Query 030677
Match_columns 173
No_of_seqs 142 out of 205
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 04:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xjua_ d.2.1.3 (A:) Endolysin 14.6 44 0.0032 22.8 2.3 25 120-144 129-153 (158)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 12.7 20 0.0015 28.1 -0.0 11 118-128 48-58 (276)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 9.7 29 0.0021 27.3 -0.0 11 118-128 53-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 9.0 32 0.0024 27.0 -0.0 12 118-129 62-73 (286)
5 d1a8ya1 c.47.1.3 (A:3-126) Cal 8.6 1.3E+02 0.0096 19.0 3.0 24 110-133 3-27 (124)
6 d2b5ua2 b.110.1.1 (A:84-315) C 7.5 1.5E+02 0.011 22.8 3.3 31 109-139 189-221 (232)
7 d1y7ua1 d.38.1.1 (A:8-171) Acy 6.9 1.2E+02 0.0086 21.0 2.3 24 124-147 135-158 (164)
8 d2huja1 a.24.26.1 (A:1-120) Hy 6.9 1.2E+02 0.009 21.1 2.3 34 125-158 38-71 (120)
9 d1ob1c2 g.3.11.4 (C:46-96) Mer 6.1 72 0.0052 19.9 0.6 21 61-81 28-49 (51)
10 d1e0na_ b.72.1.1 (A:) Hypothet 5.9 83 0.006 17.3 0.7 10 117-126 10-19 (27)
No 1
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=14.59 E-value=44 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=18.5
Q ss_pred eEecchhhHHHHHHHHHHHHHHhhc
Q 030677 120 VFVNAKQYHGILRRRQSRAKAESEN 144 (173)
Q Consensus 120 iyVNaKQY~rILrRRq~RaKlE~~~ 144 (173)
.+.+-|-..++.+||++.++|=.++
T Consensus 129 ~~~~g~~~~GL~~RR~~E~~L~l~g 153 (158)
T d1xjua_ 129 VNSNGVPLRGLKIRREKERQLCLTG 153 (158)
T ss_dssp CEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhcCCEEChhHHHHHHHHHHHHHcc
Confidence 3445566789999999988886554
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=12.69 E-value=20 Score=28.14 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=8.4
Q ss_pred CceEecchhhH
Q 030677 118 EPVFVNAKQYH 128 (173)
Q Consensus 118 ePiyVNaKQY~ 128 (173)
--||||+.||+
T Consensus 48 vSIFVNP~QF~ 58 (276)
T d1v8fa_ 48 VSVFVNPLQFG 58 (276)
T ss_dssp EEECCCGGGCC
T ss_pred EEEEecCccCC
Confidence 35899999843
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=9.74 E-value=29 Score=27.27 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=8.4
Q ss_pred CceEecchhhH
Q 030677 118 EPVFVNAKQYH 128 (173)
Q Consensus 118 ePiyVNaKQY~ 128 (173)
-.||||+.||+
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 35899998864
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.99 E-value=32 Score=27.02 Aligned_cols=12 Identities=33% Similarity=0.600 Sum_probs=9.4
Q ss_pred CceEecchhhHH
Q 030677 118 EPVFVNAKQYHG 129 (173)
Q Consensus 118 ePiyVNaKQY~r 129 (173)
--||||+.||+-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 467999999764
No 5
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.55 E-value=1.3e+02 Score=18.96 Aligned_cols=24 Identities=33% Similarity=0.715 Sum_probs=16.3
Q ss_pred CCCC-CCCCCceEecchhhHHHHHH
Q 030677 110 PLPT-DAVEEPVFVNAKQYHGILRR 133 (173)
Q Consensus 110 pLP~-~~~eePiyVNaKQY~rILrR 133 (173)
.+|. |..+.-+-+|++.|.++|+.
T Consensus 3 ~~p~~d~~~~V~~L~~~nf~~~l~~ 27 (124)
T d1a8ya1 3 DFPEYDGVDRVINVNAKNYKNVFKK 27 (124)
T ss_dssp CCCCCCCCCCCEECCTTTHHHHHHH
T ss_pred CCCccCCCCccEECCHHHHHHHHHh
Confidence 4453 33456678999999988863
No 6
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.54 E-value=1.5e+02 Score=22.80 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=18.1
Q ss_pred CCCCCCCCCCceEecch--hhHHHHHHHHHHHH
Q 030677 109 VPLPTDAVEEPVFVNAK--QYHGILRRRQSRAK 139 (173)
Q Consensus 109 vpLP~~~~eePiyVNaK--QY~rILrRRq~RaK 139 (173)
+-.|.+..-|||||--- ==-..++|||...|
T Consensus 189 i~FP~~SGl~PvYVs~~~~l~s~~~~r~q~e~k 221 (232)
T d2b5ua2 189 IRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEEN 221 (232)
T ss_dssp EECCGGGCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_pred EEccCCCCCCCEEEEecccCCHHHHHHHHHHHH
Confidence 34455555699998432 22355667766544
No 7
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=6.94 E-value=1.2e+02 Score=21.05 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHHHHHHHhhcccc
Q 030677 124 AKQYHGILRRRQSRAKAESENKVL 147 (173)
Q Consensus 124 aKQY~rILrRRq~RaKlE~~~kl~ 147 (173)
.+.|..-.+||++|...+++.|-.
T Consensus 135 ~~~~~~a~~r~~~R~~r~~~~~~~ 158 (164)
T d1y7ua1 135 KESHRIAVLRAEQRHIRKAESKKV 158 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777766665533
No 8
>d2huja1 a.24.26.1 (A:1-120) Hypothetical protein Lin2004 {Listeria innocua [TaxId: 1642]}
Probab=6.87 E-value=1.2e+02 Score=21.12 Aligned_cols=34 Identities=12% Similarity=-0.095 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccccchhhc
Q 030677 125 KQYHGILRRRQSRAKAESENKVLKSRKACHKLQV 158 (173)
Q Consensus 125 KQY~rILrRRq~RaKlE~~~kl~k~RKpYlhe~~ 158 (173)
|=|-..+.+...+-+..+..-+...|.||||+.-
T Consensus 38 KPf~d~vd~~l~~W~~~a~~~i~~~rp~y~h~~Q 71 (120)
T d2huja1 38 KPFVDEAKRCADDFLELAIPWVNTERPPYLGELQ 71 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcccCCHHH
Confidence 3344445555555444444444458999999863
No 9
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=6.05 E-value=72 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=16.2
Q ss_pred ccccC-CCCCCCCCcccccccC
Q 030677 61 AMAPA-AYPYPDPYYRSIFAPY 81 (173)
Q Consensus 61 sma~~-~yPY~DpyyGg~~aaY 81 (173)
-|+|. .-|-..|||.|+|-.|
T Consensus 28 kIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 28 KITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCEEEECSTTCCEEGGGTEECC
T ss_pred eEEEEecCCCCCcccceEEeec
Confidence 36655 6678889999999875
No 10
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.95 E-value=83 Score=17.27 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=7.9
Q ss_pred CCceEecchh
Q 030677 117 EEPVFVNAKQ 126 (173)
Q Consensus 117 eePiyVNaKQ 126 (173)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 3799999864
Done!