrf~-ng~m-vtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 247 ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVL-HLRFS-NGYM-VTCSKDRSIAVWDM 304 (499)
T ss_pred ceEEEecCCCceEEEEeccCCchhhHHhhhcceeE-EEEEe-CCEE-EEecCCceeEEEec
Confidence 3344444 4555666663 34322 2233445566 88884 4333 55554444544443
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.80 E-value=47 Score=27.03 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEEEe
Q 030675 10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS 86 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~~~ 86 (173)
..|..+..+|+|+..+...+|.-..+...+-..+ ..+... ..+|...+++ .+.+....+..+. -++ ...+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~~G~g~-~~vw~~~n~y-Av~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---AFGSGL-SFVWSSRNRY-AVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---EEEE-S-EEEE-TSSEE-EEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---ccCcee-EEEEecCccE-EEEECCCeEEEEEcCccccceEEcC
Confidence 4588999999887664444444444432222111 123344 6778777666 5555443333322 122 122211
Q ss_pred ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEE
Q 030675 87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL 166 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~l 166 (173)
. ..+..|-- |.++.... ++.|..||-+++++..-.. ......+.|+++|+.+
T Consensus 108 ~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 108 P------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRID-VSAVKYVIWSDDGELV 159 (443)
T ss_dssp S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEE
T ss_pred C------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEE
Confidence 1 12233332 66544421 2468888887665433333 2224789999998866
Q ss_pred EEE
Q 030675 167 VVC 169 (173)
Q Consensus 167 yv~ 169 (173)
.+.
T Consensus 160 al~ 162 (443)
T PF04053_consen 160 ALV 162 (443)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 344
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=40 Score=26.03 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=42.7
Q ss_pred CEEEEcCCCeEEEEcCCC-c---EE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCcccc
Q 030675 22 VLYTATGDGWIKRMHPNG-T---WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLR 94 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g-~---~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~ 94 (173)
..||++.+..+..+|... + +. +.....+..+ .++++ |+..|++....++..+|- +- .-.+....+-.+
T Consensus 140 ~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~-~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-- 214 (370)
T COG5276 140 YAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH-DVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-- 214 (370)
T ss_pred EEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce-eEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--
Confidence 577777444455555321 1 11 1112222234 45554 445599988888998884 32 333332222111
Q ss_pred CCccEEEcCCCcEEEEeCc
Q 030675 95 FANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 95 ~~~~l~~~~dG~~~v~~~~ 113 (173)
....+.+.+ .+.|+++..
T Consensus 215 g~~sv~vsd-nr~y~vvy~ 232 (370)
T COG5276 215 GTYSVSVSD-NRAYLVVYD 232 (370)
T ss_pred ceEEEEecC-CeeEEEEcc
Confidence 334455553 367777643
No 345
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=72.85 E-value=56 Score=28.50 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=31.4
Q ss_pred cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc----cCcceEEEccCCC
Q 030675 94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL----YFANGVALSEDER 164 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~p~gi~~~~dg~ 164 (173)
.-..+|+++|.-.+.++-- .+..|-.|+.++|+......+- .-+--+.++|.|-
T Consensus 597 tTlYDm~Vdp~~k~v~t~c-----------------QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi 654 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVC-----------------QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI 654 (1080)
T ss_pred ceEEEeeeCCCcceEEEEe-----------------cccceEEEeccccceeeeecccccCCCceEEEEECCCcc
Confidence 3568899999876555421 2245666677666655554442 2233466677763
No 346
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.98 E-value=43 Score=25.80 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=45.7
Q ss_pred CccccceEEccCCcEEEEEeCCCeEEEEc---cCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccce
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYY 122 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~---~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~ 122 (173)
.... .|+|+|.-..++.|....+.+|+. .+| .........+ -+-+++...||. +|.+.
T Consensus 28 DsIS-~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~----PvL~v~WsddgskVf~g~----------- 91 (347)
T KOG0647|consen 28 DSIS-ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG----PVLDVCWSDDGSKVFSGG----------- 91 (347)
T ss_pred cchh-eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC----CeEEEEEccCCceEEeec-----------
Confidence 3455 899999544436566666555554 345 2211111222 346788999997 44442
Q ss_pred eeecccCCCceEEEEcCCCCeeEEeecc
Q 030675 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDG 150 (173)
Q Consensus 123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 150 (173)
.++.+-.+|..++++..+...
T Consensus 92 -------~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 92 -------CDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred -------cCCceEEEEccCCCeeeeeec
Confidence 235677777777777666543
No 347
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=71.81 E-value=10 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=34.6
Q ss_pred CCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-EeeccccCcceEEEccCCC
Q 030675 95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFANGVALSEDER 164 (173)
Q Consensus 95 ~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~p~gi~~~~dg~ 164 (173)
..+++.+-||++|+.|.+..+ ..+||.+- +.++- ++...-...|.++|+||-.
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~---------------RiRVyswr--tl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDH---------------RIRVYSWR--TLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred CccceEEccCCcEEeecccCC---------------cEEEEEec--cCCchhhhhhhhcceeEEEeCCCCc
Confidence 568899999999999864411 13555554 34433 3333456778999999843
No 348
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=69.44 E-value=62 Score=26.56 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=41.4
Q ss_pred CCCEEEEcC-----CCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEeccCCccc
Q 030675 20 NGVLYTATG-----DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQL 93 (173)
Q Consensus 20 ~g~l~~~~~-----~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~ 93 (173)
...||+... ....+.+|.+|.++-...........+...++|++ ++... ..+..+|..| ...... +++...
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~l-l~~~~-~~~~e~D~~G~v~~~~~-l~~~~~ 189 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNL-LIGSG-NRLYEIDLLGKVIWEYD-LPGGYY 189 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-E-EEEEB-TEEEEE-TT--EEEEEE---TTEE
T ss_pred CCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCE-EEecC-CceEEEcCCCCEEEeee-cCCccc
Confidence 345665442 45678888888765332222222202567799999 54433 6788888888 332222 222111
Q ss_pred cCCccEEEcCCCcEEEE
Q 030675 94 RFANDVIEASDGSLYFT 110 (173)
Q Consensus 94 ~~~~~l~~~~dG~~~v~ 110 (173)
..=+++...|+|++++.
T Consensus 190 ~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLIL 206 (477)
T ss_dssp -B-S-EEE-TTS-EEEE
T ss_pred ccccccEECCCCCEEEE
Confidence 23488999999986554
No 349
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=69.28 E-value=45 Score=25.66 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=21.4
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEccC
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEE 79 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~ 79 (173)
..+ ++.+.|+++. .++...+.|..++.+
T Consensus 125 ~i~-cvew~Pns~k-lasm~dn~i~l~~l~ 152 (370)
T KOG1007|consen 125 KIN-CVEWEPNSDK-LASMDDNNIVLWSLD 152 (370)
T ss_pred cee-eEEEcCCCCe-eEEeccCceEEEEcc
Confidence 456 8999999988 777777778877743
No 350
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=67.55 E-value=52 Score=24.97 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=37.8
Q ss_pred eEEEcCCCCEEEEcCCCeEEEEc-CCC------cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 14 DVSVDGNGVLYTATGDGWIKRMH-PNG------TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 14 ~l~~~~~g~l~~~~~~~~i~~~~-~~g------~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
.++..++|++.+.-.+..|.... .|. +...-.+....=. =+++++|+.+|..+.....|..+|--|
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWR-kl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWR-KLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchhe-EEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 35677789988766666665443 232 2222112222224 588999999966665544455555555
No 351
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=66.37 E-value=52 Score=24.52 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=24.8
Q ss_pred EEEEcCCCCeeEEeeccc----cCcceEEEccCCCEEEEEec
Q 030675 134 LLKYDPSTNQTSLVLDGL----YFANGVALSEDERFLVVCES 171 (173)
Q Consensus 134 v~~~d~~~~~~~~~~~~~----~~p~gi~~~~dg~~lyv~~~ 171 (173)
-+.||..+++...+.-.+ ....-|..+|..+.||+=|.
T Consensus 197 ~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 197 FYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred EEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC
Confidence 367888876554443333 33356888998888998654
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.44 E-value=43 Score=27.99 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=43.6
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
=.|.+...+|.+.++..+|.|.-+|..|+..+ ..+..+.|..++.+..+|+. ++|.-...++.++
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKw-il~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKW-ILATCKTYLLLID 498 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcE-EEEecccEEEEEE
Confidence 35667777899999888888888886554332 22333433338889999998 6665555566665
No 353
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=65.04 E-value=82 Score=26.32 Aligned_cols=109 Identities=10% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCeEEEEc-CCCcEEEeccccC---ccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEE
Q 030675 28 GDGWIKRMH-PNGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVI 100 (173)
Q Consensus 28 ~~~~i~~~~-~~g~~~~~~~~~~---~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~ 100 (173)
..|.|+-++ ..|++........ ..+ .+..+.+-..+|-+.....+..++. ++ ...+-. ++ ..+..+.
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~--~~~~sl~ 151 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QK--PLVSSLC 151 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeeecc---CC--CccceEE
Confidence 556666666 3455544333222 222 3333333233365554445555554 33 222211 11 3677899
Q ss_pred EcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEcc
Q 030675 101 EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSE 161 (173)
Q Consensus 101 ~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~ 161 (173)
+.|||.+..+- ++.|-.+|.+++++-.-.++...| +.++|..
