BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030678
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis
           Thaliana Protein Containing Duf538 Domain
          Length = 170

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 39  EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
           E+LK ++ PIGI P   T Y+ +  T K +      C    + S  LK+  T+ G++ KG
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 99  KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
           KL+ +EG+  K+  +WV +  +S     + F+ G+
Sbjct: 116 KLTDVEGIKTKV-MIWVKVTSISTDASKVYFTAGM 149


>pdb|2I6E|A Chain A, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|B Chain B, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|C Chain C, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|D Chain D, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|E Chain E, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|F Chain F, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|G Chain G, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
 pdb|2I6E|H Chain H, Crystal Structure Of Protein Dr0370 From Deinococcus
           Radiodurans, Pfam Duf178
          Length = 301

 Score = 30.8 bits (68), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 20/99 (20%)

Query: 62  SSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVK----LFFMWVDI 117
           SSTG    Y  G   F+          P +        ++++ GV  +    L    VDI
Sbjct: 9   SSTGPQHPYRAGWIHFT-------NVAPILDSLELPPGVTAITGVPTQXNAALLSGEVDI 61

Query: 118 VEVS-----RHGDTL----DFSVGITGADFPVVNFEECP 147
             VS     RH DTL    DFSV + G  + V  F  CP
Sbjct: 62  ANVSAVEFIRHADTLAALPDFSVAVLGPVYSVNLFHTCP 100


>pdb|2APN|A Chain A, Hi1723 Solution Structure
          Length = 114

 Score = 27.7 bits (60), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 124 GDTLDFSVGITGADFPVVNFEECPQCGCG 152
           G T+D++ G+ G+ F V N      CGCG
Sbjct: 81  GGTVDYTEGLEGSRFTVNNPNATSTCGCG 109


>pdb|2CAU|A Chain A, Canavalin From Jack Bean
 pdb|2CAV|A Chain A, Canavalin From Jack Bean
          Length = 445

 Score = 26.6 bits (57), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 28  TPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKY 87
           TP +   P   + L+   F I     G       SST +  +Y +      LE SY   Y
Sbjct: 144 TPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPY 203

Query: 88  EPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDT 126
           +   +  + + +    EGV VK+      I E+S+H  +
Sbjct: 204 DEIEQTLLQEEQ----EGVIVKM--PKDQIQEISKHAQS 236


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,645,680
Number of Sequences: 62578
Number of extensions: 187622
Number of successful extensions: 358
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 5
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)