BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030677
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 31/36 (86%)

Query: 116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR 36


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 35.8 bits (81), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 15/28 (53%), Positives = 22/28 (78%)

Query: 116 VEEPVFVNAKQYHGILRRRQSRAKAESE 143
           +E P++VNAKQ+H IL+RR +R K E +
Sbjct: 1   MESPLYVNAKQFHRILKRRVARQKLEEQ 28


>pdb|2Y9Z|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
           Complex
          Length = 624

 Score = 26.2 bits (56), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 19  ADEQRKHPESQL---QSSTPAMGMSHPSITTPNV 49
           +D+    P++ L      TP +  SHP I TPN+
Sbjct: 196 SDQDISKPKTALFEQDEQTPVVDPSHPEILTPNI 229


>pdb|2Y9Y|B Chain B, Chromatin Remodeling Factor Isw1a(Del_atpase)
          Length = 624

 Score = 26.2 bits (56), Expect = 8.7,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 19  ADEQRKHPESQL---QSSTPAMGMSHPSITTPNV 49
           +D+    P++ L      TP +  SHP I TPN+
Sbjct: 196 SDQDISKPKTALFEQDEQTPVVDPSHPEILTPNI 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,738,252
Number of Sequences: 62578
Number of extensions: 104727
Number of successful extensions: 184
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)