T Consensus 152 is~D~~~l~~a-------------------s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~ 194 (541)
T KOG4547|consen 152 ISPDGKILLTA-------------------SRQIKVLDIETKEVVITFTGHGSPVRTLSFTT 194 (541)
T ss_pred EcCCCCEEEec-------------------cceEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence 99999887763 257777888777765555554444 4455543
No 354
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.57 E-value=22 Score=31.91 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=51.2
Q ss_pred cceEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEEecc----ccCccccceEEccCCcEEEEEeCCC-eEEEEccCCcEEE
Q 030675 12 PEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDWHQ----VGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEGVTVL 84 (173)
Q Consensus 12 p~~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~~~~----~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g~~~~ 84 (173)
..+|-|.+. +++..+. .+|.|+.||...--..+.. ...... .|+++.+=..++.+...+ .+..+|....+.+
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~-~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK-CLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce-EeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 356778884 4577655 7788999986442222211 223345 666665533313333333 3444443321222
Q ss_pred EeccCCccccCCccEEEcCCC--cEEEEeC
Q 030675 85 VSQFNGSQLRFANDVIEASDG--SLYFTVS 112 (173)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~dG--~~~v~~~ 112 (173)
....+...-...+.++.+|++ .++++..
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecC
Confidence 221111111356789999998 3666643
No 355
>PRK10115 protease 2; Provisional
Probab=64.44 E-value=27 Score=30.08 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=36.5
Q ss_pred cCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeeccccCcceEEEccCCCEEEEEe
Q 030675 94 RFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 94 ~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~p~gi~~~~dg~~lyv~~ 170 (173)
-...++.++|||++ .++... . +...-.|+.+|..+|+. +.+ .+.. .+++|++|++.+|++-
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~--~-----------G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~ 190 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDF--L-----------SRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVR 190 (686)
T ss_pred EEEeEEEECCCCCEEEEEecC--C-----------CcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEE
Confidence 34567788899973 333111 1 12234788889887752 211 1112 4699999999888764
No 356
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=64.16 E-value=75 Score=25.56 Aligned_cols=98 Identities=9% Similarity=0.002 Sum_probs=47.7
Q ss_pred CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC----cE---EEec--cccCccccceEEccCCcEEEEEeCCCeEEEEccC
Q 030675 10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG----TW---EDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE 79 (173)
Q Consensus 10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g----~~---~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~ 79 (173)
.....|.|..++...++. .+-++..|+.+- +. ..+. ......- +|+|+...+.+|-......++..+..
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF-~L~F~~~N~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIF-SLEFDLENRFLYSGERWGTVIKHDIE 135 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceE-EEEEccCCeeEecCCCcceeEeeecc
Confidence 345667888887777666 333344444222 11 1111 1123456 78888776664544444456666643
Q ss_pred C-cEE-EEeccCCccccCCccEEEcCCCcEEEE
Q 030675 80 G-VTV-LVSQFNGSQLRFANDVIEASDGSLYFT 110 (173)
Q Consensus 80 g-~~~-~~~~~~~~~~~~~~~l~~~~dG~~~v~ 110 (173)
. .+. ++..-+. -.-..+|..+|-.+++++
T Consensus 136 t~qsi~V~~~~~~--~~~VY~m~~~P~DN~~~~ 166 (609)
T KOG4227|consen 136 TKQSIYVANENNN--RGDVYHMDQHPTDNTLIV 166 (609)
T ss_pred cceeeeeecccCc--ccceeecccCCCCceEEE
Confidence 2 221 1211111 123556777774444444
No 357
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=63.97 E-value=63 Score=24.64 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=14.9
Q ss_pred ceEEccCCcEEEEEeCC-CeEEEEc
Q 030675 54 GLTTTKENNVIIVCDSQ-QGLLKVS 77 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~-~~i~~~~ 77 (173)
.+++++|+++ .++-.. ..+++.-
T Consensus 163 s~~~snd~~~-~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 163 SLHYSNDPSW-GSSVGDSRRVFRYA 186 (344)
T ss_pred eeEEcCCCce-EEEecCCCcceEEE
Confidence 7888999988 444333 4565544
No 358
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=62.47 E-value=83 Score=26.53 Aligned_cols=95 Identities=12% Similarity=-0.031 Sum_probs=51.2
Q ss_pred eEEEcCCCCEEEE--c--CCC--eEEEEcCCCc-EEEeccc-cCccccceEEccCCcEEEEEeCC---CeEEEEccCC--
Q 030675 14 DVSVDGNGVLYTA--T--GDG--WIKRMHPNGT-WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG-- 80 (173)
Q Consensus 14 ~l~~~~~g~l~~~--~--~~~--~i~~~~~~g~-~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g-- 80 (173)
..+|+|.|.=|+. . ... +.|.....++ ...+... -...+ .+-++|.|++++++... ..+..+|.+-
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N-~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFAN-TVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccc-eEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 4688897754422 2 122 3344432222 2111111 13456 89999999996666533 2366666442
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
...... .+ ....+.+..||.|+.++|..+
T Consensus 529 ~k~~~~-~e---h~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 529 LKDTAS-PE---HFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhccC-cc---ccccccceECCCCCEEEEeee
Confidence 222111 11 124688999999998887543
No 359
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.45 E-value=69 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=30.8
Q ss_pred CcceEEEcCC--CCEEEEcCCCeEEEEcC---CCcEEEeccccCccccceEEccC-CcEEEEEeCCCeEEEEc
Q 030675 11 HPEDVSVDGN--GVLYTATGDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 11 ~p~~l~~~~~--g~l~~~~~~~~i~~~~~---~g~~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~ 77 (173)
+..+|+|.++ ..++++..+|.+..+|. .+-+..+.+...... .+-++.. ++. +++...++.+++.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~-Svdwn~~~r~~-~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY-SVDWNTVRRRI-FLTSSWDGTIKLW 132 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE-Eecccccccee-EEeeccCCceEee
Confidence 4456777763 34555556777766662 222233333333334 4444432 333 4444444555444
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.14 E-value=43 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=22.3
Q ss_pred CcceEEEcCCC-CEEEEcCCCeEEEEcCCC
Q 030675 11 HPEDVSVDGNG-VLYTATGDGWIKRMHPNG 39 (173)
Q Consensus 11 ~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g 39 (173)
...+++|++++ ++|.+|..|+|.....+-
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEEech
Confidence 45689999988 799999888887554443
No 361
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=60.60 E-value=1.3e+02 Score=27.18 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=41.6
Q ss_pred cceEEEcCCC-CEEEEcCCCeEEEE----cCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 12 PEDVSVDGNG-VLYTATGDGWIKRM----HPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~~~~~i~~~----~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
.-++.+-++. .+++.-.+|.|..+ +.+. .++.+........ +++++||+.+|.++...+.++.+.
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-AASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE-EEEECCCcCEEEEEeCCCEEEEEe
Confidence 4445555544 57766677888877 4433 3444434444566 899999999977776565666664
No 362
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=60.25 E-value=1.1e+02 Score=26.37 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=54.4
Q ss_pred CccccceEEccCCcEEEEEeCCCeEEEEcc---CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCccccee
Q 030675 49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL 123 (173)
Q Consensus 49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~ 123 (173)
.+.+ ++-+.+.+..|..+...+.++...+ .| +..+.-...+......-+..+.|+++++++....
T Consensus 268 DWV~-sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--------- 337 (764)
T KOG1063|consen 268 DWVY-SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--------- 337 (764)
T ss_pred cceE-EEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---------
Confidence 3567 8888888744244433333333333 34 2222222222222345667788888888875331
Q ss_pred eecccCCCceEEEEcCCCC--eeEEeecc-ccCcceEEEccCCCEEEEE
Q 030675 124 DLVSGEPHGVLLKYDPSTN--QTSLVLDG-LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 124 ~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~p~gi~~~~dg~~lyv~ 169 (173)
..-++|+ +.+.. ..+.+..+ +....+++|+|.|++|.-+
T Consensus 338 ------Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 338 ------GGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred ------CcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEe
Confidence 1124444 22212 22333333 6677889999999976543
No 363
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=60.18 E-value=73 Score=24.16 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.2
Q ss_pred CcceEEEcC-CCCEEEEcCCCeEEEEcC
Q 030675 11 HPEDVSVDG-NGVLYTATGDGWIKRMHP 37 (173)
Q Consensus 11 ~p~~l~~~~-~g~l~~~~~~~~i~~~~~ 37 (173)
+.||+..|. .|.||++..+-.||++..
T Consensus 206 QTEG~VaDdEtG~LYIaeEdvaiWK~~A 233 (364)
T COG4247 206 QTEGMVADDETGFLYIAEEDVAIWKYEA 233 (364)
T ss_pred cccceeeccccceEEEeeccceeeeccc
Confidence 567888776 689999998888999974
No 364
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.99 E-value=1.2e+02 Score=26.44 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=47.5
Q ss_pred ceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccC----ccccceEEccCC-----cEEEEEeCCCeEEEEccCC--
Q 030675 13 EDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGS----QSLLGLTTTKEN-----NVIIVCDSQQGLLKVSEEG-- 80 (173)
Q Consensus 13 ~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~----~p~~gl~~~~~g-----~l~~v~~~~~~i~~~~~~g-- 80 (173)
-+-+|..||.+++-. .+|.|...+..|+-....+.++ ... +++++|.. +++-|.++.+.+-...-+|
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw-si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW-SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce-EEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 355677788766444 7888877777665433333322 234 77777532 3435566554443333454
Q ss_pred cEEEEeccCCccccCCccEEEcCCCcEEE
Q 030675 81 VTVLVSQFNGSQLRFANDVIEASDGSLYF 109 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v 109 (173)
...-. ... --|.-+..-++|....
