Query 030678
Match_columns 173
No_of_seqs 108 out of 345
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 2.6E-44 8.8E-49 290.8 5.7 120 31-152 48-167 (170)
2 3dex_A SAV_2001; alpha-beta pr 52.8 17 0.00057 26.9 4.1 33 36-75 32-65 (107)
3 2npb_A Selenoprotein W; struct 52.0 10 0.00035 27.2 2.8 34 37-77 23-58 (96)
4 2ojl_A Hypothetical protein; B 36.6 24 0.00084 26.0 2.9 35 36-77 28-63 (108)
5 2oka_A Hypothetical protein; P 36.5 28 0.00094 25.4 3.1 35 36-77 25-60 (104)
6 2p0g_A Selenoprotein W-related 36.4 28 0.00095 25.4 3.1 35 36-77 23-58 (105)
7 2nzc_A Hypothetical protein; s 29.8 16 0.00056 25.9 0.9 17 97-113 66-82 (86)
8 3u1u_A RNA polymerase-associat 29.7 1.5E+02 0.005 22.0 6.3 49 85-148 54-102 (137)
9 2kyj_A LITX; scorpion toxin, i 25.9 17 0.0006 21.7 0.4 23 138-160 2-28 (36)
10 2fa8_A Hypothetical protein AT 24.5 32 0.0011 25.0 1.7 32 37-75 28-60 (105)
11 3qth_A Uncharacterized protein 23.3 32 0.0011 27.3 1.6 14 36-49 145-158 (176)
12 1y1l_A Arsenate reductase (ARS 21.5 40 0.0014 24.2 1.7 41 31-73 38-78 (124)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=100.00 E-value=2.6e-44 Score=290.85 Aligned_cols=120 Identities=25% Similarity=0.479 Sum_probs=115.4
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCceeeEeecCCCeEEEEeccceEEEEccceEEEEccEEEEEeecCcccCCcceEEEE
Q 030678 31 FAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKL 110 (173)
Q Consensus 31 ~~~~~tayelL~~~GlP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~f~~~~~~~v~Y~~~ItG~i~~g~I~~L~GVkvK~ 110 (173)
+++.++|||+|++||||+||||++|++|+||++||+|+|+|+++|+++++++|+|+|+++|||+|++|+|++|+||++|+
T Consensus 48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~ 127 (170)
T 1ydu_A 48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKV 127 (170)
T ss_dssp TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEES
T ss_pred ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEE
Confidence 47788999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEeeeEEEEEeCCEEEEEEceeeeeeecCCccCCCCCCCC
Q 030678 111 FFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG 152 (173)
Q Consensus 111 lf~Wv~V~eI~~dg~~I~F~vG~~sksFP~s~F~~~P~C~~g 152 (173)
| +|++|+||.+++|+|+|++|+ +++||+++|+.+|+|...
T Consensus 128 L-lWv~V~eI~v~~~kI~F~vGi-~ksfp~saFe~~~~c~~~ 167 (170)
T 1ydu_A 128 M-IWVKVTSISTDASKVYFTAGM-KKSRSRDAYGVQRNGLRV 167 (170)
T ss_dssp S-SEESCCCBEECSSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred E-EEeeEEEEEEeCCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence 9 999999999999999999995 799999999999999753
No 2
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=52.80 E-value=17 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=24.0
Q ss_pred cHHHHHhhcCCCCCCCCCCceeeEeec-CCCeEEEEeccce
Q 030678 36 TAYEVLKSFNFPIGILPKGVTGYDLES-STGKFSAYFNGSC 75 (173)
Q Consensus 36 tayelL~~~GlP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C 75 (173)
-|-|+|.++ |..+.+.++.+ .+|.|+|+++++-
T Consensus 32 laqeLl~tF-------~~~l~eVsL~Pg~gG~FeV~vdg~l 65 (107)
T 3dex_A 32 LAQELLTTF-------ETELTELALKPGTGGVFVVRVDDEV 65 (107)
T ss_dssp HHHHHHHHS-------TTTEEEEEEEEESSSCEEEEETTEE
