BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030679
MATSLNFSANQVSTQPPELCLRRSSFKSKLSSPRRPKFVSFAVNSTEPSSPEPEKPEIEL
EFIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE
KPESWRLACQTIVGNKENSGKVCSRTMFLLNLLAFLQKEMRVTSLNHSKLPSR

High Scoring Gene Products

Symbol, full name Information P value
AT4G32590 protein from Arabidopsis thaliana 1.5e-33
PnsB3
AT3G16250
protein from Arabidopsis thaliana 2.2e-15

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030679
        (173 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2125637 - symbol:AT4G32590 species:3702 "Arabi...   265  1.5e-33   2
TAIR|locus:2094882 - symbol:PnsB3 "Photosynthetic NDH  su...   126  2.2e-15   2


>TAIR|locus:2125637 [details] [associations]
            symbol:AT4G32590 species:3702 "Arabidopsis thaliana"
            [GO:0009055 "electron carrier activity" evidence=IEA;ISS]
            [GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0009688
            "abscisic acid biosynthetic process" evidence=RCA]
            InterPro:IPR001041 Pfam:PF00111 EMBL:CP002687 GO:GO:0009055
            GO:GO:0046872 GO:GO:0051536 Gene3D:3.10.20.30 InterPro:IPR012675
            SUPFAM:SSF54292 IPI:IPI00522855 RefSeq:NP_974664.1 UniGene:At.2244
            ProteinModelPortal:F4JUE0 SMR:F4JUE0 PRIDE:F4JUE0
            EnsemblPlants:AT4G32590.3 GeneID:829394 KEGG:ath:AT4G32590
            OMA:LNERTDT PhylomeDB:F4JUE0 Uniprot:F4JUE0
        Length = 180

 Score = 265 (98.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query:    62 FIAPRAGDDGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVMNCGGGGSCGTCIVE 120
             F  P+ G DGSYPV++AKA+SG+KLLR+IM DNKIELYA YGKVMNCGGGGSCGTCIVE
Sbjct:    62 FFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIELYAAYGKVMNCGGGGSCGTCIVE 120

 Score = 116 (45.9 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query:   120 EKPESWRLACQTIVGNKENSGK 141
             +KPESWRLACQTIVGNKENSGK
Sbjct:   141 KKPESWRLACQTIVGNKENSGK 162


>TAIR|locus:2094882 [details] [associations]
            symbol:PnsB3 "Photosynthetic NDH  subcomplex B 3"
            species:3702 "Arabidopsis thaliana" [GO:0009055 "electron carrier
            activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0051536 "iron-sulfur cluster binding"
            evidence=IEA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=IMP] [GO:0010598 "NAD(P)H dehydrogenase
            complex (plastoquinone)" evidence=IMP;IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019760 "glucosinolate metabolic process"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] [GO:0030003 "cellular cation homeostasis"
            evidence=RCA] [GO:0070838 "divalent metal ion transport"
            evidence=RCA] InterPro:IPR001041 Pfam:PF00111 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0009055 GO:GO:0046872 EMBL:AB023046
            GO:GO:0051536 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
            eggNOG:COG0633 GO:GO:0009535 GO:GO:0009773 GO:GO:0010598
            UniGene:At.32719 UniGene:At.23571 UniGene:At.6081 EMBL:AY042867
            EMBL:BT006260 IPI:IPI00544543 RefSeq:NP_188246.1
            ProteinModelPortal:Q9LU21 SMR:Q9LU21 IntAct:Q9LU21 STRING:Q9LU21
            PaxDb:Q9LU21 PRIDE:Q9LU21 EnsemblPlants:AT3G16250.1 GeneID:820871
            KEGG:ath:AT3G16250 TAIR:At3g16250 HOGENOM:HOG000242320
            InParanoid:Q9LU21 OMA:EWKAHEW PhylomeDB:Q9LU21
            ProtClustDB:CLSN2683987 Genevestigator:Q9LU21 Uniprot:Q9LU21
        Length = 204

 Score = 126 (49.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 27/52 (51%), Positives = 35/52 (67%)

Query:    70 DGSYPVERAKAISGEKLLRNIMLDNKIELYATYGKVM-NCGGGGSCGTCIVE 120
             DG+  V   +A  G+KL R+IMLD+ IELY  Y K + NC G G+C TC+VE
Sbjct:    82 DGTPDVHWRRANGGQKL-RDIMLDSNIELYGPYSKPLSNCAGVGTCATCMVE 132

 Score = 81 (33.6 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 14/22 (63%), Positives = 19/22 (86%)

Query:   121 KPESWRLACQTIVGNKENSGKV 142
             KP++WRLACQT VGN +++G V
Sbjct:   154 KPKNWRLACQTNVGNPDSTGLV 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       138   0.00091  102 3  11 22  0.43    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.46u 0.12s 12.58t   Elapsed:  00:00:00
  Total cpu time:  12.46u 0.12s 12.58t   Elapsed:  00:00:00
  Start:  Mon May 20 18:16:40 2013   End:  Mon May 20 18:16:40 2013

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