T Consensus 215 Igk~r-~L~----FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 215 IGKDR-ALN----FDPCCISYFTNGEYIL 238 (1081)
T ss_pred ecccc-cCC----CCchhheeccCCcEEE
Confidence 11110 010 1356666677886433
No 365
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=59.59 E-value=21 Score=17.70 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=16.6
Q ss_pred CCCEEEEc------CCCeEEEEcCCCcEEE
Q 030675 20 NGVLYTAT------GDGWIKRMHPNGTWED 43 (173)
Q Consensus 20 ~g~l~~~~------~~~~i~~~~~~g~~~~ 43 (173)
+|.||.+. ..|.|+|++++|....
T Consensus 1 dg~lYGTT~~GG~~~~GTvf~~~~~g~~t~ 30 (34)
T TIGR03803 1 GGTLYGTTSGGGASGFGTLYRLSTAGGTTV 30 (34)
T ss_pred CCcEEEEcccCCCCCceeEEEEcCCCCeEE
Confidence 46788554 3467999998887643
No 366
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=58.30 E-value=80 Score=24.01 Aligned_cols=56 Identities=5% Similarity=0.093 Sum_probs=31.8
Q ss_pred ceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEec-cCCccccCCccEEEcCCCcEEEEe
Q 030675 54 GLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQ-FNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
.++...+|++|.+.. . .++.+. .|. ...+... +...+...-.-++.+||+.+++-.
T Consensus 2 ~~~~~~~Gk~lAi~q-d-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-D-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEe-c-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE
Confidence 367789999844442 3 344444 354 2222221 222333455779999999877754
No 367
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=57.22 E-value=1e+02 Score=24.85 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=16.7
Q ss_pred cccCccccceEEccCCcEEEEEeCCC
Q 030675 46 QVGSQSLLGLTTTKENNVIIVCDSQQ 71 (173)
Q Consensus 46 ~~~~~p~~gl~~~~~g~l~~v~~~~~ 71 (173)
...+..+ .|.|+.+++. +++....
T Consensus 54 ~H~GCiN-AlqFS~N~~~-L~SGGDD 77 (609)
T KOG4227|consen 54 EHTGCIN-ALQFSHNDRF-LASGGDD 77 (609)
T ss_pred hhccccc-eeeeccCCeE-EeecCCc
Confidence 3455677 9999999887 6665443
No 368
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.60 E-value=29 Score=28.45 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=12.3
Q ss_pred ccCcceEEEccCCCEEEEEe
Q 030675 151 LYFANGVALSEDERFLVVCE 170 (173)
Q Consensus 151 ~~~p~gi~~~~dg~~lyv~~ 170 (173)
...|.-+++||.+.+|.+-+
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred hcCcceeeeCcccchheeec
Confidence 44566677777766665543
No 369
>PRK13613 lipoprotein LpqB; Provisional
Probab=55.14 E-value=1.3e+02 Score=25.60 Aligned_cols=97 Identities=13% Similarity=0.203 Sum_probs=51.8
Q ss_pred cceEEEcCCCCEEEEcC--C-CeEEE-EcCCCcEEEecc--ccC-ccccceEEccCC-cEEEEEeCCC--e--EEEE--c
Q 030675 12 PEDVSVDGNGVLYTATG--D-GWIKR-MHPNGTWEDWHQ--VGS-QSLLGLTTTKEN-NVIIVCDSQQ--G--LLKV--S 77 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~--~-~~i~~-~~~~g~~~~~~~--~~~-~p~~gl~~~~~g-~l~~v~~~~~--~--i~~~--~ 77 (173)
.....||.+|.+|+.+. . .++.+ ...+|+...+.. ..+ ... .+.+++|| |.+++.+... . +-.+ +
T Consensus 411 Lt~PS~d~~g~vWtvd~~~~~~~vl~v~~~~G~~~~V~~~~l~g~~I~-~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~ 489 (599)
T PRK13613 411 LTSPSWDGRGDLWVVDRDPADPRLLWLLQGDGEPVEVRTPELDGHRVV-AVRVARDGVRVALIVEKDGRRSLQIGRIVRD 489 (599)
T ss_pred ccCCcCcCCCCEEEecCCCCCceEEEEEcCCCcEEEeeccccCCCEeE-EEEECCCccEEEEEEecCCCcEEEEEEEEeC
Confidence 34456788889998763 2 23444 445666543321 122 455 88999998 5555555321 1 2222 3
Q ss_pred cCCcEEEEecc-CCccccCCccEEEcCCCcEEE
Q 030675 78 EEGVTVLVSQF-NGSQLRFANDVIEASDGSLYF 109 (173)
Q Consensus 78 ~~g~~~~~~~~-~~~~~~~~~~l~~~~dG~~~v 109 (173)
.+|...+.... -+.....+.+++...++.|.+
T Consensus 490 ~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~V 522 (599)
T PRK13613 490 AKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVV 522 (599)
T ss_pred CCCcEEeeccEEeccCCCccceeEEcCCCEEEE
Confidence 35532222211 011123467888888888777
No 370
>PHA02790 Kelch-like protein; Provisional
Probab=54.63 E-value=1.2e+02 Score=24.87 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCEEEEcC---CCeEEEEcC-CCcEEEecccc-CccccceEEccCCcEEEEEeCCC----eEEEEcc
Q 030675 20 NGVLYTATG---DGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQ----GLLKVSE 78 (173)
Q Consensus 20 ~g~l~~~~~---~~~i~~~~~-~g~~~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~~----~i~~~~~ 78 (173)
+|.||+... ...+.++++ .++|....+-. .... ..+..-+|++ |+..... .+.+.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~~g~I-YviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASINNVI-YVIGGHSETDTTTEYLLP 383 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEECCEE-EEecCcCCCCccEEEEeC
Confidence 788997652 245788885 45676653322 1112 2222356777 8875432 2445565
No 371
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=54.10 E-value=1.4e+02 Score=25.77 Aligned_cols=81 Identities=11% Similarity=0.107 Sum_probs=39.9
Q ss_pred CcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcC
Q 030675 61 NNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP 139 (173)
Q Consensus 61 g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 139 (173)
|+++|+|...+.++-+|. +|.+...=...-+.-..+-.. .=+|--|..+.. ....++.+.+.-...+.+|.-+|.
T Consensus 214 gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~--tCrgVsy~~a~a--~~k~pc~~rIflpt~DarlIALdA 289 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQ--TCRGVSYGAAKA--DAKSPCPRRIFLPTADARLIALDA 289 (773)
T ss_pred CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccc--cccceecccccc--cccCCCceeEEeecCCceEEEEeC
Confidence 345699998889999995 673333211110000011111 112321222111 001233444555567789999999
Q ss_pred CCCeeE
Q 030675 140 STNQTS 145 (173)
Q Consensus 140 ~~~~~~ 145 (173)
++|++.
T Consensus 290 ~tGkvc 295 (773)
T COG4993 290 DTGKVC 295 (773)
T ss_pred CCCcEe
Confidence 988753
No 372
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=53.95 E-value=63 Score=25.77 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=42.4
Q ss_pred cCCcceEEEcCC-CCEEEEc-CCCeEEEEcC-CC---cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 9 VNHPEDVSVDGN-GVLYTAT-GDGWIKRMHP-NG---TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 9 ~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~-~g---~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
-...|+|+|+|. ..+|++. .++.|..||. .+ .........+..+ -|.++.+-.+ +++...+|.+++.
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN-VISWnr~~~l-LasG~DdGt~~iw 329 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN-VISWNRREPL-LASGGDDGTLSIW 329 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee-eEEccCCcce-eeecCCCceEEEE
Confidence 456789999994 4666555 8888988883 33 2222334445667 7778776555 5555556666655
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.44 E-value=72 Score=29.36 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030675 130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171 (173)
Q Consensus 130 ~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~ 171 (173)
..|.|..+|+++...+.+...-.....++||||++.+.++..
T Consensus 88 ~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 88 ALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred cCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 347888889988777666655566677899999987776643
No 374
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.98 E-value=35 Score=29.46 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=47.5
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccc-cCccccceEEccCCcEEEEEeCCCe---EEEEccCC-cEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQG---LLKVSEEG-VTV 83 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~---i~~~~~~g-~~~ 83 (173)
..++|.++....|..+. ..|.|..||.. ++..+-..+ ...+. .+.|+|=+.+ +......+ ++-+...| ...