T ss_pred HHHHHHHhc-------ccccceEEEEeCCCceEEEEECCEE
Confidence 467888887 45566777776 5678999998753
No 3
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=52.02 E-value=10 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCCCCCCCce-eeEeec-CCCeEEEEeccceEE
Q 030678 37 AYEVLKSFNFPIGILPKGVT-GYDLES-STGKFSAYFNGSCSF 77 (173)
Q Consensus 37 ayelL~~~GlP~GLLP~~V~-~Y~l~~-~tG~f~V~L~~~C~f 77 (173)
+-|+|++| |..+. +..+.+ ++|.|+|++++.=-+
T Consensus 23 aqeLl~~F-------p~~l~V~~~l~p~~~G~FEV~vng~lV~ 58 (96)
T 2npb_A 23 KEKLEHEF-------PGCLDICGEGTPQVTGFFEVTVAGKLVH 58 (96)
T ss_dssp HHHHHHHS-------BTTEEEEECCCSSCCSCCEEEETTEEEE
T ss_pred HHHHHHhC-------CcceEEEEEEcCCCCcEEEEEECCEEEE
Confidence 45677776 44455 566655 479999999875433
No 4
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=36.63 E-value=24 Score=25.98 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred cHHHHHhhcCCCCCCCCCCceeeEeec-CCCeEEEEeccceEE
Q 030678 36 TAYEVLKSFNFPIGILPKGVTGYDLES-STGKFSAYFNGSCSF 77 (173)
Q Consensus 36 tayelL~~~GlP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C~f 77 (173)
-|-|+|.+++= .+.+.++.+ .+|.|+|++++.--+
T Consensus 28 laqeLl~tF~~-------~l~eV~L~P~~~G~FeV~vng~lVw 63 (108)
T 2ojl_A 28 MAQELLSTFGA-------DLGEVALVPGTGGVFRIHYNGAPLW 63 (108)
T ss_dssp HHHHHHHHHGG-------GSSEEEEEEECTTCEEEEETTEEEE
T ss_pred HHHHHHHhcCc-------ccceEEEEeCCCceEEEEECCEEEE
Confidence 35688888752 344667765 468999999876443
No 5
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=36.48 E-value=28 Score=25.42 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=22.7
Q ss_pred cHHHHHhhcCCCCCCCCCCceeeEeec-CCCeEEEEeccceEE
Q 030678 36 TAYEVLKSFNFPIGILPKGVTGYDLES-STGKFSAYFNGSCSF 77 (173)
Q Consensus 36 tayelL~~~GlP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C~f 77 (173)
-+-|+|++|+ +.+.+.++.+ .+|.|+|++++.=-+
T Consensus 25 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~lV~ 60 (104)
T 2oka_A 25 LAQELLSTFA-------DDLGKVCLEPGTGGVFRITCDGVQVW 60 (104)
T ss_dssp HHHHHHHHST-------TTCSEEEEEEECTTCEEEEETTEEEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEEEE
Confidence 3567777764 2244666665 478999999876433
No 6
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=36.37 E-value=28 Score=25.44 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=23.0
Q ss_pred cHHHHHhhcCCCCCCCCCCceeeEeec-CCCeEEEEeccceEE
Q 030678 36 TAYEVLKSFNFPIGILPKGVTGYDLES-STGKFSAYFNGSCSF 77 (173)
Q Consensus 36 tayelL~~~GlP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C~f 77 (173)
-+-|+|.+|+ ..+.+.++.+ .+|.|+|++++.=-+
T Consensus 23 laqeLl~tF~-------~~l~~v~l~P~~~G~FEV~vng~lV~ 58 (105)
T 2p0g_A 23 LSQELLHTFS-------EEIEYVALHPDTGGRFEIFCNGVQIW 58 (105)
T ss_dssp HHHHHHHHTT-------TTEEEEEEEEESTTCEEEEETTEEEE
T ss_pred HHHHHHHHcC-------cccceEEEEeCCCceEEEEECCEEEE
Confidence 3556777753 3345667766 478999999876433
No 7
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=29.77 E-value=16 Score=25.93 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=14.7
Q ss_pred cCcccCCcceEEEEEEE
Q 030678 97 KGKLSSLEGVSVKLFFM 113 (173)
Q Consensus 97 ~g~I~~L~GVkvK~lf~ 113 (173)
.|++.+|+||+||-...
