RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 030676
(173 letters)
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
Length = 181
Score = 267 bits (685), Expect = 5e-93
Identities = 111/172 (64%), Positives = 136/172 (79%), Gaps = 1/172 (0%)
Query: 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
MVKY+++P NP+KS KA+GSDLRVHFKNT ETA AI+ + L +A++YLEDV+A K+ +PF
Sbjct: 1 MVKYARKPQNPSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPF 60
Query: 61 TRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
RF GGVGRTAQAK + QGRWP KS KF+L LLKNAE+NAE KGLDV+ L ISH+QV
Sbjct: 61 RRFNGGVGRTAQAKE-FGHTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQV 119
Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSKSK 172
N+A + RRRTYRAHGRINP+MSSPCHIEL +EK+E V K E +K +
Sbjct: 120 NRAPRGRRRTYRAHGRINPFMSSPCHIELIATEKDETVPKPKEAPKKQTKKQ 171
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein
L22(archaeal)/L17(eukaryotic/archaeal). This model
describes the ribosomal protein of the eukaryotic
cytosol and of the Archaea, variously designated as L17,
L22, and L23. The corresponding bacterial homolog,
described by a separate model, is designated L22
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 150
Score = 200 bits (511), Expect = 5e-67
Identities = 87/151 (57%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
YS +P++PTKS KARG +LRV FKN RETA AIR + L KA++YLEDV+ K+A+PF R+
Sbjct: 1 YSYKPEDPTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRY 60
Query: 64 CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQA 123
G VG K GR+PVK+AKFIL +L+NAE+NAE KGLDV+ L I HIQ N+
Sbjct: 61 NGKVGHRRGLKEWGW-TAGRYPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKG 119
Query: 124 QKQRRRTYRAHGRINPYMSSPCHIELTLSEK 154
K RR RA GR PY SSP HIEL + EK
Sbjct: 120 PKIRRWMPRAFGRATPYNSSPTHIELVVEEK 150
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed.
Length = 153
Score = 148 bits (377), Expect = 2e-46
Identities = 65/158 (41%), Positives = 89/158 (56%), Gaps = 14/158 (8%)
Query: 1 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPF 60
+ YS + D P K+ KA G +L + K++ E A IR + L +AK YLEDV+A K+A+PF
Sbjct: 3 RINYSVKAD-PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPF 61
Query: 61 TRFCGGVGRTAQAKNRHPNGQ-----GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYI 115
R VG H G GR+PVK+AK L LL+NAE+NAE KGLD + L I
Sbjct: 62 KRHNKKVG--------HRKGIDGWPAGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVI 113
Query: 116 SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
HI ++ + + RA GR P + +IE+ L E
Sbjct: 114 VHIAAHKGRVIKGYMPRAFGRATPKNTETVNIEVILEE 151
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that
interacts with all six domains of 23S rRNA, and is one
of the proteins important for directing the proper
folding and stabilizing the conformation of 23S rRNA.
L22 is the largest protein contributor to the surface of
the polypeptide exit channel, the tunnel through which
the polypeptide product passes. L22 is also one of six
proteins located at the putative translocon binding site
on the exterior surface of the ribosome.
Length = 105
Score = 126 bits (318), Expect = 3e-38
Identities = 52/138 (37%), Positives = 63/138 (45%), Gaps = 34/138 (24%)
Query: 15 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAK 74
KA+G LR+ K R A IR + + +A LE V
Sbjct: 1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFV----------------------- 37
Query: 75 NRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGL-DVDALYISHIQVNQAQKQRRRTYRA 133
P K+AK IL LLK+AE+NAE GL D D LYI HIQVN+ +RR RA
Sbjct: 38 ----------PKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRA 87
Query: 134 HGRINPYMSSPCHIELTL 151
GR NP CHI + L
Sbjct: 88 RGRANPIRKRTCHITVVL 105
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. This family
includes L22 from prokaryotes and chloroplasts and L17
from eukaryotes.
Length = 105
Score = 113 bits (286), Expect = 3e-33
Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 34/138 (24%)
Query: 17 ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNR 76
A +R+ K R A IR + +A LE V
Sbjct: 1 AVARYIRISPKKARLVADLIRGKSVEEALAILEFV------------------------- 35
Query: 77 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
P K+AK IL LLK+A +NAE KGLD D LYI I V++ +R RA G
Sbjct: 36 --------PKKAAKIILKLLKSAVANAENNKGLDPDNLYIKEIFVDKGPTLKRFRPRARG 87
Query: 136 RINPYMSSPCHIELTLSE 153
R P HI + LSE
Sbjct: 88 RATPIRKRTSHITIVLSE 105
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 108 bits (273), Expect = 3e-31
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 35/154 (22%)
Query: 4 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRF 63
YS + + P KA+ LR+ K R A IR + +A LE V
Sbjct: 1 YSAKVE-PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFV------------ 47
Query: 64 CGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAE-VKGLDVDALYISHIQVNQ 122
P K+AK + +L++A +NAE KGLD D L +SHI V++
Sbjct: 48 ---------------------PKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDK 86
Query: 123 AQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
+R RA GR HI + + EKE+
Sbjct: 87 GPVLKRFMPRARGRATRINKRTSHITVVVREKEK 120
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
Length = 112
Score = 54.7 bits (133), Expect = 2e-10
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 85 PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
P K+A+ + +LK+A +NAE GLD+D L + V++ +R RA GR +
Sbjct: 40 PKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKR 99
Query: 144 PCHIELTLSEKEE 156
HI + ++EKEE
Sbjct: 100 TSHITVVVAEKEE 112
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22.
Length = 117
Score = 43.0 bits (102), Expect = 6e-06
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 85 PVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
P ++ IL L+ +A +NA GL+ L+IS +V++ +R RA GR P
Sbjct: 47 PYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKP 106
Query: 144 PCHIELTLSEK 154
CHI + L +
Sbjct: 107 TCHITIVLKDI 117
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 41.2 bits (96), Expect = 8e-05
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 85 PVKSAKFILDLLKNAESNAEV--KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS 142
P K A +L LL +A SN + K +D LYI I NQ +R RA G +
Sbjct: 40 PKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFK 99
Query: 143 SPCHIELTLSEKEEPVKKEPETQLATSKSKK 173
H+E+ LS+ E E +LA K+KK
Sbjct: 100 RTTHLEIVLSDD----VNEREKELAAIKAKK 126
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This
model decribes bacterial and chloroplast ribosomal
protein L22 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 103
Score = 34.4 bits (79), Expect = 0.006
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 85 PVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSS 143
P K+A I +L +A +NAE GLD D L + I V++ +R RA GR +
Sbjct: 36 PKKAAPLIKKVLASAIANAEHNYGLDADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKR 95
Query: 144 PCHIELTL 151
HI + +
Sbjct: 96 TSHITVVV 103
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 27.8 bits (62), Expect = 3.6
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 138 NPYMSSPCHIELTLSEKEEPVKKEPET 164
N ++ + +EL E+ P E ++
Sbjct: 500 NSFLWNVADVELKFPEEPAPSTVEAKS 526
>gnl|CDD|148521 pfam06950, DUF1293, Protein of unknown function (DUF1293). This
family consists of several bacterial and phage proteins
of around 115 residues in length. The function of this
family is unknown.
Length = 115
Score = 26.0 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 123 AQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
++K +RRT G +NP P I+ T + K E
Sbjct: 35 SEKFKRRTLGESGDVNPQWDQPLMIDHTYALKLE 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,326,370
Number of extensions: 725250
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 22
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)