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEE-eccccccccceehhhhccCceee
Confidence 35678888877777555 66777788853 333321111 12233 5666676654 31111122 22222355 333
Q ss_pred EEeccCCccccCCccEEEcCCCcEEE
Q 030675 84 LVSQFNGSQLRFANDVIEASDGSLYF 109 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~dG~~~v 109 (173)
+... -...+-+++.|+|++.+
T Consensus 150 ~~s~-----~~vv~~l~lsP~Gr~v~ 170 (825)
T KOG0267|consen 150 YKSH-----TRVVDVLRLSPDGRWVA 170 (825)
T ss_pred ecCC-----cceeEEEeecCCCceee
Confidence 3221 13457789999997544
No 375
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.46 E-value=1.2e+02 Score=24.33 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.4
Q ss_pred ceEEEccCCCEEEEE
Q 030675 155 NGVALSEDERFLVVC 169 (173)
Q Consensus 155 ~gi~~~~dg~~lyv~ 169 (173)
.||+++||+++||-.
T Consensus 203 Eglait~d~~~L~~~ 217 (391)
T COG4222 203 EGLAITPDGKKLYAL 217 (391)
T ss_pred eeEEecCCCceEEEE
Confidence 479999999988864
No 376
>PHA02713 hypothetical protein; Provisional
Probab=51.50 E-value=1.5e+02 Score=24.97 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCCEEEEc-CC-----CeEEEEcC-CCcEEEeccccC--ccccceEEccCCcEEEEEeC
Q 030675 20 NGVLYTAT-GD-----GWIKRMHP-NGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDS 69 (173)
Q Consensus 20 ~g~l~~~~-~~-----~~i~~~~~-~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~ 69 (173)
+|.||+.. .+ ..+.++|+ +++|....+-.. .-. +.+. -+|++ |+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~-~~g~I-YviGG 406 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCV-LDQYI-YIIGG 406 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEE-ECCEE-EEEeC
Confidence 78899655 22 23778886 456766533211 112 3332 46677 88653
No 377
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=51.49 E-value=1.4e+02 Score=26.38 Aligned_cols=20 Identities=10% Similarity=0.509 Sum_probs=15.7
Q ss_pred CCcEEEEEeCCCeEEEEcc-CC
Q 030675 60 ENNVIIVCDSQQGLLKVSE-EG 80 (173)
Q Consensus 60 ~g~l~~v~~~~~~i~~~~~-~g 80 (173)
++.+ |+|...+.++.+|. +|
T Consensus 194 gg~l-Yv~t~~~~V~ALDa~TG 214 (764)
T TIGR03074 194 GDTL-YLCTPHNKVIALDAATG 214 (764)
T ss_pred CCEE-EEECCCCeEEEEECCCC
Confidence 5566 99987778999995 67
No 378
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.54 E-value=1.6e+02 Score=25.29 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=61.1
Q ss_pred CcceEEE-cCCCCEEEEc-CCCeEEEEcCC-Cc--E-EEec-----cc----cCccccceEEccCCcEEEEEeCCCeEEE
Q 030675 11 HPEDVSV-DGNGVLYTAT-GDGWIKRMHPN-GT--W-EDWH-----QV----GSQSLLGLTTTKENNVIIVCDSQQGLLK 75 (173)
Q Consensus 11 ~p~~l~~-~~~g~l~~~~-~~~~i~~~~~~-g~--~-~~~~-----~~----~~~p~~gl~~~~~g~l~~v~~~~~~i~~ 75 (173)
...+|+. .++..++++. -+++|+.||.+ |. . ..+. .. -...+ .++.++.|.+ +++....++++
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~-ivsGgtek~lr 196 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTI-IVSGGTEKDLR 196 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceE-EEecCcccceE
Confidence 4456777 5577788777 67889988843 31 1 1111 11 12346 7888888866 66655555555
Q ss_pred Ec-c-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030675 76 VS-E-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS 140 (173)
Q Consensus 76 ~~-~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 140 (173)
++ + .+ .-.+...- .....+.+++||+-.++. +.+|.|-.+|..
T Consensus 197 ~wDprt~~kimkLrGHT-----dNVr~ll~~dDGt~~ls~-----------------sSDgtIrlWdLg 243 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHT-----DNVRVLLVNDDGTRLLSA-----------------SSDGTIRLWDLG 243 (735)
T ss_pred Eeccccccceeeeeccc-----cceEEEEEcCCCCeEeec-----------------CCCceEEeeecc
Confidence 55 3 44 22222111 245678888999766653 345677777764
No 379
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=43 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=18.9
Q ss_pred cccCCccEEEcCCCcEEEEeCc
Q 030675 92 QLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 92 ~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
.|.-|++|.+|.||..|+++.+
T Consensus 465 ~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 465 LFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred ceecCCcceecCCCcEEeeccc
Confidence 4678999999999999999754
No 380
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.96 E-value=1.8e+02 Score=25.13 Aligned_cols=85 Identities=12% Similarity=0.154 Sum_probs=48.1
Q ss_pred EEEEcCCCeEEEEcC-CC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccE
Q 030675 23 LYTATGDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDV 99 (173)
Q Consensus 23 l~~~~~~~~i~~~~~-~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l 99 (173)
+.++..+..|..++- ++ ++..+..+..... .|+++|.-=+ +++...+.+++++. ++.-.....++|.. +..-.+
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~-HyVMqv 146 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHE-HYVMQV 146 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcc-eEEEEE
Confidence 334445555555542 23 4455656666778 8999998766 55655666666653 33111112223321 466778
Q ss_pred EEcCC-CcEEEE
Q 030675 100 IEASD-GSLYFT 110 (173)
Q Consensus 100 ~~~~d-G~~~v~ 110 (173)
++.|+ -+.|++
T Consensus 147 ~fnPkD~ntFaS 158 (794)
T KOG0276|consen 147 AFNPKDPNTFAS 158 (794)
T ss_pred EecCCCccceee
Confidence 99994 456666
No 381
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.96 E-value=1.2e+02 Score=26.34 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=47.1
Q ss_pred CEEEEcCCCeEEEEcCCCcEE-Eecccc--CccccceEEccCCcEEEEEeCCCeEEEEc---cCC--cEEEEeccCCccc
Q 030675 22 VLYTATGDGWIKRMHPNGTWE-DWHQVG--SQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG--VTVLVSQFNGSQL 93 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~~~-~~~~~~--~~p~~gl~~~~~g~l~~v~~~~~~i~~~~---~~g--~~~~~~~~~~~~~ 93 (173)
.+-++...|.+|-++..+... +..... +... -+.++++..+ +++...++.+.+. ... ...+....+..-.
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~l-vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYL-VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHh-hhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 344555667777776544322 221211 1222 4455666555 5554455555544 222 2233333332223
Q ss_pred cCCccEEEcCCCc-EEEEeCc
Q 030675 94 RFANDVIEASDGS-LYFTVSS 113 (173)
Q Consensus 94 ~~~~~l~~~~dG~-~~v~~~~ 113 (173)
.+...+..++||. +|.+|..
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ceEEEEEecccccEEeecCCC
Confidence 5678899999994 8888754
No 382
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=48.41 E-value=28 Score=19.92 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=12.8
Q ss_pred eEEEEcCCCCeeEEe
Q 030675 133 VLLKYDPSTNQTSLV 147 (173)
Q Consensus 133 ~v~~~d~~~~~~~~~ 147 (173)
.||+||++++++.+.
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 899999999887654
No 383
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=48.40 E-value=2.1e+02 Score=25.84 Aligned_cols=45 Identities=11% Similarity=0.008 Sum_probs=26.0
Q ss_pred cCCcEEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcCCCc
Q 030675 59 KENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGS 106 (173)
Q Consensus 59 ~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~ 106 (173)
-.+|++|+.+....+..+|.+| ...........+ .-.-+++|||+
T Consensus 317 f~tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~---i~sP~~SPDG~ 362 (912)
T TIGR02171 317 YKAKLAFRNDVTGNLAYIDYTKGASRAVEIEDTIS---VYHPDISPDGK 362 (912)
T ss_pred ceeeEEEEEcCCCeEEEEecCCCCceEEEecCCCc---eecCcCCCCCC
Confidence 3567878886544788888777 332221222222 22346789996
No 384
>PRK10115 protease 2; Provisional
Probab=47.74 E-value=1.9e+02 Score=25.13 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=50.9
Q ss_pred cccceEEccCCcEEEEEeCCC-----eEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCccccee
Q 030675 51 SLLGLTTTKENNVIIVCDSQQ-----GLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYL 123 (173)
Q Consensus 51 p~~gl~~~~~g~l~~v~~~~~-----~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~ 123 (173)
.. ++.+++||+++.++.... .+..++. +|.. +...+.+. . ..+++.+||. +|++.....
T Consensus 129 l~-~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~~---~-~~~~w~~D~~~~~y~~~~~~-------- 194 (686)
T PRK10115 129 LG-GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-YPELLDNV---E-PSFVWANDSWTFYYVRKHPV-------- 194 (686)
T ss_pred Ee-EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-CCccccCc---c-eEEEEeeCCCEEEEEEecCC--------
Confidence 44 678889998755553322 2555554 4421 11111211 1 4488888875 666532210
Q ss_pred eecccCCCceEEEEcCCCC--eeEEeeccccCcc--eEEEccCCCEEEEE
Q 030675 124 DLVSGEPHGVLLKYDPSTN--QTSLVLDGLYFAN--GVALSEDERFLVVC 169 (173)
Q Consensus 124 ~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~p~--gi~~~~dg~~lyv~ 169 (173)
......||+.+..++ +-+.+......+. ++..+.|++++.+.
