BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030679
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 90 IMLDNKIELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTI 132
++LD E G C GG CG C V + RLAC T+
Sbjct: 23 LLLDYLRETVGLTGTKQGCDGG-ECGACTVLVDDRPRLACSTL 64
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 85 KLLRNIMLDNKIELYATYGKV 105
+L RN+ D+ +E+++TYGK+
Sbjct: 11 RLTRNVTKDHIMEIFSTYGKI 31
>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
Length = 631
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 18/42 (42%)
Query: 108 CGGGGSCGTCIV------------------EKPESWRLACQT 131
CGG G+CG C+V E + + LACQT
Sbjct: 38 CGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQT 79
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 97 ELYATYGKVMNCGGGGSCGTCIVEKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E++ T ++N E P++W ++G+ +S VC M +L LL+
Sbjct: 108 EVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 129 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 163
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 26.9 bits (58), Expect = 6.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P++W ++G+ +S VC M +L LL+
Sbjct: 131 EWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLS 165
>pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s]
Ferredoxin In The Class I Cyp199a2 System From
Rhodopseudomonas Palustris
Length = 126
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 100 ATYGKVMNCGGGGSCGTCIVEKPESWR 126
A G CGG +C TC V E+WR
Sbjct: 52 AIPGVEAECGGACACATCHVYVDEAWR 78
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 120 EKPESWRLACQTIVGNKENSGKVCSRTMFLLNLLA 154
E P+ W IVG S +C M +L LL+
Sbjct: 141 EWPKHWPTFISDIVGASRTSESLCQNNMVILKLLS 175
>pdb|1B9R|A Chain A, Terpredoxin From Pseudomonas Sp
Length = 105
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 103 GKVMNCGGGGSCGTCIVEKPESW 125
G V CGG C TC +E ++W
Sbjct: 34 GIVAECGGSCVCATCRIEIEDAW 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,985,796
Number of Sequences: 62578
Number of extensions: 136135
Number of successful extensions: 266
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 22
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)