RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030676
         (173 letters)



>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score =  160 bits (407), Expect = 7e-52
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 2   VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFT 61
           + YS E D P  + KA   + ++ FK+++  A  I+     +A  YLE V+   Q +PF 
Sbjct: 2   ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFK 60

Query: 62  RFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVN 121
           +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  +
Sbjct: 61  QHNSGVGHKSKVDGW---DAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAH 117

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 153
           +  +Q+ R  RA GR + + S    +EL L E
Sbjct: 118 KVGEQQGRKPRAMGRASAWNSPQVDVELILEE 149


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 66.0 bits (161), Expect = 2e-15
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 34/139 (24%)

Query: 17  ARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNR 76
           A+    R   +  R  A  IR   +++A   L                            
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILT--------------------------- 33

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHG 135
                     K+A  +  +L++A +NAE   G D+D L ++ I V++    +R   RA G
Sbjct: 34  ------YTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKG 87

Query: 136 RINPYMSSPCHIELTLSEK 154
           R +  +    HI + +S++
Sbjct: 88  RADRILKRTSHITVVVSDR 106


>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 64.4 bits (157), Expect = 1e-14
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 34/155 (21%)

Query: 3   KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTR 62
           K  K+     K   A    +R+  +  R     IR   +  A+  L              
Sbjct: 5   KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLR------------- 51

Query: 63  FCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVN 121
                                 P  +++ +  +L +A++NA     +  D L++    V+
Sbjct: 52  --------------------FIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVD 91

Query: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEE 156
                +R   RA G  N       HI + ++EK  
Sbjct: 92  AGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGN 126


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 55.2 bits (133), Expect = 3e-11
 Identities = 28/142 (19%), Positives = 44/142 (30%), Gaps = 37/142 (26%)

Query: 16  KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN 75
           KA    +R+  +  R     IR   L +A+  L                           
Sbjct: 4   KAIARYVRISPRKVRLVVDLIRGKSLEEARNILR-------------------------- 37

Query: 76  RHPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAH 134
                      + A F+  +L++A +NA        D LY+    V++      R   A 
Sbjct: 38  -------YTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPAVLPR---AR 87

Query: 135 GRINPYMSSPCHIELTLSEKEE 156
           GR +       HI + L EK  
Sbjct: 88  GRADIIKKRTSHITVILGEKHG 109


>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia
           coli [TaxId: 562]}
          Length = 200

 Score = 26.3 bits (57), Expect = 1.6
 Identities = 5/42 (11%), Positives = 14/42 (33%)

Query: 77  HPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHI 118
                     + + + ++  +   S  E+   D+ A  I  +
Sbjct: 9   SILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVL 50


>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 21.9 bits (46), Expect = 8.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 17 ARGSDLRVHFKN 28
          AR SDL VH + 
Sbjct: 13 ARKSDLGVHLRK 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,986
Number of extensions: 25361
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 9
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)