T Consensus 195 ----~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~ 240 (686)
T PRK10115 195 ----TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIH 240 (686)
T ss_pred ----CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEE
Confidence 001247888888776 4444444322222 23335577776653
No 385
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=46.85 E-value=1.4e+02 Score=23.37 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred cceEEEcCCC-CEEEEcCCCeEEEEcC--CCcEEE---eccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030675 12 PEDVSVDGNG-VLYTATGDGWIKRMHP--NGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV 76 (173)
Q Consensus 12 p~~l~~~~~g-~l~~~~~~~~i~~~~~--~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~ 76 (173)
-.+|.|.|.. +|..+..+..-|.|.. +|.+.. +...-.... ++.++|+++. ++...+.+++.+
T Consensus 58 vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt-~V~WsP~enk-FAVgSgar~isV 126 (361)
T KOG1523|consen 58 VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAAT-CVKWSPKENK-FAVGSGARLISV 126 (361)
T ss_pred eeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecccee-eEeecCcCce-EEeccCccEEEE
Confidence 4568888865 6666665555666653 444432 222234556 8999999988 655555455444
No 386
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=45.96 E-value=37 Score=17.63 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=16.2
Q ss_pred ceEEccCCcEEEEEeCCCeEEEEcc
Q 030675 54 GLTTTKENNVIIVCDSQQGLLKVSE 78 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~~~i~~~~~ 78 (173)
++.+ .|+++|+++...++..+|-
T Consensus 6 ~v~v--~g~yaYva~~~~Gl~IvDI 28 (42)
T PF08309_consen 6 DVAV--SGNYAYVADGNNGLVIVDI 28 (42)
T ss_pred EEEE--ECCEEEEEeCCCCEEEEEC
Confidence 4444 3456799988788888883
No 387
>PHA02713 hypothetical protein; Provisional
Probab=45.31 E-value=1.9e+02 Score=24.38 Aligned_cols=49 Identities=8% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCCEEEEcC-C------CeEEEEcCC-CcEEEecccc-CccccceEEccCCcEEEEEeCC
Q 030675 20 NGVLYTATG-D------GWIKRMHPN-GTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 20 ~g~l~~~~~-~------~~i~~~~~~-g~~~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
++.||+... + ..++++|+. +.|..+.+-. ....-+++ .-+|++ |+....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~I-YviGG~ 360 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTI-YAIGGQ 360 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEE-EEECCc
Confidence 678887652 1 247888864 4565543211 11120333 346677 887543
No 388
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=44.81 E-value=75 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCe-----eEEeecc---ccCcceEEEccCCCEEEEE
Q 030675 132 GVLLKYDPSTNQ-----TSLVLDG---LYFANGVALSEDERFLVVC 169 (173)
Q Consensus 132 ~~v~~~d~~~~~-----~~~~~~~---~~~p~gi~~~~dg~~lyv~ 169 (173)
|.|||+|..+.. ......+ .-..-.+...++++++|+.
T Consensus 231 GnlwR~dl~~~~~~~~~~~~~~~g~~PIt~aP~v~~~~~~~~V~fG 276 (335)
T PF05567_consen 231 GNLWRFDLSSANPSSWSVRTIFSGTQPITAAPAVVRDPDGRWVFFG 276 (335)
T ss_dssp SEEEEEE--TTSTT-GG-EESGGG-----S--EEEE-TTSSEEEEE
T ss_pred CcEEEEECCCCCcccceeeecccCcCCeEecceEEecCCCCEEEEE
Confidence 899999986432 1111111 1111245556777766653
No 389
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=1.2e+02 Score=27.66 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=36.5
Q ss_pred eEEEcCCC-C---EEEEc-CCCeEEEEcCCC----c-EE---EeccccCccccceEEccCCcEEEEEeCCC-eEEEEccC
Q 030675 14 DVSVDGNG-V---LYTAT-GDGWIKRMHPNG----T-WE---DWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEE 79 (173)
Q Consensus 14 ~l~~~~~g-~---l~~~~-~~~~i~~~~~~g----~-~~---~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~ 79 (173)
.|+|.+.| . |.++. .+|.|.-|+++- . .. ....+.+... ||-|++...-+..+...+ .|+..|-+
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccC
Confidence 46776633 2 45555 678888887532 1 11 1223445566 999998765314444333 46666655
Q ss_pred C
Q 030675 80 G 80 (173)
Q Consensus 80 g 80 (173)
.
T Consensus 148 n 148 (1049)
T KOG0307|consen 148 K 148 (1049)
T ss_pred C
Confidence 4
No 390
>smart00284 OLF Olfactomedin-like domains.
Probab=44.38 E-value=1.3e+02 Score=22.52 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=45.7
Q ss_pred ceEEEcCCC--CEEEEc-CCCeEE--EEcCCC-cEE-EeccccCccccceEEccCCcEEEEEeCC----CeEEEEcc--C
Q 030675 13 EDVSVDGNG--VLYTAT-GDGWIK--RMHPNG-TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVSE--E 79 (173)
Q Consensus 13 ~~l~~~~~g--~l~~~~-~~~~i~--~~~~~g-~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~i~~~~~--~ 79 (173)
-.+|+|++| -||.+. ..|.|. |+|++. +++ .|......+..|=+|--=|.| |+.... ..|....+ .
T Consensus 131 iDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvL-Y~~~s~~~~~~~I~yayDt~t 209 (255)
T smart00284 131 IDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMICGIL-YVTRSLGSKGEKVFYAYDTNT 209 (255)
T ss_pred EEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEE-EEEccCCCCCcEEEEEEECCC
Confidence 357888777 355555 445544 777643 333 343322221103333333445 776632 23444332 2
Q ss_pred CcEEEEeccCCccccCCccEEEcCC-CcEEEEe
Q 030675 80 GVTVLVSQFNGSQLRFANDVIEASD-GSLYFTV 111 (173)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~ 111 (173)
+.+.........+......|...|. ..||+=|
T Consensus 210 ~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 210 GKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred CccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 3222222222233345566777774 4577664
No 391
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.04 E-value=1.7e+02 Score=22.73 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCcceEEEcC-CCCEE-EEcCCCeEEEEcC--CCcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cE
Q 030675 10 NHPEDVSVDG-NGVLY-TATGDGWIKRMHP--NGTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VT 82 (173)
Q Consensus 10 ~~p~~l~~~~-~g~l~-~~~~~~~i~~~~~--~g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~ 82 (173)
+....|+|+| ...+. .+..++.|..|+. +|..... ......|.+.++++.||..+|.+.-...+-.+| ..| ..
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS 107 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee
Confidence 4456799999 45666 4448898888874 3444332 222334544999999998856654444444445 355 55
Q ss_pred EEE
Q 030675 83 VLV 85 (173)
Q Consensus 83 ~~~ 85 (173)
.+.
T Consensus 108 ~v~ 110 (347)
T KOG0647|consen 108 QVA 110 (347)
T ss_pred eee
Confidence 554
No 392
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=40.92 E-value=2.8e+02 Score=25.11 Aligned_cols=44 Identities=5% Similarity=0.011 Sum_probs=23.8
Q ss_pred EEEEcCCCeEEEEcCCCcEEE-e-ccccCccccceEEccCCcEEEEE
Q 030675 23 LYTATGDGWIKRMHPNGTWED-W-HQVGSQSLLGLTTTKENNVIIVC 67 (173)
Q Consensus 23 l~~~~~~~~i~~~~~~g~~~~-~-~~~~~~p~~gl~~~~~g~l~~v~ 67 (173)
.|+.+..++|...|-+|.-.+ + ........ ...++|||+.+..|
T Consensus 322 Afv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~-sP~~SPDG~~vAY~ 367 (912)
T TIGR02171 322 AFRNDVTGNLAYIDYTKGASRAVEIEDTISVY-HPDISPDGKKVAFC 367 (912)
T ss_pred EEEEcCCCeEEEEecCCCCceEEEecCCCcee-cCcCCCCCCEEEEE
Confidence 345544456777776664322 2 12222223 56689999876553
No 393
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=40.68 E-value=2.4e+02 Score=24.42 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=17.8
Q ss_pred CCceEEEEcCCC--CeeEEeeccccCcceEEEccC--CCEEEE
Q 030675 130 PHGVLLKYDPST--NQTSLVLDGLYFANGVALSED--ERFLVV 168 (173)
Q Consensus 130 ~~~~v~~~d~~~--~~~~~~~~~~~~p~gi~~~~d--g~~lyv 168 (173)
....++.++.+. .++.++. +.++|+.++.+ ++..|+
T Consensus 246 ~tsE~~ll~a~~p~~~p~vv~---pr~~g~eY~~eh~~d~f~i 285 (682)
T COG1770 246 ITSEVRLLDADDPEAEPKVVL---PRENGVEYSVEHGGDRFYI 285 (682)
T ss_pred cceeEEEEecCCCCCceEEEE---EcCCCcEEeeeecCcEEEE
Confidence 345666666543 3333333 23567666543 444444
No 394
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=39.80 E-value=56 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=18.4
Q ss_pred eEEEcC-CC-CEEEEcCCCeEEEEcCCCc
Q 030675 14 DVSVDG-NG-VLYTATGDGWIKRMHPNGT 40 (173)
Q Consensus 14 ~l~~~~-~g-~l~~~~~~~~i~~~~~~g~ 40 (173)
-+-|+| ++ +||++..+|.+++||..+.
