Query 030677
Match_columns 173
No_of_seqs 142 out of 205
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 04:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 99.9 5.8E-23 2E-27 145.4 3.0 44 116-159 1-45 (64)
2 3hde_A Lysozyme; antimicrobial 26.6 35 0.0012 26.3 2.3 24 118-141 137-160 (165)
3 1xju_A Lysozyme; secreted inac 24.6 40 0.0014 25.8 2.3 27 118-144 127-153 (163)
4 2anv_A Lysozyme; direct method 22.5 27 0.00092 26.1 0.9 21 119-140 123-143 (146)
5 1xjt_A Lysozyme; open conforma 20.0 55 0.0019 25.9 2.3 27 118-144 155-181 (191)
6 2k2w_A Recombination and DNA r 10.4 82 0.0028 24.1 0.8 13 117-129 17-29 (118)
7 3hdf_A Lysozyme; antimicrobial 10.2 25 0.00086 26.3 -2.1 23 119-141 113-135 (140)
8 1qfq_B N36, 36-MER N-terminal 9.7 1.1E+02 0.0037 19.0 1.1 15 131-145 4-18 (35)
9 3gxv_A Replicative DNA helicas 9.4 1.7E+02 0.0059 21.0 2.3 26 118-143 88-113 (123)
10 3iz5_i 60S ribosomal protein L 8.9 2E+02 0.007 21.9 2.6 22 128-149 84-105 (119)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=99.86 E-value=5.8e-23 Score=145.37 Aligned_cols=44 Identities=41% Similarity=0.613 Sum_probs=40.2
Q ss_pred CCCceEecchhhHHHHHHHHHHHHHHhhcccc-ccccccchhhcc
Q 030677 116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKACHKLQVL 159 (173)
Q Consensus 116 ~eePiyVNaKQY~rILrRRq~RaKlE~~~kl~-k~RKpYlhe~~~ 159 (173)
.||||||||||||+|||||++|||+|+++|++ |.|||||||+-|
T Consensus 1 ~eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH 45 (64)
T 4g92_A 1 MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRH 45 (64)
T ss_dssp --CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHH
T ss_pred CCCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHH
Confidence 37999999999999999999999999999995 899999999865
No 2
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=26.59 E-value=35 Score=26.33 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=19.8
Q ss_pred CceEecchhhHHHHHHHHHHHHHH
Q 030677 118 EPVFVNAKQYHGILRRRQSRAKAE 141 (173)
Q Consensus 118 ePiyVNaKQY~rILrRRq~RaKlE 141 (173)
.-+|++-|...++.+||++..++=
T Consensus 137 ~W~~agGk~~~GLv~RR~~E~~l~ 160 (165)
T 3hde_A 137 RWTYAGGKQWKGLMTRREIEREIC 160 (165)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHH
T ss_pred HHhhcCCEEchhHHHHHHHHHHHH
Confidence 456778899999999999987764
No 3
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=24.57 E-value=40 Score=25.80 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.5
Q ss_pred CceEecchhhHHHHHHHHHHHHHHhhc
Q 030677 118 EPVFVNAKQYHGILRRRQSRAKAESEN 144 (173)
Q Consensus 118 ePiyVNaKQY~rILrRRq~RaKlE~~~ 144 (173)
.-++++-|...++.+||++.+++=...
T Consensus 127 ~W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 127 DFVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 456778889999999999988875443
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=22.48 E-value=27 Score=26.08 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.9
Q ss_pred ceEecchhhHHHHHHHHHHHHH
Q 030677 119 PVFVNAKQYHGILRRRQSRAKA 140 (173)
Q Consensus 119 PiyVNaKQY~rILrRRq~RaKl 140 (173)
-+|.+-| ..++.+||++.+++
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4566778 89999999988765
No 5
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=20.03 E-value=55 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.6
Q ss_pred CceEecchhhHHHHHHHHHHHHHHhhc
Q 030677 118 EPVFVNAKQYHGILRRRQSRAKAESEN 144 (173)
Q Consensus 118 ePiyVNaKQY~rILrRRq~RaKlE~~~ 144 (173)
.-+|.+-|...++.+||++.+++=..+
T Consensus 155 ~W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 155 DFVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp GCCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HHhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 456778889999999999988875543
No 6
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=10.36 E-value=82 Score=24.06 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=10.7
Q ss_pred CCceEecchhhHH
Q 030677 117 EEPVFVNAKQYHG 129 (173)
Q Consensus 117 eePiyVNaKQY~r 129 (173)
..=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 4568999999976
No 7
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=10.19 E-value=25 Score=26.26 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=16.4
Q ss_pred ceEecchhhHHHHHHHHHHHHHH
Q 030677 119 PVFVNAKQYHGILRRRQSRAKAE 141 (173)
Q Consensus 119 PiyVNaKQY~rILrRRq~RaKlE 141 (173)
-+|++-|...++.+||++.+++=
T Consensus 113 W~~~~Gk~~~GL~~RR~~E~~l~ 135 (140)
T 3hdf_A 113 WTYAGGKQWKGLMTRREIEREIC 135 (140)
T ss_dssp STTTCCSCCCSSSCHHHHHHHHH
T ss_pred HhhcCCEEchhHHHHHHHHHHHH
Confidence 34556677788888888877663
No 8
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=9.68 E-value=1.1e+02 Score=19.01 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhcc
Q 030677 131 LRRRQSRAKAESENK 145 (173)
Q Consensus 131 LrRRq~RaKlE~~~k 145 (173)
-|||..||...++-|
T Consensus 4 ~rrrerra~kqa~wk 18 (35)
T 1qfq_B 4 TRRRERRAEKQAQWK 18 (35)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhh
Confidence 367777766555543
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=9.42 E-value=1.7e+02 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=20.7
Q ss_pred CceEecchhhHHHHHHHHHHHHHHhh
Q 030677 118 EPVFVNAKQYHGILRRRQSRAKAESE 143 (173)
Q Consensus 118 ePiyVNaKQY~rILrRRq~RaKlE~~ 143 (173)
.|--.|.+.|-+|+|.+..|.++-.-
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li~~ 113 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLFGL 113 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557999999999999888887543
No 10
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=8.87 E-value=2e+02 Score=21.87 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcccccc
Q 030677 128 HGILRRRQSRAKAESENKVLKS 149 (173)
Q Consensus 128 ~rILrRRq~RaKlE~~~kl~k~ 149 (173)
+.-+|.|.-||=|.+|.|++|.
T Consensus 84 ~~CVr~rI~rAFLiEEqKivkk 105 (119)
T 3iz5_i 84 GPAVRERIIRAFLVEEQKIVKK 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!