BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030678
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana
GN=At5g01610 PE=1 SV=1
Length = 170
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 39 EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
E+LK ++ PIGI P T Y+ + T K + C + S LK+ T+ G++ KG
Sbjct: 56 ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 99 KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
KL+ +EG+ K+ +WV + +S + F+ G+
Sbjct: 116 KLTDVEGIKTKV-MIWVKVTSISTDASKVYFTAGM 149
>sp|Q5YVN7|DNLJ1_NOCFA DNA ligase 1 OS=Nocardia farcinica (strain IFM 10152) GN=ligA1 PE=3
SV=1
Length = 663
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 86 KYEPTIKG--YITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI------TGAD 137
+ EP G +TK L++ + + + + D V V R GD + F G+ TGA+
Sbjct: 322 RLEPVFVGGTTVTKATLANQQVIRARDIKVG-DTVLVRRAGDVIPFVAGVLDASKRTGAE 380
Query: 138 FPVVNFEECPQCG 150
+V ECP CG
Sbjct: 381 VEIVPPTECPSCG 393
>sp|C0QSF6|DNLJ_PERMH DNA ligase OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=ligA PE=3 SV=1
Length = 714
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 86 KYEPTIKGYITKGKLSSLEGVSVKLFFMWV-DIVEVSRHGDTLDFSVGI-----TGADFP 139
K EP G +T +S + +K + V D+V + R GD + + V + TG + P
Sbjct: 377 KLEPVEIGGVTVSSVSLINEDFIKEKDIRVGDLVLIERAGDVIPYVVKVVTEARTGKEKP 436
Query: 140 VVNFEECPQCGCGL 153
+ +ECP CG L
Sbjct: 437 IQFPKECPSCGSPL 450
>sp|Q1QES5|ERPA_PSYCK Iron-sulfur cluster insertion protein ErpA OS=Psychrobacter
cryohalolentis (strain K5) GN=erpA PE=3 SV=1
Length = 126
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 123 HGDTLDFSVGITGADFPVVNFEECPQCGCG 152
G T+D++ G+ GA F V N CGCG
Sbjct: 92 QGSTVDYTEGLEGARFIVTNPNATTTCGCG 121
>sp|Q4FVP8|ERPA_PSYA2 Iron-sulfur cluster insertion protein ErpA OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=erpA PE=3 SV=1
Length = 126
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 123 HGDTLDFSVGITGADFPVVNFEECPQCGCG 152
G T+D++ G+ GA F V N CGCG
Sbjct: 92 QGSTVDYTEGLEGARFIVTNPNATTTCGCG 121
>sp|Q8DQN5|ZMPB_STRR6 Zinc metalloprotease ZmpB OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=zmpB PE=3 SV=1
Length = 1876
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 73 GSCSFSLEGSYQLK-YEPTIKGYITKGKLSSLEGVSVKLFFMWVDI 117
GS +L+G L+ Y I G I KG+L+ L G +++LF + D+
Sbjct: 1283 GSAEKNLKGDRSLEAYREVIGGTIGKGELNGLLGYNMRLFTKYTDL 1328
>sp|Q5DRD3|PCDBF_PANTR Protocadherin beta-15 OS=Pan troglodytes GN=PCDHB15 PE=3 SV=1
Length = 787
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 16 QILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSC 75
QIL L++ P FA+ YEV N P+G L V+ DL++ T NG
Sbjct: 227 QILILVLDANDNAPEFAQ--ALYEVQVPENSPVGSLVVKVSARDLDTGT-------NGEI 277
Query: 76 SFSLEGSYQLKYEPTIKGYITKGKLSSLEG 105
S+SL S + +P +LSSL G
Sbjct: 278 SYSLYYSSEEINKPF--------ELSSLSG 299
>sp|A7I236|DNLJ_CAMHC DNA ligase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG
19568 / NCTC 13146 / CH001A) GN=ligA PE=3 SV=1
Length = 645
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 109 KLFFMWVDIVEVSRHGDTLDFSVGITGA-----DFPVVNFEECPQCGCGL 153
+L M DIV + R GD + G+ GA + P+ E CP CG L
Sbjct: 354 RLGLMKGDIVSIIRSGDVIPKITGVFGARRNGSETPIKRPEFCPVCGSRL 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,125,078
Number of Sequences: 539616
Number of extensions: 2654855
Number of successful extensions: 5799
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5788
Number of HSP's gapped (non-prelim): 16
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)