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~~ 256 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDASTT 256 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCCc
Confidence 356666 33 6777777778888876664
No 395
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.83 E-value=3.3e+02 Score=25.36 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=55.3
Q ss_pred ceEEEcCCC--CEEEEcCCCeEEEEcCCC-cEEE---ecc---ccCccccceEEccCCcEEEEEeCCCeEEEEccCC--c
Q 030675 13 EDVSVDGNG--VLYTATGDGWIKRMHPNG-TWED---WHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--V 81 (173)
Q Consensus 13 ~~l~~~~~g--~l~~~~~~~~i~~~~~~g-~~~~---~~~---~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~ 81 (173)
.++.+.+.| .|+.+..+|.|..+|.-. ..+. +.. -++... .|.+++.-.+ +.|...+.|..++..| .
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT-al~VH~hapi-iAsGs~q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT-ALTVHEHAPI-IASGSAQLIKIYSLSGEQL 1337 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce-eeeeccCCCe-eeecCcceEEEEecChhhh
Confidence 445555544 566666888999888543 2111 111 122355 8889888888 8877664444444566 2
Q ss_pred EEE--EeccCCccccCCccEEEcCCCcEEE
Q 030675 82 TVL--VSQFNGSQLRFANDVIEASDGSLYF 109 (173)
Q Consensus 82 ~~~--~~~~~~~~~~~~~~l~~~~dG~~~v 109 (173)
..+ -..+-+++..++..|+++|---+.+
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhh
Confidence 222 2234456667788889988543333
No 396
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=38.39 E-value=2e+02 Score=24.79 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=30.6
Q ss_pred CEEEEcCCCeEEEEcCCCc--------EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 22 VLYTATGDGWIKRMHPNGT--------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 22 ~l~~~~~~~~i~~~~~~g~--------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
.||+++.+|.|..++.... +..+..+-+... .+.+.+ |...+|...++...+++
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAif-Dl~wap-ge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIF-DLKWAP-GESLLVSASGDSTIRPW 127 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeE-eeccCC-CceeEEEccCCceeeee
Confidence 5778888888877763321 222333334445 666667 55557776665444444
No 397
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=35.87 E-value=2.6e+02 Score=23.38 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=53.9
Q ss_pred ceEEEcCCC--CEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccCC-cEEEE
Q 030675 13 EDVSVDGNG--VLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEEG-VTVLV 85 (173)
Q Consensus 13 ~~l~~~~~g--~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~g-~~~~~ 85 (173)
...+|.|.+ ...++. +...+..++..|.+....+ ...-+ -+.|++.+++++++.-++ .+..+++.| +...
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~P-e~~rN-T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~- 354 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFP-EQKRN-TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA- 354 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccceEEecC-Ccccc-cccccCcccEEEEecCCccccceEEeccCCceEEE-
Confidence 457777644 333332 4455667776777544322 22234 788999999866665442 366666666 3332
Q ss_pred eccCCccccCCccEEEcCCCcEEEEeCc
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTVSS 113 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~ 113 (173)
....+ ....-..++|||.+|-++..
T Consensus 355 ~~~~~---~n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 355 GAFNG---LNTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred EEeec---CCceEeeccCCceEEEecCC
Confidence 12222 12334567899998887643
No 398
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=34.05 E-value=2.3e+02 Score=22.15 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCCeEEEEccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030675 60 ENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD 138 (173)
Q Consensus 60 ~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 138 (173)
+++| ++++-++.=+.+-.+|...+........|+.|.-|++-|.|. -|++|. ...+..+.++
T Consensus 180 ~~~L-h~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~----------------p~~ad~~~~~ 242 (330)
T KOG1379|consen 180 NGKL-HTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDV----------------PDSADVTSFD 242 (330)
T ss_pred CCeE-EEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCC----------------ccccceEEEe
Confidence 6777 998877533333344522222233333467888899888775 344431 1335677777
Q ss_pred CCCCeeEEeec
Q 030675 139 PSTNQTSLVLD 149 (173)
Q Consensus 139 ~~~~~~~~~~~ 149 (173)
..-|.+..+++
T Consensus 243 v~~GDvIilAT 253 (330)
T KOG1379|consen 243 VQKGDVIILAT 253 (330)
T ss_pred ccCCCEEEEec
Confidence 77676666654
No 399
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=33.36 E-value=63 Score=15.52 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=15.8
Q ss_pred cceEEEcCCCCEEEEcCCCeEEEE
Q 030675 12 PEDVSVDGNGVLYTATGDGWIKRM 35 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~~~~~i~~~ 35 (173)
...+.+.+++.+|..+.++.|++.
T Consensus 10 l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 10 LVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred EEEEEECCCCeEEEEcCCCCEEEE
Confidence 445666666677766667777765
No 400
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.33 E-value=3.2e+02 Score=23.62 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=20.9
Q ss_pred ceEEccCCcEEEEEeCCCeEEEEccCC
Q 030675 54 GLTTTKENNVIIVCDSQQGLLKVSEEG 80 (173)
Q Consensus 54 gl~~~~~g~l~~v~~~~~~i~~~~~~g 80 (173)
.|..|.-|..||+....+.|+.++..+
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccc
Confidence 577888887778887888899888533
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.30 E-value=81 Score=16.74 Aligned_cols=30 Identities=20% Similarity=-0.038 Sum_probs=21.0
Q ss_pred CcceEEEcCCCCEEE-EcCCCeEEEEcCCCc
Q 030675 11 HPEDVSVDGNGVLYT-ATGDGWIKRMHPNGT 40 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~-~~~~~~i~~~~~~g~ 40 (173)
....+.|.|...|++ +..+|.|+.+..+++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 345788999888874 447788776665543
No 402
>PRK13614 lipoprotein LpqB; Provisional
Probab=32.34 E-value=3.2e+02 Score=23.31 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=46.2
Q ss_pred cceEEEcCCCCEEEEc-CCC-eEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEEccCC--c-E--
Q 030675 12 PEDVSVDGNGVLYTAT-GDG-WIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEEG--V-T-- 82 (173)
Q Consensus 12 p~~l~~~~~g~l~~~~-~~~-~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~~g--~-~-- 82 (173)
+..+++.++|..+..- .++ .++.....+....+.. +.... ...|+.+|-+ |....++ .++++..+| . .
T Consensus 345 ~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~-g~~Lt-~PS~d~~g~v-Wtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 345 PASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTS-GSTLT-RPSFSPQDWV-WTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred ccceeecCCCceEEEecCCCcEEEEecCCCcceeeec-CCCcc-CCcccCCCCE-EEeeCCCCceEEEEecCCCcccccc
Confidence 4556677766555322 223 4444433333222222 22223 4458888866 8777665 677766544 1 1
Q ss_pred ---EE-EeccCCccccCCccEEEcCCCc
Q 030675 83 ---VL-VSQFNGSQLRFANDVIEASDGS 106 (173)
Q Consensus 83 ---~~-~~~~~~~~~~~~~~l~~~~dG~ 106 (173)
.+ .....+ .....+.+++||.
T Consensus 422 ~~~~v~~~~l~g---~~I~~lrvSrDG~ 446 (573)
T PRK13614 422 PTVTLTADWLAG---RTVKELRVSREGV 446 (573)
T ss_pred cceeecccccCC---CeeEEEEECCCcc
Confidence 11 111222 2367899999993
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.89 E-value=2.1e+02 Score=26.40 Aligned_cols=81 Identities=19% Similarity=0.155 Sum_probs=45.3
Q ss_pred eEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030675 72 GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG 150 (173)
Q Consensus 72 ~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 150 (173)
.++..+..| ..++......+ .....+++..+|++... +-+.|.|..+|..++.+-.+.+.
T Consensus 110 hvl~~d~~~nL~~~~~ne~v~--~~Vtsvafn~dg~~l~~-----------------G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 110 HVLLSDMTGNLGPLHQNERVQ--GPVTSVAFNQDGSLLLA-----------------GLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred hhhhhhhhcccchhhcCCccC--CcceeeEecCCCceecc-----------------ccCCCcEEEEEccCCcceeeeee
Confidence 355555555 44333222211 34567899999976554 22457888999887776666655
Q ss_pred ccCcc-eEE---EccCCCEEEEEec
Q 030675 151 LYFAN-GVA---LSEDERFLVVCES 171 (173)
Q Consensus 151 ~~~p~-gi~---~~~dg~~lyv~~~ 171 (173)
...|+ |+- ++.++..++.+|.
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccC
Confidence 55554 322 2334445665554
No 404
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=31.35 E-value=1.9e+02 Score=26.07 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=49.7
Q ss_pred cceEEEcCCCCEEE-Ec----CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEE
Q 030675 12 PEDVSVDGNGVLYT-AT----GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLV 85 (173)
Q Consensus 12 p~~l~~~~~g~l~~-~~----~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~ 85 (173)
|.=..|+|..-++. +. ..|.+-.+--+|.-.+-..-+-... .++++|..-+ ....++.+..-+...+ .+. .