T Consensus 66 ~gkLg~i~GV~vKt~~~ 82 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVPL 82 (86)
T ss_dssp HHHHHTSTTEEEEEEEC
T ss_pred HHHhCCCCCEEEEEEEe
Confidence 68999999999998753
No 8
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=29.72 E-value=1.5e+02 Score=21.97 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=34.8
Q ss_pred EEEccEEEEEeecCcccCCcceEEEEEEEEeeeEEEEEeCCEEEEEEceeeeeeecCCccCCCC
Q 030678 85 LKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQ 148 (173)
Q Consensus 85 v~Y~~~ItG~i~~g~I~~L~GVkvK~lf~Wv~V~eI~~dg~~I~F~vG~~sksFP~s~F~~~P~ 148 (173)
++.=.+|.|..+.++..++.+.++... |....|-..+.|+++.+.++|-
T Consensus 54 ~Yrl~qI~gv~~~~k~Y~l~~~~T~~~---------------L~l~~g~~~r~~~~~~vSN~~f 102 (137)
T 3u1u_A 54 VYRVAEITGVVETAKVYQLGGTRTNKG---------------LQLRHGNDQRVFRLEFVSNQEF 102 (137)
T ss_dssp EEEEEEEEEEEEEEEEEEETTEEEEEE---------------EEEEETTEEEEEEGGGBCSSCC
T ss_pred cEEEEEEEEEEecCcccccCCceeeEE---------------EEEEeCCcceEEEeeeecCCCC
Confidence 444568999888888888888655443 4455566677888888877775
No 9
>2kyj_A LITX; scorpion toxin, insect toxin, disulfide-directed hairpin, to; NMR {Liocheles australasiae} PDB: 2lds_A
Probab=25.90 E-value=17 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.506 Sum_probs=17.2
Q ss_pred eecCCccC----CCCCCCCccCCCcch
Q 030678 138 FPVVNFEE----CPQCGCGLNCYGENI 160 (173)
Q Consensus 138 FP~s~F~~----~P~C~~g~~c~~~~~ 160 (173)
||+|.|-+ +..|+..+.|+..+|
T Consensus 2 ~pls~~y~scvrp~kckp~lkcn~aqi 28 (36)
T 2kyj_A 2 FPLSKEYESCVRPRKCKPPLKCNKAQI 28 (36)
T ss_dssp CCEECSSCBCCTTCEECTTCEECTTCB
T ss_pred CchhhhhhhccCccccCCCcccCcceE
Confidence 77777754 567888899987764
No 10
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=24.45 E-value=32 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCCCCCCCCceeeEeec-CCCeEEEEeccce
Q 030678 37 AYEVLKSFNFPIGILPKGVTGYDLES-STGKFSAYFNGSC 75 (173)
Q Consensus 37 ayelL~~~GlP~GLLP~~V~~Y~l~~-~tG~f~V~L~~~C 75 (173)
+-|+|++|+ +.+.+.++.+ .+|.|+|++++.=
T Consensus 28 aqeLl~tF~-------~~l~~V~l~P~~~G~FEV~vng~l 60 (105)
T 2fa8_A 28 AQEILQTFA-------SDIGEVSLIPSTGGLFEITVDGTI 60 (105)
T ss_dssp HHHHHHHHG-------GGCSEEEEEEECTTCEEEEETTEE
T ss_pred HHHHHHHcC-------cccceEEEEcCCCcEEEEEECCEE
Confidence 446666653 2233555554 4789999998753
No 11
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=23.30 E-value=32 Score=27.27 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=13.5
Q ss_pred cHHHHHhhcCCCCC
Q 030678 36 TAYEVLKSFNFPIG 49 (173)
Q Consensus 36 tayelL~~~GlP~G 49 (173)
|||.+|+..|.|.|
T Consensus 145 TAYaILR~~GV~LG 158 (176)
T 3qth_A 145 MVYAIAKNNGVSVT 158 (176)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHhcCCCcC
Confidence 89999999999998
No 12
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1
Probab=21.48 E-value=40 Score=24.24 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=30.8
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCceeeEeecCCCeEEEEecc
Q 030678 31 FAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNG 73 (173)
Q Consensus 31 ~~~~~tayelL~~~GlP~GLLP~~V~~Y~l~~~tG~f~V~L~~ 73 (173)
....+.+.++|+++|++.|.-|+.+++..+.. =.+-+.|..
T Consensus 38 ~~~~~~a~~~l~e~Gids~~~sr~l~~~~~~~--~D~Ii~m~~ 78 (124)
T 1y1l_A 38 ERVDETVKRLLAERGLKAKEKPRTVDEVNLDD--FDLIVTVCE 78 (124)
T ss_dssp SSCCHHHHHHHHTTTCCCCSSCCBGGGSCGGG--CSCEEEEEC
T ss_pred CCCCHHHHHHHHHcCcCCCCccccCChhHhcC--CCEEEEecC
Confidence 35677999999999999777899999876643 344455543
Done!