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hat-SLCWHpe~~v-La~gwe~g~~~v~~~~~~e~-h 94 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHAT-SLCWHPEEFV-LAQGWEMGVSDVQKTNTTET-H 94 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehh-hhccChHHHH-HhhccccceeEEEecCCcee-e
Confidence 33356777666652 22 4455555543454332222233456 7888888444 4455566666665544 222 1
Q ss_pred eccCCccccCCccEEEcCCCcEEEEe
Q 030675 86 SQFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
......+ .-...+.++++|+..++-
T Consensus 95 tv~~th~-a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 95 TVVETHP-APIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred eeccCCC-CCceeEEecCCCCeEEEc
Confidence 1111111 123567889999877763
No 405
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.07 E-value=2.4e+02 Score=21.47 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=36.9
Q ss_pred cceEEEcC--CCCEEEEc-------CCCeEEEEcCC-C-cEEEe--ccccCccccceEEccC-CcEEEEEeCCCeEEEEc
Q 030675 12 PEDVSVDG--NGVLYTAT-------GDGWIKRMHPN-G-TWEDW--HQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 12 p~~l~~~~--~g~l~~~~-------~~~~i~~~~~~-g-~~~~~--~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~ 77 (173)
-.++.++| +++|-++. .+|+++.++.+ + .+... .+...... ++++++. .+.+++| .++|-+++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lf-dV~Wse~~e~~~~~a-~GDGSLrl~ 88 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLF-DVAWSENHENQVIAA-SGDGSLRLF 88 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeeccccee-EeeecCCCcceEEEE-ecCceEEEe
Confidence 46788888 66766544 35788888764 2 23322 23344556 7778764 3443555 454555544
Q ss_pred c
Q 030675 78 E 78 (173)
Q Consensus 78 ~ 78 (173)
.
T Consensus 89 d 89 (311)
T KOG0277|consen 89 D 89 (311)
T ss_pred c
Confidence 3
No 406
>PRK13615 lipoprotein LpqB; Provisional
Probab=31.01 E-value=3.3e+02 Score=23.11 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=45.4
Q ss_pred cceEEEcCCCCEEEE-cCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCe--EEEEccCC-cEEEE-e
Q 030675 12 PEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG--LLKVSEEG-VTVLV-S 86 (173)
Q Consensus 12 p~~l~~~~~g~l~~~-~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~--i~~~~~~g-~~~~~-~ 86 (173)
|..+++.++|...+. +..+.++.....+....+.. ..... ...|+.+|-+ |....+.. +.....+| ...+. .
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~-~~~Lt-~PS~d~~g~v-Wtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDT-RPGLV-APSLDAQGYV-WSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCcceeecc-CCccc-cCcCcCCCCE-EEEeCCCceEEEEecCCCceEEeecc
Confidence 466788777765533 33444444333333333322 22223 4458888866 77766543 22222456 32221 1
Q ss_pred ccCCccccCCccEEEcCCCc
Q 030675 87 QFNGSQLRFANDVIEASDGS 106 (173)
Q Consensus 87 ~~~~~~~~~~~~l~~~~dG~ 106 (173)
...+ .....+.+++||.
T Consensus 413 ~~~~---~~I~~lrvSrDG~ 429 (557)
T PRK13615 413 WTAT---GRVVSLEVARDGA 429 (557)
T ss_pred ccCC---CeeEEEEeCCCcc
Confidence 1222 3467899999993
No 407
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=30.69 E-value=2.5e+02 Score=21.49 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=14.3
Q ss_pred CcceEEEccCCCEEEEEec
Q 030675 153 FANGVALSEDERFLVVCES 171 (173)
Q Consensus 153 ~p~gi~~~~dg~~lyv~~~ 171 (173)
...||..+.....||+++-
T Consensus 206 QTEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE 224 (364)
T ss_pred cccceeeccccceEEEeec
Confidence 3468888877778999863
No 408
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=30.57 E-value=2.4e+02 Score=21.35 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=14.3
Q ss_pred cCCcceEEEcC-CCCEEEEc
Q 030675 9 VNHPEDVSVDG-NGVLYTAT 27 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~ 27 (173)
+.+|+|+.++. .|.+-+..
T Consensus 184 ~~a~egV~i~a~ag~I~~~a 203 (264)
T PF04790_consen 184 MRAPEGVHIEAKAGDIEASA 203 (264)
T ss_pred EECCCCeEEEeccCcEEEEe
Confidence 67888888887 66777655
No 409
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=2e+02 Score=23.34 Aligned_cols=67 Identities=15% Similarity=-0.009 Sum_probs=39.3
Q ss_pred CCcceEEEcC--CCCEEEEcCCCeEEEEcCCCcEE-EeccccCccccceEEccCCcE-EEEEeCCCeEEEEc
Q 030675 10 NHPEDVSVDG--NGVLYTATGDGWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKENNV-IIVCDSQQGLLKVS 77 (173)
Q Consensus 10 ~~p~~l~~~~--~g~l~~~~~~~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~g~l-~~v~~~~~~i~~~~ 77 (173)
....++++.| +|-+-+...+..|-.+|...+.. ........+. .++||.|.+. +|..+....|+.+|
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~w-SC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIW-SCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCce-eeeeccCCcceeEEeccCceEEEEE
Confidence 4567788888 34455666666777777554432 2223346778 8899976544 34333333466666
No 410
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.00 E-value=2.1e+02 Score=21.63 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=38.6
Q ss_pred cCCccCCcceEEEcC-CC--CEEEEc--CCCeEEEEcCCCc---EEE-e-ccccCccccceEEccCCcEEEEEeCCCeEE
Q 030675 5 GEGIVNHPEDVSVDG-NG--VLYTAT--GDGWIKRMHPNGT---WED-W-HQVGSQSLLGLTTTKENNVIIVCDSQQGLL 74 (173)
Q Consensus 5 ~~~~~~~p~~l~~~~-~g--~l~~~~--~~~~i~~~~~~g~---~~~-~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~ 74 (173)
.++-..-.+.+|+.| .| .-+++. .++.+..|..+.. +.. + .+...... .+.++..|++|-|+...+.+.
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w-~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVW-RVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceE-EEEEeccccEEEEecCCcEEE
Confidence 334345567788888 33 344333 7788777754332 221 1 12223345 677888898867766555433
No 411
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=29.10 E-value=25 Score=15.80 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=5.3
Q ss_pred EEccCCC
Q 030675 158 ALSEDER 164 (173)
Q Consensus 158 ~~~~dg~ 164 (173)
.|||+|+
T Consensus 7 ~FSp~Gr 13 (23)
T PF10584_consen 7 TFSPDGR 13 (23)
T ss_dssp SBBTTSS
T ss_pred eECCCCe
Confidence 4788887
No 412
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=28.18 E-value=63 Score=13.90 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=13.8
Q ss_pred CcceEEEcCCCCEEEEc-CCCeEEEE
Q 030675 11 HPEDVSVDGNGVLYTAT-GDGWIKRM 35 (173)
Q Consensus 11 ~p~~l~~~~~g~l~~~~-~~~~i~~~ 35 (173)
...++.+.+++.++++. .++.+..|
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEc
Confidence 35567777755544433 55555444
No 413
>PF13964 Kelch_6: Kelch motif
Probab=26.73 E-value=1e+02 Score=15.93 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe
Q 030675 103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV 147 (173)
Q Consensus 103 ~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 147 (173)
-+++||+.=+.... ......+++||+++.+-+.+
T Consensus 10 ~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred ECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEEC
Confidence 45688886433110 12346899999998765544
No 414
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=26.63 E-value=2.7e+02 Score=20.71 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=43.6
Q ss_pred EEcCCCCEEEEcC--C--CeEEEEcCCC-----cEEEecc----ccCccccceEEccCCcEEEEEeCCCeEEEEccC---
Q 030675 16 SVDGNGVLYTATG--D--GWIKRMHPNG-----TWEDWHQ----VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE--- 79 (173)
Q Consensus 16 ~~~~~g~l~~~~~--~--~~i~~~~~~g-----~~~~~~~----~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~--- 79 (173)
++.++|++..+.. + ..+..+++.. .+..... ....|. ...-+||+++++.....-.+.+.+.
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT--~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT--ATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc--ceECCCCCEEEEeCcCCCcccccCCccC
Confidence 3456787776551 1 2344454322 3333211 122354 3345899995555444333433321
Q ss_pred C--cEE--EEe-ccCCccccCCccEEEcCCCcEEEEe
Q 030675 80 G--VTV--LVS-QFNGSQLRFANDVIEASDGSLYFTV 111 (173)
Q Consensus 80 g--~~~--~~~-~~~~~~~~~~~~l~~~~dG~~~v~~ 111 (173)
+ ... +.. ..+..+.+.-=.+.+-|||++|+..
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 1 111 111 1112222333457888999987753
No 415
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=25.97 E-value=5.1e+02 Score=23.68 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCC-EEEEcCCCeEEEEcCCC-c-EEEeccccCccccceEEccCCcEEEEEeCC
Q 030675 20 NGV-LYTATGDGWIKRMHPNG-T-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70 (173)
Q Consensus 20 ~g~-l~~~~~~~~i~~~~~~g-~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~ 70 (173)
+++ ++.++..|.|.-.|+.. + ...+....+... .||-.|++|..|...
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS---DfDv~GNlLitCG~S 236 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS---DFDVQGNLLITCGYS 236 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeecccccee---eeeccCCeEEEeecc
Confidence 554 44455777787777644 2 233433333333 567788995666533
No 416
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=4.3e+02 Score=22.79 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=32.9
Q ss_pred EEEcCCCCEEEEc-CCCeE--EEEcCCCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 15 VSVDGNGVLYTAT-GDGWI--KRMHPNGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 15 l~~~~~g~l~~~~-~~~~i--~~~~~~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
+.|.|.-.|++.. ..|.| +|.+ --++-.+. +...... .++|.+||+++.|.-....|..+|
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~-sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTA-SLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccce-eeeecCCCCEEEEEecCCeEEEEE
Confidence 5667766666443 44544 3443 12222222 1112224 799999999966665444455566
No 417
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=25.55 E-value=3.3e+02 Score=21.23 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred CcceEEEcCCC-CEEEEc-CCCeEEEEcCC--CcEEEecccc--CccccceEEccCCcEEEEE---eCCCeEEEEccCC-
Q 030675 11 HPEDVSVDGNG-VLYTAT-GDGWIKRMHPN--GTWEDWHQVG--SQSLLGLTTTKENNVIIVC---DSQQGLLKVSEEG- 80 (173)
Q Consensus 11 ~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~--g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~---~~~~~i~~~~~~g- 80 (173)
....++|..++ .+|++- .+|.+..+|.- .+.+.+.+.+ ..|.+=|++++..-- |.+ ...+.++.+|.--
T Consensus 198 EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCC
Confidence 35567887755 577655 77877777631 1222222222 334334555544322 322 2234566666321
Q ss_pred ---cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030675 81 ---VTVLVSQFNGSQLRFANDVIEASDGS-LYFT 110 (173)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~ 110 (173)
+..+... ....|+|+..|-.. ...+
T Consensus 277 ~tpva~L~~H-----~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 277 CTPVARLRNH-----QASVNGIAWAPHSSSHICT 305 (364)
T ss_pred CcceehhhcC-----cccccceEecCCCCceeee
Confidence 2222221 14689999999543 4334
No 418
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=25.27 E-value=3.4e+02 Score=21.32 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=26.1
Q ss_pred CCCEEEEc--CCCeEEEEcCC---CcEEEeccccC--ccccceEEccCCcEEEEEeC
Q 030675 20 NGVLYTAT--GDGWIKRMHPN---GTWEDWHQVGS--QSLLGLTTTKENNVIIVCDS 69 (173)
Q Consensus 20 ~g~l~~~~--~~~~i~~~~~~---g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~ 69 (173)
++.||+.. ....++++|.+ ++|....+... ... ..+..-++++ |+...
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~-~~~v~~~~~I-YV~GG 92 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ-AVAAFIDGKL-YVFGG 92 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc-ceEEEECCEE-EEEcC
Confidence 77999854 33457788753 56766543221 212 1222345566 88653
No 419
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=24.98 E-value=59 Score=28.04 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=13.3
Q ss_pred EEEccCCCEEEEEec
Q 030675 157 VALSEDERFLVVCES 171 (173)
Q Consensus 157 i~~~~dg~~lyv~~~ 171 (173)
++++.||++|||+|+
T Consensus 133 m~l~~dG~~lYiSEt 147 (768)
T KOG3558|consen 133 MALTQDGDFLYISET 147 (768)
T ss_pred EEEccCCCEEEEech
Confidence 677899999999986
No 420
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=24.92 E-value=2.9e+02 Score=20.42 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.5
Q ss_pred ccEEEcCCCcEEE
Q 030675 97 NDVIEASDGSLYF 109 (173)
Q Consensus 97 ~~l~~~~dG~~~v 109 (173)
..+.+++||.++.
T Consensus 136 ~~~~I~~dG~i~~ 148 (238)
T PRK12690 136 RSVAVGADGTLSA 148 (238)
T ss_pred ceEEECCCCeEEE
Confidence 3689999999865
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=4.2e+02 Score=22.14 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=15.8
Q ss_pred ccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 50 QSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
... .|.|++|.+++.|--....+-.+.
T Consensus 68 ~I~-SIkFSlDnkilAVQR~~~~v~f~n 94 (657)
T KOG2377|consen 68 EIK-SIKFSLDNKILAVQRTSKTVDFCN 94 (657)
T ss_pred cee-EEEeccCcceEEEEecCceEEEEe
Confidence 344 888888888744443334444444
No 422
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=24.19 E-value=2.9e+02 Score=20.18 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=9.1
Q ss_pred ccEEEcCCCcEEE
Q 030675 97 NDVIEASDGSLYF 109 (173)
Q Consensus 97 ~~l~~~~dG~~~v 109 (173)
-.++..+||.|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 4566677888775
No 423
>PF13983 YsaB: YsaB-like lipoprotein
Probab=23.77 E-value=87 Score=18.31 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.8
Q ss_pred EEEccCCCEEEEE
Q 030675 157 VALSEDERFLVVC 169 (173)
Q Consensus 157 i~~~~dg~~lyv~ 169 (173)
..|+|||++|..+
T Consensus 63 CSFD~dGqFLHLS 75 (77)
T PF13983_consen 63 CSFDADGQFLHLS 75 (77)
T ss_pred EeECCCCcEEEee
Confidence 5678888887664
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=23.69 E-value=1.1e+02 Score=24.82 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=27.9
Q ss_pred CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030675 96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF 153 (173)
Q Consensus 96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 153 (173)
...|.++|+|++-++.. .-|||+.+|..++.+-.+..+.+-
T Consensus 310 ~~~i~~sP~~~laA~tD-----------------slGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTD-----------------SLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCChhhhhhccCcc
Confidence 45678888887554421 237999999887777666666433
No 425
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=23.11 E-value=3.4e+02 Score=20.60 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=31.3
Q ss_pred CCCEEEEcCCCeEEEEc--CCCcEEEeccc--cCccccceEEccCCcEEEEEeCCCeEEEE--ccCC--cEEEEec
Q 030675 20 NGVLYTATGDGWIKRMH--PNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLLKV--SEEG--VTVLVSQ 87 (173)
Q Consensus 20 ~g~l~~~~~~~~i~~~~--~~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~~i~~~--~~~g--~~~~~~~ 87 (173)
+|.|.++. +.+|+.++ .+.++...... ..... .+.. -++++++++...++..+ +.++ ...+...
T Consensus 98 ~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~-sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d 169 (321)
T PF03178_consen 98 NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYIT-SLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARD 169 (321)
T ss_dssp TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEE-EEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE
T ss_pred CCEEEEee-cCEEEEEEccCcccchhhheecceEEEE-EEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEec
Confidence 56655544 34555444 33324443222 22233 3433 34465888877766554 5544 5555543
No 426
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=22.97 E-value=3.4e+02 Score=23.07 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCcceEEEcCCC-CEE-EEcCCCeEEEEcCC----CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030675 10 NHPEDVSVDGNG-VLY-TATGDGWIKRMHPN----GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS 77 (173)
Q Consensus 10 ~~p~~l~~~~~g-~l~-~~~~~~~i~~~~~~----g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~ 77 (173)
..-.+++|+|.. .+| +.+.+|.|..||.- +-....... ..+.+-+.+++.|+++.+.+....+..++
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 345678999965 455 45588999999842 212221111 22221556666788844444443344333
No 427
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=22.79 E-value=56 Score=17.77 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.7
Q ss_pred ccEEEcCCCcEEEEe
Q 030675 97 NDVIEASDGSLYFTV 111 (173)
Q Consensus 97 ~~l~~~~dG~~~v~~ 111 (173)
..+.+++||.+|...
T Consensus 6 ~~~~I~~dG~v~pC~ 20 (64)
T PF13186_consen 6 NSLYIDPDGDVYPCC 20 (64)
T ss_pred eEEEEeeCccEEeCC
Confidence 568999999999983
No 428
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=21.00 E-value=3.4e+02 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=23.5
Q ss_pred cCCcceEEEcC-CCCEEEEcCCCeEEEEcCCCc
Q 030675 9 VNHPEDVSVDG-NGVLYTATGDGWIKRMHPNGT 40 (173)
Q Consensus 9 ~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~g~ 40 (173)
......+.||+ ++.||....+.++..||.-|+
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 56677899999 456666667888999986554
No 429
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=20.75 E-value=3.7e+02 Score=20.07 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=44.7
Q ss_pred eEEEcCCC--CEEEEc-CCCe--EEEEcCCC-cEE-EeccccCccccceEEccCCcEEEEEeCCC----eEEEEcc--CC
Q 030675 14 DVSVDGNG--VLYTAT-GDGW--IKRMHPNG-TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQ----GLLKVSE--EG 80 (173)
Q Consensus 14 ~l~~~~~g--~l~~~~-~~~~--i~~~~~~g-~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~----~i~~~~~--~g 80 (173)
.+|+|++| -||.+. ..|. |-++|++. .++ .|......+..|=+|--=|-| |+..... .|....+ .+
T Consensus 127 D~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCGvL-Y~~~s~~~~~~~I~yafDt~t~ 205 (250)
T PF02191_consen 127 DFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCGVL-YATDSYDTRDTEIFYAFDTYTG 205 (250)
T ss_pred EEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEeeEE-EEEEECCCCCcEEEEEEECCCC
Confidence 57888766 344444 3343 34677643 333 333322222113344334445 6665432 2333322 33
Q ss_pred cEEEEeccCCccccCCccEEEcC-CCcEEEEeC
Q 030675 81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVS 112 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~ 112 (173)
.+.........+......|..+| |..||+=|.
T Consensus 206 ~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 206 KEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred ceeceeeeeccccCceEeeeECCCCCeEEEEEC
Confidence 22222222233344566677777 445777653
Done!